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Cow genome map

           
Conread name:
           
Pig2-45C03
        

               
Conread position:
               
1-122
               

               
Cow position:
               
chr1:34857732-34857611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-149
               

               
Cow position:
               
chr1:97145597-97145448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
38, 110
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:40089084-40089267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-184
               

               
Cow position:
               
chr1:69534641-69534825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
116, 77
               

               
Conread position:
               
1-186
               

               
Cow position:
               
chr1:89185747-89185553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
1-186
               

               
Cow position:
               
chr1:101983671-101983495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
1-187
               

               
Cow position:
               
chr1:92433484-92433666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
123, 37
               

               
Conread position:
               
1-188
               

               
Cow position:
               
chr1:21955105-21954917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
123, 75
               

               
Conread position:
               
1-188
               

               
Cow position:
               
chr1:26930509-26930322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
123, 27
               

               
Conread position:
               
1-188
               

               
Cow position:
               
chr1:50764850-50765039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-188
               

               
Cow position:
               
chr1:52434740-52434929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-188
               

               
Cow position:
               
chr1:61724563-61724374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
26, 100
               

               
Conread position:
               
1-188
               

               
Cow position:
               
chr1:71666718-71666529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
123, 107
               

               
Conread position:
               
1-188
               

               
Cow position:
               
chr1:83576432-83576242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
35, 107
               

               
Conread position:
               
1-189
               

               
Cow position:
               
chr1:21994164-21993974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
1-189
               

               
Cow position:
               
chr1:25553520-25553710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
122, 106
               

               
Conread position:
               
1-189
               

               
Cow position:
               
chr1:30495272-30495462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
123, 73
               

               
Conread position:
               
1-189
               

               
Cow position:
               
chr1:70053134-70053324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:55327527-55327301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
47, 113
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:78291275-78291493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
126, 106
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr1:57640044-57639798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
68, 76
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr1:74939661-74939921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr1:101008143-101007891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
187, 32
               

               
Conread position:
               
1-248
               

               
Cow position:
               
chr1:81362991-81363252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
123, 32
               

               
Conread position:
               
1-249
               

               
Cow position:
               
chr1:1349106-1348843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr1:43380547-43380301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
123, 32
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr1:90235493-90235221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr1:21506829-21506564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-254
               

               
Cow position:
               
chr1:63240420-63240678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
14, 108
               

               
Conread position:
               
1-255
               

               
Cow position:
               
chr1:27146203-27145945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr1:101776136-101776396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
188, 32
               

               
Conread position:
               
1-257
               

               
Cow position:
               
chr1:16589177-16589443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
119, 75
               

               
Conread position:
               
1-257
               

               
Cow position:
               
chr1:89766825-89766544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
107, 159
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr1:12804407-12804680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
106, 175
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr1:26702740-26702467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr1:44154730-44154995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
189, 107
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr1:53369430-53369700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
121, 106
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr1:63906034-63905767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
123, 97
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr1:68845998-68845750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
123, 97
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr1:100537098-100537370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr1:101792631-101792366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
189, 106
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr1:86511620-86511892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-260
               

               
Cow position:
               
chr1:21835242-21835505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
104, 206
               

               
Conread position:
               
1-260
               

               
Cow position:
               
chr1:67009274-67008997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
38, 26
               

               
Conread position:
               
1-260
               

               
Cow position:
               
chr1:73443166-73442888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
35, 27
               

               
Conread position:
               
1-260
               

               
Cow position:
               
chr1:80184282-80184007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
123, 90
               

               
Conread position:
               
1-261
               

               
Cow position:
               
chr1:27494955-27495229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
124, 106
               

               
Conread position:
               
1-261
               

               
Cow position:
               
chr1:46694199-46693923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-261
               

               
Cow position:
               
chr1:47791356-47791083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
123, 47
               

               
Conread position:
               
1-261
               

               
Cow position:
               
