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Cow genome map

           
Conread name:
           
Pig2-40K14
        

               
Conread position:
               
312-523
               

               
Cow position:
               
chr1:75998252-75998465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
18, 40
               

               
Conread position:
               
313-455
               

               
Cow position:
               
chr1:65671636-65671491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
22, 99
               

               
Conread position:
               
313-526
               

               
Cow position:
               
chr1:2998169-2997947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
65, 196
               

               
Conread position:
               
324-521
               

               
Cow position:
               
chr1:82371142-82370951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
119, 58
               

               
Conread position:
               
324-530
               

               
Cow position:
               
chr1:24406690-24406903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
53, 28
               

               
Conread position:
               
324-530
               

               
Cow position:
               
chr1:39121641-39121842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
126, 54
               

               
Conread position:
               
325-506
               

               
Cow position:
               
chr1:90390173-90390363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
29, 185
               

               
Conread position:
               
325-517
               

               
Cow position:
               
chr1:71782463-71782655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
26, 86
               

               
Conread position:
               
325-528
               

               
Cow position:
               
chr1:66355510-66355718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
54, 14
               

               
Conread position:
               
325-530
               

               
Cow position:
               
chr1:39183618-39183833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
67, 18
               

               
Conread position:
               
325-542
               

               
Cow position:
               
chr1:15902702-15902477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
26, 97
               

               
Conread position:
               
326-519
               

               
Cow position:
               
chr1:82076778-82076583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
117, 87
               

               
Conread position:
               
326-542
               

               
Cow position:
               
chr1:46006005-46006223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
124, 26
               

               
Conread position:
               
327-527
               

               
Cow position:
               
chr1:39026227-39026039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
49, 23
               

               
Conread position:
               
327-527
               

               
Cow position:
               
chr1:62732771-62732570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
19, 72
               

               
Conread position:
               
327-527
               

               
Cow position:
               
chr1:88910705-88910904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
116, 23
               

               
Conread position:
               
329-530
               

               
Cow position:
               
chr1:70416330-70416124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
47, 92
               

               
Conread position:
               
329-542
               

               
Cow position:
               
chr1:2765605-2765396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
21, 69
               

               
Conread position:
               
330-530
               

               
Cow position:
               
chr1:30066820-30066614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
47, 29
               

               
Conread position:
               
332-461
               

               
Cow position:
               
chr1:4385547-4385416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
22, 77
               

               
Conread position:
               
332-495
               

               
Cow position:
               
chr1:10953267-10953111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
114, 62
               

               
Conread position:
               
332-502
               

               
Cow position:
               
chr1:54125028-54125202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
46, 24
               

               
Conread position:
               
332-529
               

               
Cow position:
               
chr1:3288949-3289144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
47, 87
               

               
Conread position:
               
332-529
               

               
Cow position:
               
chr1:18283680-18283477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
45, 29
               

               
Conread position:
               
332-532
               

               
Cow position:
               
chr1:72641449-72641652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
114, 84
               

               
Conread position:
               
332-537
               

               
Cow position:
               
chr1:54288992-54289205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
39, 89
               

               
Conread position:
               
333-517
               

               
Cow position:
               
chr1:88321747-88321932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
20, 87
               

               
Conread position:
               
333-521
               

               
Cow position:
               
chr1:46218768-46218579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
20, 113
               

               
Conread position:
               
333-523
               

               
Cow position:
               
chr1:33921082-33921276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
45, 88
               

               
Conread position:
               
333-530
               

               
Cow position:
               
chr1:541992-541789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
42, 88
               

               
Conread position:
               
333-533
               

               
Cow position:
               
chr1:51904144-51904342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
45, 87
               

               
Conread position:
               
334-518
               

               
Cow position:
               
chr1:20582138-20581950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
44, 85
               

               
Conread position:
               
334-526
               

               
Cow position:
               
chr1:32913929-32913741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
113, 36
               

               
Conread position:
               
334-542
               

               
Cow position:
               
chr1:35170524-35170320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
44, 79
               

               
Conread position:
               
335-518
               

               
Cow position:
               
chr1:36896964-36897146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
42, 79
               

               
Conread position:
               
335-526
               

               
Cow position:
               
chr1:18414272-18414467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
9, 85
               

               
Conread position:
               
335-530
               

               
Cow position:
               
chr1:57119151-57119352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
43, 86
               

               
Conread position:
               
335-533
               

               
Cow position:
               
chr1:93110417-93110625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
37, 78
               

               
Conread position:
               
336-527
               

               
Cow position:
               
chr1:26531388-26531586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
37, 20
               

               
Conread position:
               
336-530
               

               
Cow position:
               
chr1:97622024-97622222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
18, 78
               

               
Conread position:
               
337-504
               

               
Cow position:
               
chr1:79663238-79663418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
337-527
               

               
Cow position:
               
chr1:35843728-35843929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
35, 88
               

               
Conread position:
               
337-530
               

               
Cow position:
               
chr1:44747054-44746858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
35, 84
               

               
Conread position:
               
338-521
               

               
Cow position:
               
chr1:9958698-9958508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
36, 71
               

               
Conread position:
               
338-542
               

               
Cow position:
               
chr1:38205663-38205456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
112, 78
               

               
Conread position:
               
339-501
               

               
Cow position:
               
chr1:43790047-43789879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
18, 83
               

               
Conread position:
               
339-526
               

               
Cow position:
               
chr1:82378984-82378788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
15, 75
               

               
Conread position:
               
339-537
               

               
Cow position:
               
chr1:3657174-3657374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
39, 78
               

               
Conread position:
               
339-537
               

               
Cow position:
               
chr1:61225469-61225282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
53, 69
               

               
Conread position:
               
339-542
               

               
Cow position:
               
chr1:22777350-22777561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
18, 83
               

               
Conread position:
               
339-542
               

               
Cow position:
               
chr1:58825727-58825527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
29, 19
               

               
Conread position:
               
339-542
               

               
Cow position:
               
chr1:96192477-96192684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
13, 33
               

               
Conread position:
               
340-497
               

               
Cow position:
               
chr1:64624638-64624800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
34, 71
               

               
Conread position:
               
340-527
               

               
Cow position:
               
chr1:85141544-85141733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
38, 73
               

               
Conread position:
               
340-537
               

               
Cow position:
               
chr1:25793248-25793444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
38, 71
               

               
Conread position:
               
340-542
               

               
Cow position:
               
chr1:74946929-74947135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
38, 79
               

               
Conread position:
               
342-539
               

               
Cow position:
               
chr1:6130551-6130747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
37, 71
               

               
Conread position:
               
343-467
               

               
Cow position:
               
chr1:57252363-57252239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
106, 65
               

               
Conread position:
               
343-518
               

               
Cow position:
               
chr1:15314728-15314916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
10, 71
               

               
Conread position:
               
343-525
               

               
Cow position:
               
chr1:41735442-41735620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
107, 29
               

               
Conread position:
               
343-525
               

               
Cow position:
               
chr1:62142300-62142484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
102, 73
               

               
Conread position:
               
343-526
               

               
Cow position:
               
chr1:76096624-76096437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
20, 82
               

               
Conread position:
               
343-527
               

               
Cow position:
               
chr1:53920775-53920588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
35, 66
               

               
Conread position:
               
343-527
               

               
Cow position:
               
chr1:90422894-90423083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
23, 78
               

               
Conread position:
               
343-528
               

               
Cow position:
               
chr1:45925229-45925037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
26, 79
               

               
Conread position:
               
343-530
               

               
Cow position:
               
chr1:78791120-78791310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
30, 79
               

               
Conread position:
               
343-537
               

               
Cow position:
               
chr1:26688284-26688484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
33, 78
               

               
Conread position:
               
343-537
               

               
Cow position:
               
chr1:30442137-30441945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
107, 27
               

               
Conread position:
               
343-537
               

               
Cow position:
               
chr1:51257202-51257006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
35, 76
               

               
Conread position:
               
343-540
               

               
Cow position:
               
chr1:63504521-63504320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
35, 70
               

               
Conread position:
               
343-542
               

               
Cow position:
               
chr1:31189929-31190124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
34, 17
               

               
Conread position:
               
343-542
               

               
Cow position:
               
chr1:31390404-31390607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
107, 65
               

               
Conread position:
               
343-542
               

               
Cow position:
               
chr1:53039521-53039719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
35, 78
               

               
Conread position:
               
343-542
               

               
Cow position:
               
chr1:54217204-54216999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
27, 65
               

               
Conread position:
               
344-529
               

               
Cow position:
               
chr1:97603451-97603638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
11, 74
               

               
Conread position:
               
344-530
               

               
Cow position:
               
chr1:11021202-11021012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
74, 14
               

               
Conread position:
               
345-516
               

               
Cow position:
               
chr1:24188407-24188231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
33, 56
               

               
Conread position:
               
345-530
               

               
Cow position:
               
chr1:72732222-72732035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
104, 63
               

               
Conread position:
               
345-537
               

               
Cow position:
               
chr1:70533757-70533948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
23, 13
               

               
Conread position:
               
345-542
               

               
Cow position:
               
chr1:64218243-64218444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
42, 76
               

               
Conread position:
               
345-542
               

               
Cow position:
               
chr1:71136336-71136135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
33, 70
               

               
Conread position:
               
346-542
               

               
Cow position:
               
chr1:42555447-42555248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
32, 73
               

               
Conread position:
               
347-525
               

               
Cow position:
               
chr1:80384579-80384764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
32, 74
               

               
Conread position:
               
347-542
               

               
Cow position:
               
chr1:69004568-69004380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
103, 29
               

               
Conread position:
               
349-530
               

               
Cow position:
               
chr1:46822151-46821961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
27, 72
               

               
Conread position:
               
350-530
               

               
Cow position:
               
chr1:95764912-95765096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
28, 71
               

               
Conread position:
               
351-524
               

               
Cow position:
               
chr1:95229150-95229331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
19, 70
               

               
Conread position:
               
353-526
               

               
Cow position:
               
chr1:39224742-39224928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
353-528
               

               
Cow position:
               
chr1:23041741-23041563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
20, 48
               

               
Conread position:
               
356-506
               

               
Cow position:
               
chr1:29338090-29337933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
21, 67
               

               
Conread position:
               
359-542
               

               
Cow position:
               
chr1:29975440-29975617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
91, 13
               

               
Conread position:
               
360-498
               

               
Cow position:
               
chr1:83926559-83926413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
17, 61
               

               
Conread position:
               
360-516
               

               
Cow position:
               
chr1:44685299-44685144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
90, 37
               

               
Conread position:
               
362-530
               

               
Cow position:
               
chr1:44511369-44511539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
88, 54
               

               
Conread position:
               
364-542
               

               
Cow position:
               
chr1:89443317-89443496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
88, 42
               

               
Conread position:
               
366-521
               

               
Cow position:
               
chr1:31413817-31413969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
367-508
               

               
Cow position:
               
chr1:49347338-49347200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
83, 49
               

               
Conread position:
               
370-542
               

               
Cow position:
               
chr1:75347782-75347607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
8, 47
               

               
Conread position:
               
372-521
               

               
Cow position:
               
chr1:59132062-59132213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
78, 44
               

               
Conread position:
               
372-524
               

               
Cow position:
               
chr1:50261774-50261927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
80, 34
               

               
Conread position:
               
372-530
               

               
Cow position:
               
chr1:28657529-28657688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
19, 42
               

               
Conread position:
               
372-537
               

               
Cow position:
               
chr1:69415556-69415722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
75, 45
               

               
Conread position:
               
372-540
               

               
Cow position:
               
chr1:21934029-21934189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
372-542
               

               
Cow position:
               
chr1:23100055-23099885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
77, 36
               

               
Conread position:
               
372-542
               

               
Cow position:
               
chr1:80764381-80764553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
77, 44
               

               
Conread position:
               
373-525
               

               
Cow position:
               
chr1:72807474-72807318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
64, 43
               

               
Conread position:
               
373-530
               

               
Cow position:
               
chr1:28678676-28678517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
80, 43
               

               
Conread position:
               
373-537
               

               
Cow position:
               
chr1:64189654-64189488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
79, 43
               

               
Conread position:
               
374-524
               

               
Cow position:
               
chr1:92010465-92010309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
69, 34
               

               
Conread position:
               
375-527
               

               
Cow position:
               
chr1:15691481-15691333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
75, 21
               

               
Conread position:
               
375-531
               

               
Cow position:
               
chr1:22910505-22910351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
75, 41
               

               
Conread position:
               
376-542
               

               
Cow position:
               
chr1:50045951-50045784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
65, 41
               

               
Conread position:
               
385-527
               

               
Cow position:
               
chr1:48083869-48083726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
62, 17
               

               
Conread position:
               
395-542
               

               
Cow position:
               
chr1:50345677-50345528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
57, 21
               

               
Conread position:
               
409-525
               

               
Cow position:
               
chr1:101772019-101771900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
41, 75
               

               
Conread position:
               
315-542
               

               
Cow position:
               
chr10:66874643-66874866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
126, 34
               

               
Conread position:
               
321-541
               

               
Cow position:
               
chr10:16683632-16683853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
129, 18
               

               
Conread position:
               
324-527
               

               
Cow position:
               
chr10:3115661-3115449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
17, 55
               

               
Conread position:
               
325-511
               

               
Cow position:
               
chr10:37884619-37884814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
49, 18
               

               
Conread position:
               
325-521
               

               
Cow position:
               
chr10:11317132-11316928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
12, 91
               

               
Conread position:
               
325-530
               

               
Cow position:
               
chr10:45606257-45606460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
53, 73
               

               
Conread position:
               
326-527
               

               
Cow position:
               
chr10:48255048-48255257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
25, 35
               

               
Conread position:
               
326-529
               

               
Cow position:
               
chr10:52244471-52244680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
51, 95
               

               
Conread position:
               
326-541
               

               
Cow position:
               
chr10:19590588-19590809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
59, 94
               

               
Conread position:
               
328-517
               

               
Cow position:
               
chr10:9341563-9341754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
50, 15
               

               
Conread position:
               
329-540
               

               
Cow position:
               
chr10:23948747-23948964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
28, 14
               

               
Conread position:
               
331-530
               

               
Cow position:
               
chr10:11403969-11404171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
62, 47
               

               
Conread position:
               
332-497
               

               
Cow position:
               
chr10:61113355-61113187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
45, 11
               

               
Conread position:
               
332-524
               

               
Cow position:
               
chr10:17553350-17553153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
16, 105
               

               
Conread position:
               
332-542
               

               
Cow position:
               
chr10:6038171-6038381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
13, 79
               

               
Conread position:
               
332-542
               

               
Cow position:
               
chr10:49624937-49624720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
45, 86
               

               
Conread position:
               
332-542
               

               
Cow position:
               
chr10:65071948-65072163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
43, 68
               

               
Conread position:
               
332-542
               

               
Cow position:
               
chr10:69226098-69225880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
40, 92
               

               
Conread position:
               
333-438
               

               
Cow position:
               
chr10:11086352-11086249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
333-493
               

               
Cow position:
               
chr10:20952299-20952137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
44, 87
               

               
Conread position:
               
333-526
               

               
Cow position:
               
chr10:68251981-68251786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
21, 78
               

               
Conread position:
               
333-527
               

               
Cow position:
               
chr10:22479558-22479754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
45, 78
               

               
Conread position:
               
336-541
               

               
Cow position:
               
chr10:24786274-24786062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
45, 86
               

               
Conread position:
               
339-492
               

               
Cow position:
               
chr10:42454282-42454123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
33, 71
               

               
Conread position:
               
339-526
               

               
Cow position:
               
chr10:15391653-15391460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
15, 81
               

               
Conread position:
               
339-527
               

               
Cow position:
               
chr10:10124506-10124312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
39, 82
               

               
Conread position:
               
339-527
               

               
Cow position:
               
chr10:37707251-37707054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
39, 83
               

               
Conread position:
               
339-530
               

               
Cow position:
               
chr10:6568388-6568202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
12, 70
               

               
Conread position:
               
339-530
               

               
Cow position:
               
chr10:8412891-8413086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
39, 30
               

               
Conread position:
               
339-530
               

               
Cow position:
               
chr10:48741001-48741195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
38, 69
               

               
Conread position:
               
340-448
               

               
Cow position:
               
chr10:42005434-42005544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
30, 72
               

               
Conread position:
               
340-521
               

               
Cow position:
               
chr10:38518475-38518654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
110, 73
               

               
Conread position:
               
341-524
               

               
Cow position:
               
chr10:23096620-23096809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
109, 67
               

               
Conread position:
               
343-477
               

               
Cow position:
               
chr10:11497380-11497239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
34, 70
               

               
Conread position:
               
343-493
               

               
Cow position:
               
chr10:16386055-16386203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
35, 53
               

               
Conread position:
               
343-495
               

               
Cow position:
               
chr10:52889079-52889235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
33, 65
               

               
Conread position:
               
343-502
               

               
Cow position:
               
chr10:61426576-61426742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
29, 78
               

               
Conread position:
               
343-514
               

               
Cow position:
               
chr10:52069816-52069993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
35, 75
               

               
Conread position:
               
343-515
               

               
Cow position:
               
chr10:32560861-32560681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
11, 71
               

               
Conread position:
               
343-516
               

               
Cow position:
               
chr10:68566331-68566162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
107, 35
               

               
Conread position:
               
343-526
               

               
Cow position:
               
chr10:23404357-23404171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
35, 76
               

               
Conread position:
               
343-530
               

               
Cow position:
               
chr10:1108304-1108499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
33, 78
               

               
Conread position:
               
343-530
               

               
Cow position:
               
chr10:9794506-9794695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
35, 17
               

               
Conread position:
               
343-532
               

               
Cow position:
               
chr10:38429393-38429582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
35, 65
               

               
Conread position:
               
343-542
               

               
Cow position:
               
chr10:11032351-11032538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
343-542
               

               
Cow position:
               
chr10:19704353-19704560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
35, 76
               

               
Conread position:
               
343-542
               

               
Cow position:
               
chr10:31368576-31368779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
18, 57
               

               
Conread position:
               
343-542
               

               
Cow position:
               
chr10:45728783-45729001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
344-512
               

               
Cow position:
               
chr10:26145253-26145427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
28, 60
               

               
Conread position:
               
344-512
               

               
Cow position:
               
chr10:33240524-33240697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
32, 77
               

               
Conread position:
               
344-518
               

               
Cow position:
               
chr10:30741532-30741357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
99, 64
               

               
Conread position:
               
344-542
               

               
Cow position:
               
chr10:41984729-41984934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
28, 77
               

               
Conread position:
               
345-529
               

               
Cow position:
               
chr10:46067253-46067071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
105, 30
               

               
Conread position:
               
345-530
               

               
Cow position:
               
chr10:19126759-19126939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
31, 73
               

               
Conread position:
               
346-526
               

               
Cow position:
               
chr10:29689177-29689362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
32, 62
               

               
Conread position:
               
346-531
               

               
Cow position:
               
chr10:2406977-2407167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
41, 75
               

               
Conread position:
               
349-527
               

               
Cow position:
               
chr10:62517035-62516850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
28, 62
               

               
Conread position:
               
351-530
               

               
Cow position:
               
chr10:20109800-20109976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
23, 57
               

               
Conread position:
               
353-524
               

               
Cow position:
               
chr10:56705437-56705614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
24, 60
               

               
Conread position:
               
353-530
               

               
Cow position:
               
chr10:60388614-60388800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
26, 59
               

               
Conread position:
               
353-542
               

               
Cow position:
               
chr10:28038789-28038981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
97, 64
               

               
Conread position:
               
355-497
               

               
Cow position:
               
chr10:49586319-49586469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
23, 55
               

               
Conread position:
               
355-530
               

               
Cow position:
               
chr10:16649787-16649961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
95, 53
               

               
Conread position:
               
357-516
               

               
Cow position:
               
chr10:36498347-36498191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
93, 15
               

               
Conread position:
               
360-517
               

               
Cow position:
               
chr10:58746109-58746274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
18, 47
               

               
Conread position:
               
360-530
               

               
Cow position:
               
chr10:8330755-8330582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
53, 133
               

               
Conread position:
               
364-526
               

               
Cow position:
               
chr10:65130351-65130514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
13, 53
               

               
Conread position:
               
365-530
               

               
Cow position:
               
chr10:6490631-6490799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
13, 50
               

               
Conread position:
               
367-530
               

               
Cow position:
               
chr10:28492337-28492503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
82, 36
               

               
Conread position:
               
367-542
               

               
Cow position:
               
chr10:52589551-52589736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
86, 49
               

               
Conread position:
               
372-478
               

               
Cow position:
               
chr10:64364342-64364233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
78, 36
               

               
Conread position:
               
372-530
               

               
Cow position:
               
chr10:27538624-27538466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
78, 63
               

               
Conread position:
               
372-530
               

               
Cow position:
               
chr10:38449188-38449346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
78, 36
               

               
Conread position:
               
372-542
               

               
Cow position:
               
chr10:15873952-15874121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
78, 23
               

               
Conread position:
               
372-542
               

               
Cow position:
               
chr10:26620436-26620609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
78, 44
               

               
Conread position:
               
373-527
               

               
Cow position:
               
chr10:40646790-40646648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
373-540
               

               
Cow position:
               
chr10:58608226-58608059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
78, 43
               

               
Conread position:
               
376-530
               

               
Cow position:
               
chr10:6921839-6921689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
74, 29
               

               
Conread position:
               
386-526
               

               
Cow position:
               
chr10:1478321-1478464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
64, 30
               

               
Conread position:
               
387-542
               

               
Cow position:
               
chr10:30449953-30450111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
66, 29
               

               
Conread position:
               
405-537
               

               
Cow position:
               
chr10:31855429-31855291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
419-542
               

               
Cow position:
               
chr10:25293867-25293740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
287-542
               

               
Cow position:
               
chr11:75874536-75874796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
90, 14
               

               
Conread position:
               
302-509
               

               
Cow position:
               
chr11:40554046-40553832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
15, 30
               

               
Conread position:
               
302-530
               

               
Cow position:
               
chr11:29802389-29802615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
21, 38
               

               
Conread position:
               
313-513
               

               
Cow position:
               
chr11:696157-696360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
66, 9
               

               
Conread position:
               
313-537
               

               
Cow position:
               
chr11:11752319-11752553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
30, 110
               

               
Conread position:
               
315-512
               

               
Cow position:
               
chr11:6729860-6729656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
62, 7
               

               
Conread position:
               
318-511
               

               
Cow position:
               
chr11:56796338-56796542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
18, 106
               

               
Conread position:
               
320-521
               

               
Cow position:
               
chr11:79884681-79884468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
321-538
               

               
Cow position:
               
chr11:18144634-18144853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
21, 89
               

               
Conread position:
               
321-542
               

               
Cow position:
               
chr11:17452406-17452196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
132, 10
               

               
Conread position:
               
323-530
               

               
Cow position:
               
chr11:9083651-9083448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
15, 56
               

               
Conread position:
               
324-497
               

               
Cow position:
               
chr11:40269415-40269590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
50, 19
               

               
Conread position:
               
324-521
               

               
Cow position:
               
chr11:52832543-52832741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 27
               

               
Conread position:
               
325-519
               

               
Cow position:
               
chr11:60985101-60985295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
118, 14
               

               
Conread position:
               
325-527
               

               
Cow position:
               
chr11:16541036-16540836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
125, 25
               

               
Conread position:
               
325-530
               

               
Cow position:
               
chr11:37372493-37372280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
52, 18
               

               
Conread position:
               
325-530
               

               
Cow position:
               
chr11:45890142-45889934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
53, 97
               

               
Conread position:
               
325-530
               

               
Cow position:
               
chr11:50937554-50937774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
22, 208
               

               
Conread position:
               
325-530
               

               
Cow position:
               
chr11:53445953-53445749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
53, 92
               

               
Conread position:
               
326-515
               

               
Cow position:
               
chr11:76391844-76392032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
113, 78
               

               
Conread position:
               
326-542
               

               
Cow position:
               
chr11:18785695-18785910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
48, 17
               

               
Conread position:
               
327-524
               

               
Cow position:
               
chr11:19606488-19606295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
25, 16
               

               
Conread position:
               
327-527
               

               
Cow position:
               
chr11:42519913-42519712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
51, 93
               

               
Conread position:
               
327-537
               

               
Cow position:
               
chr11:5648921-5648710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
20, 95
               

               
Conread position:
               
328-486
               

               
Cow position:
               
chr11:22009204-22009372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
19, 95
               

               
Conread position:
               
328-522
               

               
Cow position:
               
chr11:34136681-34136479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
44, 15
               

               
Conread position:
               
329-518
               

               
Cow position:
               
chr11:58112748-58112944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
43, 93
               

               
Conread position:
               
329-530
               

               
Cow position:
               
chr11:16232753-16232966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
16, 94
               

               
Conread position:
               
331-525
               

               
Cow position:
               
chr11:24216315-24216118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
22, 89
               

               
Conread position:
               
331-542
               

               
Cow position:
               
chr11:21136991-21136775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
46, 87
               

               
Conread position:
               
332-522
               

               
Cow position:
               
chr11:43646235-43646433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
46, 11
               

               
Conread position:
               
332-527
               

               
Cow position:
               
chr11:67236573-67236376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
20, 78
               

               
Conread position:
               
332-530
               

               
Cow position:
               
chr11:40275425-40275630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
46, 89
               

               
Conread position:
               
332-530
               

               
Cow position:
               
chr11:40278917-40279122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
46, 89
               

               
Conread position:
               
333-504
               

               
Cow position:
               
chr11:29978163-29978340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
35, 25
               

               
Conread position:
               
333-515
               

               
Cow position:
               
chr11:65958524-65958714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
15, 90
               

               
Conread position:
               
333-530
               

               
Cow position:
               
chr11:62573833-62574038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
54, 80
               

               
Conread position:
               
334-510
               

               
Cow position:
               
chr11:77008212-77008033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
27, 84
               

               
Conread position:
               
334-512
               

               
Cow position:
               
chr11:44609734-44609554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
45, 87
               

               
Conread position:
               
334-512
               

               
Cow position:
               
chr11:48900665-48900856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
335-532
               

               
Cow position:
               
chr11:53452176-53452376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
32, 76
               

               
Conread position:
               
335-537
               

               
Cow position:
               
chr11:69402078-69402284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
37, 86
               

               
Conread position:
               
335-542
               

               
Cow position:
               
chr11:32438779-32438992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
49, 86
               

               
Conread position:
               
336-527
               

               
Cow position:
               
chr11:54244845-54244648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
42, 85
               

               
Conread position:
               
337-530
               

               
Cow position:
               
chr11:4059890-4060088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
13, 71
               

               
Conread position:
               
337-530
               

               
Cow position:
               
chr11:24626010-24625815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
20, 73
               

               
Conread position:
               
338-533
               

               
Cow position:
               
chr11:65988391-65988196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
38, 80
               

               
Conread position:
               
339-523
               

               
Cow position:
               
chr11:47125713-47125527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
39, 82
               

               
Conread position:
               
339-527
               

               
Cow position:
               
chr11:26468316-26468122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
25, 79
               

               
Conread position:
               
339-530
               

               
Cow position:
               
chr11:63156754-63156948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
18, 62
               

               
Conread position:
               
339-540
               

               
Cow position:
               
chr11:72869652-72869857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
13, 22
               

               
Conread position:
               
339-542
               

               
Cow position:
               
chr11:67871434-67871643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
40, 82
               

               
Conread position:
               
340-511
               

               
Cow position:
               
chr11:30211073-30210894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
340-518
               

               
Cow position:
               
chr11:34642068-34642246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
35, 78
               

               
Conread position:
               
341-530
               

               
Cow position:
               
chr11:50953396-50953592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
37, 80
               

               
Conread position:
               
342-541
               

               
Cow position:
               
chr11:38639285-38639072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
36, 187
               

               
Conread position:
               
343-526
               

               
Cow position:
               
chr11:9056122-9055936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
44, 77
               

               
Conread position:
               
343-527
               

               
Cow position:
               
chr11:11785494-11785306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
8, 16
               

               
Conread position:
               
343-527
               

               
Cow position:
               
chr11:81518015-81518198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
39, 63
               

               
Conread position:
               
343-530
               

               
Cow position:
               
chr11:84795587-84795777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
33, 72
               

               
Conread position:
               
343-537
               

               
Cow position:
               
chr11:20491729-20491537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
29, 52
               

               
Conread position:
               
343-540
               

               
Cow position:
               
chr11:63508576-63508376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
29, 78
               

               
Conread position:
               
343-542
               

               
Cow position:
               
chr11:9368991-9368787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
35, 78
               

               
Conread position:
               
343-542
               

               
Cow position:
               
chr11:19259346-19259554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
11, 80
               

               
Conread position:
               
343-542
               

               
Cow position:
               
chr11:28395641-28395434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
29, 79
               

               
Conread position:
               
343-542
               

               
Cow position:
               
chr11:41272303-41272098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
31, 78
               

               
Conread position:
               
344-530
               

               
Cow position:
               
chr11:19502132-19501940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
34, 77
               

               
Conread position:
               
344-542
               

               
Cow position:
               
chr11:8828468-8828669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
35, 79
               

               
Conread position:
               
344-542
               

               
Cow position:
               
chr11:77546580-77546374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
345-530
               

               
Cow position:
               
chr11:38845104-38845291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
29, 74
               

               
Conread position:
               
345-542
               

               
Cow position:
               
chr11:35669783-35669993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
345-542
               

               
Cow position:
               
chr11:52402626-52402423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
43, 179
               

               
Conread position:
               
346-528
               

               
Cow position:
               
chr11:8840600-8840774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
346-530
               

               
Cow position:
               
chr11:14308797-14308610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
32, 51
               

               
Conread position:
               
346-542
               

               
Cow position:
               
chr11:6041592-6041789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
97, 62
               

               
Conread position:
               
349-512
               

               
Cow position:
               
chr11:56821083-56821254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
30, 74
               

               
Conread position:
               
349-518
               

               
Cow position:
               
chr11:2419930-2419759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
28, 73
               

               
Conread position:
               
351-509
               

               
Cow position:
               
chr11:18913316-18913160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
99, 57
               

               
Conread position:
               
351-521
               

               
Cow position:
               
chr11:61427745-61427574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
99, 66
               

               
Conread position:
               
353-495
               

               
Cow position:
               
chr11:45553908-45553765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
93, 55
               

               
Conread position:
               
353-518
               

               
Cow position:
               
chr11:32072298-32072135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
25, 60
               

               
Conread position:
               
360-542
               

               
Cow position:
               
chr11:50951703-50951516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
12, 51
               

               
Conread position:
               
366-530
               

               
Cow position:
               
chr11:24243932-24243768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
20, 52
               

               
Conread position:
               
367-491
               

               
Cow position:
               
chr11:49218211-49218338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
85, 49
               

               
Conread position:
               
367-518
               

               
Cow position:
               
chr11:27681637-27681484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
85, 49
               

               
Conread position:
               
367-542
               

               
Cow position:
               
chr11:84890572-84890758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
368-520
               

               
Cow position:
               
chr11:85035875-85036030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
13, 52
               

               
Conread position:
               
372-511
               

               
Cow position:
               
chr11:64905129-64904988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
73, 44
               

               
Conread position:
               
372-521
               

               
Cow position:
               
chr11:14941479-14941628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
78, 44
               

               
Conread position:
               
372-522
               

               
Cow position:
               
chr11:35668314-35668475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
80, 44
               

               
Conread position:
               
372-526
               

               
Cow position:
               
chr11:62215061-62215218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
77, 33
               

               
Conread position:
               
372-527
               

               
Cow position:
               
chr11:44815635-44815480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
77, 45
               

               
Conread position:
               
372-530
               

               
Cow position:
               
chr11:7684088-7683939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
80, 44
               

               
Conread position:
               
372-530
               

               
Cow position:
               
chr11:31422862-31422702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
78, 44
               

               
Conread position:
               
372-538
               

               
Cow position:
               
chr11:47193645-47193478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
77, 36
               

               
Conread position:
               
374-527
               

               
Cow position:
               
chr11:25112388-25112543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
76, 40
               

               
Conread position:
               
376-542
               

               
Cow position:
               
chr11:34945944-34946112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
71, 40
               

               
Conread position:
               
386-521
               

               
Cow position:
               
chr11:8232333-8232469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
64, 30
               

               
Conread position:
               
404-512
               

               
Cow position:
               
chr11:79707813-79707702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
410-527
               

               
Cow position:
               
chr11:25861512-25861630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
40, 67
               

               
Conread position:
               
301-527
               

               
Cow position:
               
chr12:32413695-32413467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
46, 69
               

               
Conread position:
               
318-518
               

               
Cow position:
               
chr12:43671872-43671670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
18, 94
               

               
Conread position:
               
318-542
               

               
Cow position:
               
chr12:34161590-34161352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
55, 31
               

               
Conread position:
               
320-527
               

               
Cow position:
               
chr12:25312207-25312415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
24, 79
               

               
Conread position:
               
322-542
               

               
Cow position:
               
chr12:33458304-33458087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
127, 21
               

               
Conread position:
               
324-520
               

               
Cow position:
               
chr12:39781177-39781379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
48, 88
               

               
Conread position:
               
324-527
               

               
Cow position:
               
chr12:29448807-29448600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
14, 20
               

               
Conread position:
               
325-462
               

               
Cow position:
               
chr12:9780113-9780252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
118, 80
               

               
Conread position:
               
326-530
               

               
Cow position:
               
chr12:10763426-10763207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
327-530
               

               
Cow position:
               
chr12:44908175-44907967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
51, 25
               

               
Conread position:
               
328-524
               

               
Cow position:
               
chr12:10846502-10846691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
121, 40
               

               
Conread position:
               
328-527
               

               
Cow position:
               
chr12:4583100-4582899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
50, 21
               

               
Conread position:
               
328-527
               

               
Cow position:
               
chr12:34465840-34466050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
50, 201
               

               
Conread position:
               
328-542
               

               
Cow position:
               
chr12:18768913-18769132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
51, 92
               

               
Conread position:
               
329-526
               

               
Cow position:
               
chr12:40931457-40931658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
53, 92
               

               
Conread position:
               
331-513
               

               
Cow position:
               
chr12:34090280-34090096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
9, 81
               

               
Conread position:
               
331-542
               

               
Cow position:
               
chr12:47804309-47804095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
47, 12
               

               
Conread position:
               
332-448
               

               
Cow position:
               
chr12:38096279-38096159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 78
               

               
Conread position:
               
332-481
               

               
Cow position:
               
chr12:24681976-24681818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
10, 83
               

               
Conread position:
               
332-537
               

               
Cow position:
               
chr12:31198922-31198710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
14, 88
               

               
Conread position:
               
334-521
               

               
Cow position:
               
chr12:15230667-15230857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
41, 71
               

               
Conread position:
               
335-516
               

               
Cow position:
               
chr12:16205876-16205692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
40, 73
               

               
Conread position:
               
336-498
               

               
Cow position:
               
chr12:7274553-7274717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
18, 69
               

               
Conread position:
               
336-518
               

               
Cow position:
               
chr12:9229346-9229538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
339-518
               

               
Cow position:
               
chr12:7996559-7996375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
39, 70
               

               
Conread position:
               
339-526
               

               
Cow position:
               
chr12:1883390-1883574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
110, 69
               

               
Conread position:
               
339-526
               

               
Cow position:
               
chr12:42918612-42918431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
40, 74
               

               
Conread position:
               
339-530
               

               
Cow position:
               
chr12:5497681-5497871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
37, 69
               

               
Conread position:
               
339-542
               

               
Cow position:
               
chr12:24559508-24559296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
15, 83
               

               
Conread position:
               
340-526
               

               
Cow position:
               
chr12:45225841-45226034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
17, 80
               

               
Conread position:
               
340-542
               

               
Cow position:
               
chr12:5680831-5680621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
36, 81
               

               
Conread position:
               
340-542
               

               
Cow position:
               
chr12:31429426-31429630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
52, 37
               

               
Conread position:
               
343-518
               

               
Cow position:
               
chr12:42478154-42477974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
26, 74
               

               
Conread position:
               
343-521
               

               
Cow position:
               
chr12:16850771-16850954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
35, 67
               

               
Conread position:
               
343-525
               

               
Cow position:
               
chr12:5538829-5539010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
106, 49
               

               
Conread position:
               
343-525
               

               
Cow position:
               
chr12:34849715-34849895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
36, 73
               

               
Conread position:
               
343-525
               

               
Cow position:
               
chr12:34852352-34852532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
36, 73
               

               
Conread position:
               
343-527
               

               
Cow position:
               
chr12:11080955-11081145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
31, 79
               

               
Conread position:
               
343-530
               

               
Cow position:
               
chr12:25606851-25606655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
35, 70
               

               
Conread position:
               
343-537
               

               
Cow position:
               
chr12:27055747-27055551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
33, 67
               

               
Conread position:
               
343-542
               

               
Cow position:
               
chr12:7645666-7645863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
35, 76
               

               
Conread position:
               
344-517
               

               
Cow position:
               
chr12:25933824-25933648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
28, 15
               

               
Conread position:
               
344-526
               

               
Cow position:
               
chr12:5658603-5658792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
28, 66
               

               
Conread position:
               
344-528
               

               
Cow position:
               
chr12:3816630-3816439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
33, 69
               

               
Conread position:
               
344-541
               

               
Cow position:
               
chr12:30065076-30064879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
23, 65
               

               
Conread position:
               
346-527
               

               
Cow position:
               
chr12:13657607-13657790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
105, 70
               

               
Conread position:
               
348-542
               

               
Cow position:
               
chr12:3616141-3615940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
30, 160
               

               
Conread position:
               
349-524
               

               
Cow position:
               
chr12:16543440-16543625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
350-526
               

               
Cow position:
               
chr12:43104638-43104468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
99, 58
               

               
Conread position:
               
351-532
               

               
Cow position:
               
chr12:41642568-41642380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
19, 70
               

               
Conread position:
               
354-526
               

               
Cow position:
               
chr12:31258140-31257974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
24, 52
               

               
Conread position:
               
356-533
               

               
Cow position:
               
chr12:48425841-48425662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
22, 54
               

               
Conread position:
               
372-529
               

               
Cow position:
               
chr12:30596579-30596419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
79, 44
               

               
Conread position:
               
372-530
               

               
Cow position:
               
chr12:34242215-34242375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
80, 44
               

               
Conread position:
               
373-537
               

               
Cow position:
               
chr12:31528746-31528912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
77, 43
               

               
Conread position:
               
374-524
               

               
Cow position:
               
chr12:12331401-12331552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
76, 42
               

               
Conread position:
               
299-542
               

               
Cow position:
               
chr13:38631813-38631569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
38, 74
               

               
Conread position:
               
302-537
               

               
Cow position:
               
chr13:9664823-9665063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
52, 96
               

               
Conread position:
               
307-527
               

               
Cow position:
               
chr13:6079655-6079418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
310-542
               

               
Cow position:
               
chr13:32718092-32717856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
68, 14
               

               
Conread position:
               
311-530
               

               
Cow position:
               
chr13:6621815-6621595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
136, 47
               

               
Conread position:
               
323-528
               

               
Cow position:
               
chr13:32773146-32773352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
55, 73
               

               
Conread position:
               
324-532
               

               
Cow position:
               
chr13:22227967-22227762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
54, 89
               

               
Conread position:
               
325-537
               

               
Cow position:
               
chr13:17796152-17796371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
53, 86
               

               
Conread position:
               
325-542
               

               
Cow position:
               
chr13:11794236-11794448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
125, 52
               

               
Conread position:
               
327-519
               

               
Cow position:
               
chr13:18665525-18665721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
51, 94
               

               
Conread position:
               
332-490
               

               
Cow position:
               
chr13:25206910-25207070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
118, 84
               

               
Conread position:
               
332-525
               

               
Cow position:
               
chr13:1958798-1958999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
17, 91
               

               
Conread position:
               
332-526
               

               
Cow position:
               
chr13:11768253-11768051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
39, 81
               

               
Conread position:
               
332-530
               

               
Cow position:
               
chr13:34761476-34761673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
47, 85
               

               
Conread position:
               
332-542
               

               
Cow position:
               
chr13:25537411-25537632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
43, 84
               

               
Conread position:
               
332-542
               

               
Cow position:
               
chr13:33161203-33160989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
22, 90
               

               
Conread position:
               
333-532
               

               
Cow position:
               
chr13:18550797-18550999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
45, 88
               

               
Conread position:
               
333-542
               

               
Cow position:
               
chr13:49200430-49200642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
19, 78
               

               
Conread position:
               
334-496
               

               
Cow position:
               
chr13:57341496-57341330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
38, 9
               

               
Conread position:
               
334-518
               

               
Cow position:
               
chr13:1558720-1558530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
44, 87
               

               
Conread position:
               
334-527
               

               
Cow position:
               
chr13:54094604-54094804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
44, 15
               

               
Conread position:
               
334-530
               

               
Cow position:
               
chr13:13578240-13578036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
42, 9
               

               
Conread position:
               
334-537
               

               
Cow position:
               
chr13:33281803-33282008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
10, 25
               

               
Conread position:
               
335-521
               

               
Cow position:
               
chr13:47188237-47188424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
19, 74
               

               
Conread position:
               
336-541
               

               
Cow position:
               
chr13:29820411-29820199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
42, 85
               

               
Conread position:
               
337-537
               

               
Cow position:
               
chr13:12521982-12521775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
41, 84
               

               
Conread position:
               
337-541
               

               
Cow position:
               
chr13:34995533-34995319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
41, 85
               

               
Conread position:
               
339-504
               

               
Cow position:
               
chr13:49457483-49457655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
36, 73
               

               
Conread position:
               
339-523
               

               
Cow position:
               
chr13:2803267-2803462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
38, 72
               

               
Conread position:
               
339-524
               

               
Cow position:
               
chr13:47502910-47502724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
33, 72
               

               
Conread position:
               
339-527
               

               
Cow position:
               
chr13:20839366-20839560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
29, 19
               

               
Conread position:
               
339-530
               

               
Cow position:
               
chr13:22075469-22075666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
38, 82
               

               
Conread position:
               
340-524
               

               
Cow position:
               
chr13:10932355-10932541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
33, 90
               

               
Conread position:
               
340-527
               

               
Cow position:
               
chr13:7010275-7010461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
38, 78
               

               
Conread position:
               
340-540
               

               
Cow position:
               
chr13:661837-661638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
38, 81
               

               
Conread position:
               
343-526
               

               
Cow position:
               
chr13:20180218-20180406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
35, 70
               

               
Conread position:
               
343-527
               

               
Cow position:
               
chr13:12745475-12745665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
30, 79
               

               
Conread position:
               
343-530
               

               
Cow position:
               
chr13:32657185-32657376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
107, 27
               

               
Conread position:
               
343-533
               

               
Cow position:
               
chr13:8822672-8822862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
35, 59
               

               
Conread position:
               
343-538
               

               
Cow position:
               
chr13:31852570-31852767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
34, 65
               

               
Conread position:
               
343-542
               

               
Cow position:
               
chr13:15091106-15090902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
14, 78
               

               
Conread position:
               
343-542
               

               
Cow position:
               
chr13:47322607-47322401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
35, 21
               

               
Conread position:
               
344-505
               

               
Cow position:
               
chr13:26523133-26522965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
34, 24
               

               
Conread position:
               
344-527
               

               
Cow position:
               
chr13:15945279-15945475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
344-530
               

               
Cow position:
               
chr13:46430490-46430312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
106, 34
               

               
Conread position:
               
344-537
               

               
Cow position:
               
chr13:29034621-29034804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
344-542
               

               
Cow position:
               
chr13:9161720-9161931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
33, 78
               

               
Conread position:
               
345-542
               

               
Cow position:
               
chr13:20466481-20466277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
33, 76
               

               
Conread position:
               
346-498
               

               
Cow position:
               
chr13:58762795-58762636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
28, 67
               

               
Conread position:
               
353-521
               

               
Cow position:
               
chr13:25435311-25435135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
24, 68
               

               
Conread position:
               
353-526
               

               
Cow position:
               
chr13:43156043-43155863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
26, 68
               

               
Conread position:
               
353-527
               

               
Cow position:
               
chr13:43167219-43167039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
25, 58
               

               
Conread position:
               
353-542
               

               
Cow position:
               
chr13:32904592-32904787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
25, 44
               

               
Conread position:
               
355-497
               

               
Cow position:
               
chr13:21403587-21403446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
95, 16
               

               
Conread position:
               
361-530
               

               
Cow position:
               
chr13:60651081-60650908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
91, 46
               

               
Conread position:
               
365-542
               

               
Cow position:
               
chr13:46312182-46312009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
90, 42
               

               
Conread position:
               
367-527
               

               
Cow position:
               
chr13:20825863-20826019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
82, 50
               

               
Conread position:
               
368-518
               

               
Cow position:
               
chr13:24280090-24280241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
82, 5
               

               
Conread position:
               
372-528
               

               
Cow position:
               
chr13:32535492-32535652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
78, 47
               

               
Conread position:
               
372-537
               

               
Cow position:
               
chr13:12233617-12233446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
77, 36
               

               
Conread position:
               
372-537
               

               
Cow position:
               
chr13:32167474-32167312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
78, 44
               

               
Conread position:
               
372-542
               

               
Cow position:
               
chr13:21628044-21627876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
149, 44
               

               
Conread position:
               
372-542
               

               
Cow position:
               
chr13:49847762-49847931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
78, 38
               

               
Conread position:
               
372-542
               

               
Cow position:
               
chr13:52569167-52568994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
78, 44
               

               
Conread position:
               
373-525
               

               
Cow position:
               
chr13:58621107-58620956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
77, 43
               

               
Conread position:
               
374-526
               

               
Cow position:
               
chr13:52748956-52748806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
73, 43
               

               
Conread position:
               
376-530
               

               
Cow position:
               
chr13:53788268-53788111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
70, 40
               

               
Conread position:
               
377-529
               

               
Cow position:
               
chr13:14717497-14717344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
75, 39
               

               
Conread position:
               
390-527
               

               
Cow position:
               
chr13:3016319-3016182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
60, 26
               

               
Conread position:
               
308-527
               

               
Cow position:
               
chr14:28565299-28565520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
34, 59
               

               
Conread position:
               
319-521
               

               
Cow position:
               
chr14:41531825-41531620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
58, 24
               

               
Conread position:
               
323-524
               

               
Cow position:
               
chr14:16207668-16207450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
325-510
               

               
Cow position:
               
chr14:38688391-38688204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
49, 88
               

               
Conread position:
               
327-511
               

               
Cow position:
               
chr14:39058418-39058615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
14, 95
               

               
Conread position:
               
327-519
               

               
Cow position:
               
chr14:9065734-9065935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
18, 54
               

               
Conread position:
               
328-527
               

               
Cow position:
               
chr14:48212929-48213131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
69, 14
               

               
Conread position:
               
332-511
               

               
Cow position:
               
chr14:13809784-13809975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
332-541
               

               
Cow position:
               
chr14:44861383-44861172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
46, 89
               

               
Conread position:
               
332-542
               

               
Cow position:
               
chr14:15990077-15990281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
11, 80
               

               
Conread position:
               
333-523
               

               
Cow position:
               
chr14:36081065-36080872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
45, 80
               

               
Conread position:
               
333-527
               

               
Cow position:
               
chr14:47604445-47604249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
117, 75
               

               
Conread position:
               
333-537
               

               
Cow position:
               
chr14:6816091-6816285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
19, 77
               

               
Conread position:
               
334-513
               

               
Cow position:
               
chr14:20795628-20795809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
44, 79
               

               
Conread position:
               
335-518
               

               
Cow position:
               
chr14:37884548-37884368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
37, 86
               

               
Conread position:
               
335-540
               

               
Cow position:
               
chr14:2189488-2189696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
43, 8
               

               
Conread position:
               
335-542
               

               
Cow position:
               
chr14:20865457-20865255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
36, 78
               

               
Conread position:
               
335-542
               

               
Cow position:
               
chr14:22459999-22459800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
22, 35
               

               
Conread position:
               
339-518
               

               
Cow position:
               
chr14:26153413-26153228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
34, 82
               

               
Conread position:
               
339-524
               

               
Cow position:
               
chr14:44084640-44084441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
339-526
               

               
Cow position:
               
chr14:10692407-10692219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
12, 41
               

               
Conread position:
               
339-530
               

               
Cow position:
               
chr14:6985097-6984912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
39, 69
               

               
Conread position:
               
340-518
               

               
Cow position:
               
chr14:44031891-44032077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
32, 81
               

               
Conread position:
               
340-529
               

               
Cow position:
               
chr14:26960557-26960367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
36, 68
               

               
Conread position:
               
340-533
               

               
Cow position:
               
chr14:23050755-23050563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
38, 72
               

               
Conread position:
               
343-476
               

               
Cow position:
               
chr14:7613922-7614054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
35, 70
               

               
Conread position:
               
343-508
               

               
Cow position:
               
chr14:38355049-38355220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
30, 57
               

               
Conread position:
               
343-527
               

               
Cow position:
               
chr14:18979333-18979151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
107, 39
               

               
Conread position:
               
343-527
               

               
Cow position:
               
chr14:20701957-20701769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
33, 70
               

               
Conread position:
               
343-527
               

               
Cow position:
               
chr14:26493732-26493924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
29, 61
               

               
Conread position:
               
343-527
               

               
Cow position:
               
chr14:47519892-47519702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
34, 78
               

               
Conread position:
               
343-529
               

               
Cow position:
               
chr14:43031656-43031849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
35, 78
               

               
Conread position:
               
343-538
               

               
Cow position:
               
chr14:21691416-21691214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
31, 78
               

               
Conread position:
               
343-542
               

               
Cow position:
               
chr14:6441767-6441974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
36, 78
               

               
Conread position:
               
343-542
               

               
Cow position:
               
chr14:19023037-19022833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
30, 57
               

               
Conread position:
               
343-542
               

               
Cow position:
               
chr14:26108493-26108698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
29, 55
               

               
Conread position:
               
344-527
               

               
Cow position:
               
chr14:37679142-37678953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
34, 61
               

               
Conread position:
               
345-530
               

               
Cow position:
               
chr14:28605094-28605286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
28, 77
               

               
Conread position:
               
345-542
               

               
Cow position:
               
chr14:35700290-35700489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
34, 68
               

               
Conread position:
               
346-507
               

               
Cow position:
               
chr14:26805189-26805020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
32, 64
               

               
Conread position:
               
346-527
               

               
Cow position:
               
chr14:31784842-31785015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
348-527
               

               
Cow position:
               
chr14:33553060-33553234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
19, 57
               

               
Conread position:
               
353-516
               

               
Cow position:
               
chr14:45849347-45849180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
24, 60
               

               
Conread position:
               
353-530
               

               
Cow position:
               
chr14:11615352-11615167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
34, 65
               

               
Conread position:
               
356-516
               

               
Cow position:
               
chr14:46393080-46393235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
85, 20
               

               
Conread position:
               
357-542
               

               
Cow position:
               
chr14:46997907-46998105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
360-527
               

               
Cow position:
               
chr14:47551397-47551227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
15, 57
               

               
Conread position:
               
372-521
               

               
Cow position:
               
chr14:7648126-7647974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
78, 44
               

               
Conread position:
               
372-542
               

               
Cow position:
               
chr14:12559583-12559415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
78, 23
               

               
Conread position:
               
374-537
               

               
Cow position:
               
chr14:23107218-23107384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
76, 42
               

               
Conread position:
               
375-540
               

               
Cow position:
               
chr14:21084237-21084404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
78, 41
               

               
Conread position:
               
376-526
               

               
Cow position:
               
chr14:20045449-20045600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
76, 10
               

               
Conread position:
               
392-537
               

               
Cow position:
               
chr14:20435305-20435452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
58, 24
               

               
Conread position:
               
294-527
               

               
Cow position:
               
chr15:10569242-10569012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
83, 14
               

               
Conread position:
               
300-542
               

               
Cow position:
               
chr15:20482984-20482735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
42, 57
               

               
Conread position:
               
304-490
               

               
Cow position:
               
chr15:14323543-14323356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
72, 20
               

               
Conread position:
               
324-532
               

               
Cow position:
               
chr15:15214903-15215119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
33, 88
               

               
Conread position:
               
325-525
               

               
Cow position:
               
chr15:47821269-47821470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
53, 18
               

               
Conread position:
               
325-526
               

               
Cow position:
               
chr15:23548100-23547897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
28, 84
               

               
Conread position:
               
326-530
               

               
Cow position:
               
chr15:31599228-31599430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
42, 23
               

               
Conread position:
               
327-532
               

               
Cow position:
               
chr15:49238099-49237894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
51, 90
               

               
Conread position:
               
328-492
               

               
Cow position:
               
chr15:2117773-2117946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
16, 88
               

               
Conread position:
               
329-492
               

               
Cow position:
               
chr15:23992742-23992913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
46, 92
               

               
Conread position:
               
332-509
               

               
Cow position:
               
chr15:39916587-39916769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
40, 89
               

               
Conread position:
               
332-512
               

               
Cow position:
               
chr15:31483263-31483452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
22, 90
               

               
Conread position:
               
332-518
               

               
Cow position:
               
chr15:10189261-10189447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
46, 83
               

               
Conread position:
               
332-532
               

               
Cow position:
               
chr15:20370828-20370625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
45, 19
               

               
Conread position:
               
332-538
               

               
Cow position:
               
chr15:24411315-24411527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
22, 82
               

               
Conread position:
               
333-530
               

               
Cow position:
               
chr15:30958314-30958115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
113, 64
               

               
Conread position:
               
334-528
               

               
Cow position:
               
chr15:8230665-8230468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
98, 83
               

               
Conread position:
               
334-528
               

               
Cow position:
               
chr15:17788008-17788204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
38, 79
               

               
Conread position:
               