chr1:54732982-54732711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
187, 40
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr1:100436363-100436639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr1:4374875-4374603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
32, 38
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr1:24581101-24581376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
123, 12
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr1:63042140-63041864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
123, 14
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr1:68854650-68854917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
123, 14
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr1:84786368-84786091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr1:8470445-8470166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
129, 106
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr1:9262214-9262492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
119, 113
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr1:45006925-45007202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr1:52068230-52068510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
41, 107
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr1:85776744-85776465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr1:94227088-94226812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
123, 20
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr1:7686180-7685900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr1:12057536-12057257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
123, 80
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr1:15311319-15311605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
39, 110
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr1:24236059-24235781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr1:31646712-31646432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 107
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr1:38687932-38688212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr1:50670532-50670813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr1:53397441-53397721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr1:56190701-56190421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr1:61747702-61747423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 106
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr1:68282255-68282531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
122, 27
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr1:70068693-70068415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr1:72104606-72104884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
123, 75
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr1:76419573-76419853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
122, 106
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr1:76617771-76617492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
129, 106
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr1:77553475-77553195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr1:77620003-77620283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
123, 97
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr1:82091612-82091889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
104, 215
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr1:82162474-82162193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr1:82880142-82880402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
188, 94
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr1:85142497-85142212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
126, 106
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr1:94879363-94879085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
123, 18
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr1:96193442-96193157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr1:99224292-99224013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
123, 12
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr1:102321407-102321119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:2318173-2317899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
123, 5
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:3930402-3930119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:4218648-4218363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
123, 113
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:4337475-4337757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
35, 27
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:7324755-7325038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:9376661-9376379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
123, 105
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:9526283-9526566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:9593697-9593415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:10071390-10071107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:10624409-10624692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
129, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:10790559-10790842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
121, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:12283075-12283356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:13439010-13439288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
123, 105
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:14240349-14240066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
123, 35
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:16820324-16820607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:16839035-16839318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:18196313-18196596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:19235779-19235497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:20522222-20521944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
32, 38
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:20527878-20528161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
121, 37
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:20950156-20950435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
123, 52
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:21092550-21092831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 27
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:22483885-22483616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:22637934-22637654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
84, 41
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:22728505-22728788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
90, 108
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:23659084-23659368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
123, 175
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:23670074-23669792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
81, 27
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:24571421-24571147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
119, 28
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:25178287-25178004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:26514892-26514611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
123, 92
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:28876813-28877096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:29429322-29429603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:30066088-30066377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:30372609-30372892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:31341588-31341314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
123, 32
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:32562821-32562538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
92, 174
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:32768204-32767922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
123, 52
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:32960489-32960205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
41, 107
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:33547682-33547399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
122, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:33910082-33910365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
129, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:34874693-34874976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:35071040-35071322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
123, 9
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:39234789-39234505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:39913557-39913284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
187, 22
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:40603742-40604026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
53, 114
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:40648270-40648551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:40766468-40766752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
21, 107
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:41696518-41696801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
123, 109
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:44094997-44094716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:46885548-46885834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
35, 107
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:46930236-46929953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:47653852-47653569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
32, 38
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:47923150-47922867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:48731380-48731084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
29, 107
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:50657060-50656775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
107, 176
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:51980685-51980967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
123, 44
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:52171127-52170844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
23, 78
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:52354956-52354675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
112, 173
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:52371871-52372154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:52753718-52753426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
122, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:52979383-52979666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:53458161-53458445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
35, 108
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:53578770-53579052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:54933645-54933934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
107, 180
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:55292925-55292642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:55429525-55429244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 52
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:55780586-55780877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:56140678-56140393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:56411758-56412040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:57087790-57087508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:57571550-57571833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:58340632-58340913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
82, 75
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:60033145-60032858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:60114487-60114770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
129, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:60342692-60342975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
123, 107
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:61070477-61070740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
123, 25
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:61331245-61330964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
126, 105
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:62711472-62711189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:63340755-63340473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:63602070-63601788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:64613424-64613707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:64941830-64941547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:65390279-65390562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:65480670-65480953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:65943502-65943220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
122, 113
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:66491295-66491577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:67006592-67006874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
123, 27
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:67188707-67188423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
121, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:68253047-68253331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
9, 44
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:68798968-68798682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:71691271-71691554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:72462595-72462878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
129, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:72812873-72813155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:72987173-72987456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:73433413-73433131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
123, 113
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:73756552-73756833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
123, 26
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:73995148-73995429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
35, 27
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:74283606-74283324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
123, 156
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:75403612-75403896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
92, 107
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:76207797-76207517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:78921291-78921009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:79334268-79333986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:79590555-79590840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:79843927-79844209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
123, 80
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:81309079-81309362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:82479701-82479984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
121, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:82482402-82482120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
123, 27
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:82909108-82908826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
120, 35
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:83059924-83059641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:83136652-83136935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:84449343-84449625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:85028420-85028701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
123, 90
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:85163374-85163092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
123, 42
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:85361311-85361595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:86114217-86114500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:86597269-86597556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:88983685-88983407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
84, 27
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:89089819-89089536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:89344369-89344649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
123, 14
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:89349434-89349717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
55, 83
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:89432121-89432405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
122, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:90393041-90392758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
119, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:90913546-90913824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
123, 22
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:96963785-96964059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
189, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:97075785-97075496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:98618380-98618656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
123, 40
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:99398334-99398617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:99837629-99837346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:100510292-100510572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
124, 83
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:100708228-100707953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
113, 86
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr1:2744816-2745088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
82, 75
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr1:5178405-5178121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
123, 27
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr1:8602259-8601976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
123, 37
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr1:22012247-22011961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr1:30531315-30531033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
110, 33
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr1:36645734-36645450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr1:37110359-37110075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
129, 106
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr1:40689165-40689447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
163, 99
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr1:43893379-43893669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
107, 14
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr1:52507904-52507621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
122, 106
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr1:53308941-53308651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
45, 107
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr1:53424645-53424933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
123, 43
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr1:67290330-67290609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
123, 72
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr1:68827514-68827237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
123, 27
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr1:76020222-76019939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr1:85795665-85795949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr1:17938035-17937750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr1:26606757-26606472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr1:56748024-56748308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
79, 73
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr1:68783200-68782917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
123, 27
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr1:83594319-83594034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr1:95071163-95071450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr1:96184550-96184266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
118, 106
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr1:99792246-99792530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr1:101973494-101973209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
92, 62
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr1:42874485-42874201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
35, 113
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr1:38418532-38418828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
122, 27
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr1:69941507-69941215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 106
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr1:72284837-72284549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
123, 15
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr1:81779386-81779682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
85, 177
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chr1:74086093-74085803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
123, 73
               

               
Conread position:
               
1-283
               

               
Cow position:
               
chr1:33716679-33716971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
123, 27
               

               
Conread position:
               
1-283
               

               
Cow position:
               
chr1:67821760-67821462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr1:22295976-22295679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
123, 145
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr1:26935062-26934778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
123, 21
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr1:30034008-30034305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
124, 106
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr1:66871091-66870802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
122, 107
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr1:82920423-82920124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr1:89084125-89084426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
92, 174
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr1:22616193-22615905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
187, 106
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr1:78795283-78794995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
188, 56
               

               
Conread position:
               
1-289
               

               
Cow position:
               
chr1:39100496-39100799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
122, 106
               

               
Conread position:
               
1-291
               

               
Cow position:
               
chr1:6165695-6165987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
122, 106
               

               
Conread position:
               
1-291
               

               
Cow position:
               
chr1:8514980-8515275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
118, 32
               

               
Conread position:
               
1-291
               

               
Cow position:
               
chr1:12871567-12871261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
23, 107
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chr1:3340379-3340689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-294
               