334-530
               

               
Cow position:
               
chr15:450153-449954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
44, 77
               

               
Conread position:
               
334-530
               

               
Cow position:
               
chr15:11957443-11957639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
118, 18
               

               
Conread position:
               
335-518
               

               
Cow position:
               
chr15:20282610-20282435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
335-525
               

               
Cow position:
               
chr15:24977274-24977083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
43, 14
               

               
Conread position:
               
335-527
               

               
Cow position:
               
chr15:35967585-35967388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
43, 74
               

               
Conread position:
               
335-530
               

               
Cow position:
               
chr15:6749946-6749749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
43, 21
               

               
Conread position:
               
335-542
               

               
Cow position:
               
chr15:14758351-14758142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
43, 87
               

               
Conread position:
               
336-530
               

               
Cow position:
               
chr15:8021955-8022150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
42, 83
               

               
Conread position:
               
336-530
               

               
Cow position:
               
chr15:23109383-23109183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
40, 7
               

               
Conread position:
               
337-501
               

               
Cow position:
               
chr15:20402643-20402474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
42, 86
               
339-529UCSC Genome Browser

               
Conread position:
               

               

               
Cow position:
               
chr15:37918548-37918744 (view  custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
40, 72
               
339-533UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr15:3571685-3571882 (view  custom track)

               
               
               
Alignm length:
200

               
               
               
Alignm identity:
147

               
               
               
Alignm E-value:
8e-31

               
               
               
Alignm gaps (pig, cow):
8, 78
340-527UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr15:34255815-34255632 (view  custom track)

               
               
               
Alignm length:
190

               
               
               
Alignm identity:
149

               
               
               
Alignm E-value:
1e-36

               
               
               
Alignm gaps (pig, cow):
41, 78

               
               
               Conread position:340-542
               
               
               Cow position:chr15:1017845-1017634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:341-542
               
               
               Cow position:chr15:43611988-43612194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):37, 80

               
               
               Conread position:343-524
               
               
               Cow position:chr15:52480040-52480222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):11, 74

               
               
               Conread position:343-525
               
               
               Cow position:chr15:12170150-12170340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):35, 78

               
               
               Conread position:343-529
               
               
               Cow position:chr15:24284891-24285078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):30, 56

               
               
               Conread position:343-537
               
               
               Cow position:chr15:20777923-20778124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):35, 70

               
               
               Conread position:343-542
               
               
               Cow position:chr15:19725803-19725608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):35, 70

               
               
               Conread position:344-542
               
               
               Cow position:chr15:44252273-44252473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):28, 77

               
               
               Conread position:344-542
               
               
               Cow position:chr15:50177016-50177222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):33, 77

               
               
               Conread position:345-518
               
               
               Cow position:chr15:7980099-7980273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):33, 76

               
               
               Conread position:345-521
               
               
               Cow position:chr15:34037278-34037099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):104, 59

               
               
               Conread position:345-542
               
               
               Cow position:chr15:48486550-48486745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):104, 60

               
               
               Conread position:353-518
               
               
               Cow position:chr15:25688882-25689054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):24, 67

               
               
               Conread position:353-542
               
               
               Cow position:chr15:9971062-9970866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):24, 68

               
               
               Conread position:353-542
               
               
               Cow position:chr15:26934033-26933837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):25, 69

               
               
               Conread position:355-518
               
               
               Cow position:chr15:24864345-24864182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):23, 54

               
               
               Conread position:357-530
               
               
               Cow position:chr15:39894518-39894687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):17, 64

               
               
               Conread position:370-501
               
               
               Cow position:chr15:28177392-28177525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):83, 36

               
               
               Conread position:372-508
               
               
               Cow position:chr15:7059464-7059327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):71, 20

               
               
               Conread position:372-527
               
               
               Cow position:chr15:7962022-7962175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):88, 45

               
               
               Conread position:372-530
               
               
               Cow position:chr15:9494351-9494196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:372-530
               
               
               Cow position:chr15:10303162-10303322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):78, 34

               
               
               Conread position:372-530
               
               
               Cow position:chr15:31545408-31545248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):67, 41

               
               
               Conread position:372-530
               
               
               Cow position:chr15:31617066-31616906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):67, 36

               
               
               Conread position:372-542
               
               
               Cow position:chr15:27863386-27863214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):80, 33

               
               
               Conread position:374-528
               
               
               Cow position:chr15:19280150-19279990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):23, 43

               
               
               Conread position:376-530
               
               
               Cow position:chr15:26421655-26421501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):6, 42

               
               
               Conread position:376-542
               
               
               Cow position:chr15:42195318-42195155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):73, 17

               
               
               Conread position:377-530
               
               
               Cow position:chr15:9178257-9178106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):73, 37

               
               
               Conread position:386-537
               
               
               Cow position:chr15:38322789-38322942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):64, 30

               
               
               Conread position:387-542
               
               
               Cow position:chr15:40498338-40498181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):63, 29

               
               
               Conread position:392-526
               
               
               Cow position:chr15:32011905-32011776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):57, 21

               
               
               Conread position:306-528
               
               
               Cow position:chr16:18692933-18693159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):62, 52

               
               
               Conread position:310-527
               
               
               Cow position:chr16:33121818-33121603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):68, 11

               
               
               Conread position:312-478
               
               
               Cow position:chr16:55070305-55070480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):67, 96

               
               
               Conread position:313-448
               
               
               Cow position:chr16:23065864-23065999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):17, 97

               
               
               Conread position:313-501
               
               
               Cow position:chr16:15809187-15808996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):39, 102

               
               
               Conread position:320-540
               
               
               Cow position:chr16:13660029-13660253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):58, 5

               
               
               Conread position:322-530
               
               
               Cow position:chr16:5512007-5511796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):24, 10

               
               
               Conread position:325-524
               
               
               Cow position:chr16:8025650-8025860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):49, 18

               
               
               Conread position:325-526
               
               
               Cow position:chr16:30639527-30639330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):23, 98

               
               
               Conread position:325-530
               
               
               Cow position:chr16:44898556-44898759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):17, 57

               
               
               Conread position:326-530
               
               
               Cow position:chr16:44580877-44581083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):124, 25

               
               
               Conread position:326-542
               
               
               Cow position:chr16:23025536-23025324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):21, 84

               
               
               Conread position:327-504
               
               
               Cow position:chr16:42629247-42629428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):50, 32

               
               
               Conread position:332-512
               
               
               Cow position:chr16:10611440-10611615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):118, 11

               
               
               Conread position:332-518
               
               
               Cow position:chr16:50114385-50114187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:332-525
               
               
               Cow position:chr16:27261765-27261952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):120, 72

               
               
               Conread position:333-527
               
               
               Cow position:chr16:28454107-28454296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):109, 45

               
               
               Conread position:333-530
               
               
               Cow position:chr16:44557-44360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):45, 88

               
               
               Conread position:334-537
               
               
               Cow position:chr16:228305-228513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):38, 66

               
               
               Conread position:334-542
               
               
               Cow position:chr16:22808363-22808584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:334-542
               
               
               Cow position:chr16:56445229-56445435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):12, 50

               
               
               Conread position:335-507
               
               
               Cow position:chr16:4102630-4102819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:336-501
               
               
               Cow position:chr16:47116255-47116088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):114, 70

               
               
               Conread position:336-524
               
               
               Cow position:chr16:29655523-29655320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:336-526
               
               
               Cow position:chr16:52577648-52577451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):35, 85

               
               
               Conread position:338-488
               
               
               Cow position:chr16:10406391-10406550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):40, 75

               
               
               Conread position:339-478
               
               
               Cow position:chr16:11772062-11772208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):38, 74

               
               
               Conread position:340-515
               
               
               Cow position:chr16:43762318-43762495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):38, 79

               
               
               Conread position:340-527
               
               
               Cow position:chr16:14974363-14974548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):112, 64

               
               
               Conread position:340-530
               
               
               Cow position:chr16:48493368-48493169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):14, 82

               
               
               Conread position:340-533
               
               
               Cow position:chr16:16055875-16056073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):34, 60

               
               
               Conread position:343-527
               
               
               Cow position:chr16:21462204-21462023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):15, 67

               
               
               Conread position:343-528
               
               
               Cow position:chr16:11085198-11085390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):17, 81

               
               
               Conread position:343-530
               
               
               Cow position:chr16:19977138-19976960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):107, 35

               
               
               Conread position:343-530
               
               
               Cow position:chr16:27723408-27723213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):24, 15

               
               
               Conread position:343-540
               
               
               Cow position:chr16:53267906-53267705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):34, 55

               
               
               Conread position:343-542
               
               
               Cow position:chr16:8322794-8323005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):35, 21

               
               
               Conread position:344-542
               
               
               Cow position:chr16:19002909-19003110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):34, 77

               
               
               Conread position:345-542
               
               
               Cow position:chr16:37719335-37719135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):105, 63

               
               
               Conread position:345-542
               
               
               Cow position:chr16:42340377-42340173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:345-542
               
               
               Cow position:chr16:45693324-45693126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):33, 51

               
               
               Conread position:346-511
               
               
               Cow position:chr16:56283125-56282955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):33, 75

               
               
               Conread position:351-541
               
               
               Cow position:chr16:38621130-38620935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):22, 69

               
               
               Conread position:352-530
               
               
               Cow position:chr16:689877-689693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):22, 39

               
               
               Conread position:353-516
               
               
               Cow position:chr16:18557090-18557261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):21, 68

               
               
               Conread position:353-517
               
               
               Cow position:chr16:3566335-3566171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):19, 59

               
               
               Conread position:355-530
               
               
               Cow position:chr16:49321126-49320954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:355-542
               
               
               Cow position:chr16:26134202-26134391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):108, 47

               
               
               Conread position:360-530
               
               
               Cow position:chr16:28266871-28267033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):90, 26

               
               
               Conread position:362-527
               
               
               Cow position:chr16:10303591-10303753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):88, 54

               
               
               Conread position:372-518
               
               
               Cow position:chr16:5580464-5580315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):24, 35

               
               
               Conread position:372-518
               
               
               Cow position:chr16:27014050-27013897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):61, 21

               
               
               Conread position:372-521
               
               
               Cow position:chr16:44693035-44693185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):78, 44

               
               
               Conread position:372-526
               
               
               Cow position:chr16:23163426-23163582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):75, 44

               
               
               Conread position:372-533
               
               
               Cow position:chr16:47909193-47909357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):71, 44

               
               
               Conread position:372-542
               
               
               Cow position:chr16:15806101-15805932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):78, 50

               
               
               Conread position:372-542
               
               
               Cow position:chr16:15938382-15938551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):82, 36

               
               
               Conread position:372-542
               
               
               Cow position:chr16:23066804-23066640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):78, 36

               
               
               Conread position:372-542
               
               
               Cow position:chr16:28827028-28827201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):70, 43

               
               
               Conread position:372-542
               
               
               Cow position:chr16:36930169-36930338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):71, 42

               
               
               Conread position:373-516
               
               
               Cow position:chr16:23978285-23978430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):79, 43

               
               
               Conread position:375-526
               
               
               Cow position:chr16:44722889-44723036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):74, 41

               
               
               Conread position:387-527
               
               
               Cow position:chr16:41711806-41711668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):62, 31

               
               
               Conread position:387-542
               
               
               Cow position:chr16:9445094-9444939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):64, 29

               
               
               Conread position:397-527
               
               
               Cow position:chr16:56104789-56104919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):53, 19

               
               
               Conread position:418-542
               
               
               Cow position:chr16:4979908-4979779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:436-537
               
               
               Cow position:chr16:17606381-17606280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:83
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:303-542
               
               
               Cow position:chr17:32457310-32457548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):74, 14

               
               
               Conread position:324-524
               
               
               Cow position:chr17:12342240-12342446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):18, 54

               
               
               Conread position:324-530
               
               
               Cow position:chr17:20216412-20216197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):12, 89

               
               
               Conread position:325-504
               
               
               Cow position:chr17:1525586-1525768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):118, 91

               
               
               Conread position:325-527
               
               
               Cow position:chr17:10769269-10769479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):53, 96

               
               
               Conread position:325-530
               
               
               Cow position:chr17:9748981-9748776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):33, 49

               
               
               Conread position:325-530
               
               
               Cow position:chr17:38139749-38139538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):45, 70

               
               
               Conread position:326-530
               
               
               Cow position:chr17:15634646-15634852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):52, 95

               
               
               Conread position:326-533
               
               
               Cow position:chr17:35387763-35387975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):47, 17

               
               
               Conread position:327-512
               
               
               Cow position:chr17:43284885-43284693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):20, 76

               
               
               Conread position:328-521
               
               
               Cow position:chr17:3619849-3620048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 85

               
               
               Conread position:332-512
               
               
               Cow position:chr17:20234449-20234258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:332-523
               
               
               Cow position:chr17:27819527-27819332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):20, 86

               
               
               Conread position:332-526
               
               
               Cow position:chr17:12768578-12768773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):118, 84

               
               
               Conread position:332-526
               
               
               Cow position:chr17:30236423-30236231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):44, 19

               
               
               Conread position:332-542
               
               
               Cow position:chr17:2271230-2271017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):44, 82

               
               
               Conread position:333-498
               
               
               Cow position:chr17:8094074-8093908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):117, 66

               
               
               Conread position:333-521
               
               
               Cow position:chr17:19239647-19239841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):45, 89

               
               
               Conread position:334-516
               
               
               Cow position:chr17:10314652-10314464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):38, 9

               
               
               Conread position:334-516
               
               
               Cow position:chr17:11655611-11655420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):20, 88

               
               
               Conread position:334-526
               
               
               Cow position:chr17:7614145-7614346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):38, 79

               
               
               Conread position:334-542
               
               
               Cow position:chr17:18568715-18568916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:335-525
               
               
               Cow position:chr17:36400327-36400136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):115, 8

               
               
               Conread position:335-532
               
               
               Cow position:chr17:36818267-36818067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):32, 77

               
               
               Conread position:335-542
               
               
               Cow position:chr17:27505326-27505114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):43, 8

               
               
               Conread position:336-507
               
               
               Cow position:chr17:33925787-33925966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 88

               
               
               Conread position:337-527
               
               
               Cow position:chr17:13715809-13716002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):13, 23

               
               
               Conread position:338-497
               
               
               Cow position:chr17:9927587-9927420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):15, 84

               
               
               Conread position:339-491
               
               
               Cow position:chr17:25338390-25338234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 79

               
               
               Conread position:339-524
               
               
               Cow position:chr17:14278290-14278097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):40, 82

               
               
               Conread position:339-530
               
               
               Cow position:chr17:23803683-23803489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):15, 63

               
               
               Conread position:339-541
               
               
               Cow position:chr17:26162199-26162403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):39, 80

               
               
               Conread position:339-542
               
               
               Cow position:chr17:7205647-7205438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):15, 82

               
               
               Conread position:340-492
               
               
               Cow position:chr17:37043198-37043349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):12, 20

               
               
               Conread position:340-507
               
               
               Cow position:chr17:7163667-7163843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 79

               
               
               Conread position:341-515
               
               
               Cow position:chr17:8215413-8215236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):16, 73

               
               
               Conread position:341-526
               
               
               Cow position:chr17:36216961-36217149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):32, 70

               
               
               Conread position:341-530
               
               
               Cow position:chr17:13229602-13229408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):36, 83

               
               
               Conread position:341-540
               
               
               Cow position:chr17:5360228-5360420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):37, 80

               
               
               Conread position:341-542
               
               
               Cow position:chr17:36173741-36173955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):13, 178

               
               
               Conread position:343-522
               
               
               Cow position:chr17:6996501-6996318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):33, 79

               
               
               Conread position:343-526
               
               
               Cow position:chr17:143957-144142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):35, 80

               
               
               Conread position:343-530
               
               
               Cow position:chr17:31798226-31798418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):35, 78

               
               
               Conread position:343-537
               
               
               Cow position:chr17:728138-728331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):112, 65

               
               
               Conread position:344-525
               
               
               Cow position:chr17:10221069-10220885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):34, 7

               
               
               Conread position:345-526
               
               
               Cow position:chr17:37778414-37778586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):32, 74

               
               
               Conread position:346-526
               
               
               Cow position:chr17:39016317-39016132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):28, 70

               
               
               Conread position:349-530
               
               
               Cow position:chr17:7595362-7595184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):101, 67

               
               
               Conread position:351-533
               
               
               Cow position:chr17:1328807-1328622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):17, 7

               
               
               Conread position:353-515
               
               
               Cow position:chr17:8279502-8279663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):96, 55

               
               
               Conread position:353-542
               
               
               Cow position:chr17:23147631-23147437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):23, 39

               
               
               Conread position:353-542
               
               
               Cow position:chr17:37138966-37138780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):96, 55

               
               
               Conread position:360-526
               
               
               Cow position:chr17:18887575-18887733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):90, 48

               
               
               Conread position:371-525
               
               
               Cow position:chr17:3706448-3706601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):73, 26

               
               
               Conread position:372-526
               
               
               Cow position:chr17:34870269-34870113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):80, 44

               
               
               Conread position:372-530
               
               
               Cow position:chr17:33913385-33913546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):74, 47

               
               
               Conread position:373-542
               
               
               Cow position:chr17:19891812-19891641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):77, 39

               
               
               Conread position:374-540
               
               
               Cow position:chr17:24580108-24580275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):78, 21

               
               
               Conread position:376-525
               
               
               Cow position:chr17:21373859-21373712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):74, 40

               
               
               Conread position:385-507
               
               
               Cow position:chr17:8926041-8926165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):56, 20

               
               
               Conread position:385-530
               
               
               Cow position:chr17:41891887-41892032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):65, 10

               
               
               Conread position:391-516
               
               
               Cow position:chr17:13600810-13600937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):59, 8

               
               
               Conread position:305-475
               
               
               Cow position:chr18:14520219-14520046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):31, 5

               
               
               Conread position:318-542
               
               
               Cow position:chr18:47525584-47525351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):54, 31

               
               
               Conread position:324-515
               
               
               Cow position:chr18:48036986-48036789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):54, 85

               
               
               Conread position:325-542
               
               
               Cow position:chr18:55696860-55697075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):53, 93

               
               
               Conread position:326-537
               
               
               Cow position:chr18:23714705-23714935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):52, 17

               
               
               Conread position:327-517
               
               
               Cow position:chr18:51587381-51587575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):27, 88

               
               
               Conread position:327-542
               
               
               Cow position:chr18:26373087-26372864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):28, 95

               
               
               Conread position:330-530
               
               
               Cow position:chr18:50700847-50700643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):48, 81

               
               
               Conread position:331-524
               
               
               Cow position:chr18:50359505-50359293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:332-512
               
               
               Cow position:chr18:28297702-28297889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):15, 81

               
               
               Conread position:332-526
               
               
               Cow position:chr18:39503537-39503735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):22, 84

               
               
               Conread position:332-530
               
               
               Cow position:chr18:15689441-15689244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):118, 20

               
               
               Conread position:332-530
               
               
               Cow position:chr18:45961111-45961316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):21, 88

               
               
               Conread position:334-523
               
               
               Cow position:chr18:48717787-48717975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):116, 79

               
               
               Conread position:335-527
               
               
               Cow position:chr18:15831446-15831634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):115, 8

               
               
               Conread position:335-530
               
               
               Cow position:chr18:40202652-40202848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):14, 87

               
               
               Conread position:335-533
               
               
               Cow position:chr18:10101642-10101444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):37, 14

               
               
               Conread position:336-526
               
               
               Cow position:chr18:10687441-10687637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):40, 19

               
               
               Conread position:336-542
               
               
               Cow position:chr18:20126951-20127163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):40, 82

               
               
               Conread position:339-537
               
               
               Cow position:chr18:33842931-33843137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):39, 72

               
               
               Conread position:340-526
               
               
               Cow position:chr18:21706038-21706220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):110, 20

               
               
               Conread position:340-530
               
               
               Cow position:chr18:22411459-22411656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):38, 77

               
               
               Conread position:340-542
               
               
               Cow position:chr18:6158065-6157861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):15, 68

               
               
               Conread position:340-542
               
               
               Cow position:chr18:16841898-16842116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):15, 82

               
               
               Conread position:340-542
               
               
               Cow position:chr18:26842945-26843155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):35, 82

               
               
               Conread position:340-542
               
               
               Cow position:chr18:51271592-51271809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 82

               
               
               Conread position:343-467
               
               
               Cow position:chr18:16448688-16448562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):107, 65

               
               
               Conread position:343-498
               
               
               Cow position:chr18:29949894-29949737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):57, 39

               
               
               Conread position:343-530
               
               
               Cow position:chr18:29796280-29796473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):33, 78

               
               
               Conread position:343-530
               
               
               Cow position:chr18:43712196-43712003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):35, 78

               
               
               Conread position:343-539
               
               
               Cow position:chr18:6075240-6075449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:343-541
               
               
               Cow position:chr18:44493336-44493539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):35, 78

               
               
               Conread position:344-494
               
               
               Cow position:chr18:44408558-44408408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):108, 7

               
               
               Conread position:344-512
               
               
               Cow position:chr18:21140051-21139874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):30, 77

               
               
               Conread position:344-541
               
               
               Cow position:chr18:2438618-2438818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):104, 72

               
               
               Conread position:344-541
               
               
               Cow position:chr18:35767317-35767118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):23, 66

               
               
               Conread position:345-490
               
               
               Cow position:chr18:36478475-36478330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):90, 71

               
               
               Conread position:345-542
               
               
               Cow position:chr18:25970499-25970688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):104, 61

               
               
               Conread position:348-527
               
               
               Cow position:chr18:4578343-4578527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):23, 46

               
               
               Conread position:349-517
               
               
               Cow position:chr18:43554938-43555106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):102, 48

               
               
               Conread position:353-530
               
               
               Cow position:chr18:19364072-19363895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):25, 54

               
               
               Conread position:353-530
               
               
               Cow position:chr18:51298619-51298438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):21, 68

               
               
               Conread position:356-525
               
               
               Cow position:chr18:48458806-48458636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):94, 60

               
               
               Conread position:360-542
               
               
               Cow position:chr18:32909175-32908994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):73, 48

               
               
               Conread position:362-538
               
               
               Cow position:chr18:42061206-42061024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):16, 49

               
               
               Conread position:365-526
               
               
               Cow position:chr18:16726771-16726610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):85, 48

               
               
               Conread position:371-537
               
               
               Cow position:chr18:32773995-32773827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):72, 45

               
               
               Conread position:372-513
               
               
               Cow position:chr18:248699-248843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):78, 44

               
               
               Conread position:372-525
               
               
               Cow position:chr18:24855728-24855882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):73, 44

               
               
               Conread position:372-525
               
               
               Cow position:chr18:38126334-38126487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):65, 34

               
               
               Conread position:372-537
               
               
               Cow position:chr18:43113833-43113994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):80, 34

               
               
               Conread position:373-537
               
               
               Cow position:chr18:44400561-44400399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):77, 35

               
               
               Conread position:374-542
               
               
               Cow position:chr18:56302008-56301836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):60, 51

               
               
               Conread position:379-527
               
               
               Cow position:chr18:16134205-16134354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):71, 23

               
               
               Conread position:380-529
               
               
               Cow position:chr18:23425026-23424878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):70, 37

               
               
               Conread position:387-542
               
               
               Cow position:chr18:25002789-25002945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):61, 29

               
               
               Conread position:388-533
               
               
               Cow position:chr18:1495403-1495257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):61, 28

               
               
               Conread position:417-526
               
               
               Cow position:chr18:213464-213577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:313-542
               
               
               Cow position:chr19:952889-952660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):66, 30

               
               
               Conread position:314-530
               
               
               Cow position:chr19:30935578-30935793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):16, 93

               
               
               Conread position:318-521
               
               
               Cow position:chr19:31126993-31126784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):60, 25

               
               
               Conread position:319-511
               
               
               Cow position:chr19:38025893-38025689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):29, 107

               
               
               Conread position:320-529
               
               
               Cow position:chr19:28842165-28842381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):58, 103

               
               
               Conread position:323-542
               
               
               Cow position:chr19:17020471-17020246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):31, 9

               
               
               Conread position:324-521
               
               
               Cow position:chr19:5648481-5648678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):129, 84

               
               
               Conread position:324-542
               
               
               Cow position:chr19:40450212-40449984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):23, 167

               
               
               Conread position:325-522
               
               
               Cow position:chr19:32989240-32989426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):29, 92

               
               
               Conread position:326-511
               
               
               Cow position:chr19:54550595-54550780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):10, 25

               
               
               Conread position:326-526
               
               
               Cow position:chr19:33511760-33511950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):18, 58

               
               
               Conread position:326-530
               
               
               Cow position:chr19:31380818-31381024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):53, 84

               
               
               Conread position:326-542
               
               
               Cow position:chr19:10970901-10971132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:327-494
               
               
               Cow position:chr19:54817344-54817521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):11, 96

               
               
               Conread position:327-500
               
               
               Cow position:chr19:11759046-11759222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):41, 31

               
               
               Conread position:329-518
               
               
               Cow position:chr19:47771801-47771621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:332-526
               
               
               Cow position:chr19:38871251-38871050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):46, 89

               
               
               Conread position:332-529
               
               
               Cow position:chr19:6880706-6880899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):118, 53

               
               
               Conread position:333-530
               
               
               Cow position:chr19:26003432-26003638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):45, 94

               
               
               Conread position:334-497
               
               
               Cow position:chr19:56008549-56008713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):22, 83

               
               
               Conread position:334-525
               
               
               Cow position:chr19:31614290-31614093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):17, 101

               
               
               Conread position:335-511
               
               
               Cow position:chr19:39222934-39223106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):15, 79

               
               
               Conread position:335-526
               
               
               Cow position:chr19:9387814-9387617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 86

               
               
               Conread position:335-542
               
               
               Cow position:chr19:40026755-40026964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):42, 14

               
               
               Conread position:336-518
               
               
               Cow position:chr19:11876524-11876710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):39, 75

               
               
               Conread position:336-542
               
               
               Cow position:chr19:56063245-56063464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:339-475
               
               
               Cow position:chr19:30313328-30313192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):111, 31

               
               
               Conread position:339-482
               
               
               Cow position:chr19:35083971-35084116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):111, 69

               
               
               Conread position:339-530
               
               
               Cow position:chr19:2280471-2280662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):39, 80

               
               
               Conread position:340-526
               
               
               Cow position:chr19:19246945-19246756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):14, 69

               
               
               Conread position:340-526
               
               
               Cow position:chr19:39250431-39250249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):110, 53

               
               
               Conread position:340-527
               
               
               Cow position:chr19:46713817-46713617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:341-530
               
               
               Cow position:chr19:48479149-48478959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):9, 60

               
               
               Conread position:342-524
               
               
               Cow position:chr19:35345101-35344910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):36, 71

               
               
               Conread position:343-518
               
               
               Cow position:chr19:46498100-46497927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):107, 56

               
               
               Conread position:343-518
               
               
               Cow position:chr19:47783591-47783776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):23, 74

               
               
               Conread position:343-537
               
               
               Cow position:chr19:36976740-36976940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):29, 67

               
               
               Conread position:343-542
               
               
               Cow position:chr19:12040790-12040586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):35, 78

               
               
               Conread position:344-524
               
               
               Cow position:chr19:25271248-25271431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):37, 66

               
               
               Conread position:349-530
               
               
               Cow position:chr19:4824815-4825004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):5, 73

               
               
               Conread position:349-542
               
               
               Cow position:chr19:36461362-36461563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:352-524
               
               
               Cow position:chr19:9092649-9092826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):25, 60

               
               
               Conread position:353-507
               
               
               Cow position:chr19:1153368-1153206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):23, 68

               
               
               Conread position:353-532
               
               
               Cow position:chr19:20291931-20292117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):19, 59

               
               
               Conread position:357-504
               
               
               Cow position:chr19:46306188-46306334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):93, 29

               
               
               Conread position:361-505
               
               
               Cow position:chr19:42896618-42896462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:364-527
               
               
               Cow position:chr19:6735080-6735247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):86, 52

               
               
               Conread position:364-537
               
               
               Cow position:chr19:3080613-3080432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):32, 57

               
               
               Conread position:372-511
               
               
               Cow position:chr19:5986373-5986231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):78, 44

               
               
               Conread position:372-526
               
               
               Cow position:chr19:1713003-1713159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):77, 36

               
               
               Conread position:372-526
               
               
               Cow position:chr19:7030055-7029901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):78, 23

               
               
               Conread position:372-528
               
               
               Cow position:chr19:22932411-22932569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):78, 41

               
               
               Conread position:372-542
               
               
               Cow position:chr19:15936970-15936803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):81, 41

               
               
               Conread position:374-542
               
               
               Cow position:chr19:31984513-31984683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):75, 38

               
               
               Conread position:378-526
               
               
               Cow position:chr19:3084078-3084224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):54, 38

               
               
               Conread position:379-530
               
               
               Cow position:chr19:35064060-35064216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):52, 37

               
               
               Conread position:382-530
               
               
               Cow position:chr19:7838920-7839063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):67, 23

               
               
               Conread position:311-513
               
               
               Cow position:chr2:42925499-42925297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):25, 12

               
               
               Conread position:312-525
               
               
               Cow position:chr2:82310988-82311203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):55, 84

               
               
               Conread position:320-513
               
               
               Cow position:chr2:51041407-51041609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):42, 102

               
               
               Conread position:322-542
               
               
               Cow position:chr2:31114037-31113821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):132, 56

               
               
               Conread position:323-526
               
               
               Cow position:chr2:38117802-38118004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):56, 76

               
               
               Conread position:323-540
               
               
               Cow position:chr2:70664220-70663996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):53, 20

               
               
               Conread position:324-493
               
               
               Cow position:chr2:67758952-67759124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):18, 34

               
               
               Conread position:325-530
               
               
               Cow position:chr2:34256108-34256306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:325-536
               
               
               Cow position:chr2:15769302-15769519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):62, 13

               
               
               Conread position:326-525
               
               
               Cow position:chr2:30640405-30640186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):46, 17

               
               
               Conread position:326-526
               
               
               Cow position:chr2:4010298-4010103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):50, 94

               
               
               Conread position:326-527
               
               
               Cow position:chr2:33596461-33596665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):25, 91

               
               
               Conread position:326-537
               
               
               Cow position:chr2:46783712-46783498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):29, 91

               
               
               Conread position:327-509
               
               
               Cow position:chr2:1651596-1651414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):51, 92

               
               
               Conread position:327-512
               
               
               Cow position:chr2:81348677-81348870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):5, 84

               
               
               Conread position:327-537
               
               
               Cow position:chr2:73999923-73999707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):23, 87

               
               
               Conread position:327-542
               
               
               Cow position:chr2:13604668-13604446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):50, 16

               
               
               Conread position:328-527
               
               
               Cow position:chr2:2937754-2937559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):50, 31

               
               
               Conread position:332-475
               
               
               Cow position:chr2:45902066-45901922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):118, 76

               
               
               Conread position:332-508
               
               
               Cow position:chr2:29032898-29032718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):36, 85

               
               
               Conread position:332-526
               
               
               Cow position:chr2:39346775-39346585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):102, 76

               
               
               Conread position:332-526
               
               
               Cow position:chr2:56269423-56269621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):68, 86

               
               
               Conread position:332-541
               
               
               Cow position:chr2:41057331-41057545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):44, 86

               
               
               Conread position:333-530
               
               
               Cow position:chr2:77981961-77982154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):117, 43

               
               
               Conread position:334-526
               
               
               Cow position:chr2:33659513-33659709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):18, 25

               
               
               Conread position:334-530
               
               
               Cow position:chr2:7720721-7720919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 87

               
               
               Conread position:334-541
               
               
               Cow position:chr2:16018040-16018254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:334-542
               
               
               Cow position:chr2:31155902-31155689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):25, 78

               
               
               Conread position:335-527
               
               
               Cow position:chr2:72584113-72583917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):19, 87

               
               
               Conread position:335-540
               
               
               Cow position:chr2:62384492-62384704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):39, 8

               
               
               Conread position:335-542
               
               
               Cow position:chr2:36295019-36294805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):47, 162

               
               
               Conread position:335-542
               
               
               Cow position:chr2:41765671-41765469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):115, 40

               
               
               Conread position:335-542
               
               
               Cow position:chr2:54253571-54253357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):34, 77

               
               
               Conread position:336-526
               
               
               Cow position:chr2:13466218-13466030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):16, 42

               
               
               Conread position:336-537
               
               
               Cow position:chr2:15162929-15162727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):18, 43

               
               
               Conread position:336-537
               
               
               Cow position:chr2:51769798-51769590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):41, 73

               
               
               Conread position:336-542
               
               
               Cow position:chr2:38205571-38205781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):42, 81

               
               
               Conread position:337-524
               
               
               Cow position:chr2:4071112-4070918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):9, 85

               
               
               Conread position:337-525
               
               
               Cow position:chr2:48748541-48748731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):113, 71

               
               
               Conread position:337-527
               
               
               Cow position:chr2:18395347-18395160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):42, 76

               
               
               Conread position:338-537
               
               
               Cow position:chr2:5129468-5129661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):40, 71

               
               
               Conread position:339-508
               
               
               Cow position:chr2:1435801-1435631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):18, 69

               
               
               Conread position:339-517
               
               
               Cow position:chr2:77033867-77033685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):33, 11

               
               
               Conread position:339-529
               
               
               Cow position:chr2:17427358-17427161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):39, 84

               
               
               Conread position:339-532
               
               
               Cow position:chr2:8245706-8245504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):38, 187

               
               
               Conread position:340-527
               
               
               Cow position:chr2:41314074-41313887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):113, 37

               
               
               Conread position:340-529
               
               
               Cow position:chr2:36866600-36866786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):38, 72

               
               
               Conread position:340-531
               
               
               Cow position:chr2:56796888-56797080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):105, 37

               
               
               Conread position:343-490
               
               
               Cow position:chr2:32836372-32836221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):65, 88

               
               
               Conread position:343-527
               
               
               Cow position:chr2:7498759-7498571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):14, 79

               
               
               Conread position:343-533
               
               
               Cow position:chr2:20915813-20916001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):107, 52

               
               
               Conread position:343-540
               
               
               Cow position:chr2:52171433-52171235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):34, 79

               
               
               Conread position:343-542
               
               
               Cow position:chr2:14734282-14734082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):109, 8

               
               
               Conread position:344-530
               
               
               Cow position:chr2:32453349-32453541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):34, 67

               
               
               Conread position:344-532
               
               
               Cow position:chr2:72902106-72902299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):29, 76

               
               
               Conread position:344-537
               
               
               Cow position:chr2:20250889-20250693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):34, 77

               
               
               Conread position:344-542
               
               
               Cow position:chr2:50591964-50591755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):48, 54

               
               
               Conread position:345-523
               
               
               Cow position:chr2:78852593-78852773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):33, 55

               
               
               Conread position:346-530
               
               
               Cow position:chr2:39855963-39855781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):31, 54

               
               
               Conread position:347-537
               
               
               Cow position:chr2:56752723-56752920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:349-528
               
               
               Cow position:chr2:25084863-25084679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):29, 70

               
               
               Conread position:349-530
               
               
               Cow position:chr2:31457665-31457478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):83, 68

               
               
               Conread position:349-542
               
               
               Cow position:chr2:10356502-10356695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):38, 9

               
               
               Conread position:352-527
               
               
               Cow position:chr2:17342052-17341879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):98, 20

               
               
               Conread position:352-527
               
               
               Cow position:chr2:68981835-68982018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):26, 69

               
               
               Conread position:352-542
               
               
               Cow position:chr2:21955306-21955115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):24, 67

               
               
               Conread position:353-542
               
               
               Cow position:chr2:51028127-51027936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):25, 68

               
               
               Conread position:355-537
               
               
               Cow position:chr2:73027613-73027425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):22, 66

               
               
               Conread position:356-524
               
               
               Cow position:chr2:8601516-8601683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 44

               
               
               Conread position:357-527
               
               
               Cow position:chr2:24106560-24106388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):41, 21

               
               
               Conread position:360-524
               
               
               Cow position:chr2:18061464-18061633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):18, 40

               
               
               Conread position:362-528
               
               
               Cow position:chr2:41461531-41461360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):11, 57

               
               
               Conread position:368-537
               
               
               Cow position:chr2:14749745-14749576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):85, 50

               
               
               Conread position:372-510
               
               
               Cow position:chr2:64226626-64226487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):76, 42

               
               
               Conread position:372-511
               
               
               Cow position:chr2:56884569-56884429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):65, 40

               
               
               Conread position:372-526
               
               
               Cow position:chr2:793795-793640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):78, 44

               
               
               Conread position:372-530
               
               
               Cow position:chr2:4383748-4383908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):78, 40

               
               
               Conread position:372-530
               
               
               Cow position:chr2:36998284-36998122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):78, 40

               
               
               Conread position:372-537
               
               
               Cow position:chr2:26042090-26042258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):78, 42

               
               
               Conread position:372-542
               
               
               Cow position:chr2:22859483-22859662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):71, 44

               
               
               Conread position:373-527
               
               
               Cow position:chr2:82054696-82054851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):23, 36

               
               
               Conread position:374-537
               
               
               Cow position:chr2:425961-425797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):76, 32

               
               
               Conread position:376-530
               
               
               Cow position:chr2:70464577-70464425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):74, 28

               
               
               Conread position:392-527
               
               
               Cow position:chr2:70579574-70579711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):58, 21

               
               
               Conread position:393-542
               
               
               Cow position:chr2:70306271-70306120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):57, 23

               
               
               Conread position:421-525
               
               
               Cow position:chr2:39802208-39802316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:93
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:314-530
               
               
               Cow position:chr20:33178276-33178485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):138, 10

               
               
               Conread position:326-461
               
               
               Cow position:chr20:32975438-32975302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):117, 25

               
               
               Conread position:327-475
               
               
               Cow position:chr20:24868775-24868928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):25, 84

               
               
               Conread position:327-521
               
               
               Cow position:chr20:32972786-32972591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):44, 22

               
               
               Conread position:327-542
               
               
               Cow position:chr20:37029063-37028840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):60, 77

               
               
               Conread position:328-542
               
               
               Cow position:chr20:23163667-23163880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):42, 20

               
               
               Conread position:329-490
               
               
               Cow position:chr20:3105256-3105087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):16, 93

               
               
               Conread position:332-488
               
               
               Cow position:chr20:29520998-29521156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):46, 89

               
               
               Conread position:332-501
               
               
               Cow position:chr20:8444912-8445088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:332-518
               
               
               Cow position:chr20:24234381-24234202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):12, 85

               
               
               Conread position:332-527
               
               
               Cow position:chr20:2456262-2456067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):49, 87

               
               
               Conread position:333-542
               
               
               Cow position:chr20:17363423-17363636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):40, 88

               
               
               Conread position:333-542
               
               
               Cow position:chr20:41109862-41110074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):39, 77

               
               
               Conread position:334-521
               
               
               Cow position:chr20:15073600-15073795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):16, 159

               
               
               Conread position:334-530
               
               
               Cow position:chr20:4157650-4157453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):65, 75

               
               
               Conread position:335-503
               
               
               Cow position:chr20:6104918-6105095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):7, 88

               
               
               Conread position:336-530
               
               
               Cow position:chr20:25823509-25823310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):42, 82

               
               
               Conread position:337-541
               
               
               Cow position:chr20:39220493-39220696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):116, 41

               
               
               Conread position:338-515
               
               
               Cow position:chr20:21518874-21518696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):40, 73

               
               
               Conread position:339-520
               
               
               Cow position:chr20:21236877-21236699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):108, 54

               
               
               Conread position:339-530
               
               
               Cow position:chr20:1205707-1205897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):22, 65

               
               
               Conread position:340-530
               
               
               Cow position:chr20:14679845-14679654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):39, 77

               
               
               Conread position:340-530
               
               
               Cow position:chr20:20359555-20359751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):37, 79

               
               
               Conread position:341-524
               
               
               Cow position:chr20:25274067-25274251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):23, 78

               
               
               Conread position:341-525
               
               
               Cow position:chr20:24850029-24849843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):102, 67

               
               
               Conread position:343-516
               
               
               Cow position:chr20:13465731-13465555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):36, 74

               
               
               Conread position:343-524
               
               
               Cow position:chr20:37450772-37450587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):62, 22

               
               
               Conread position:343-527
               
               
               Cow position:chr20:25686122-25686313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):35, 78

               
               
               Conread position:343-530
               
               
               Cow position:chr20:7101011-7100814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):35, 70

               
               
               Conread position:343-532
               
               
               Cow position:chr20:8262139-8261945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):35, 72

               
               
               Conread position:343-537
               
               
               Cow position:chr20:4933845-4934044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):29, 74

               
               
               Conread position:343-540
               
               
               Cow position:chr20:4334294-4334509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:343-542
               
               
               Cow position:chr20:9706693-9706900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):35, 70

               
               
               Conread position:343-542
               
               
               Cow position:chr20:10837990-10838192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):57, 74

               
               
               Conread position:344-518
               
               
               Cow position:chr20:5763070-5763250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):32, 47

               
               
               Conread position:344-527
               
               
               Cow position:chr20:17670403-17670218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:153
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):18, 69

               
               
               Conread position:345-541
               
               
               Cow position:chr20:1576316-1576115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):98, 37

               
               
               Conread position:346-515
               
               
               Cow position:chr20:6053252-6053422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):106, 31

               
               
               Conread position:346-518
               
               
               Cow position:chr20:38858213-38858376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):29, 41

               
               
               Conread position:346-530
               
               
               Cow position:chr20:25147000-25146814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):106, 70

               
               
               Conread position:348-496
               
               
               Cow position:chr20:14513248-14513097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):95, 57

               
               
               Conread position:353-460
               
               
               Cow position:chr20:14920951-14920846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:353-485
               
               
               Cow position:chr20:6571824-6571691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):93, 55

               
               
               Conread position:353-504
               
               
               Cow position:chr20:13617445-13617283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:353-524
               
               
               Cow position:chr20:6903528-6903351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):22, 36

               
               
               Conread position:354-528
               
               
               Cow position:chr20:18530649-18530469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):28, 66

               
               
               Conread position:355-524
               
               
               Cow position:chr20:16979962-16979786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):19, 57

               
               
               Conread position:356-516
               
               
               Cow position:chr20:27001595-27001436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):10, 51

               
               
               Conread position:356-521
               
               
               Cow position:chr20:10759264-10759432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):20, 31

               
               
               Conread position:372-504
               
               
               Cow position:chr20:39418696-39418826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):83, 44

               
               
               Conread position:372-521
               
               
               Cow position:chr20:15241572-15241724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):77, 42

               
               
               Conread position:374-527
               
               
               Cow position:chr20:34108297-34108139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:376-525
               
               
               Cow position:chr20:14471385-14471535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):71, 10

               
               
               Conread position:431-542
               
               
               Cow position:chr20:5576910-5576795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:300-537
               
               
               Cow position:chr21:8671676-8671442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):50, 22

               
               
               Conread position:306-530
               
               
               Cow position:chr21:31662750-31662519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:325-542
               
               
               Cow position:chr21:18135605-18135832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):45, 101

               
               
               Conread position:327-537
               
               
               Cow position:chr21:7483091-7483304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):16, 43

               
               
               Conread position:327-542
               
               
               Cow position:chr21:44754526-44754740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):23, 85

               
               
               Conread position:329-495
               
               
               Cow position:chr21:12972741-12972916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):52, 14

               
               
               Conread position:329-530
               
               
               Cow position:chr21:45356095-45355885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):25, 93

               
               
               Conread position:331-448
               
               
               Cow position:chr21:36469911-36469796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):45, 18

               
               
               Conread position:332-521
               
               
               Cow position:chr21:25286771-25286578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):54, 89

               
               
               Conread position:332-540
               
               
               Cow position:chr21:8207033-8206814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:332-542
               
               
               Cow position:chr21:38901041-38900814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):20, 101

               
               
               Conread position:334-530
               
               
               Cow position:chr21:47715290-47715494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):44, 77

               
               
               Conread position:335-518
               
               
               Cow position:chr21:23800878-23801064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):10, 74

               
               
               Conread position:335-527
               
               
               Cow position:chr21:33947001-33947194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):46, 84

               
               
               Conread position:336-498
               
               
               Cow position:chr21:49661588-49661751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):42, 7

               
               
               Conread position:337-527
               
               
               Cow position:chr21:37235635-37235440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):17, 82

               
               
               Conread position:337-542
               
               
               Cow position:chr21:13395851-13395631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):41, 6

               
               
               Conread position:339-516
               
               
               Cow position:chr21:2413299-2413119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):111, 69

               
               
               Conread position:339-517
               
               
               Cow position:chr21:17428747-17428561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):15, 75

               
               
               Conread position:339-518
               
               
               Cow position:chr21:17806888-17807069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):8, 81

               
               
               Conread position:339-521
               
               
               Cow position:chr21:9939939-9940127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):39, 82

               
               
               Conread position:339-526
               
               
               Cow position:chr21:15741833-15742033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):11, 83

               
               
               Conread position:339-532
               
               
               Cow position:chr21:4099116-4098923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):40, 67

               
               
               Conread position:340-530
               
               
               Cow position:chr21:25800644-25800452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):110, 68

               
               
               Conread position:340-541
               
               
               Cow position:chr21:31662248-31662045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):110, 76

               
               
               Conread position:341-532
               
               
               Cow position:chr21:21181425-21181230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):33, 80

               
               
               Conread position:342-526
               
               
               Cow position:chr21:24674963-24674776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):34, 66

               
               
               Conread position:343-484
               
               
               Cow position:chr21:6012667-6012815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):29, 70

               
               
               Conread position:343-507
               
               
               Cow position:chr21:41197806-41197970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):31, 70

               
               
               Conread position:343-509
               
               
               Cow position:chr21:26147324-26147151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):35, 70

               
               
               Conread position:343-524
               
               
               Cow position:chr21:6388235-6388057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):98, 56

               
               
               Conread position:343-542
               
               
               Cow position:chr21:13755027-13754826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):27, 74

               
               
               Conread position:343-542
               
               
               Cow position:chr21:46241994-46242194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):35, 78

               
               
               Conread position:344-508
               
               
               Cow position:chr21:22398393-22398236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):99, 55

               
               
               Conread position:344-521
               
               
               Cow position:chr21:23397607-23397785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):34, 60

               
               
               Conread position:344-528
               
               
               Cow position:chr21:12301266-12301457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):33, 68

               
               
               Conread position:345-496
               
               
               Cow position:chr21:44220610-44220449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):9, 69

               
               
               Conread position:345-517
               
               
               Cow position:chr21:46607349-46607522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):31, 76

               
               
               Conread position:345-528
               
               
               Cow position:chr21:4276359-4276548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):43, 76

               
               
               Conread position:345-542
               
               
               Cow position:chr21:39509145-39509346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):33, 76

               
               
               Conread position:347-528
               
               
               Cow position:chr21:36371723-36371542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):31, 69

               
               
               Conread position:347-530
               
               
               Cow position:chr21:15239519-15239335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):31, 62

               
               
               Conread position:348-518
               
               
               Cow position:chr21:23397424-23397598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):24, 60

               
               
               Conread position:351-526
               
               
               Cow position:chr21:23768102-23767927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):96, 13

               
               
               Conread position:351-526
               
               
               Cow position:chr21:23786263-23786088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):96, 13

               
               
               Conread position:353-527
               
               
               Cow position:chr21:13418003-13418175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):97, 55

               
               
               Conread position:353-530
               
               
               Cow position:chr21:34740081-34739896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):25, 68

               
               
               Conread position:355-530
               
               
               Cow position:chr21:34564985-34565157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):95, 53

               
               
               Conread position:355-542
               
               
               Cow position:chr21:31576722-31576537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):18, 62

               
               
               Conread position:356-530
               
               
               Cow position:chr21:4723714-4723533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):22, 55

               
               
               Conread position:356-542
               
               
               Cow position:chr21:12087829-12087629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):22, 65

               
               
               Conread position:357-530
               
               
               Cow position:chr21:34160175-34160002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):93, 59

               
               
               Conread position:367-503
               
               
               Cow position:chr21:47823053-47823189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):83, 32

               
               
               Conread position:367-542
               
               
               Cow position:chr21:18941617-18941794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):76, 46

               
               
               Conread position:372-512
               
               
               Cow position:chr21:32574933-32574800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:372-517
               
               
               Cow position:chr21:22353025-22353172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):71, 36

               
               
               Conread position:372-521
               
               
               Cow position:chr21:26753703-26753552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):78, 24

               
               
               Conread position:372-524
               
               
               Cow position:chr21:35997384-35997235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):78, 44

               
               
               Conread position:372-530
               
               
               Cow position:chr21:9353660-9353499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):78, 44

               
               
               Conread position:381-527
               
               
               Cow position:chr21:24698683-24698536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):69, 9

               
               
               Conread position:385-506
               
               
               Cow position:chr21:16836750-16836876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:385-506
               
               
               Cow position:chr21:44789155-44789278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):57, 21

               
               
               Conread position:309-526
               
               
               Cow position:chr22:29004213-29004429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):47, 103

               
               
               Conread position:315-524
               
               
               Cow position:chr22:29868407-29868614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):63, 24

               
               
               Conread position:318-515
               
               
               Cow position:chr22:18339741-18339940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):128, 32

               
               
               Conread position:321-526
               
               
               Cow position:chr22:5622521-5622726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):28, 80

               
               
               Conread position:324-542
               
               
               Cow position:chr22:19047618-19047842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):26, 36

               
               
               Conread position:325-524
               
               
               Cow position:chr22:32053569-32053369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):53, 23

               
               
               Conread position:325-530
               
               
               Cow position:chr22:15914534-15914730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):26, 64

               
               
               Conread position:325-537
               
               
               Cow position:chr22:44835853-44835627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):20, 95

               
               
               Conread position:325-542
               
               
               Cow position:chr22:12749697-12749928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:326-540
               
               
               Cow position:chr22:5384850-5384630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):28, 77

               
               
               Conread position:327-517
               
               
               Cow position:chr22:26057572-26057379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):80, 25

               
               
               Conread position:327-518
               
               
               Cow position:chr22:45291515-45291322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):51, 29

               
               
               Conread position:329-510
               
               
               Cow position:chr22:19208155-19207973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):123, 77

               
               
               Conread position:332-502
               
               
               Cow position:chr22:29256793-29256615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):39, 90

               
               
               Conread position:332-530
               
               
               Cow position:chr22:39983006-39983210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):45, 86

               
               
               Conread position:332-542
               
               
               Cow position:chr22:34675710-34675497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):46, 89

               
               
               Conread position:333-476
               
               
               Cow position:chr22:33763295-33763443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):41, 75

               
               
               Conread position:333-504
               
               
               Cow position:chr22:37554325-37554502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):28, 90

               
               
               Conread position:333-518
               
               
               Cow position:chr22:4563933-4564113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):45, 75

               
               
               Conread position:333-521
               
               
               Cow position:chr22:139123-139306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):117, 65

               
               
               Conread position:333-537
               
               
               Cow position:chr22:15424325-15424114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:334-524
               
               
               Cow position:chr22:10553496-10553694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:334-530
               
               
               Cow position:chr22:41245438-41245233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):109, 82

               
               
               Conread position:335-502
               
               
               Cow position:chr22:27469093-27468919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):37, 78

               
               
               Conread position:335-516
               
               
               Cow position:chr22:1596-1422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):114, 8

               
               
               Conread position:335-526
               
               
               Cow position:chr22:23037557-23037757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):12, 170

               
               
               Conread position:335-530
               
               
               Cow position:chr22:11778425-11778623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):30, 8

               
               
               Conread position:336-487
               
               
               Cow position:chr22:16897805-16897959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):106, 80

               
               
               Conread position:336-500
               
               
               Cow position:chr22:43873245-43873072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):18, 78

               
               
               Conread position:336-508
               
               
               Cow position:chr22:26183977-26184154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):40, 84

               
               
               Conread position:336-521
               
               
               Cow position:chr22:11877856-11878050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):18, 83

               
               
               Conread position:337-525
               
               
               Cow position:chr22:28685511-28685317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):35, 76

               
               
               Conread position:337-526
               
               
               Cow position:chr22:19223933-19223743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):96, 6

               
               
               Conread position:337-529
               
               
               Cow position:chr22:26941974-26941780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):12, 73

               
               
               Conread position:337-542
               
               
               Cow position:chr22:42612646-42612432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):17, 86

               
               
               Conread position:339-522
               
               
               Cow position:chr22:16234339-16234147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):15, 83

               
               
               Conread position:339-523
               
               
               Cow position:chr22:32690257-32690442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):38, 78

               
               
               Conread position:339-526
               
               
               Cow position:chr22:31192394-31192583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):40, 74

               
               
               Conread position:339-530
               
               
               Cow position:chr22:9466792-9466599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):39, 78

               
               
               Conread position:339-542
               
               
               Cow position:chr22:876464-876249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:339-542
               
               
               Cow position:chr22:13188062-13187855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):39, 78

               
               
               Conread position:340-509
               
               
               Cow position:chr22:44468987-44468810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):27, 73

               
               
               Conread position:340-527
               
               
               Cow position:chr22:28672335-28672133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):38, 21

               
               
               Conread position:341-513
               
               
               Cow position:chr22:31512627-31512799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):109, 63

               
               
               Conread position:341-542
               
               
               Cow position:chr22:17184504-17184713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):31, 80

               
               
               Conread position:343-494
               
               
               Cow position:chr22:19069264-19069110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):31, 75

               
               
               Conread position:343-515
               
               
               Cow position:chr22:27508839-27508658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):44, 33

               
               
               Conread position:343-521
               
               
               Cow position:chr22:26760887-26760710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):106, 65

               
               
               Conread position:343-524
               
               
               Cow position:chr22:7287691-7287501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):28, 70

               
               
               Conread position:343-526
               
               
               Cow position:chr22:41389286-41389097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):29, 74