               
Cow position:
               
chr1:96478153-96478447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
123, 82
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr1:58419380-58419691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
38, 99
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chr1:77103387-77103080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
123, 49
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr1:29901537-29901217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 29
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chr1:54163384-54163062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
123, 107
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chr1:66242348-66242036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
196, 97
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chr1:69963592-69963275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
122, 106
               

               
Conread position:
               
1-303
               

               
Cow position:
               
chr1:19517715-19517398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 106
               

               
Conread position:
               
1-303
               

               
Cow position:
               
chr1:38712431-38712754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-303
               

               
Cow position:
               
chr1:55145997-55146320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 106
               

               
Conread position:
               
1-303
               

               
Cow position:
               
chr1:56408030-56408347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
32, 38
               

               
Conread position:
               
1-303
               

               
Cow position:
               
chr1:75743981-75744303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
123, 15
               

               
Conread position:
               
1-303
               

               
Cow position:
               
chr1:98612665-98612985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
1-304
               

               
Cow position:
               
chr1:1743844-1743514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
122, 40
               

               
Conread position:
               
1-304
               

               
Cow position:
               
chr1:89492523-89492202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-305
               

               
Cow position:
               
chr1:86578447-86578772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
48, 107
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chr1:21577270-21577593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
123, 107
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chr1:68951102-68951420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
124, 14
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chr1:82338357-82338032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 107
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chr1:82370125-82370456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
33, 108
               

               
Conread position:
               
2-188
               

               
Cow position:
               
chr1:53613747-53613561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
122, 16
               

               
Conread position:
               
2-189
               

               
Cow position:
               
chr1:77100440-77100251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
122, 108
               

               
Conread position:
               
2-262
               

               
Cow position:
               
chr1:46821468-46821748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
155, 105
               

               
Conread position:
               
2-263
               

               
Cow position:
               
chr1:15743536-15743813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
118, 105
               

               
Conread position:
               
2-263
               

               
Cow position:
               
chr1:90605126-90604849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
9, 106
               

               
Conread position:
               
2-265
               

               
Cow position:
               
chr1:22629173-22628902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
122, 75
               

               
Conread position:
               
2-265
               

               
Cow position:
               
chr1:50911783-50911518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
186, 105
               

               
Conread position:
               
2-268
               

               
Cow position:
               
chr1:3382196-3381914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
122, 115
               

               
Conread position:
               
2-268
               

               
Cow position:
               
chr1:35785497-35785778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
59, 36
               

               
Conread position:
               
2-268
               

               
Cow position:
               
chr1:76223233-76222951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
117, 105
               

               
Conread position:
               
2-268
               

               
Cow position:
               
chr1:81859756-81859487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 106
               

               
Conread position:
               
2-283
               

               
Cow position:
               
chr1:20385168-20384871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
34, 106
               

               
Conread position:
               
3-260
               

               
Cow position:
               
chr1:61006099-61005830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
119, 107
               

               
Conread position:
               
3-262
               

               
Cow position:
               
chr1:21376843-21376568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
121, 104
               

               
Conread position:
               
3-263
               

               
Cow position:
               
chr1:20798541-20798815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
111, 103
               

               
Conread position:
               
3-265
               

               
Cow position:
               
chr1:17876530-17876253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
59, 105
               

               
Conread position:
               
3-265
               

               
Cow position:
               
chr1:23370844-23370568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
121, 71
               

               
Conread position:
               
3-265
               

               
Cow position:
               
chr1:97284914-97284639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
15, 68
               

               
Conread position:
               
3-268
               

               
Cow position:
               
chr1:9015628-9015909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
62, 106
               

               
Conread position:
               
3-268
               

               
Cow position:
               
chr1:13250828-13250547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
30, 36
               

               
Conread position:
               
3-268
               

               
Cow position:
               
chr1:27309340-27309059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
117, 104
               

               
Conread position:
               
3-268
               

               
Cow position:
               
chr1:62223643-62223924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
121, 104
               

               
Conread position:
               
3-268
               

               
Cow position:
               
chr1:63049285-63049566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
121, 111
               

               
Conread position:
               
3-268
               

               
Cow position:
               
chr1:91888528-91888247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
121, 104
               

               
Conread position:
               
3-269
               

               
Cow position:
               
chr1:102424095-102424377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
32, 19
               

               
Conread position:
               
3-270
               

               
Cow position:
               
chr1:54199920-54199638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 104
               

               
Conread position:
               
3-270
               

               
Cow position:
               
chr1:75966873-75967157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
60, 74
               

               
Conread position:
               
3-284
               

               
Cow position:
               
chr1:56425632-56425930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
120, 111
               

               
Conread position:
               
3-303
               

               
Cow position:
               
chr1:56619226-56618919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 104
               

               
Conread position:
               
3-303
               

               
Cow position:
               
chr1:101834093-101834410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
126, 75
               

               
Conread position:
               
4-186
               

               
Cow position:
               
chr1:21523472-21523652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
120, 24
               

               
Conread position:
               
4-188
               

               
Cow position:
               
chr1:54207362-54207170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
4-264
               

               
Cow position:
               
chr1:28517251-28516979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
119, 36
               

               
Conread position:
               
4-268
               

               
Cow position:
               
chr1:95500040-95499755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
97, 32
               

               
Conread position:
               
4-268
               

               
Cow position:
               
chr1:102289734-102289456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
119, 37
               

               
Conread position:
               
4-269
               

               
Cow position:
               
chr1:59019233-59019514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
19, 105
               

               
Conread position:
               
4-295
               

               
Cow position:
               
chr1:53650367-53650675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
120, 103
               

               
Conread position:
               
5-184
               

               
Cow position:
               
chr1:55135224-55135405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
119, 105
               

               
Conread position:
               
5-268
               

               
Cow position:
               
chr1:5813595-5813869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
119, 102
               

               
Conread position:
               
5-268
               

               
Cow position:
               
chr1:42053862-42053585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 103
               

               
Conread position:
               
5-268
               

               
Cow position:
               
chr1:97251273-97250994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
119, 102
               

               
Conread position:
               
5-269
               

               
Cow position:
               
chr1:10881246-10881519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
119, 86
               

               
Conread position:
               
6-254
               

               
Cow position:
               
chr1:99571872-99571612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
117, 101
               

               
Conread position:
               
6-268
               

               
Cow position:
               
chr1:72087307-72087585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
121, 30
               

               
Conread position:
               
7-169
               

               
Cow position:
               
chr1:1403986-1403823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
117, 100
               

               
Conread position:
               
7-188
               

               
Cow position:
               
chr1:96135964-96136148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
7-264
               

               
Cow position:
               
chr1:8828744-8829019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
118, 100
               

               
Conread position:
               
7-270
               

               
Cow position:
               
chr1:92370898-92370617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
117, 100
               

               
Conread position:
               
8-268
               

               
Cow position:
               
chr1:11854226-11853950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
116, 99
               

               
Conread position:
               
8-297
               

               
Cow position:
               
chr1:57969613-57969303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
115, 90
               

               
Conread position:
               
9-189
               

               
Cow position:
               
chr1:44126831-44126650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
115, 54
               

               
Conread position:
               
10-268
               

               
Cow position:
               
chr1:3739466-3739739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
10-268
               

               
Cow position:
               
chr1:17457260-17457536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
7, 99
               

               
Conread position:
               
10-269
               

               
Cow position:
               
chr1:91799518-91799244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
114, 57
               

               
Conread position:
               
11-188
               

               
Cow position:
               
chr1:74948376-74948196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
24, 11
               

               
Conread position:
               
11-268
               

               
Cow position:
               
chr1:77648483-77648214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
113, 26
               

               
Conread position:
               
12-282
               

               
Cow position:
               
chr1:35768918-35769202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
14, 57
               

               
Conread position:
               
14-268
               

               
Cow position:
               
chr1:22229568-22229838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
27, 19
               

               
Conread position:
               
15-268
               

               
Cow position:
               
chr1:43650181-43649932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
107, 130
               

               
Conread position:
               
15-268
               

               
Cow position:
               
chr1:102743605-102743874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
109, 92
               

               
Conread position:
               
16-167
               

               
Cow position:
               
chr1:84602782-84602628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
23, 134
               

               
Conread position:
               
16-258
               

               
Cow position:
               
chr1:81180509-81180255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
175, 92
               

               
Conread position:
               
16-261
               

               
Cow position:
               
chr1:31190631-31190371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
108, 91
               

               
Conread position:
               
16-262
               

               
Cow position:
               
chr1:74302390-74302131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
69, 92
               

               
Conread position:
               
16-270
               

               
Cow position:
               
chr1:61679709-61679451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
108, 91
               

               
Conread position:
               
17-164
               

               
Cow position:
               
chr1:31771087-31771232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
17-263
               

               
Cow position:
               
chr1:64717162-64716900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
107, 91
               

               
Conread position:
               
18-268
               

               
Cow position:
               
chr1:51732596-51732327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
9, 92
               

               
Conread position:
               
18-272
               

               
Cow position:
               
chr1:37646799-37646528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
106, 90
               

               
Conread position:
               
18-306
               

               
Cow position:
               
chr1:79165863-79165584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
104, 89
               

               
Conread position:
               
19-264
               

               
Cow position:
               
chr1:56718789-56719049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
17, 89
               

               
Conread position:
               
19-265
               

               
Cow position:
               
chr1:100325260-100325000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
111, 88
               

               
Conread position:
               
19-274
               

               
Cow position:
               
chr1:14561483-14561205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
20-268
               

               
Cow position:
               
chr1:95176411-95176675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
104, 90
               

               
Conread position:
               
20-269
               

               
Cow position:
               
chr1:1981632-1981371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
104, 8
               

               
Conread position:
               
20-286
               

               
Cow position:
               
chr1:98576960-98577234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
100, 43
               

               
Conread position:
               
21-268
               

               
Cow position:
               
chr1:39834778-39835041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
103, 17
               

               
Conread position:
               
21-277
               

               
Cow position:
               
chr1:55163403-55163675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
102, 86
               

               
Conread position:
               
21-303
               

               
Cow position:
               
chr1:52955697-52955997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
103, 87
               

               
Conread position:
               
22-286
               

               
Cow position:
               
chr1:3323332-3323610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
103, 85
               

               
Conread position:
               
23-249
               

               
Cow position:
               
chr1:69078496-69078254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
23-263
               

               
Cow position:
               
chr1:74821929-74822185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
101, 85
               

               
Conread position:
               
23-265
               

               
Cow position:
               
chr1:84169981-84170239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
23-269
               

               
Cow position:
               
chr1:56129282-56129025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
113, 83
               

               
Conread position:
               
23-290
               

               
Cow position:
               
chr1:79255732-79256019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
102, 84
               

               
Conread position:
               
24-186
               

               
Cow position:
               
chr1:58216860-58216696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
100, 83
               

               
Conread position:
               
24-268
               

               
Cow position:
               
chr1:96928775-96928525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
164, 12
               

               
Conread position:
               
25-186
               

               
Cow position:
               
chr1:71748561-71748398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
99, 83
               

               
Conread position:
               
27-268
               

               
Cow position:
               
chr1:55260956-55260690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
28-188
               

               
Cow position:
               
chr1:732537-732376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
96, 42
               

               
Conread position:
               
28-265
               

               
Cow position:
               
chr1:75249721-75249973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
96, 78
               

               
Conread position:
               
29-188
               

               
Cow position:
               
chr1:874124-874285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
95, 78
               

               
Conread position:
               
29-265
               

               
Cow position:
               
chr1:10632236-10632473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
86, 9
               

               
Conread position:
               
30-268
               

               
Cow position:
               
chr1:38479311-38479559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
17, 78
               

               
Conread position:
               
31-269
               

               
Cow position:
               
chr1:55019968-55020228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
34-265
               