               
               
               Conread position:343-527
               
               
               Cow position:chr22:22999771-22999582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):29, 78

               
               
               Conread position:343-529
               
               
               Cow position:chr22:41927181-41927364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):106, 65

               
               
               Conread position:344-504
               
               
               Cow position:chr22:31496821-31496981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):99, 51

               
               
               Conread position:344-537
               
               
               Cow position:chr22:19262959-19263154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):106, 24

               
               
               Conread position:344-542
               
               
               Cow position:chr22:5927786-5927985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):35, 74

               
               
               Conread position:344-542
               
               
               Cow position:chr22:7301663-7301862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):32, 62

               
               
               Conread position:344-542
               
               
               Cow position:chr22:44923879-44924084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):34, 66

               
               
               Conread position:345-498
               
               
               Cow position:chr22:8397649-8397811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):33, 77

               
               
               Conread position:345-521
               
               
               Cow position:chr22:33592256-33592437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):33, 77

               
               
               Conread position:345-524
               
               
               Cow position:chr22:4036752-4036573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):105, 63

               
               
               Conread position:346-531
               
               
               Cow position:chr22:25715181-25714989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):30, 64

               
               
               Conread position:349-530
               
               
               Cow position:chr22:43262621-43262443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):103, 28

               
               
               Conread position:352-498
               
               
               Cow position:chr22:17074539-17074387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):27, 9

               
               
               Conread position:353-522
               
               
               Cow position:chr22:27224296-27224120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:353-524
               
               
               Cow position:chr22:4753587-4753764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):18, 68

               
               
               Conread position:353-542
               
               
               Cow position:chr22:22210074-22210269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):97, 29

               
               
               Conread position:355-542
               
               
               Cow position:chr22:34726828-34726640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):59, 38

               
               
               Conread position:356-537
               
               
               Cow position:chr22:33386344-33386526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):20, 64

               
               
               Conread position:356-542
               
               
               Cow position:chr22:15358412-15358219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):22, 55

               
               
               Conread position:357-521
               
               
               Cow position:chr22:1081954-1081782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):20, 65

               
               
               Conread position:360-494
               
               
               Cow position:chr22:26764190-26764053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):18, 57

               
               
               Conread position:360-529
               
               
               Cow position:chr22:42945891-42946062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):34, 22

               
               
               Conread position:367-521
               
               
               Cow position:chr22:4651330-4651171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):22, 51

               
               
               Conread position:367-530
               
               
               Cow position:chr22:30429770-30429604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):11, 50

               
               
               Conread position:367-542
               
               
               Cow position:chr22:43352037-43352216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):75, 47

               
               
               Conread position:370-537
               
               
               Cow position:chr22:39293593-39293765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):23, 47

               
               
               Conread position:371-537
               
               
               Cow position:chr22:2913423-2913258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):78, 37

               
               
               Conread position:372-530
               
               
               Cow position:chr22:22997622-22997462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):78, 47

               
               
               Conread position:372-542
               
               
               Cow position:chr22:1998428-1998257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):78, 45

               
               
               Conread position:373-515
               
               
               Cow position:chr22:23270202-23270346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):77, 43

               
               
               Conread position:374-513
               
               
               Cow position:chr22:5337455-5337597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):78, 33

               
               
               Conread position:374-542
               
               
               Cow position:chr22:14509329-14509504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:383-542
               
               
               Cow position:chr22:15398443-15398603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):70, 23

               
               
               Conread position:386-542
               
               
               Cow position:chr22:7102964-7102807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):64, 31

               
               
               Conread position:409-526
               
               
               Cow position:chr22:23016848-23016968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:305-481
               
               
               Cow position:chr23:30735927-30736107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):67, 108

               
               
               Conread position:309-521
               
               
               Cow position:chr23:15872474-15872694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):14, 55

               
               
               Conread position:313-527
               
               
               Cow position:chr23:20171789-20171573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):137, 47

               
               
               Conread position:322-542
               
               
               Cow position:chr23:17092295-17092517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):54, 43

               
               
               Conread position:324-527
               
               
               Cow position:chr23:22272271-22272485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):28, 99

               
               
               Conread position:324-533
               
               
               Cow position:chr23:347545-347757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):48, 98

               
               
               Conread position:325-525
               
               
               Cow position:chr23:36082787-36082580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):53, 17

               
               
               Conread position:325-537
               
               
               Cow position:chr23:1717348-1717565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):46, 25

               
               
               Conread position:325-539
               
               
               Cow position:chr23:5389904-5389683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):27, 98

               
               
               Conread position:326-537
               
               
               Cow position:chr23:37223870-37224082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):9, 88

               
               
               Conread position:326-542
               
               
               Cow position:chr23:19636060-19636279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):50, 91

               
               
               Conread position:331-530
               
               
               Cow position:chr23:35362595-35362786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):121, 18

               
               
               Conread position:332-467
               
               
               Cow position:chr23:16072157-16072291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):117, 18

               
               
               Conread position:332-496
               
               
               Cow position:chr23:33928005-33927832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):13, 91

               
               
               Conread position:332-518
               
               
               Cow position:chr23:26319589-26319400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):44, 121

               
               
               Conread position:332-541
               
               
               Cow position:chr23:40862531-40862326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):95, 37

               
               
               Conread position:332-542
               
               
               Cow position:chr23:21866935-21866721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):47, 18

               
               
               Conread position:332-542
               
               
               Cow position:chr23:23409926-23409712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):75, 19

               
               
               Conread position:333-524
               
               
               Cow position:chr23:24411203-24411003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):19, 90

               
               
               Conread position:336-528
               
               
               Cow position:chr23:17000889-17000698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):101, 36

               
               
               Conread position:337-542
               
               
               Cow position:chr23:26861623-26861421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):39, 81

               
               
               Conread position:338-530
               
               
               Cow position:chr23:40891553-40891353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):38, 83

               
               
               Conread position:338-542
               
               
               Cow position:chr23:6035618-6035415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):66, 37

               
               
               Conread position:339-527
               
               
               Cow position:chr23:7611448-7611262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):39, 76

               
               
               Conread position:339-527
               
               
               Cow position:chr23:30256055-30255855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:339-542
               
               
               Cow position:chr23:7696749-7696537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:340-530
               
               
               Cow position:chr23:16793768-16793577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 68

               
               
               Conread position:340-537
               
               
               Cow position:chr23:6683930-6683732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):99, 19

               
               
               Conread position:341-526
               
               
               Cow position:chr23:20585512-20585702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):9, 74

               
               
               Conread position:342-542
               
               
               Cow position:chr23:20388459-20388672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 60

               
               
               Conread position:343-526
               
               
               Cow position:chr23:8929955-8930141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):15, 8

               
               
               Conread position:343-527
               
               
               Cow position:chr23:21847940-21847748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):28, 70

               
               
               Conread position:343-527
               
               
               Cow position:chr23:38941806-38941616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):34, 78

               
               
               Conread position:343-530
               
               
               Cow position:chr23:35155559-35155366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):29, 70

               
               
               Conread position:343-537
               
               
               Cow position:chr23:14840332-14840526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):107, 65

               
               
               Conread position:343-542
               
               
               Cow position:chr23:26051224-26051017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):34, 78

               
               
               Conread position:345-513
               
               
               Cow position:chr23:39117831-39117993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):104, 71

               
               
               Conread position:345-526
               
               
               Cow position:chr23:26217739-26217560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):9, 64

               
               
               Conread position:345-526
               
               
               Cow position:chr23:30308086-30307903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):9, 45

               
               
               Conread position:347-510
               
               
               Cow position:chr23:22826253-22826430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:353-526
               
               
               Cow position:chr23:11750959-11751139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):24, 68

               
               
               Conread position:353-542
               
               
               Cow position:chr23:29272285-29272095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):87, 64

               
               
               Conread position:361-542
               
               
               Cow position:chr23:11434099-11434278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):92, 34

               
               
               Conread position:372-516
               
               
               Cow position:chr23:28721087-28721230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):78, 44

               
               
               Conread position:372-541
               
               
               Cow position:chr23:13359977-13359807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):78, 44

               
               
               Conread position:373-495
               
               
               Cow position:chr23:40609516-40609395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):72, 35

               
               
               Conread position:374-526
               
               
               Cow position:chr23:40651323-40651478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):69, 42

               
               
               Conread position:405-510
               
               
               Cow position:chr23:7095507-7095612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:87
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):45, 14

               
               
               Conread position:312-527
               
               
               Cow position:chr24:28335371-28335595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):11, 86

               
               
               Conread position:314-512
               
               
               Cow position:chr24:39765043-39764851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):27, 73

               
               
               Conread position:318-477
               
               
               Cow position:chr24:6246202-6246372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):12, 96

               
               
               Conread position:323-537
               
               
               Cow position:chr24:14337906-14337692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):54, 94

               
               
               Conread position:325-518
               
               
               Cow position:chr24:22939866-22939669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):22, 86

               
               
               Conread position:327-500
               
               
               Cow position:chr24:4785501-4785680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):45, 32

               
               
               Conread position:327-532
               
               
               Cow position:chr24:39742986-39742779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):27, 91

               
               
               Conread position:328-530
               
               
               Cow position:chr24:1438098-1438304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):18, 91

               
               
               Conread position:328-530
               
               
               Cow position:chr24:25678192-25677996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 29

               
               
               Conread position:331-508
               
               
               Cow position:chr24:6677824-6677634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):44, 177

               
               
               Conread position:331-530
               
               
               Cow position:chr24:40809195-40809397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):16, 69

               
               
               Conread position:332-525
               
               
               Cow position:chr24:12136311-12136110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):44, 89

               
               
               Conread position:332-526
               
               
               Cow position:chr24:23176531-23176729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):17, 30

               
               
               Conread position:333-530
               
               
               Cow position:chr24:2970439-2970641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):37, 89

               
               
               Conread position:334-512
               
               
               Cow position:chr24:41458280-41458104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 74

               
               
               Conread position:334-518
               
               
               Cow position:chr24:2143916-2143726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):42, 87

               
               
               Conread position:334-527
               
               
               Cow position:chr24:31378917-31378724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):12, 83

               
               
               Conread position:334-542
               
               
               Cow position:chr24:6507602-6507814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):14, 88

               
               
               Conread position:335-490
               
               
               Cow position:chr24:44929515-44929353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):42, 86

               
               
               Conread position:335-517
               
               
               Cow position:chr24:42916223-42916400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):115, 8

               
               
               Conread position:335-537
               
               
               Cow position:chr24:42942953-42943163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):36, 78

               
               
               Conread position:336-527
               
               
               Cow position:chr24:19754743-19754544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):42, 91

               
               
               Conread position:336-542
               
               
               Cow position:chr24:39350060-39350263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):40, 73

               
               
               Conread position:339-529
               
               
               Cow position:chr24:7079945-7079752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):30, 63

               
               
               Conread position:339-542
               
               
               Cow position:chr24:2964480-2964679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):37, 71

               
               
               Conread position:339-542
               
               
               Cow position:chr24:27054569-27054363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):111, 74

               
               
               Conread position:342-537
               
               
               Cow position:chr24:23824272-23824464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):10, 42

               
               
               Conread position:343-478
               
               
               Cow position:chr24:15909779-15909636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):31, 70

               
               
               Conread position:343-518
               
               
               Cow position:chr24:38292013-38291837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):106, 65

               
               
               Conread position:343-524
               
               
               Cow position:chr24:24755606-24755417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:343-525
               
               
               Cow position:chr24:6427861-6427674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):31, 76

               
               
               Conread position:343-537
               
               
               Cow position:chr24:18786771-18786959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):107, 35

               
               
               Conread position:343-537
               
               
               Cow position:chr24:28279781-28279582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):35, 76

               
               
               Conread position:343-541
               
               
               Cow position:chr24:22888751-22888545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):15, 76

               
               
               Conread position:344-518
               
               
               Cow position:chr24:16055354-16055535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):27, 77

               
               
               Conread position:344-526
               
               
               Cow position:chr24:34368850-34369038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):28, 73

               
               
               Conread position:344-530
               
               
               Cow position:chr24:32158118-32158308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):34, 66

               
               
               Conread position:349-527
               
               
               Cow position:chr24:14617810-14617625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):9, 70

               
               
               Conread position:353-530
               
               
               Cow position:chr24:28349731-28349540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):26, 131

               
               
               Conread position:356-527
               
               
               Cow position:chr24:26455986-26455809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):23, 61

               
               
               Conread position:374-530
               
               
               Cow position:chr24:25165157-25164998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):76, 43

               
               
               Conread position:375-542
               
               
               Cow position:chr24:12452905-12452737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):78, 41

               
               
               Conread position:378-530
               
               
               Cow position:chr24:35827855-35827702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):74, 38

               
               
               Conread position:380-542
               
               
               Cow position:chr24:39474287-39474457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):72, 32

               
               
               Conread position:400-542
               
               
               Cow position:chr24:27900824-27900683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):55, 16

               
               
               Conread position:409-542
               
               
               Cow position:chr24:32085841-32085976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:309-496
               
               
               Cow position:chr25:20614934-20614745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):69, 14

               
               
               Conread position:312-524
               
               
               Cow position:chr25:35109049-35109277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):65, 27

               
               
               Conread position:316-505
               
               
               Cow position:chr25:31732107-31732310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:316-515
               
               
               Cow position:chr25:26089601-26089812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:322-497
               
               
               Cow position:chr25:27534498-27534666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):128, 17

               
               
               Conread position:325-487
               
               
               Cow position:chr25:11041129-11040968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):118, 26

               
               
               Conread position:325-513
               
               
               Cow position:chr25:4716453-4716260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:326-521
               
               
               Cow position:chr25:24405536-24405738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):52, 95

               
               
               Conread position:326-542
               
               
               Cow position:chr25:6178235-6178008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):16, 99

               
               
               Conread position:327-530
               
               
               Cow position:chr25:27534722-27534932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):27, 95

               
               
               Conread position:328-530
               
               
               Cow position:chr25:33204889-33205092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):26, 92

               
               
               Conread position:328-542
               
               
               Cow position:chr25:14570562-14570349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):121, 88

               
               
               Conread position:329-525
               
               
               Cow position:chr25:33111789-33111976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):32, 63

               
               
               Conread position:329-530
               
               
               Cow position:chr25:26240735-26240525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):21, 94

               
               
               Conread position:329-542
               
               
               Cow position:chr25:22575333-22575550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):23, 86

               
               
               Conread position:332-521
               
               
               Cow position:chr25:8511902-8512092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):46, 11

               
               
               Conread position:333-527
               
               
               Cow position:chr25:12932816-12932615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):45, 84

               
               
               Conread position:339-521
               
               
               Cow position:chr25:15025092-15024907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):36, 70

               
               
               Conread position:339-530
               
               
               Cow position:chr25:24136260-24136448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):15, 70

               
               
               Conread position:339-541
               
               
               Cow position:chr25:19524260-19524454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):40, 82

               
               
               Conread position:339-542
               
               
               Cow position:chr25:14075487-14075279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):33, 78

               
               
               Conread position:341-518
               
               
               Cow position:chr25:5365715-5365527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):7, 79

               
               
               Conread position:341-526
               
               
               Cow position:chr25:40339064-40338881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):6, 65

               
               
               Conread position:343-530
               
               
               Cow position:chr25:26457497-26457691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):35, 78

               
               
               Conread position:343-532
               
               
               Cow position:chr25:34970636-34970448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 60

               
               
               Conread position:343-537
               
               
               Cow position:chr25:41093957-41094156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):29, 70

               
               
               Conread position:344-521
               
               
               Cow position:chr25:18448990-18448808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):34, 77

               
               
               Conread position:344-523
               
               
               Cow position:chr25:18000352-18000536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):28, 76

               
               
               Conread position:344-540
               
               
               Cow position:chr25:18266341-18266139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):32, 74

               
               
               Conread position:345-468
               
               
               Cow position:chr25:18811037-18810913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):34, 52

               
               
               Conread position:345-529
               
               
               Cow position:chr25:36501062-36501254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):27, 76

               
               
               Conread position:347-527
               
               
               Cow position:chr25:8576869-8576683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):27, 71

               
               
               Conread position:348-541
               
               
               Cow position:chr25:20624762-20624956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):30, 57

               
               
               Conread position:348-542
               
               
               Cow position:chr25:10748332-10748526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):102, 27

               
               
               Conread position:351-490
               
               
               Cow position:chr25:18228348-18228204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):27, 62

               
               
               Conread position:351-517
               
               
               Cow position:chr25:23248569-23248741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):21, 66

               
               
               Conread position:353-491
               
               
               Cow position:chr25:37469904-37469766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):96, 55

               
               
               Conread position:353-521
               
               
               Cow position:chr25:13321348-13321177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):93, 63

               
               
               Conread position:353-527
               
               
               Cow position:chr25:23410829-23410657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):25, 68

               
               
               Conread position:353-532
               
               
               Cow position:chr25:17701822-17702010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):25, 66

               
               
               Conread position:353-542
               
               
               Cow position:chr25:20076668-20076471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):19, 68

               
               
               Conread position:357-515
               
               
               Cow position:chr25:27504038-27504196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):92, 60

               
               
               Conread position:357-542
               
               
               Cow position:chr25:13560048-13560237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):30, 62

               
               
               Conread position:367-523
               
               
               Cow position:chr25:18161434-18161281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:367-530
               
               
               Cow position:chr25:20428469-20428306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):83, 33

               
               
               Conread position:372-502
               
               
               Cow position:chr25:20884942-20885072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):77, 36

               
               
               Conread position:372-527
               
               
               Cow position:chr25:29312191-29312345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):114, 33

               
               
               Conread position:372-530
               
               
               Cow position:chr25:10011913-10012072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):12, 40

               
               
               Conread position:372-537
               
               
               Cow position:chr25:40956841-40957005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):81, 44

               
               
               Conread position:374-527
               
               
               Cow position:chr25:13562576-13562427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:374-542
               
               
               Cow position:chr25:8080870-8080700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):76, 19

               
               
               Conread position:375-542
               
               
               Cow position:chr25:34378962-34379131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):75, 37

               
               
               Conread position:380-521
               
               
               Cow position:chr25:20811235-20811378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):70, 24

               
               
               Conread position:314-519
               
               
               Cow position:chr26:12652014-12652229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):18, 86

               
               
               Conread position:322-523
               
               
               Cow position:chr26:6475219-6475415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):131, 71

               
               
               Conread position:326-537
               
               
               Cow position:chr26:7956064-7955851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:168
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):52, 78

               
               
               Conread position:332-527
               
               
               Cow position:chr26:11567767-11567960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):12, 77

               
               
               Conread position:333-468
               
               
               Cow position:chr26:2623077-2623214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):110, 10

               
               
               Conread position:333-542
               
               
               Cow position:chr26:782724-782936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):45, 76

               
               
               Conread position:337-524
               
               
               Cow position:chr26:15212016-15211814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:337-530
               
               
               Cow position:chr26:32865685-32865887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):18, 85

               
               
               Conread position:340-474
               
               
               Cow position:chr26:19649187-19649051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):109, 68

               
               
               Conread position:340-526
               
               
               Cow position:chr26:31466877-31466691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):38, 58

               
               
               Conread position:340-530
               
               
               Cow position:chr26:12669396-12669205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):12, 19

               
               
               Conread position:343-510
               
               
               Cow position:chr26:14505703-14505870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):29, 60

               
               
               Conread position:343-512
               
               
               Cow position:chr26:10292793-10292621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):107, 33

               
               
               Conread position:343-518
               
               
               Cow position:chr26:12520227-12520045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):35, 78

               
               
               Conread position:344-530
               
               
               Cow position:chr26:10137544-10137735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):30, 77

               
               
               Conread position:344-530
               
               
               Cow position:chr26:12217043-12216862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):48, 34

               
               
               Conread position:344-542
               
               
               Cow position:chr26:24182855-24183049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):34, 73

               
               
               Conread position:348-525
               
               
               Cow position:chr26:1325954-1325768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):57, 176

               
               
               Conread position:349-518
               
               
               Cow position:chr26:21860014-21859841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):61, 34

               
               
               Conread position:349-521
               
               
               Cow position:chr26:7387956-7387781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):9, 57

               
               
               Conread position:353-542
               
               
               Cow position:chr26:9632175-9632375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):26, 67

               
               
               Conread position:355-530
               
               
               Cow position:chr26:19111099-19110918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):23, 57

               
               
               Conread position:355-537
               
               
               Cow position:chr26:14080890-14080705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):22, 41

               
               
               Conread position:357-537
               
               
               Cow position:chr26:34118856-34119037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):29, 19

               
               
               Conread position:367-515
               
               
               Cow position:chr26:17203974-17204124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):10, 46

               
               
               Conread position:367-517
               
               
               Cow position:chr26:19903550-19903400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):80, 49

               
               
               Conread position:370-527
               
               
               Cow position:chr26:16604453-16604295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):82, 6

               
               
               Conread position:370-542
               
               
               Cow position:chr26:8651441-8651610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):79, 34

               
               
               Conread position:372-499
               
               
               Cow position:chr26:21577935-21578064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):78, 33

               
               
               Conread position:372-527
               
               
               Cow position:chr26:19768640-19768798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):78, 44

               
               
               Conread position:372-530
               
               
               Cow position:chr26:9101947-9102104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):83, 45

               
               
               Conread position:372-542
               
               
               Cow position:chr26:7162246-7162418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):78, 44

               
               
               Conread position:374-537
               
               
               Cow position:chr26:12579851-12580011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:382-527
               
               
               Cow position:chr26:3019262-3019406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):68, 34

               
               
               Conread position:387-526
               
               
               Cow position:chr26:30605216-30605348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):63, 29

               
               
               Conread position:312-516
               
               
               Cow position:chr27:3922742-3922537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):29, 92

               
               
               Conread position:317-527
               
               
               Cow position:chr27:12244377-12244161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):52, 32

               
               
               Conread position:319-528
               
               
               Cow position:chr27:2847608-2847818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):58, 24

               
               
               Conread position:322-528
               
               
               Cow position:chr27:16526088-16525879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):50, 89

               
               
               Conread position:325-542
               
               
               Cow position:chr27:13958590-13958364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):15, 98

               
               
               Conread position:328-526
               
               
               Cow position:chr27:30811215-30811415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):48, 79

               
               
               Conread position:329-527
               
               
               Cow position:chr27:25879862-25880066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):9, 15

               
               
               Conread position:331-537
               
               
               Cow position:chr27:21578813-21578599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):47, 90

               
               
               Conread position:332-497
               
               
               Cow position:chr27:17875379-17875207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):46, 89

               
               
               Conread position:332-527
               
               
               Cow position:chr27:24333850-24333657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):20, 77

               
               
               Conread position:332-530
               
               
               Cow position:chr27:20766191-20765992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):25, 82

               
               
               Conread position:332-540
               
               
               Cow position:chr27:20812668-20812883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):60, 42

               
               
               Conread position:332-542
               
               
               Cow position:chr27:6159751-6159960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):40, 29

               
               
               Conread position:332-542
               
               
               Cow position:chr27:14937667-14937450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):22, 80

               
               
               Conread position:333-527
               
               
               Cow position:chr27:27053069-27053259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):117, 49

               
               
               Conread position:333-530
               
               
               Cow position:chr27:24225132-24224932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):41, 85

               
               
               Conread position:333-537
               
               
               Cow position:chr27:6883806-6884008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):120, 40

               
               
               Conread position:334-528
               
               
               Cow position:chr27:13005613-13005809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 88

               
               
               Conread position:334-530
               
               
               Cow position:chr27:8048966-8048772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):53, 48

               
               
               Conread position:335-530
               
               
               Cow position:chr27:25998472-25998670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):118, 81

               
               
               Conread position:336-531
               
               
               Cow position:chr27:8430672-8430469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):41, 77

               
               
               Conread position:336-540
               
               
               Cow position:chr27:24341669-24341883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):44, 87

               
               
               Conread position:339-530
               
               
               Cow position:chr27:19544151-19543952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):12, 81

               
               
               Conread position:339-542
               
               
               Cow position:chr27:30365088-30365298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):40, 83

               
               
               Conread position:340-488
               
               
               Cow position:chr27:30784522-30784375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):13, 65

               
               
               Conread position:340-518
               
               
               Cow position:chr27:25982947-25982768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):30, 77

               
               
               Conread position:340-521
               
               
               Cow position:chr27:11746359-11746547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):38, 81

               
               
               Conread position:340-525
               
               
               Cow position:chr27:7662796-7662983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):48, 77

               
               
               Conread position:342-542
               
               
               Cow position:chr27:13970608-13970410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):12, 82

               
               
               Conread position:343-542
               
               
               Cow position:chr27:11356757-11356562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):34, 76

               
               
               Conread position:343-542
               
               
               Cow position:chr27:23662819-23662617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):28, 66

               
               
               Conread position:344-495
               
               
               Cow position:chr27:1674924-1675082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 69

               
               
               Conread position:344-537
               
               
               Cow position:chr27:29039165-29038966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):63, 44

               
               
               Conread position:345-498
               
               
               Cow position:chr27:26441272-26441113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):32, 76

               
               
               Conread position:345-530
               
               
               Cow position:chr27:12247463-12247646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):24, 61

               
               
               Conread position:347-541
               
               
               Cow position:chr27:6453986-6454187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):25, 76

               
               
               Conread position:351-530
               
               
               Cow position:chr27:24509607-24509787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):99, 31

               
               
               Conread position:351-542
               
               
               Cow position:chr27:21681535-21681345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):99, 19

               
               
               Conread position:353-524
               
               
               Cow position:chr27:27050121-27049949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):41, 25

               
               
               Conread position:355-492
               
               
               Cow position:chr27:1899785-1899642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):23, 37

               
               
               Conread position:366-511
               
               
               Cow position:chr27:18219202-18219342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):84, 12

               
               
               Conread position:367-524
               
               
               Cow position:chr27:21393709-21393545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:372-542
               
               
               Cow position:chr27:19083909-19083736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):78, 36

               
               
               Conread position:374-530
               
               
               Cow position:chr27:26161314-26161469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):75, 42

               
               
               Conread position:379-525
               
               
               Cow position:chr27:13977731-13977584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):71, 34

               
               
               Conread position:409-526
               
               
               Cow position:chr27:22781890-22782011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):41, 27

               
               
               Conread position:291-530
               
               
               Cow position:chr28:12999334-12999091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):28, 43

               
               
               Conread position:304-542
               
               
               Cow position:chr28:15678117-15677867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):14, 121

               
               
               Conread position:325-504
               
               
               Cow position:chr28:6578276-6578090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):9, 88

               
               
               Conread position:325-541
               
               
               Cow position:chr28:7539952-7540175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):11, 95

               
               
               Conread position:325-542
               
               
               Cow position:chr28:1202040-1202259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):27, 96

               
               
               Conread position:326-495
               
               
               Cow position:chr28:34749939-34749763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):48, 23

               
               
               Conread position:327-527
               
               
               Cow position:chr28:6643077-6643286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:332-493
               