               
Cow position:
               
chr1:78184197-78184444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
90, 73
               

               
Conread position:
               
35-260
               

               
Cow position:
               
chr1:19442329-19442571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
35-268
               

               
Cow position:
               
chr1:98534693-98534452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
89, 72
               

               
Conread position:
               
35-303
               

               
Cow position:
               
chr1:22835867-22836152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 72
               

               
Conread position:
               
38-268
               

               
Cow position:
               
chr1:4014440-4014194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
86, 70
               

               
Conread position:
               
38-268
               

               
Cow position:
               
chr1:72069337-72069087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
82, 70
               

               
Conread position:
               
39-265
               

               
Cow position:
               
chr1:15546969-15547206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
85, 67
               

               
Conread position:
               
41-268
               

               
Cow position:
               
chr1:4368588-4368345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
83, 66
               

               
Conread position:
               
42-260
               

               
Cow position:
               
chr1:31719986-31720219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
81, 65
               

               
Conread position:
               
42-264
               

               
Cow position:
               
chr1:4589982-4589745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
82, 65
               

               
Conread position:
               
42-295
               

               
Cow position:
               
chr1:87215963-87216214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
81, 127
               

               
Conread position:
               
43-265
               

               
Cow position:
               
chr1:12419966-12419722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
81, 106
               

               
Conread position:
               
43-265
               

               
Cow position:
               
chr1:54179174-54179409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
80, 27
               

               
Conread position:
               
44-276
               

               
Cow position:
               
chr1:44136945-44136703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
18, 64
               

               
Conread position:
               
45-263
               

               
Cow position:
               
chr1:83478-83713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
45-270
               

               
Cow position:
               
chr1:18282740-18282986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
79, 62
               

               
Conread position:
               
45-302
               

               
Cow position:
               
chr1:84812449-84812178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
79, 62
               

               
Conread position:
               
46-258
               

               
Cow position:
               
chr1:68818310-68818079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
70, 32
               

               
Conread position:
               
46-268
               

               
Cow position:
               
chr1:51910121-51909884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
78, 61
               

               
Conread position:
               
46-269
               

               
Cow position:
               
chr1:82656362-82656587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
78, 61
               

               
Conread position:
               
47-268
               

               
Cow position:
               
chr1:53422952-53423191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
77, 107
               

               
Conread position:
               
47-268
               

               
Cow position:
               
chr1:58067202-58066966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
46, 54
               

               
Conread position:
               
48-268
               

               
Cow position:
               
chr1:8513502-8513267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
76, 59
               

               
Conread position:
               
48-268
               

               
Cow position:
               
chr1:22221353-22221118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
76, 59
               

               
Conread position:
               
48-268
               

               
Cow position:
               
chr1:42740787-42741023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
76, 59
               

               
Conread position:
               
51-269
               

               
Cow position:
               
chr1:57957351-57957117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
73, 113
               

               
Conread position:
               
52-268
               

               
Cow position:
               
chr1:1916994-1916761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
38, 56
               

               
Conread position:
               
52-268
               

               
Cow position:
               
chr1:52593089-52592857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
72, 55
               

               
Conread position:
               
53-268
               

               
Cow position:
               
chr1:77530333-77530560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
71, 54
               

               
Conread position:
               
53-268
               

               
Cow position:
               
chr1:84904713-84904942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
71, 54
               

               
Conread position:
               
54-265
               

               
Cow position:
               
chr1:81569525-81569299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
68, 52
               

               
Conread position:
               
54-268
               

               
Cow position:
               
chr1:68912266-68912495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
70, 53
               

               
Conread position:
               
55-274
               

               
Cow position:
               
chr1:25282425-25282193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
69, 49
               

               
Conread position:
               
57-303
               

               
Cow position:
               
chr1:69425817-69425552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
26, 19
               

               
Conread position:
               
58-258
               

               
Cow position:
               
chr1:71797381-71797167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
66, 49
               

               
Conread position:
               
60-280
               

               
Cow position:
               
chr1:84255278-84255506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
64, 16
               

               
Conread position:
               
62-269
               

               
Cow position:
               
chr1:11873837-11873614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
26, 35
               

               
Conread position:
               
63-268
               

               
Cow position:
               
chr1:21572564-21572783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
67, 13
               

               
Conread position:
               
63-305
               

               
Cow position:
               
chr1:69678860-69678603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
53, 45
               

               
Conread position:
               
67-258
               

               
Cow position:
               
chr1:42359798-42359987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
121, 41
               

               
Conread position:
               
72-265
               

               
Cow position:
               
chr1:101822968-101822759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
52, 35
               

               
Conread position:
               
72-284
               

               
Cow position:
               
chr1:57888840-57889066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
52, 35
               

               
Conread position:
               
78-261
               

               
Cow position:
               
chr1:522808-523003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
46, 32
               

               
Conread position:
               
78-268
               

               
Cow position:
               
chr1:67577611-67577805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
46, 29
               

               
Conread position:
               
78-284
               

               
Cow position:
               
chr1:10519289-10519511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
46, 30
               

               
Conread position:
               
78-285
               

               
Cow position:
               
chr1:68446265-68446045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
43, 30
               

               
Conread position:
               
88-269
               

               
Cow position:
               
chr1:32355271-32355075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
36, 19
               

               
Conread position:
               
105-264
               

               
Cow position:
               
chr1:11772513-11772345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
19, 5
               

               
Conread position:
               
123-303
               

               
Cow position:
               
chr1:41252842-41252657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
65, 94
               

               
Conread position:
               
129-284
               

               
Cow position:
               
chr1:90836405-90836245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
79, 158
               

               
Conread position:
               
1-118
               

               
Cow position:
               
chr10:14982233-14982116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
41, 32
               

               
Conread position:
               
1-151
               

               
Cow position:
               
chr10:36878713-36878563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-172
               

               
Cow position:
               
chr10:58937914-58937742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
150, 117
               

               
Conread position:
               
1-180
               

               
Cow position:
               
chr10:11137960-11138141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-184
               

               
Cow position:
               
chr10:7737219-7737402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
123, 97
               

               
Conread position:
               
1-184
               

               
Cow position:
               
chr10:62285976-62286163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
9, 108
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr10:11469026-11469212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
124, 106
               

               
Conread position:
               
1-186
               

               
Cow position:
               
chr10:288258-288071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-188
               

               
Cow position:
               
chr10:24022856-24022667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
122, 106
               

               
Conread position:
               
1-188
               

               
Cow position:
               
chr10:31028228-31028039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
123, 107
               

               
Conread position:
               
1-188
               

               
Cow position:
               
chr10:31116332-31116516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
1-188
               

               
Cow position:
               
chr10:43683096-43683285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-188
               

               
Cow position:
               
chr10:47542188-47542380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
121, 60
               

               
Conread position:
               
1-188
               

               
Cow position:
               
chr10:58066709-58066520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-189
               

               
Cow position:
               
chr10:51320747-51320933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
122, 106
               

               
Conread position:
               
1-189
               

               
Cow position:
               
chr10:63777781-63777971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
1-192
               

               
Cow position:
               
chr10:11967424-11967228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
1-192
               

               
Cow position:
               
chr10:21422843-21422650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
122, 106
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chr10:1415666-1415862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
123, 107
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr10:41267990-41268187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr10:10554334-10554553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
122, 107
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr10:130656-130912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
1-248
               

               
Cow position:
               
chr10:20367468-20367202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
123, 34
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr10:12553670-12553941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr10:17705306-17705580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr10:19401467-19401731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
121, 106
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr10:25245-25517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
123, 105
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr10:9287500-9287768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
123, 49
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr10:22093292-22093020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
124, 97
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr10:22646713-22646986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr10:23328567-23328293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 107
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr10:24277340-24277065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
35, 108
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr10:30456432-30456151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
45, 115
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr10:31669998-31670266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
40, 32
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr10:31734425-31734693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
123, 53
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr10:32174167-32174440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
121, 106
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr10:55580827-55580559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
187, 134
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr10:185794-186069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
35, 107
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr10:12473807-12474066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
123, 35
               

               
Conread position:
               
1-260
               

               
Cow position:
               
chr10:21425823-21425548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-260
               

               
Cow position:
               
chr10:53357061-53357334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-261
               

               
Cow position:
               
chr10:65070993-65070719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
123, 29
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr10:1979246-1978969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
123, 107
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr10:12956277-12956555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
41, 158
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr10:24755861-24756137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
123, 80
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr10:25342017-25342290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
35, 45
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr10:30745829-30746106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
121, 106
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr10:41150388-41150111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
35, 107
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr10:6172758-6173041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
115, 49
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr10:10048118-10048392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
35, 27
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr10:11275075-11275354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr10:21709487-21709210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
123, 52
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr10:1381228-1381507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
123, 113
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr10:14430213-14429937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
123, 49
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr10:27748175-27748452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 52
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr10:34661890-34661614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
123, 29
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr10:34680421-34680700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr10:37819134-37818854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr10:39211515-39211795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
28, 107
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr10:41736745-41737011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
190, 56
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr10:1720110-1719830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
123, 55
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr10:3537987-3538265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr10:11110991-11111270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr10:13418157-13417879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
122, 27
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr10:17221933-17221653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr10:20377929-20378207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 107
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr10:21338704-21338984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr10:22537758-22538037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
123, 27
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr10:32009536-32009816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
123, 106
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr10:45499549-45499270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
123, 49
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr10:50038753-50039034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 108
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr10:51158671-51158953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
123, 107
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr10:51836734-51836452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
35, 27
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr10:53075439-53075718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
35, 27
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr10:53685793-53686072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
123, 88
               
1-265UCSC Genome Browser

               
Conread position:
               

               

               
Cow position:
               
chr10:53908281-53908004 (view  custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
123, 106
               
1-265UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr10:56834705-56834985 (view  custom track)

               
               
               
Alignm length:
282

               
               
               
Alignm identity:
206

               
               
               
Alignm E-value:
4.99997e-41

               
               
               
Alignm gaps (pig, cow):
123, 107
1-265UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr10:61600779-61600510 (view  custom track)

               
               
               
Alignm length:
271

               
               
               
Alignm identity:
181

               
               
               
Alignm E-value:
1e-28

               
               
               
Alignm gaps (pig, cow):
8, 107

               
               
               Conread position:1-267
               
               
               Cow position:chr10:1185430-1185143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):84, 27

               
               
               Conread position:1-267
               
               
               Cow position:chr10:42124392-42124113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):30, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr10:277616-277333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:1488287-1488556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:1723357-1723609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:197
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr10:3274668-3274950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):131, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:3496038-3496321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:3976139-3976423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):67, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr10:4117652-4117935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:6539520-6539803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:6550966-6551248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):34, 113

               
               
               Conread position:1-268
               
               
               Cow position:chr10:6586259-6586542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:7273997-7273714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:7278362-7278079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:8459949-8460235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:212
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr10:8475291-8475571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):123, 28

               
               
               Conread position:1-268
               
               
               Cow position:chr10:9681431-9681148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:10082339-10082060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):32, 39

               
               
               Conread position:1-268
               
               
               Cow position:chr10:10519708-10519985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):123, 40

               
               
               Conread position:1-268
               
               
               Cow position:chr10:10573280-10573559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:212
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:10585862-10586145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:11529559-11529276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:11682119-11681838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:14332099-14331814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):106, 176

               
               
               Conread position:1-268
               
               
               Cow position:chr10:14942562-14942279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:14963821-14963541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):123, 44

               
               
               Conread position:1-268
               
               
               Cow position:chr10:15754099-15754377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):123, 14

               
               