               
               Cow position:chr28:22331249-22331088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):118, 31

               
               
               Conread position:332-542
               
               
               Cow position:chr28:8789351-8789139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):22, 83

               
               
               Conread position:333-530
               
               
               Cow position:chr28:5980113-5979916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):110, 16

               
               
               Conread position:334-511
               
               
               Cow position:chr28:15406250-15406073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):104, 74

               
               
               Conread position:334-537
               
               
               Cow position:chr28:4764073-4763866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):63, 44

               
               
               Conread position:334-537
               
               
               Cow position:chr28:21570371-21570177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):44, 15

               
               
               Conread position:335-530
               
               
               Cow position:chr28:9294297-9294500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):42, 86

               
               
               Conread position:335-541
               
               
               Cow position:chr28:19253673-19253465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):42, 84

               
               
               Conread position:336-526
               
               
               Cow position:chr28:31165788-31165985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:161
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):42, 85

               
               
               Conread position:336-528
               
               
               Cow position:chr28:24500401-24500200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):42, 73

               
               
               Conread position:336-532
               
               
               Cow position:chr28:14508172-14508380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):24, 87

               
               
               Conread position:337-527
               
               
               Cow position:chr28:14495015-14494821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:337-530
               
               
               Cow position:chr28:17362406-17362606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):17, 83

               
               
               Conread position:337-542
               
               
               Cow position:chr28:23007530-23007749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:339-491
               
               
               Cow position:chr28:17624980-17625140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):40, 72

               
               
               Conread position:339-526
               
               
               Cow position:chr28:1608381-1608185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):28, 72

               
               
               Conread position:341-541
               
               
               Cow position:chr28:4274655-4274857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):13, 72

               
               
               Conread position:343-488
               
               
               Cow position:chr28:24700960-24700808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):35, 78

               
               
               Conread position:343-518
               
               
               Cow position:chr28:23668598-23668777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):107, 74

               
               
               Conread position:343-521
               
               
               Cow position:chr28:11007387-11007201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):19, 67

               
               
               Conread position:343-525
               
               
               Cow position:chr28:3822954-3823136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):28, 70

               
               
               Conread position:343-525
               
               
               Cow position:chr28:15081739-15081921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):107, 65

               
               
               Conread position:343-527
               
               
               Cow position:chr28:11500705-11500891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):107, 35

               
               
               Conread position:343-530
               
               
               Cow position:chr28:5406729-5406553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):107, 34

               
               
               Conread position:343-530
               
               
               Cow position:chr28:25825678-25825869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):35, 78

               
               
               Conread position:344-508
               
               
               Cow position:chr28:15591459-15591294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):98, 40

               
               
               Conread position:344-530
               
               
               Cow position:chr28:18934640-18934447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):28, 64

               
               
               Conread position:344-541
               
               
               Cow position:chr28:26372926-26372724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):31, 166

               
               
               Conread position:344-542
               
               
               Cow position:chr28:26719535-26719324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:346-524
               
               
               Cow position:chr28:34198925-34199107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):26, 65

               
               
               Conread position:346-527
               
               
               Cow position:chr28:7157015-7156833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):22, 50

               
               
               Conread position:347-502
               
               
               Cow position:chr28:22421809-22421964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):103, 29

               
               
               Conread position:350-526
               
               
               Cow position:chr28:8336136-8335959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):104, 24

               
               
               Conread position:353-537
               
               
               Cow position:chr28:11180988-11181176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):25, 64

               
               
               Conread position:356-542
               
               
               Cow position:chr28:20963354-20963548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):22, 65

               
               
               Conread position:360-518
               
               
               Cow position:chr28:7805256-7805417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):86, 57

               
               
               Conread position:367-542
               
               
               Cow position:chr28:9237472-9237295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):63, 49

               
               
               Conread position:370-529
               
               
               Cow position:chr28:20275285-20275125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):6, 47

               
               
               Conread position:372-496
               
               
               Cow position:chr28:28641009-28640889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):78, 14

               
               
               Conread position:372-526
               
               
               Cow position:chr28:5474879-5475030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):80, 44

               
               
               Conread position:372-537
               
               
               Cow position:chr28:3769517-3769678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):75, 44

               
               
               Conread position:372-541
               
               
               Cow position:chr28:25340423-25340255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):78, 20

               
               
               Conread position:373-533
               
               
               Cow position:chr28:9176607-9176760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):74, 17

               
               
               Conread position:376-527
               
               
               Cow position:chr28:13865991-13865842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:388-540
               
               
               Cow position:chr28:21873897-21873743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):64, 29

               
               
               Conread position:297-522
               
               
               Cow position:chr29:27613573-27613798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):41, 20

               
               
               Conread position:323-526
               
               
               Cow position:chr29:708931-709143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):54, 16

               
               
               Conread position:325-521
               
               
               Cow position:chr29:13126927-13127127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):125, 27

               
               
               Conread position:326-515
               
               
               Cow position:chr29:19607327-19607523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):42, 95

               
               
               Conread position:331-509
               
               
               Cow position:chr29:11071493-11071680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):17, 90

               
               
               Conread position:332-516
               
               
               Cow position:chr29:21265952-21265761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):46, 85

               
               
               Conread position:332-521
               
               
               Cow position:chr29:4444909-4444713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):46, 25

               
               
               Conread position:332-524
               
               
               Cow position:chr29:35442269-35442470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):13, 78

               
               
               Conread position:332-526
               
               
               Cow position:chr29:29302471-29302668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):97, 74

               
               
               Conread position:332-542
               
               
               Cow position:chr29:8862288-8862505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 80

               
               
               Conread position:333-524
               
               
               Cow position:chr29:12625788-12625984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):44, 79

               
               
               Conread position:333-530
               
               
               Cow position:chr29:11366424-11366225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):35, 87

               
               
               Conread position:333-530
               
               
               Cow position:chr29:30350742-30350945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):44, 17

               
               
               Conread position:334-482
               
               
               Cow position:chr29:19680-19525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):44, 79

               
               
               Conread position:334-537
               
               
               Cow position:chr29:7663082-7663289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):13, 76

               
               
               Conread position:334-542
               
               
               Cow position:chr29:4367912-4367701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):58, 17

               
               
               Conread position:334-542
               
               
               Cow position:chr29:9912362-9912150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):118, 98

               
               
               Conread position:335-528
               
               
               Cow position:chr29:15940449-15940642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 77

               
               
               Conread position:335-542
               
               
               Cow position:chr29:41083330-41083123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):24, 36

               
               
               Conread position:336-524
               
               
               Cow position:chr29:29559539-29559727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):111, 59

               
               
               Conread position:336-528
               
               
               Cow position:chr29:11766903-11766710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):18, 86

               
               
               Conread position:337-512
               
               
               Cow position:chr29:22721559-22721381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):40, 85

               
               
               Conread position:338-527
               
               
               Cow position:chr29:21186688-21186882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):34, 85

               
               
               Conread position:339-511
               
               
               Cow position:chr29:18021497-18021678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):15, 83

               
               
               Conread position:339-512
               
               
               Cow position:chr29:6208245-6208069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):39, 82

               
               
               Conread position:339-517
               
               
               Cow position:chr29:5616683-5616869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):36, 68

               
               
               Conread position:339-542
               
               
               Cow position:chr29:1340967-1340760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):42, 82

               
               
               Conread position:342-542
               
               
               Cow position:chr29:18963916-18963709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):28, 68

               
               
               Conread position:343-512
               
               
               Cow position:chr29:21012165-21012338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):33, 75

               
               
               Conread position:343-530
               
               
               Cow position:chr29:10153612-10153809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):35, 155

               
               
               Conread position:343-530
               
               
               Cow position:chr29:18073118-18072931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):35, 66

               
               
               Conread position:343-530
               
               
               Cow position:chr29:18695424-18695239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):98, 29

               
               
               Conread position:343-530
               
               
               Cow position:chr29:40337363-40337551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):28, 8

               
               
               Conread position:343-542
               
               
               Cow position:chr29:942801-942606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:343-542
               
               
               Cow position:chr29:11005911-11005709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):31, 70

               
               
               Conread position:344-488
               
               
               Cow position:chr29:8794533-8794379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):17, 70

               
               
               Conread position:344-526
               
               
               Cow position:chr29:26299150-26298965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):7, 70

               
               
               Conread position:345-527
               
               
               Cow position:chr29:5976612-5976794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):34, 23

               
               
               Conread position:345-530
               
               
               Cow position:chr29:37960799-37960988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):27, 55

               
               
               Conread position:346-498
               
               
               Cow position:chr29:15042622-15042468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):103, 62

               
               
               Conread position:347-542
               
               
               Cow position:chr29:7054587-7054394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):28, 72

               
               
               Conread position:348-518
               
               
               Cow position:chr29:21675566-21675394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):39, 29

               
               
               Conread position:350-537
               
               
               Cow position:chr29:22895901-22895706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):28, 71

               
               
               Conread position:351-521
               
               
               Cow position:chr29:27688570-27688743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):91, 65

               
               
               Conread position:353-497
               
               
               Cow position:chr29:942994-942839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:353-542
               
               
               Cow position:chr29:9512426-9512232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):93, 63

               
               
               Conread position:354-499
               
               
               Cow position:chr29:2274675-2274822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):95, 49

               
               
               Conread position:354-530
               
               
               Cow position:chr29:26129659-26129485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):89, 50

               
               
               Conread position:364-525
               
               
               Cow position:chr29:14758706-14758867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):12, 51

               
               
               Conread position:372-527
               
               
               Cow position:chr29:39023191-39023350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):80, 44

               
               
               Conread position:372-537
               
               
               Cow position:chr29:26985374-26985206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):78, 41

               
               
               Conread position:372-542
               
               
               Cow position:chr29:6772276-6772110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):71, 40

               
               
               Conread position:372-542
               
               
               Cow position:chr29:25426512-25426680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):77, 44

               
               
               Conread position:384-530
               
               
               Cow position:chr29:9937947-9938093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):66, 30

               
               
               Conread position:386-521
               
               
               Cow position:chr29:25923829-25923965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):50, 27

               
               
               Conread position:409-529
               
               
               Cow position:chr29:36435542-36435416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):41, 107

               
               
               Conread position:312-529
               
               
               Cow position:chr3:57829894-57830122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):30, 106

               
               
               Conread position:314-526
               
               
               Cow position:chr3:26493053-26493262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):136, 9

               
               
               Conread position:314-527
               
               
               Cow position:chr3:3036736-3036958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):63, 35

               
               
               Conread position:316-521
               
               
               Cow position:chr3:37187013-37186800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):32, 106

               
               
               Conread position:325-506
               
               
               Cow position:chr3:48211681-48211499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):29, 83

               
               
               Conread position:325-530
               
               
               Cow position:chr3:42480792-42480583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):19, 103

               
               
               Conread position:325-530
               
               
               Cow position:chr3:64172616-64172404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):53, 18

               
               
               Conread position:325-542
               
               
               Cow position:chr3:41718567-41718349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):29, 95

               
               
               Conread position:326-527
               
               
               Cow position:chr3:2199059-2198850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):28, 97

               
               
               Conread position:326-527
               
               
               Cow position:chr3:64536395-64536592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):50, 17

               
               
               Conread position:326-542
               
               
               Cow position:chr3:68262929-68262718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):126, 42

               
               
               Conread position:328-530
               
               
               Cow position:chr3:15654977-15655182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):114, 80

               
               
               Conread position:328-537
               
               
               Cow position:chr3:63146983-63147194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):106, 80

               
               
               Conread position:330-501
               
               
               Cow position:chr3:8746063-8746238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):51, 79

               
               
               Conread position:331-525
               
               
               Cow position:chr3:5419698-5419890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):117, 85

               
               
               Conread position:331-530
               
               
               Cow position:chr3:15221348-15221553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):47, 32

               
               
               Conread position:331-537
               
               
               Cow position:chr3:18216604-18216810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):21, 89

               
               
               Conread position:332-526
               
               
               Cow position:chr3:50281583-50281783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):46, 80

               
               
               Conread position:332-527
               
               
               Cow position:chr3:18725475-18725676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):39, 88

               
               
               Conread position:332-530
               
               
               Cow position:chr3:24353027-24352825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):37, 19

               
               
               Conread position:332-533
               
               
               Cow position:chr3:74611735-74611529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):15, 92

               
               
               Conread position:332-536
               
               
               Cow position:chr3:62291962-62292161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 41

               
               
               Conread position:332-542
               
               
               Cow position:chr3:9074174-9074393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:175
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):20, 91

               
               
               Conread position:333-527
               
               
               Cow position:chr3:25075999-25076199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):45, 10

               
               
               Conread position:333-537
               
               
               Cow position:chr3:17633880-17634085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):41, 18

               
               
               Conread position:334-498
               
               
               Cow position:chr3:26740871-26741035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):10, 45

               
               
               Conread position:334-525
               
               
               Cow position:chr3:58131158-58130965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):38, 87

               
               
               Conread position:334-542
               
               
               Cow position:chr3:51492951-51492737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):50, 87

               
               
               Conread position:335-542
               
               
               Cow position:chr3:48629427-48629637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):114, 71

               
               
               Conread position:336-530
               
               
               Cow position:chr3:53588223-53588419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):40, 32

               
               
               Conread position:336-530
               
               
               Cow position:chr3:61116692-61116889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):32, 22

               
               
               Conread position:336-531
               
               
               Cow position:chr3:65771171-65771368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):40, 76

               
               
               Conread position:336-537
               
               
               Cow position:chr3:37485636-37485839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):114, 72

               
               
               Conread position:337-496
               
               
               Cow position:chr3:68085949-68086111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):10, 85

               
               
               Conread position:337-508
               
               
               Cow position:chr3:31247825-31247654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):34, 43

               
               
               Conread position:338-526
               
               
               Cow position:chr3:51780831-51781022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):14, 96

               
               
               Conread position:338-527
               
               
               Cow position:chr3:58447904-58448092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):46, 77

               
               
               Conread position:339-515
               
               
               Cow position:chr3:36204708-36204532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):8, 32

               
               
               Conread position:339-518
               
               
               Cow position:chr3:27246786-27246983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:339-521
               
               
               Cow position:chr3:40100548-40100744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:339-525
               
               
               Cow position:chr3:26088834-26089032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):48, 82

               
               
               Conread position:339-536
               
               
               Cow position:chr3:57846770-57846973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):38, 29

               
               
               Conread position:339-542
               
               
               Cow position:chr3:41550213-41550422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):39, 82

               
               
               Conread position:340-491
               
               
               Cow position:chr3:62798627-62798781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):110, 65

               
               
               Conread position:340-518
               
               
               Cow position:chr3:68342098-68342272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):21, 72

               
               
               Conread position:340-518
               
               
               Cow position:chr3:70354077-70354256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:340-527
               
               
               Cow position:chr3:27532500-27532686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):110, 42

               
               
               Conread position:340-530
               
               
               Cow position:chr3:891424-891233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 79

               
               
               Conread position:340-534
               
               
               Cow position:chr3:75142427-75142615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:340-541
               
               
               Cow position:chr3:60389933-60389717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:340-542
               
               
               Cow position:chr3:58764906-58765125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:341-461
               
               
               Cow position:chr3:44838414-44838292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):15, 68

               
               
               Conread position:342-525
               
               
               Cow position:chr3:73741709-73741899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):12, 72

               
               
               Conread position:343-517
               
               
               Cow position:chr3:73436282-73436463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):28, 70

               
               
               Conread position:343-529
               
               
               Cow position:chr3:23111356-23111547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):35, 66

               
               
               Conread position:343-530
               
               
               Cow position:chr3:30839400-30839214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):35, 50

               
               
               Conread position:343-530
               
               
               Cow position:chr3:61411279-61411092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):35, 78

               
               
               Conread position:343-537
               
               
               Cow position:chr3:1004793-1004602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):32, 70

               
               
               Conread position:343-537
               
               
               Cow position:chr3:77225270-77225076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):29, 79

               
               
               Conread position:343-540
               
               
               Cow position:chr3:12255630-12255435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):110, 39

               
               
               Conread position:343-540
               
               
               Cow position:chr3:50614800-50614595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):39, 78

               
               
               Conread position:343-542
               
               
               Cow position:chr3:8752943-8752740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):33, 76

               
               
               Conread position:343-542
               
               
               Cow position:chr3:23091820-23092023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):35, 78

               
               
               Conread position:343-542
               
               
               Cow position:chr3:54340264-54340469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):36, 74

               
               
               Conread position:343-542
               
               
               Cow position:chr3:59608655-59608455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):32, 40

               
               
               Conread position:344-530
               
               
               Cow position:chr3:22953728-22953914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):34, 76

               
               
               Conread position:344-537
               
               
               Cow position:chr3:42584695-42584500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):30, 64

               
               
               Conread position:344-542
               
               
               Cow position:chr3:28238429-28238620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):105, 7

               
               
               Conread position:344-542
               
               
               Cow position:chr3:49131904-49132111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):13, 78

               
               
               Conread position:346-526
               
               
               Cow position:chr3:20471212-20471396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):26, 10

               
               
               Conread position:346-537
               
               
               Cow position:chr3:36100985-36100796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:156
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):103, 71

               
               
               Conread position:346-538
               
               
               Cow position:chr3:55991714-55991908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):23, 70

               
               
               Conread position:349-521
               
               
               Cow position:chr3:74846554-74846736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):28, 74

               
               
               Conread position:353-542
               
               
               Cow position:chr3:5601020-5601214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):26, 62

               
               
               Conread position:353-542
               
               
               Cow position:chr3:56483668-56483468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):24, 68

               
               
               Conread position:354-519
               
               
               Cow position:chr3:8457796-8457630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):96, 22

               
               
               Conread position:356-542
               
               
               Cow position:chr3:3736445-3736251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):22, 65

               
               
               Conread position:361-517
               
               
               Cow position:chr3:34085918-34086077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):15, 57

               
               
               Conread position:361-542
               
               
               Cow position:chr3:53091619-53091443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):17, 41

               
               
               Conread position:364-515
               
               
               Cow position:chr3:46094955-46094803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):9, 45

               
               
               Conread position:364-541
               
               
               Cow position:chr3:29507713-29507535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):77, 8

               
               
               Conread position:367-526
               
               
               Cow position:chr3:14505785-14505946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):85, 49

               
               
               Conread position:372-515
               
               
               Cow position:chr3:35278695-35278555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):69, 36

               
               
               Conread position:372-521
               
               
               Cow position:chr3:24300485-24300334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):80, 44

               
               
               Conread position:372-542
               
               
               Cow position:chr3:18458542-18458706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:372-542
               
               
               Cow position:chr3:66707945-66708114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):80, 25

               
               
               Conread position:373-542
               
               
               Cow position:chr3:34675846-34675675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):77, 44

               
               
               Conread position:374-521
               
               
               Cow position:chr3:20993936-20993786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):78, 42

               
               
               Conread position:375-530
               
               
               Cow position:chr3:35873852-35874002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:380-537
               
               
               Cow position:chr3:33327826-33327666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):70, 36

               
               
               Conread position:304-542
               
               
               Cow position:chr4:17378632-17378868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):70, 117

               
               
               Conread position:310-532
               
               
               Cow position:chr4:58834192-58834425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):68, 33

               
               
               Conread position:315-532
               
               
               Cow position:chr4:9800204-9799984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):63, 28

               
               
               Conread position:318-537
               
               
               Cow position:chr4:37035037-37035261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):56, 21

               
               
               Conread position:323-537
               
               
               Cow position:chr4:20279519-20279302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):23, 85

               
               
               Conread position:324-530
               
               
               Cow position:chr4:62412046-62411834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):54, 86

               
               
               Conread position:324-537
               
               
               Cow position:chr4:5002950-5002739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):115, 48

               
               
               Conread position:325-512
               
               
               Cow position:chr4:21063600-21063791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):30, 34

               
               
               Conread position:325-523
               
               
               Cow position:chr4:6208648-6208449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):107, 83

               
               
               Conread position:325-527
               
               
               Cow position:chr4:63471884-63472091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):43, 33

               
               
               Conread position:325-530
               
               
               Cow position:chr4:51605428-51605632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):49, 36

               
               
               Conread position:325-541
               
               
               Cow position:chr4:34369254-34369480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):51, 36

               
               
               Conread position:326-504
               
               
               Cow position:chr4:12561231-12561047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):11, 85

               
               
               Conread position:326-541
               
               
               Cow position:chr4:24433170-24432950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):52, 17

               
               
               Conread position:327-525
               
               
               Cow position:chr4:8083599-8083813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:330-469
               
               
               Cow position:chr4:63954963-63955104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):24, 9

               
               
               Conread position:330-524
               
               
               Cow position:chr4:35870391-35870192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):57, 85

               
               
               Conread position:331-504
               
               
               Cow position:chr4:43813694-43813867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):61, 17

               
               
               Conread position:331-527
               
               
               Cow position:chr4:24415740-24415550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):120, 45

               
               
               Conread position:331-531
               
               
               Cow position:chr4:51123251-51123041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):24, 87

               
               
               Conread position:331-537
               
               
               Cow position:chr4:1374539-1374337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):111, 25

               
               
               Conread position:332-537
               
               
               Cow position:chr4:20066040-20066244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):23, 75

               
               
               Conread position:332-542
               
               
               Cow position:chr4:44279749-44279967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):25, 90

               
               
               Conread position:333-516
               
               
               Cow position:chr4:2169253-2169063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):45, 88

               
               
               Conread position:333-527
               
               
               Cow position:chr4:23495093-23494905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):117, 75

               
               
               Conread position:333-542
               
               
               Cow position:chr4:29291709-29291485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):44, 183

               
               
               Conread position:335-526
               
               
               Cow position:chr4:5580740-5580543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):42, 26

               
               
               Conread position:335-533
               
               
               Cow position:chr4:2610404-2610208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):22, 79

               
               
               Conread position:336-542
               
               
               Cow position:chr4:54146294-54146493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):116, 36

               
               
               Conread position:337-526
               
               
               Cow position:chr4:23758984-23758793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):15, 73

               
               
               Conread position:338-496
               
               
               Cow position:chr4:34762156-34762319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):40, 62

               
               
               Conread position:339-515
               
               
               Cow position:chr4:10836355-10836172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):39, 24

               
               
               Conread position:339-515
               
               
               Cow position:chr4:39617140-39616968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):39, 78

               
               
               Conread position:339-527
               
               
               Cow position:chr4:26373501-26373689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):39, 58

               
               
               Conread position:339-528
               
               
               Cow position:chr4:53617001-53616812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):110, 77

               
               
               Conread position:339-542
               
               
               Cow position:chr4:2121218-2121428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):11, 71

               
               
               Conread position:339-542
               
               
               Cow position:chr4:23167077-23166877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):18, 70

               
               
               Conread position:340-525
               
               
               Cow position:chr4:961469-961664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):37, 188

               
               
               Conread position:340-530
               
               
               Cow position:chr4:10992023-10992216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):41, 81

               
               
               Conread position:340-530
               
               
               Cow position:chr4:22235504-22235310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):17, 61

               
               
               Conread position:340-542
               
               
               Cow position:chr4:22449344-22449552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):34, 81

               
               
               Conread position:340-542
               
               
               Cow position:chr4:39767527-39767323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):30, 81

               
               
               Conread position:340-542
               
               
               Cow position:chr4:56570982-56570775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):28, 18

               
               
               Conread position:343-502
               
               
               Cow position:chr4:45115604-45115770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):35, 70

               
               
               Conread position:343-521
               
               
               Cow position:chr4:38699982-38700167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):34, 69

               
               
               Conread position:343-526
               
               
               Cow position:chr4:29709585-29709781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:343-532
               
               
               Cow position:chr4:22249275-22249465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):38, 66

               
               
               Conread position:343-537
               
               
               Cow position:chr4:25973073-25972874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):35, 68

               
               
               Conread position:344-508
               
               
               Cow position:chr4:18956491-18956655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):105, 52

               
               
               Conread position:344-521
               
               
               Cow position:chr4:5913171-5913356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):10, 70

               
               
               Conread position:344-528
               
               
               Cow position:chr4:31348008-31348203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:344-542
               
               
               Cow position:chr4:21249854-21250063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 21

               
               
               Conread position:344-542
               
               
               Cow position:chr4:36945020-36945224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):34, 77

               
               
               Conread position:344-542
               
               
               Cow position:chr4:45871692-45871897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):33, 76

               
               
               Conread position:344-542
               
               
               Cow position:chr4:50769593-50769798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):33, 64

               
               
               Conread position:345-517
               
               
               Cow position:chr4:51433583-51433404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):22, 76

               
               
               Conread position:345-526
               
               
               Cow position:chr4:2596699-2596889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):27, 67

               
               
               Conread position:347-521
               
               
               Cow position:chr4:60031074-60030896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):31, 64

               
               
               Conread position:347-532
               
               
               Cow position:chr4:21365573-21365388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):31, 74

               
               
               Conread position:349-499
               
               
               Cow position:chr4:19334713-19334869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:349-527
               
               
               Cow position:chr4:5798133-5797951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):28, 70

               
               
               Conread position:351-542
               
               
               Cow position:chr4:12697796-12697609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):25, 46

               
               
               Conread position:352-521
               
               
               Cow position:chr4:52226169-52225995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):26, 61

               
               
               Conread position:353-521
               
               
               Cow position:chr4:44665207-44665382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):23, 68

               
               
               Conread position:353-527
               
               
               Cow position:chr4:40433741-40433918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):28, 65

               
               
               Conread position:353-540
               
               
               Cow position:chr4:58707010-58707208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:353-542
               
               
               Cow position:chr4:45234707-45234904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):24, 68

               
               
               Conread position:353-542
               
               
               Cow position:chr4:52088091-52087897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):39, 29

               
               
               Conread position:354-515
               
               
               Cow position:chr4:65167705-65167869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):13, 56

               
               
               Conread position:355-521
               
               
               Cow position:chr4:47446070-47445918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:355-542
               
               
               Cow position:chr4:36813539-36813347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):23, 64

               
               
               Conread position:356-526
               
               
               Cow position:chr4:37881093-37880920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):22, 43

               
               
               Conread position:356-542
               
               
               Cow position:chr4:40822950-40823144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):19, 65

               
               
               Conread position:361-542
               
               
               Cow position:chr4:9199116-9198937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):89, 59

               
               
               Conread position:364-530
               
               
               Cow position:chr4:53752670-53752507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):88, 36

               
               
               Conread position:365-542
               
               
               Cow position:chr4:14550982-14550810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):84, 51

               
               
               Conread position:372-512
               
               
               Cow position:chr4:21862729-21862871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):71, 42

               
               
               Conread position:372-521
               
               
               Cow position:chr4:27997829-27997677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):81, 44

               
               
               Conread position:372-525
               
               
               Cow position:chr4:21073014-21073166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):78, 44

               
               
               Conread position:372-527
               
               
               Cow position:chr4:17304252-17304409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):78, 47

               
               
               Conread position:373-530
               
               
               Cow position:chr4:68795157-68795311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):74, 22

               
               
               Conread position:384-530
               
               
               Cow position:chr4:45952259-45952398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):65, 32