               Conread position:1-268
               
               
               Cow position:chr10:16985457-16985733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 94

               
               
               Conread position:1-268
               
               
               Cow position:chr10:19104760-19104473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):98, 171

               
               
               Conread position:1-268
               
               
               Cow position:chr10:19140587-19140303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:19294885-19294602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:19514950-19515230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):123, 44

               
               
               Conread position:1-268
               
               
               Cow position:chr10:19522410-19522135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):129, 52

               
               
               Conread position:1-268
               
               
               Cow position:chr10:19831052-19831338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:208
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:20295235-20294957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 141

               
               
               Conread position:1-268
               
               
               Cow position:chr10:20388090-20387807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:20446532-20446809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):123, 11

               
               
               Conread position:1-268
               
               
               Cow position:chr10:20506411-20506693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):53, 76

               
               
               Conread position:1-268
               
               
               Cow position:chr10:22105221-22105502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-268
               
               
               Cow position:chr10:22528474-22528191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:23378951-23378669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):123, 95

               
               
               Conread position:1-268
               
               
               Cow position:chr10:23412788-23413066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:23648552-23648268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr10:23877197-23876914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:24222744-24222463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):123, 82

               
               
               Conread position:1-268
               
               
               Cow position:chr10:24313438-24313155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-268
               
               
               Cow position:chr10:24743706-24743989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr10:24751821-24752100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):123, 98

               
               
               Conread position:1-268
               
               
               Cow position:chr10:25259450-25259738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr10:26145153-26144868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr10:26732221-26731940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):183, 109

               
               
               Conread position:1-268
               
               
               Cow position:chr10:26922546-26922262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr10:28030016-28029729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):73, 110

               
               
               Conread position:1-268
               
               
               Cow position:chr10:28236233-28236516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:29091168-29090893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):189, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:29174965-29175240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):197, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:29211389-29211667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):123, 14

               
               
               Conread position:1-268
               
               
               Cow position:chr10:29777402-29777678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:30106639-30106357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):123, 5

               
               
               Conread position:1-268
               
               
               Cow position:chr10:30359957-30360239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):123, 71

               
               
               Conread position:1-268
               
               
               Cow position:chr10:30678387-30678103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr10:31201094-31200813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 83

               
               
               Conread position:1-268
               
               
               Cow position:chr10:31374677-31374397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 32

               
               
               Conread position:1-268
               
               
               Cow position:chr10:31534179-31534460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:32036784-32037067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:32282758-32283041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):119, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:32704505-32704788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:33665269-33665551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:34664037-34663754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr10:37041737-37042015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):112, 49

               
               
               Conread position:1-268
               
               
               Cow position:chr10:37125476-37125193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:37138561-37138279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:37634957-37635242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:211
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):80, 177

               
               
               Conread position:1-268
               
               
               Cow position:chr10:37908406-37908122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):18, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr10:37913725-37913467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):189, 37

               
               
               Conread position:1-268
               
               
               Cow position:chr10:39037311-39037029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr10:39257505-39257792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:39441906-39442193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr10:39535258-39535539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):123, 96

               
               
               Conread position:1-268
               
               
               Cow position:chr10:39778056-39777774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):160, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:39970711-39970428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):122, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr10:41161140-41161423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:1-268
               
               
               Cow position:chr10:41407724-41407996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 86

               
               
               Conread position:1-268
               
               
               Cow position:chr10:41626034-41626318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):129, 13

               
               
               Conread position:1-268
               
               
               Cow position:chr10:43610250-43610533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:43831584-43831301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):128, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:43863366-43863088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):178, 135

               
               
               Conread position:1-268
               
               
               Cow position:chr10:44765422-44765696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:207
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):189, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:45339124-45339407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):128, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:45340779-45341062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):128, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:45977823-45977540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:46378346-46378051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr10:46664347-46664630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:47158531-47158815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):13, 108

               
               
               Conread position:1-268
               
               
               Cow position:chr10:47910358-47910641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:48022191-48021908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:48098040-48098321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-268
               
               
               Cow position:chr10:48378204-48377923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:213
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):123, 60

               
               
               Conread position:1-268
               
               
               Cow position:chr10:50086976-50086693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:50110471-50110194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):123, 52

               
               
               Conread position:1-268
               
               
               Cow position:chr10:50452295-50452577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:50615753-50616036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:52028249-52028532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:52151948-52152232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:52782785-52782494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):58, 114

               
               
               Conread position:1-268
               
               
               Cow position:chr10:53828325-53828608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr10:54072047-54071767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):123, 103

               
               
               Conread position:1-268
               
               
               Cow position:chr10:55096799-55097082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:56106465-56106747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-268
               
               
               Cow position:chr10:56687138-56686847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:59246870-59247149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):75, 62

               
               
               Conread position:1-268
               
               
               Cow position:chr10:60366660-60366950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):79, 98

               
               
               Conread position:1-268
               
               
               Cow position:chr10:64347699-64347980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):123, 26

               
               
               Conread position:1-268
               
               
               Cow position:chr10:65810426-65810143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:213
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr10:66168159-66167876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr10:2612813-2613091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):123, 35

               
               
               Conread position:1-269
               
               
               Cow position:chr10:2974638-2974361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):124, 61

               
               
               Conread position:1-269
               
               
               Cow position:chr10:7328144-7328435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):122, 107

               
               
               Conread position:1-269
               
               
               Cow position:chr10:11221147-11221430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 62

               
               
               Conread position:1-269
               
               
               Cow position:chr10:12393168-12392887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:216
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr10:14639920-14639640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 123

               
               
               Conread position:1-269
               
               
               Cow position:chr10:16929955-16930236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):32, 39

               
               
               Conread position:1-269
               
               
               Cow position:chr10:20551958-20552242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr10:25005999-25006280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):126, 80

               
               
               Conread position:1-269
               
               
               Cow position:chr10:26621112-26620839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):197, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr10:31816277-31815995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):123, 48