               
               
               Conread position:302-501
               
               
               Cow position:chr5:18695402-18695203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):148, 7

               
               
               Conread position:312-515
               
               
               Cow position:chr5:71454368-71454583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):13, 113

               
               
               Conread position:313-524
               
               
               Cow position:chr5:18276716-18276502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):65, 108

               
               
               Conread position:315-493
               
               
               Cow position:chr5:27293434-27293618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):63, 17

               
               
               Conread position:316-518
               
               
               Cow position:chr5:47836789-47836574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):20, 98

               
               
               Conread position:323-540
               
               
               Cow position:chr5:23640790-23641006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):55, 86

               
               
               Conread position:324-518
               
               
               Cow position:chr5:3059145-3058950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):54, 95

               
               
               Conread position:324-527
               
               
               Cow position:chr5:51503223-51503025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):20, 47

               
               
               Conread position:325-518
               
               
               Cow position:chr5:50860091-50859892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):29, 74

               
               
               Conread position:325-518
               
               
               Cow position:chr5:56385442-56385241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):27, 90

               
               
               Conread position:325-537
               
               
               Cow position:chr5:41598485-41598704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):53, 96

               
               
               Conread position:326-530
               
               
               Cow position:chr5:41604852-41604642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):12, 98

               
               
               Conread position:327-512
               
               
               Cow position:chr5:33342649-33342832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):30, 51

               
               
               Conread position:327-524
               
               
               Cow position:chr5:25899650-25899851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):23, 74

               
               
               Conread position:331-501
               
               
               Cow position:chr5:37272610-37272438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):47, 77

               
               
               Conread position:331-524
               
               
               Cow position:chr5:23527408-23527611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):19, 88

               
               
               Conread position:332-487
               
               
               Cow position:chr5:39134040-39134203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):42, 81

               
               
               Conread position:332-512
               
               
               Cow position:chr5:33340926-33341104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):25, 46

               
               
               Conread position:332-530
               
               
               Cow position:chr5:34914336-34914538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):22, 85

               
               
               Conread position:332-542
               
               
               Cow position:chr5:23366549-23366761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):42, 85

               
               
               Conread position:333-525
               
               
               Cow position:chr5:66190203-66190007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):43, 88

               
               
               Conread position:333-527
               
               
               Cow position:chr5:58320254-58320451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):41, 17

               
               
               Conread position:333-542
               
               
               Cow position:chr5:1349573-1349789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):24, 91

               
               
               Conread position:334-511
               
               
               Cow position:chr5:27503147-27502969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):16, 55

               
               
               Conread position:334-518
               
               
               Cow position:chr5:21530892-21531079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:155
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):116, 74

               
               
               Conread position:334-527
               
               
               Cow position:chr5:31660442-31660640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):18, 65

               
               
               Conread position:335-521
               
               
               Cow position:chr5:15483252-15483055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):39, 89

               
               
               Conread position:335-526
               
               
               Cow position:chr5:41637079-41636890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):46, 84

               
               
               Conread position:335-530
               
               
               Cow position:chr5:3442660-3442464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 85

               
               
               Conread position:335-530
               
               
               Cow position:chr5:28945843-28946045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):7, 30

               
               
               Conread position:335-537
               
               
               Cow position:chr5:39695866-39695659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:336-528
               
               
               Cow position:chr5:28035959-28035760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):41, 102

               
               
               Conread position:338-530
               
               
               Cow position:chr5:29844494-29844294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):39, 83

               
               
               Conread position:338-542
               
               
               Cow position:chr5:17028309-17028097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:167
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):40, 83

               
               
               Conread position:339-506
               
               
               Cow position:chr5:25681148-25681317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):39, 82

               
               
               Conread position:339-527
               
               
               Cow position:chr5:36027937-36028126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):39, 58

               
               
               Conread position:339-537
               
               
               Cow position:chr5:75687118-75687322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):34, 22

               
               
               Conread position:339-538
               
               
               Cow position:chr5:58344072-58343865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):11, 80

               
               
               Conread position:340-529
               
               
               Cow position:chr5:54090244-54090051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:151
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:340-536
               
               
               Cow position:chr5:29756548-29756346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:340-541
               
               
               Cow position:chr5:36487483-36487691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):37, 81

               
               
               Conread position:340-542
               
               
               Cow position:chr5:27102582-27102792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):38, 83

               
               
               Conread position:343-490
               
               
               Cow position:chr5:33697345-33697494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):100, 61

               
               
               Conread position:343-492
               
               
               Cow position:chr5:5929668-5929511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):32, 70

               
               
               Conread position:343-506
               
               
               Cow position:chr5:42049888-42049723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):36, 66

               
               
               Conread position:343-518
               
               
               Cow position:chr5:3649255-3649431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):34, 66

               
               
               Conread position:343-522
               
               
               Cow position:chr5:70387999-70387804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:343-526
               
               
               Cow position:chr5:59303083-59303260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):109, 39

               
               
               Conread position:343-527
               
               
               Cow position:chr5:27411197-27411384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):107, 74

               
               
               Conread position:343-530
               
               
               Cow position:chr5:6987654-6987464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):83, 52

               
               
               Conread position:343-530
               
               
               Cow position:chr5:42782520-42782710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):107, 73

               
               
               Conread position:343-533
               
               
               Cow position:chr5:27419520-27419716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):34, 78

               
               
               Conread position:343-533
               
               
               Cow position:chr5:34279404-34279591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):107, 43

               
               
               Conread position:343-538
               
               
               Cow position:chr5:45396204-45396403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):35, 68

               
               
               Conread position:343-542
               
               
               Cow position:chr5:49946114-49945915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):44, 54

               
               
               Conread position:343-542
               
               
               Cow position:chr5:58748976-58748773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):35, 57

               
               
               Conread position:344-520
               
               
               Cow position:chr5:34441573-34441756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):25, 76

               
               
               Conread position:344-542
               
               
               Cow position:chr5:47680809-47681015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):34, 79

               
               
               Conread position:345-496
               
               
               Cow position:chr5:36825522-36825369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):12, 64

               
               
               Conread position:345-512
               
               
               Cow position:chr5:23529076-23529248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):33, 76

               
               
               Conread position:345-530
               
               
               Cow position:chr5:39442503-39442312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):33, 63

               
               
               Conread position:353-494
               
               
               Cow position:chr5:51048813-51048670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):96, 55

               
               
               Conread position:353-522
               
               
               Cow position:chr5:48178183-48178364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):19, 66

               
               
               Conread position:353-531
               
               
               Cow position:chr5:23536374-23536185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):97, 55

               
               
               Conread position:353-542
               
               
               Cow position:chr5:63328701-63328889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):97, 42

               
               
               Conread position:354-527
               
               
               Cow position:chr5:18554084-18553914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:141
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:354-542
               
               
               Cow position:chr5:46798440-46798246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):24, 67

               
               
               Conread position:355-542
               
               
               Cow position:chr5:15837698-15837887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):23, 66

               
               
               Conread position:357-515
               
               
               Cow position:chr5:17267699-17267862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):21, 62

               
               
               Conread position:357-525
               
               
               Cow position:chr5:56799078-56799247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):18, 53

               
               
               Conread position:371-518
               
               
               Cow position:chr5:7432983-7433133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):66, 47

               
               
               Conread position:372-512
               
               
               Cow position:chr5:1949883-1950022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):74, 44

               
               
               Conread position:372-516
               
               
               Cow position:chr5:21356716-21356857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):78, 21

               
               
               Conread position:372-516
               
               
               Cow position:chr5:62639079-62638932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):78, 45

               
               
               Conread position:372-521
               
               
               Cow position:chr5:61365711-61365555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):13, 49

               
               
               Conread position:372-526
               
               
               Cow position:chr5:42316740-42316890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:372-527
               
               
               Cow position:chr5:30333125-30332972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):80, 44

               
               
               Conread position:372-540
               
               
               Cow position:chr5:26594924-26595099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):70, 46

               
               
               Conread position:372-542
               
               
               Cow position:chr5:41946022-41945853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):80, 41

               
               
               Conread position:373-530
               
               
               Cow position:chr5:72363846-72364002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):137, 46

               
               
               Conread position:374-535
               
               
               Cow position:chr5:48535965-48535808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):33, 56

               
               
               Conread position:374-541
               
               
               Cow position:chr5:39875297-39875127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):79, 42

               
               
               Conread position:376-527
               
               
               Cow position:chr5:27008063-27007917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):74, 17

               
               
               Conread position:376-530
               
               
               Cow position:chr5:49655857-49656006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):73, 29

               
               
               Conread position:393-521
               
               
               Cow position:chr5:53145598-53145729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):57, 24

               
               
               Conread position:421-541
               
               
               Cow position:chr5:21534983-21535109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:298-542
               
               
               Cow position:chr6:41655768-41656026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):11, 33

               
               
               Conread position:301-542
               
               
               Cow position:chr6:46676171-46676411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):34, 58

               
               
               Conread position:312-512
               
               
               Cow position:chr6:47026730-47026523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):17, 28

               
               
               Conread position:312-527
               
               
               Cow position:chr6:36194846-36194630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):64, 103

               
               
               Conread position:315-504
               
               
               Cow position:chr6:62379950-62379759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):25, 102

               
               
               Conread position:320-530
               
               
               Cow position:chr6:15782273-15782486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):32, 98

               
               
               Conread position:322-519
               
               
               Cow position:chr6:4740938-4740749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):119, 70

               
               
               Conread position:322-542
               
               
               Cow position:chr6:24545860-24545630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):14, 102

               
               
               Conread position:324-518
               
               
               Cow position:chr6:40409-40610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 100

               
               
               Conread position:324-525
               
               
               Cow position:chr6:12652444-12652242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):15, 94

               
               
               Conread position:324-527
               
               
               Cow position:chr6:13719009-13718795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):13, 91

               
               
               Conread position:325-537
               
               
               Cow position:chr6:6943446-6943658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):125, 93

               
               
               Conread position:325-537
               
               
               Cow position:chr6:15943760-15943979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):57, 95

               
               
               Conread position:325-540
               
               
               Cow position:chr6:17534277-17534495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):11, 99

               
               
               Conread position:326-526
               
               
               Cow position:chr6:50034493-50034694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):14, 93

               
               
               Conread position:326-527
               
               
               Cow position:chr6:59496452-59496251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):52, 33

               
               
               Conread position:326-529
               
               
               Cow position:chr6:30701680-30701475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):51, 23

               
               
               Conread position:326-530
               
               
               Cow position:chr6:38914680-38914471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):52, 95

               
               
               Conread position:326-530
               
               
               Cow position:chr6:54478910-54479122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):10, 93

               
               
               Conread position:326-532
               
               
               Cow position:chr6:4023336-4023128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):124, 82

               
               
               Conread position:327-506
               
               
               Cow position:chr6:25224474-25224291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):41, 82

               
               
               Conread position:329-521
               
               
               Cow position:chr6:34549631-34549439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):48, 61

               
               
               Conread position:331-490
               
               
               Cow position:chr6:31225942-31225775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):41, 82

               
               
               Conread position:331-542
               
               
               Cow position:chr6:55475493-55475272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):18, 93

               
               
               Conread position:332-494
               
               
               Cow position:chr6:22863034-22863196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):37, 87

               
               
               Conread position:332-516
               
               
               Cow position:chr6:7707365-7707176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):46, 18

               
               
               Conread position:332-526
               
               
               Cow position:chr6:28079683-28079882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):15, 76

               
               
               Conread position:332-526
               
               
               Cow position:chr6:57118713-57118909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):46, 74

               
               
               Conread position:332-527
               
               
               Cow position:chr6:15996987-15997182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):48, 77

               
               
               Conread position:332-541
               
               
               Cow position:chr6:16626179-16625960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):118, 76

               
               
               Conread position:332-542
               
               
               Cow position:chr6:28083779-28083998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):46, 165

               
               
               Conread position:333-518
               
               
               Cow position:chr6:37612338-37612147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):39, 80

               
               
               Conread position:333-521
               
               
               Cow position:chr6:33929322-33929510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):28, 16

               
               
               Conread position:333-529
               
               
               Cow position:chr6:48572652-48572851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):43, 10

               
               
               Conread position:334-526
               
               
               Cow position:chr6:6596798-6596608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):20, 84

               
               
               Conread position:334-542
               
               
               Cow position:chr6:3078728-3078531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):24, 71

               
               
               Conread position:336-527
               
               
               Cow position:chr6:6994729-6994920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):41, 77

               
               
               Conread position:336-527
               
               
               Cow position:chr6:45596299-45596501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):41, 15

               
               
               Conread position:339-491
               
               
               Cow position:chr6:10400191-10400346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):33, 20

               
               
               Conread position:339-513
               
               
               Cow position:chr6:47772736-47772918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):31, 83

               
               
               Conread position:339-521
               
               
               Cow position:chr6:6161823-6161639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):110, 78

               
               
               Conread position:339-521
               
               
               Cow position:chr6:33917612-33917803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 85

               
               
               Conread position:339-527
               
               
               Cow position:chr6:36454368-36454565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):12, 83

               
               
               Conread position:339-530
               
               
               Cow position:chr6:53939190-53938992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):40, 65

               
               
               Conread position:339-531
               
               
               Cow position:chr6:41687795-41687994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):15, 78

               
               
               Conread position:340-513
               
               
               Cow position:chr6:23986240-23986416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):38, 68

               
               
               Conread position:340-521
               
               
               Cow position:chr6:54490502-54490696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):37, 146

               
               
               Conread position:343-502
               
               
               Cow position:chr6:48806791-48806953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):106, 65

               
               
               Conread position:343-519
               
               
               Cow position:chr6:38594018-38594197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):35, 68

               
               
               Conread position:343-521
               
               
               Cow position:chr6:20754079-20754264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):36, 70

               
               
               Conread position:343-524
               
               
               Cow position:chr6:12421067-12421257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):35, 78

               
               
               Conread position:343-528
               
               
               Cow position:chr6:47192303-47192494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):35, 65

               
               
               Conread position:343-539
               
               
               Cow position:chr6:28155932-28156140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):34, 153

               
               
               Conread position:343-541
               
               
               Cow position:chr6:37463246-37463039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):34, 79

               
               
               Conread position:343-542
               
               
               Cow position:chr6:19427668-19427473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):107, 65

               
               
               Conread position:343-542
               
               
               Cow position:chr6:32412419-32412618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):44, 73

               
               
               Conread position:344-522
               
               
               Cow position:chr6:14658821-14658642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):108, 34

               
               
               Conread position:344-522
               
               
               Cow position:chr6:28165047-28164861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):13, 78

               
               
               Conread position:344-524
               
               
               Cow position:chr6:36652639-36652456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):48, 38

               
               
               Conread position:344-530
               
               
               Cow position:chr6:56376131-56376320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):32, 70

               
               
               Conread position:344-534
               
               
               Cow position:chr6:35774761-35774960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):34, 78

               
               
               Conread position:344-537
               
               
               Cow position:chr6:24622757-24622952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):33, 56

               
               
               Conread position:344-537
               
               
               Cow position:chr6:63196941-63197142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):30, 77

               
               
               Conread position:344-537
               
               
               Cow position:chr6:65872106-65871911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):34, 11

               
               
               Conread position:344-542
               
               
               Cow position:chr6:45064795-45065001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):31, 66

               
               
               Conread position:344-542
               
               
               Cow position:chr6:53674082-53673880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):28, 46

               
               
               Conread position:349-537
               
               
               Cow position:chr6:7836118-7835940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):101, 41

               
               
               Conread position:353-527
               
               
               Cow position:chr6:11790188-11790005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):25, 68

               
               
               Conread position:353-533
               
               
               Cow position:chr6:510092-510277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):18, 58

               
               
               Conread position:353-537
               
               
               Cow position:chr6:58332094-58331909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):90, 37

               
               
               Conread position:353-542
               
               
               Cow position:chr6:2899353-2899553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):24, 68

               
               
               Conread position:355-531
               
               
               Cow position:chr6:2324014-2324194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):23, 43

               
               
               Conread position:355-537
               
               
               Cow position:chr6:7173550-7173728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):95, 17

               
               
               Conread position:355-537
               
               
               Cow position:chr6:51840496-51840300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:355-540
               
               
               Cow position:chr6:10487786-10487606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):23, 49

               
               
               Conread position:356-529
               
               
               Cow position:chr6:32277151-32276976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):27, 61

               
               
               Conread position:357-542
               
               
               Cow position:chr6:60503582-60503398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):20, 60

               
               
               Conread position:358-536
               
               
               Cow position:chr6:56041312-56041484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):10, 60

               
               
               Conread position:362-510
               
               
               Cow position:chr6:15754044-15753892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 53

               
               
               Conread position:367-542
               
               
               Cow position:chr6:51387945-51387765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):13, 48

               
               
               Conread position:372-513
               
               
               Cow position:chr6:29649294-29649151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):78, 44

               
               
               Conread position:372-518
               
               
               Cow position:chr6:28069417-28069267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):71, 5

               
               
               Conread position:372-526
               
               
               Cow position:chr6:54144491-54144339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):78, 44

               
               
               Conread position:372-529
               
               
               Cow position:chr6:20255218-20255381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):72, 44

               
               
               Conread position:372-536
               
               
               Cow position:chr6:16733603-16733442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):78, 44

               
               
               Conread position:372-537
               
               
               Cow position:chr6:3545868-3545716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:372-542
               
               
               Cow position:chr6:24583043-24583205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:372-542
               
               
               Cow position:chr6:51294474-51294301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):78, 44

               
               
               Conread position:373-542
               
               
               Cow position:chr6:64427412-64427241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):77, 43

               
               
               Conread position:374-531
               
               
               Cow position:chr6:24004725-24004562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:405-542
               
               
               Cow position:chr6:60118305-60118166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:276-527
               
               
               Cow position:chr7:1262320-1262062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):37, 65

               
               
               Conread position:308-542
               
               
               Cow position:chr7:7106523-7106764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):58, 6

               
               
               Conread position:309-507
               
               
               Cow position:chr7:40261694-40261890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):141, 34

               
               
               Conread position:309-512
               
               
               Cow position:chr7:25104630-25104419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):29, 102

               
               
               Conread position:316-542
               
               
               Cow position:chr7:26195558-26195783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):62, 27

               
               
               Conread position:319-530
               
               
               Cow position:chr7:19399436-19399646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:167
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):131, 24

               
               
               Conread position:324-521
               
               
               Cow position:chr7:29009840-29010036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:325-522
               
               
               Cow position:chr7:24869404-24869608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):28, 88

               
               
               Conread position:325-532
               
               
               Cow position:chr7:35504784-35504571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):52, 84

               
               
               Conread position:325-542
               
               
               Cow position:chr7:20918099-20918331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):11, 90

               
               
               Conread position:325-542
               
               
               Cow position:chr7:65461075-65460860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):53, 96

               
               
               Conread position:326-530
               
               
               Cow position:chr7:51086398-51086186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):52, 95

               
               
               Conread position:327-524
               
               
               Cow position:chr7:23251326-23251526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):50, 16

               
               
               Conread position:328-509
               
               
               Cow position:chr7:9054237-9054046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:328-524
               
               
               Cow position:chr7:60961235-60961045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):26, 43

               
               
               Conread position:329-542
               
               
               Cow position:chr7:33772845-33772636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):117, 48

               
               
               Conread position:331-530
               
               
               Cow position:chr7:40192985-40192778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):46, 88

               
               
               Conread position:331-537
               
               
               Cow position:chr7:53005581-53005376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):47, 24

               
               
               Conread position:331-542
               
               
               Cow position:chr7:25684814-25685022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:331-542
               
               
               Cow position:chr7:44049141-44049352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):46, 102

               
               
               Conread position:331-542
               
               
               Cow position:chr7:45593259-45593057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):76, 41

               
               
               Conread position:332-527
               
               
               Cow position:chr7:43215748-43215544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):46, 17

               
               
               Conread position:332-527
               
               
               Cow position:chr7:69066933-69066729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):45, 80

               
               
               Conread position:333-496
               
               
               Cow position:chr7:34027998-34027832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):14, 64

               
               
               Conread position:333-541
               
               
               Cow position:chr7:68088859-68088651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 80

               
               
               Conread position:334-525
               
               
               Cow position:chr7:41913467-41913662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):17, 86

               
               
               Conread position:334-526
               
               
               Cow position:chr7:21545141-21545329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):115, 36

               
               
               Conread position:334-542
               
               
               Cow position:chr7:24667618-24667402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):38, 87

               
               
               Conread position:335-521
               
               
               Cow position:chr7:36830882-36830694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):24, 84

               
               
               Conread position:335-526
               
               
               Cow position:chr7:23256631-23256820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):114, 42

               
               
               Conread position:335-527
               
               
               Cow position:chr7:57537288-57537490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):37, 8

               
               
               Conread position:336-538
               
               
               Cow position:chr7:59246183-59245978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:165
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):21, 73

               
               
               Conread position:338-542
               
               
               Cow position:chr7:25445628-25445415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):26, 76

               
               
               Conread position:339-478
               
               
               Cow position:chr7:5221079-5220933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):15, 81

               
               
               Conread position:339-509
               
               
               Cow position:chr7:58170971-58170790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:339-513
               
               
               Cow position:chr7:59076078-59075897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:339-521
               
               
               Cow position:chr7:2505398-2505588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:339-526
               
               
               Cow position:chr7:62610518-62610325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):38, 12

               
               
               Conread position:339-527
               
               
               Cow position:chr7:48547638-48547828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):55, 37

               
               
               Conread position:339-528
               
               
               Cow position:chr7:41728170-41727980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):39, 82

               
               
               Conread position:339-530
               
               
               Cow position:chr7:37445093-37444895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):39, 82

               
               
               Conread position:339-541
               
               
               Cow position:chr7:43234215-43234425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):17, 75

               
               
               Conread position:340-524
               
               
               Cow position:chr7:12754928-12755115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):47, 81

               
               
               Conread position:340-530
               
               
               Cow position:chr7:47172483-47172675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):32, 85

               
               
               Conread position:340-540
               
               
               Cow position:chr7:4512592-4512791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):38, 71

               
               
               Conread position:343-511
               
               
               Cow position:chr7:22802501-22802673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):84, 65

               
               
               Conread position:343-518
               
               
               Cow position:chr7:50255859-50255684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):97, 65

               
               
               Conread position:343-520
               
               
               Cow position:chr7:24521474-24521295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):33, 66

               
               
               Conread position:343-521
               
               
               Cow position:chr7:20633-20448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):35, 67

               
               
               Conread position:343-524
               
               
               Cow position:chr7:52536027-52536217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):31, 79

               
               
               Conread position:343-526
               
               
               Cow position:chr7:25914266-25914452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):29, 76

               
               
               Conread position:343-530
               
               
               Cow position:chr7:57311834-57311646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:159
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):11, 28

               
               
               Conread position:343-537
               
               
               Cow position:chr7:23131819-23131624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):29, 79

               
               
               Conread position:344-542
               
               
               Cow position:chr7:56081811-56081614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):26, 66

               
               
               Conread position:345-521
               
               
               Cow position:chr7:13587403-13587221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):33, 82

               
               
               Conread position:345-527
               
               
               Cow position:chr7:68956891-68956710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):33, 61

               
               
               Conread position:345-530
               
               
               Cow position:chr7:57577080-57577277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):27, 79

               
               
               Conread position:346-526
               
               
               Cow position:chr7:60575205-60575029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:346-537
               
               
               Cow position:chr7:19948434-19948628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):31, 73

               
               
               Conread position:349-517
               
               
               Cow position:chr7:45748821-45748993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):25, 64

               
               
               Conread position:353-497
               
               
               Cow position:chr7:48443337-48443487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):18, 68

               
               
               Conread position:353-525
               
               
               Cow position:chr7:66266372-66266546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):97, 62

               
               
               Conread position:353-526
               
               
               Cow position:chr7:46103734-46103561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):88, 55

               
               
               Conread position:353-542
               
               
               Cow position:chr7:10099146-10099340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 58

               
               
               Conread position:354-537
               
               
               Cow position:chr7:12233239-12233042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:355-521
               
               
               Cow position:chr7:67111705-67111873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):83, 53

               
               
               Conread position:355-530
               
               
               Cow position:chr7:61681427-61681607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):85, 61

               
               
               Conread position:355-537
               
               
               Cow position:chr7:8073889-8074076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):23, 65

               
               
               Conread position:356-527
               
               
               Cow position:chr7:22981546-22981372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):20, 64

               
               
               Conread position:357-517
               
               
               Cow position:chr7:60761560-60761407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):19, 58

               
               
               Conread position:357-526
               
               
               Cow position:chr7:14044178-14044011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):93, 51

               
               
               Conread position:358-537
               
               
               Cow position:chr7:68522640-68522821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):95, 58

               
               
               Conread position:360-521
               
               
               Cow position:chr7:45956132-45955968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):92, 56

               
               
               Conread position:367-523
               
               
               Cow position:chr7:18858528-18858377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:372-511
               
               
               Cow position:chr7:59713907-59713767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):80, 44

               
               
               Conread position:372-521
               
               
               Cow position:chr7:1350166-1350316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):78, 44

               
               
               Conread position:372-523
               
               
               Cow position:chr7:31881851-31881698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):78, 44

               
               
               Conread position:372-525
               
               
               Cow position:chr7:3748737-3748891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):68, 36

               
               
               Conread position:372-526
               
               
               Cow position:chr7:51633088-51632934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):70, 23

               
               
               Conread position:372-532
               
               
               Cow position:chr7:17922469-17922309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):80, 44

               
               
               Conread position:372-534
               
               
               Cow position:chr7:664064-664226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):77, 44

               
               
               Conread position:374-521
               
               
               Cow position:chr7:12424735-12424585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):78, 42

               
               
               Conread position:376-513
               
               
               Cow position:chr7:26466928-26466791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):74, 40

               
               
               Conread position:376-530
               
               
               Cow position:chr7:21197196-21197349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):77, 19

               
               
               Conread position:388-542
               
               
               Cow position:chr7:11872430-11872586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):53, 28

               
               
               Conread position:301-542
               
               
               Cow position:chr8:55305320-55305069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):54, 17

               
               
               Conread position:308-530
               
               
               Cow position:chr8:36505601-36505379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):70, 42

               
               
               Conread position:309-540
               
               
               Cow position:chr8:39896478-39896236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):63, 23

               
               
               Conread position:311-527
               
               
               Cow position:chr8:25573258-25573045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):19, 62

               
               
               Conread position:313-528
               
               
               Cow position:chr8:9130703-9130927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):41, 109

               
               
               Conread position:314-542
               
               
               Cow position:chr8:61442979-61443228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):63, 28

               
               
               Conread position:319-538
               
               
               Cow position:chr8:51904819-51905047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):33, 104

               
               
               Conread position:322-530
               
               
               Cow position:chr8:20682613-20682394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):24, 100

               
               
               Conread position:324-527
               
               
               Cow position:chr8:6468951-6469164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):16, 101

               
               
               Conread position:324-541
               
               
               Cow position:chr8:33218739-33218966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):26, 96

               
               
               Conread position:324-542
               
               
               Cow position:chr8:19512268-19512474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):62, 19

               
               
               Conread position:325-516
               
               
               Cow position:chr8:6330882-6330695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):124, 18

               
               
               Conread position:325-522
               
               
               Cow position:chr8:36471752-36471552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):13, 98

               
               
               Conread position:325-530
               
               
               Cow position:chr8:37007605-37007815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):18, 96

               
               
               Conread position:326-516
               
               
               Cow position:chr8:34288136-34287937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):11, 100

               
               
               Conread position:326-529
               
               
               Cow position:chr8:32827470-32827673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):52, 67

               
               
               Conread position:327-537
               
               
               Cow position:chr8:31814843-31815051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):21, 47

               
               
               Conread position:329-526
               
               
               Cow position:chr8:46203475-46203271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):15, 84

               
               
               Conread position:331-542
               
               
               Cow position:chr8:9812001-9811788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):23, 41

               
               
               Conread position:332-517
               
               
               Cow position:chr8:13900604-13900414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):46, 162

               
               
               Conread position:333-524
               
               
               Cow position:chr8:15686198-15686398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):45, 88

               
               
               Conread position:333-526
               
               
               Cow position:chr8:17078024-17077825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):35, 10

               
               
               Conread position:334-541
               
               
               Cow position:chr8:29026438-29026649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):71, 43

               
               
               Conread position:334-541
               
               
               Cow position:chr8:39017908-39017693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):23, 88

               
               
               Conread position:334-542
               
               
               Cow position:chr8:15536795-15537010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):44, 87

               
               
               Conread position:335-521
               
               
               Cow position:chr8:23161147-23160958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):17, 82

               
               
               Conread position:335-524
               
               
               Cow position:chr8:44569011-44568806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:335-530
               
               
               Cow position:chr8:9236346-9236538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):43, 80

               
               
               Conread position:335-530
               
               
               Cow position:chr8:13810403-13810204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):39, 87

               
               
               Conread position:336-503
               
               
               Cow position:chr8:36274131-36274308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):42, 77

               
               
               Conread position:336-512
               
               
               Cow position:chr8:48086405-48086589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):41, 73

               
               
               Conread position:336-522
               
               
               Cow position:chr8:23030830-23030643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):40, 82

               
               
               Conread position:339-508
               
               
               Cow position:chr8:60949545-60949722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):33, 82

               
               
               Conread position:339-532
               
               
               Cow position:chr8:28221371-28221565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):28, 70

               
               
               Conread position:339-537
               
               
               Cow position:chr8:49599732-49599931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):111, 69

               
               
               Conread position:339-542
               
               
               Cow position:chr8:29414084-29413879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:163
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):111, 10

               
               
               Conread position:339-542
               
               
               Cow position:chr8:32192895-32192677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:342-527
               
               
               Cow position:chr8:9962400-9962593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 83

               
               
               Conread position:342-530
               
               
               Cow position:chr8:11896393-11896203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):108, 60

               
               
               Conread position:343-497
               
               
               Cow position:chr8:54211064-54210901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):10, 146

               
               
               Conread position:343-513
               
               
               Cow position:chr8:39967615-39967787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):12, 78

               
               
               Conread position:343-519
               
               
               Cow position:chr8:24766776-24766952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):35, 65

               
               
               Conread position:343-524
               
               
               Cow position:chr8:20892521-20892338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):107, 29

               
               
               Conread position:343-524
               
               
               Cow position:chr8:24547209-24547025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):24, 78

               
               
               Conread position:343-525
               
               
               Cow position:chr8:54070937-54070756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):10, 62

               
               
               Conread position:343-526
               
               
               Cow position:chr8:53866295-53866113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):14, 79

               
               
               Conread position:343-527
               
               
               Cow position:chr8:9583350-9583539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):11, 78

               
               
               Conread position:343-530
               
               
               Cow position:chr8:11594231-11594036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):34, 78

               
               
               Conread position:343-530
               
               
               Cow position:chr8:21282250-21282057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):36, 70

               
               
               Conread position:343-530
               
               
               Cow position:chr8:32277835-32278017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):36, 75

               
               
               Conread position:343-530
               
               
               Cow position:chr8:49265109-49265303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):35, 52

               
               
               Conread position:343-533
               
               
               Cow position:chr8:42846518-42846711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):34, 78

               
               
               Conread position:343-537
               
               
               Cow position:chr8:35218559-35218358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):35, 68

               
               
               Conread position:343-537
               
               
               Cow position:chr8:59506888-59507085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):35, 63

               
               
               Conread position:343-538
               
               
               Cow position:chr8:8134307-8134508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):18, 80

               
               
               Conread position:343-542
               
               
               Cow position:chr8:21137089-21137280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):143, 73

               
               
               Conread position:343-542
               
               
               Cow position:chr8:37123159-37122952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):28, 78

               
               
               Conread position:344-529
               
               
               Cow position:chr8:51695192-51695382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):25, 77

               
               
               Conread position:344-542
               
               
               Cow position:chr8:13813230-13813436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):30, 77

               
               
               Conread position:346-512
               
               
               Cow position:chr8:49577117-49576950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):27, 72

               
               
               Conread position:346-518
               
               
               Cow position:chr8:49510716-49510882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):104, 26

               
               
               Conread position:346-542
               
               
               Cow position:chr8:13221665-13221867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):32, 61

               
               
               Conread position:348-524
               
               
               Cow position:chr8:27294913-27294734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):98, 60

               
               
               Conread position:348-530
               
               
               Cow position:chr8:31690992-31690808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):30, 66

               
               
               Conread position:352-530
               
               
               Cow position:chr8:55829164-55829346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):26, 69

               
               
               Conread position:353-509
               
               
               Cow position:chr8:61216651-61216815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):24, 69

               
               
               Conread position:353-519
               
               
               Cow position:chr8:16971203-16971366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):90, 56

               
               
               Conread position:353-528
               
               
               Cow position:chr8:26229130-26228956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):85, 44

               
               
               Conread position:354-542
               
               
               Cow position:chr8:34317890-34318087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):17, 66

               
               
               Conread position:355-509
               
               
               Cow position:chr8:19171438-19171592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):79, 57

               
               
               Conread position:357-528
               
               
               Cow position:chr8:26922800-26922623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):21, 52

               
               
               Conread position:357-530
               
               
               Cow position:chr8:33842926-33842754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):93, 21

               
               
               Conread position:357-530
               
               
               Cow position:chr8:43693387-43693212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):21, 41

               
               
               Conread position:357-537
               
               
               Cow position:chr8:7367300-7367484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):21, 62

               
               
               Conread position:360-537
               
               
               Cow position:chr8:50266461-50266279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):90, 48

               
               
               Conread position:360-537
               
               
               Cow position:chr8:60320690-60320514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):16, 58

               
               
               Conread position:361-510
               
               
               Cow position:chr8:32983931-32984083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):89, 55

               
               
               Conread position:365-527
               
               
               Cow position:chr8:1107024-1107187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):85, 30

               
               
               Conread position:367-532
               
               
               Cow position:chr8:43803716-43803546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):9, 48

               
               
               Conread position:367-542
               
               
               Cow position:chr8:20832159-20832338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):85, 49

               
               
               Conread position:372-524
               
               
               Cow position:chr8:33510460-33510617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:372-527
               
               
               Cow position:chr8:26451283-26451125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):25, 36

               
               
               Conread position:372-530
               
               
               Cow position:chr8:5700121-5700279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):78, 47

               
               
               Conread position:372-542
               
               
               Cow position:chr8:24426813-24426642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):80, 44

               
               
               Conread position:373-542
               
               
               Cow position:chr8:13976048-13975882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):77, 39

               
               
               Conread position:374-515
               
               
               Cow position:chr8:31645864-31646007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):76, 42

               
               
               Conread position:374-521
               
               
               Cow position:chr8:49819515-49819658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):76, 21

               
               
               Conread position:374-527
               
               
               Cow position:chr8:18033763-18033920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):79, 42

               
               
               Conread position:375-530
               
               
               Cow position:chr8:42575843-42575687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):60, 41

               
               
               Conread position:376-505
               
               
               Cow position:chr8:18743648-18743520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):74, 40

               
               
               Conread position:376-518
               
               
               Cow position:chr8:45163178-45163035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):76, 36

               
               
               Conread position:376-537
               
               
               Cow position:chr8:37487142-37487305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):76, 40

               
               
               Conread position:379-530
               
               
               Cow position:chr8:39969667-39969822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):73, 38

               
               
               Conread position:385-537
               
               
               Cow position:chr8:45987653-45987805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):65, 29

               
               
               Conread position:386-542
               
               
               Cow position:chr8:11783128-11782971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):65, 30

               
               
               Conread position:390-526
               
               
               Cow position:chr8:40371263-40371398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):62, 12

               
               
               Conread position:405-512
               
               
               Cow position:chr8:20327726-20327833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:86
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:302-542
               
               
               Cow position:chr9:49847002-49847258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):19, 254

               
               
               Conread position:314-542
               
               
               Cow position:chr9:3845382-3845160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):27, 9

               
               
               Conread position:318-524
               
               
               Cow position:chr9:8617651-8617850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):27, 65

               
               
               Conread position:319-524
               
               
               Cow position:chr9:17110596-17110802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):59, 102

               
               
               Conread position:319-526
               
               
               Cow position:chr9:34309850-34310061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 103

               
               
               Conread position:320-526
               
               
               Cow position:chr9:33668550-33668766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):34, 11

               
               
               Conread position:321-542
               
               
               Cow position:chr9:39152856-39152630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):16, 101

               
               
               Conread position:322-542
               
               
               Cow position:chr9:18237334-18237113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):36, 91

               
               
               Conread position:324-528
               
               
               Cow position:chr9:2481652-2481861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):16, 88

               
               
               Conread position:324-537
               
               
               Cow position:chr9:27292446-27292232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):57, 15

               
               
               Conread position:325-528
               
               
               Cow position:chr9:48576807-48576608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):40, 53

               
               
               Conread position:326-540
               
               
               Cow position:chr9:44584412-44584644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):46, 209

               
               
               Conread position:327-542
               
               
               Cow position:chr9:29808287-29808506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):48, 36

               
               
               Conread position:328-498
               
               
               Cow position:chr9:34431652-34431829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):51, 91

               
               
               Conread position:329-542
               
               
               Cow position:chr9:43911766-43911981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):49, 88

               
               
               Conread position:331-527
               
               
               Cow position:chr9:49651565-49651760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):19, 48

               
               
               Conread position:331-542
               
               
               Cow position:chr9:12498846-12499063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):56, 12

               
               
               Conread position:332-527
               
               
               Cow position:chr9:9315147-9315344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):114, 17

               
               
               Conread position:332-527
               
               
               Cow position:chr9:20896736-20896934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):46, 80

               
               
               Conread position:332-539
               
               
               Cow position:chr9:35708783-35708573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):46, 90

               
               
               Conread position:332-542
               
               
               Cow position:chr9:32115763-32115548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):43, 80

               
               
               Conread position:333-521
               
               
               Cow position:chr9:24429258-24429064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):45, 10

               
               
               Conread position:333-542
               
               
               Cow position:chr9:1867289-1867503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):85, 190

               
               
               Conread position:334-520
               
               
               Cow position:chr9:47108456-47108635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):166, 36

               
               
               Conread position:334-526
               
               
               Cow position:chr9:9823661-9823471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):42, 17

               
               
               Conread position:334-526
               
               
               Cow position:chr9:25468893-25469083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):44, 87

               
               
               Conread position:334-527
               
               
               Cow position:chr9:23943105-23943317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:334-530
               
               
               Cow position:chr9:23042618-23042815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):42, 76

               
               
               Conread position:334-535
               
               
               Cow position:chr9:5340454-5340656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):20, 84

               
               
               Conread position:335-511
               
               
               Cow position:chr9:27052797-27052614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):19, 79

               
               
               Conread position:335-512
               
               
               Cow position:chr9:60549570-60549388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):17, 74

               
               
               Conread position:335-526
               
               
               Cow position:chr9:42037492-42037690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):43, 74

               
               
               Conread position:336-471
               
               
               Cow position:chr9:9881864-9881731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):41, 84

               
               
               Conread position:336-501
               
               
               Cow position:chr9:45510903-45510741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):32, 22

               
               
               Conread position:336-524
               
               
               Cow position:chr9:5757157-5756953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:336-537
               
               
               Cow position:chr9:8599446-8599653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):5, 21

               
               
               Conread position:336-537
               
               
               Cow position:chr9:26559774-26559564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):37, 84

               
               
               Conread position:337-529
               
               
               Cow position:chr9:3958915-3959105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):113, 60

               
               
               Conread position:337-533
               
               
               Cow position:chr9:37099383-37099196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):113, 45

               
               
               Conread position:339-527
               
               
               Cow position:chr9:15006903-15006716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):39, 13

               
               
               Conread position:339-530
               
               
               Cow position:chr9:15951306-15951116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):56, 31

               
               
               Conread position:339-542
               
               
               Cow position:chr9:5433469-5433685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:340-521
               
               
               Cow position:chr9:5209427-5209612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):36, 80

               
               
               Conread position:340-526
               
               
               Cow position:chr9:17569208-17569018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):31, 79

               
               
               Conread position:340-526
               
               
               Cow position:chr9:43037325-43037519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):14, 82

               
               
               Conread position:340-530
               
               
               Cow position:chr9:20200145-20200334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):110, 19

               
               
               Conread position:342-526
               
               
               Cow position:chr9:26645766-26645963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):36, 77

               
               
               Conread position:343-476
               
               
               Cow position:chr9:42900748-42900884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):35, 74

               
               
               Conread position:343-499
               
               
               Cow position:chr9:62331151-62330988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):35, 78

               
               
               Conread position:343-505
               
               
               Cow position:chr9:34917349-34917168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:343-515
               
               
               Cow position:chr9:32266539-32266362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):44, 76

               
               
               Conread position:343-521
               
               
               Cow position:chr9:34568856-34568683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):54, 29

               
               
               Conread position:343-523
               
               
               Cow position:chr9:4539012-4538827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):30, 78

               
               
               Conread position:343-524
               
               
               Cow position:chr9:19902919-19903117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):14, 52

               
               
               Conread position:343-524
               
               
               Cow position:chr9:38580705-38580889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):28, 53

               
               
               Conread position:343-542
               
               
               Cow position:chr9:10667174-10666973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):48, 34

               
               
               Conread position:343-542
               
               
               Cow position:chr9:27347646-27347849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 168

               
               
               Conread position:343-542
               
               
               Cow position:chr9:34203976-34204182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):35, 78

               
               
               Conread position:344-526
               
               
               Cow position:chr9:63597685-63597867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 77

               
               
               Conread position:344-527
               
               
               Cow position:chr9:8657583-8657393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):34, 77

               
               
               Conread position:344-530
               
               
               Cow position:chr9:16118583-16118767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):108, 28

               
               
               Conread position:344-530
               
               
               Cow position:chr9:39428952-39428759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):34, 74

               
               
               Conread position:344-542
               
               
               Cow position:chr9:9200870-9200671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):24, 62

               
               
               Conread position:345-528
               
               
               Cow position:chr9:3169669-3169488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):98, 63

               
               
               Conread position:345-535
               
               
               Cow position:chr9:50828068-50827884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):105, 61

               
               
               Conread position:345-542
               
               
               Cow position:chr9:15684938-15684735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):34, 76

               
               
               Conread position:353-526
               
               
               Cow position:chr9:16745538-16745709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):25, 45

               
               
               Conread position:353-527
               
               
               Cow position:chr9:5828927-5829102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):11, 64

               
               
               Conread position:353-528
               
               
               Cow position:chr9:33059415-33059237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):28, 68

               
               
               Conread position:353-537
               
               
               Cow position:chr9:53794671-53794484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):19, 60

               
               
               Conread position:353-542
               
               
               Cow position:chr9:4580546-4580351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):52, 23

               
               
               Conread position:356-527
               
               
               Cow position:chr9:47925788-47925962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):87, 52

               
               
               Conread position:357-542
               
               
               Cow position:chr9:24837402-24837588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):21, 60

               
               
               Conread position:360-511
               
               
               Cow position:chr9:38777197-38777043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):90, 56

               
               
               Conread position:361-531
               
               
               Cow position:chr9:2863314-2863485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):89, 37

               
               
               Conread position:361-541
               
               
               Cow position:chr9:34725643-34725462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):17, 47

               
               
               Conread position:367-530
               
               
               Cow position:chr9:54206449-54206284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):80, 49

               
               
               Conread position:372-525
               
               
               Cow position:chr9:5059434-5059285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):78, 36

               
               
               Conread position:372-526
               
               
               Cow position:chr9:21537148-21537304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):68, 45

               
               
               Conread position:372-528
               
               
               Cow position:chr9:11102919-11102764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):78, 31

               
               
               Conread position:372-528
               
               
               Cow position:chr9:28983063-28983221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):71, 36

               
               
               Conread position:372-530
               
               
               Cow position:chr9:32817261-32817101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):78, 30

               
               
               Conread position:372-533
               
               
               Cow position:chr9:55562377-55562544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):69, 36

               
               
               Conread position:373-526
               
               
               Cow position:chr9:59761752-59761597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):80, 43

               
               
               Conread position:374-521
               
               
               Cow position:chr9:6214266-6214122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):76, 39

               
               
               Conread position:382-532
               
               
               Cow position:chr9:34106604-34106767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):68, 36

               
               
               Conread position:386-530
               
               
               Cow position:chr9:4858431-4858577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):64, 21

               
               
               Conread position:387-530
               
               
               Cow position:chr9:21462970-21462829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):63, 29

               
               
               Conread position:387-542
               
               
               Cow position:chr9:3931858-3932013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):60, 29

               
               
               Conread position:396-524
               
               
               Cow position:chr9:26093232-26093361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:422-530
               
               
               Cow position:chr9:44552675-44552787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:92
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:262-532
               
               
               Cow position:chrX:27287443-27287719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):38, 27

               
               
               Conread position:262-541
               
               
               Cow position:chrX:6203834-6203546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):36, 161

               
               
               Conread position:308-527
               
               
               Cow position:chrX:46084215-46083989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):70, 23

               
               
               Conread position:310-526
               
               
               Cow position:chrX:19879280-19879063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):35, 102

               
               
               Conread position:313-542
               
               
               Cow position:chrX:7806653-7806429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):137, 38

               
               
               Conread position:314-530
               
               
               Cow position:chrX:39000084-38999871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):64, 9

               
               
               Conread position:315-526
               
               
               Cow position:chrX:2647979-2648188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):135, 93

               
               
               Conread position:319-533
               
               
               Cow position:chrX:24259358-24259569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):126, 51

               
               
               Conread position:324-542
               
               
               Cow position:chrX:39126552-39126329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):52, 94

               
               
               Conread position:325-524
               
               
               Cow position:chrX:46072582-46072796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:325-527
               
               
               Cow position:chrX:18286856-18287058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):82, 18

               
               
               Conread position:325-527
               
               
               Cow position:chrX:29874141-29874352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):11, 99

               
               
               Conread position:325-537
               
               
               Cow position:chrX:25714021-25713804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):53, 27

               
               
               Conread position:325-542
               
               
               Cow position:chrX:15305068-15305296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):41, 88

               
               
               Conread position:325-542
               
               
               Cow position:chrX:26618888-26619110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):19, 76

               
               
               Conread position:326-530
               
               
               Cow position:chrX:30979909-30980120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):52, 95

               
               
               Conread position:328-542
               
               
               Cow position:chrX:36009692-36009909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):48, 21

               
               
               Conread position:332-530
               
               
               Cow position:chrX:10959175-10959380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):46, 79

               
               
               Conread position:332-530
               
               
               Cow position:chrX:32310324-32310120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):22, 77

               
               
               Conread position:332-542
               
               
               Cow position:chrX:27276918-27276698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:333-491
               
               
               Cow position:chrX:30483791-30483955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):46, 10

               
               
               Conread position:333-530
               
               
               Cow position:chrX:41084135-41083930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:166
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):35, 10

               
               
               Conread position:333-542
               
               
               Cow position:chrX:41560054-41560252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):11, 77

               
               
               Conread position:334-518
               
               
               Cow position:chrX:19678061-19678240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):115, 74

               
               
               Conread position:334-526
               
               
               Cow position:chrX:2786346-2786537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):116, 49

               
               
               Conread position:334-530
               
               
               Cow position:chrX:6563738-6563539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):10, 76

               
               
               Conread position:335-523
               
               
               Cow position:chrX:6677044-6676848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):40, 87

               
               
               Conread position:336-542
               
               
               Cow position:chrX:20801973-20801772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):116, 34

               
               
               Conread position:338-542
               
               
               Cow position:chrX:39415155-39415367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):38, 80

               
               
               Conread position:339-478
               
               
               Cow position:chrX:30862550-30862407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:339-503
               
               
               Cow position:chrX:41732987-41733157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):13, 77

               
               
               Conread position:339-522
               
               
               Cow position:chrX:32431833-32431647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):111, 67

               
               
               Conread position:340-527
               
               
               Cow position:chrX:46700637-46700829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):33, 80

               
               
               Conread position:340-542
               
               
               Cow position:chrX:29121254-29121050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):52, 37

               
               
               Conread position:341-530
               
               
               Cow position:chrX:21664513-21664704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):37, 76

               
               
               Conread position:343-492
               
               
               Cow position:chrX:22285080-22284936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):107, 27

               
               
               Conread position:343-497
               
               
               Cow position:chrX:1503538-1503375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):11, 79

               
               
               Conread position:343-497
               
               
               Cow position:chrX:37140679-37140517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):11, 79

               
               
               Conread position:343-518
               
               
               Cow position:chrX:10302547-10302367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):35, 74

               
               
               Conread position:343-526
               
               
               Cow position:chrX:20791610-20791796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):106, 61

               
               
               Conread position:343-528
               
               
               Cow position:chrX:43426501-43426312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):12, 62

               
               
               Conread position:343-529
               
               
               Cow position:chrX:34470920-34470736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):35, 72

               
               
               Conread position:343-530
               
               
               Cow position:chrX:17630599-17630788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):106, 27

               
               
               Conread position:343-531
               
               
               Cow position:chrX:24131948-24132135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):107, 52

               
               
               Conread position:343-542
               
               
               Cow position:chrX:6041004-6041206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):100, 65

               
               
               Conread position:343-542
               
               
               Cow position:chrX:9539529-9539330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):35, 72

               
               
               Conread position:343-542
               
               
               Cow position:chrX:9839431-9839232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):29, 72

               
               
               Conread position:343-542
               
               
               Cow position:chrX:23414166-23414365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):35, 78

               
               
               Conread position:344-522
               
               
               Cow position:chrX:28835550-28835739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):32, 74

               
               
               Conread position:344-527
               
               
               Cow position:chrX:15049692-15049513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):10, 45

               
               
               Conread position:344-532
               
               
               Cow position:chrX:6674706-6674906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):28, 77

               
               
               Conread position:344-542
               
               
               Cow position:chrX:39545782-39545972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):101, 64

               
               
               Conread position:345-525
               
               
               Cow position:chrX:18142252-18142433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):105, 73

               
               
               Conread position:345-542
               
               
               Cow position:chrX:161628-161415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):31, 188

               
               
               Conread position:345-542
               
               
               Cow position:chrX:25338392-25338192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):30, 63

               
               
               Conread position:346-537
               
               
               Cow position:chrX:20377170-20376979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):28, 75

               
               
               Conread position:348-508
               
               
               Cow position:chrX:22326319-22326157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):102, 68

               
               
               Conread position:348-512
               
               
               Cow position:chrX:29675704-29675533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):24, 65

               
               
               Conread position:348-537
               
               
               Cow position:chrX:25388047-25388229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):102, 30

               
               
               Conread position:349-537
               
               
               Cow position:chrX:7497437-7497251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):47, 58

               
               
               Conread position:351-533
               
               
               Cow position:chrX:19930845-19930665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):26, 62

               
               
               Conread position:353-502
               
               
               Cow position:chrX:37186359-37186206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 68

               
               
               Conread position:353-512
               
               
               Cow position:chrX:39338909-39339072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):100, 61

               
               
               Conread position:353-519
               
               
               Cow position:chrX:39832612-39832442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):24, 71

               
               
               Conread position:353-521
               
               
               Cow position:chrX:7646456-7646275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 68

               
               
               Conread position:353-526
               
               
               Cow position:chrX:17964326-17964503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):97, 54

               
               
               Conread position:353-542
               
               
               Cow position:chrX:3154055-3154239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):96, 17

               
               
               Conread position:355-495
               
               
               Cow position:chrX:488873-488729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):23, 64

               
               
               Conread position:356-508
               
               
               Cow position:chrX:10289436-10289589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):94, 56

               
               
               Conread position:356-533
               
               
               Cow position:chrX:8780240-8780057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):22, 62

               
               
               Conread position:357-524
               
               
               Cow position:chrX:29407828-29408000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):21, 34

               
               
               Conread position:360-528
               
               
               Cow position:chrX:17042868-17042700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):90, 16

               
               
               Conread position:372-497
               
               
               Cow position:chrX:3951216-3951089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):79, 36

               
               
               Conread position:372-516
               
               
               Cow position:chrX:16291845-16291990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):80, 41

               
               
               Conread position:372-524
               
               
               Cow position:chrX:35759760-35759915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):74, 44

               
               
               Conread position:372-526
               
               
               Cow position:chrX:15329818-15329662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):78, 30

               
               
               Conread position:372-527
               
               
               Cow position:chrX:12304736-12304579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):78, 21

               
               
               Conread position:372-527
               
               
               Cow position:chrX:27771402-27771554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):75, 42

               
               
               Conread position:372-530
               
               
               Cow position:chrX:42011457-42011296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):81, 44

               
               
               Conread position:372-537
               
               
               Cow position:chrX:630134-630301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):69, 44

               
               
               Conread position:372-542
               
               
               Cow position:chrX:29761508-29761681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):71, 36

               
               
               Conread position:372-542
               
               
               Cow position:chrX:31602833-31602661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):70, 44

               
               
               Conread position:373-526
               
               
               Cow position:chrX:48089229-48089385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):77, 31

               
               
               Conread position:374-526
               
               
               Cow position:chrX:28930009-28929862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):76, 42

               
               
               Conread position:374-527
               
               
               Cow position:chrX:2301098-2300943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):76, 45

               
               
               Conread position:374-530
               
               
               Cow position:chrX:31340884-31340726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):76, 42

               
               
               Conread position:375-530
               
               
               Cow position:chrX:17542132-17541975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):76, 47

               
               
               Conread position:376-527
               
               
               Cow position:chrX:27176142-27176294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):76, 36

               
               
               Conread position:376-530
               
               
               Cow position:chrX:16419318-16419166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):74, 40

               
               
               Conread position:377-542
               
               
               Cow position:chrX:23179112-23179277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):73, 24

               
               
               Conread position:422-542
               
               
               Cow position:chrX:28111637-28111513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):28, 0