               
               
               Conread position:1-269
               
               
               Cow position:chr10:34580576-34580294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:1-269
               
               
               Cow position:chr10:37599014-37599296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 18

               
               
               Conread position:1-269
               
               
               Cow position:chr10:37708784-37708505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr10:40376731-40376990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):71, 79

               
               
               Conread position:1-269
               
               
               Cow position:chr10:42230086-42230367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):35, 22

               
               
               Conread position:1-269
               
               
               Cow position:chr10:45769471-45769751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr10:47972353-47972069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr10:48594638-48594356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):129, 49

               
               
               Conread position:1-269
               
               
               Cow position:chr10:51559143-51559427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr10:58690357-58690632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:208
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):122, 181

               
               
               Conread position:1-269
               
               
               Cow position:chr10:59568281-59568555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):142, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr10:59849020-59849304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:1-269
               
               
               Cow position:chr10:65424479-65424201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr10:69935348-69935067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-270
               
               
               Cow position:chr10:6642304-6642576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):197, 96

               
               
               Conread position:1-270
               
               
               Cow position:chr10:15490570-15490855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-270
               
               
               Cow position:chr10:26005579-26005295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):82, 75

               
               
               Conread position:1-270
               
               
               Cow position:chr10:31005620-31005329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):16, 107

               
               
               Conread position:1-270
               
               
               Cow position:chr10:39810477-39810203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):160, 106

               
               
               Conread position:1-270
               
               
               Cow position:chr10:58265129-58264848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):89, 37

               
               
               Conread position:1-272
               
               
               Cow position:chr10:39648228-39647941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-273
               
               
               Cow position:chr10:10148058-10148344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):33, 79

               
               
               Conread position:1-274
               
               
               Cow position:chr10:47582422-47582715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-276
               
               
               Cow position:chr10:38941863-38942154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-277
               
               
               Cow position:chr10:26608534-26608242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-277
               
               
               Cow position:chr10:46195226-46195516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):123, 54

               
               
               Conread position:1-277
               
               
               Cow position:chr10:69998855-69998573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-283
               
               
               Cow position:chr10:50608980-50609282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-284
               
               
               Cow position:chr10:4711060-4711358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):118, 106

               
               
               Conread position:1-284
               
               
               Cow position:chr10:24308466-24308168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:1-284
               
               
               Cow position:chr10:62405053-62404754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-285
               
               
               Cow position:chr10:55022764-55023062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 35

               
               
               Conread position:1-287
               
               
               Cow position:chr10:47650541-47650840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-287
               
               
               Cow position:chr10:60237692-60237396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:213
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):123, 218

               
               
               Conread position:1-289
               
               
               Cow position:chr10:28933176-28933457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-291
               
               
               Cow position:chr10:47773163-47773470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:226
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:1-292
               
               
               Cow position:chr10:35732103-35731797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):81, 62

               
               
               Conread position:1-295
               
               
               Cow position:chr10:40148209-40147904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 106

               
               
               Conread position:1-297
               
               
               Cow position:chr10:2516774-2517084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:221
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):70, 107

               
               
               Conread position:1-299
               
               
               Cow position:chr10:34299913-34300224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:226
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):122, 73

               
               
               Conread position:1-305
               
               
               Cow position:chr10:22565498-22565170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:225
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):32, 311

               
               
               Conread position:1-305
               
               
               Cow position:chr10:30370769-30370452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):119, 56

               
               
               Conread position:1-306
               
               
               Cow position:chr10:9798775-9798471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):119, 66

               
               
               Conread position:1-306
               
               
               Cow position:chr10:40106546-40106866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 14

               
               
               Conread position:2-188
               
               
               Cow position:chr10:35887974-35887790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:2-248
               
               
               Cow position:chr10:1423273-1423011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:197
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:2-258
               
               
               Cow position:chr10:32833763-32834040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):34, 5

               
               
               Conread position:2-263
               
               
               Cow position:chr10:65000916-65000645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):48, 26

               
               
               Conread position:2-268
               
               
               Cow position:chr10:18041606-18041889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 105

               
               
               Conread position:2-268
               
               
               Cow position:chr10:31466181-31466453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):123, 47

               
               
               Conread position:2-268
               
               
               Cow position:chr10:52278157-52278430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):122, 62

               
               
               Conread position:2-269
               
               
               Cow position:chr10:29590160-29589876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 105

               
               
               Conread position:2-269
               
               
               Cow position:chr10:57458161-57458429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):121, 74

               
               
               Conread position:3-258
               
               
               Cow position:chr10:34660784-34660513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):121, 25

               
               
               Conread position:3-264
               
               
               Cow position:chr10:58607527-58607806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):120, 36

               
               
               Conread position:3-265
               
               
               Cow position:chr10:29816017-29816294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):121, 105

               
               
               Conread position:3-268
               
               
               Cow position:chr10:10859802-10859521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):121, 111

               
               
               Conread position:3-268
               
               
               Cow position:chr10:19504041-19503764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):121, 93

               
               
               Conread position:3-268
               
               
               Cow position:chr10:39139406-39139686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:209
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):121, 25

               
               
               Conread position:3-268
               
               
               Cow position:chr10:44202968-44202688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):121, 111

               
               
               Conread position:3-268
               
               
               Cow position:chr10:44774643-44774930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):112, 86

               
               
               Conread position:3-295
               
               
               Cow position:chr10:40737437-40737742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):121, 36

               
               
               Conread position:4-265
               
               
               Cow position:chr10:17653483-17653203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):69, 24

               
               
               Conread position:4-268
               
               
               Cow position:chr10:6557226-6557508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:4-268
               
               
               Cow position:chr10:30281622-30281901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:210
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):52, 29

               
               
               Conread position:4-268
               
               
               Cow position:chr10:50776131-50776413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):120, 77

               
               
               Conread position:4-269
               
               
               Cow position:chr10:32093224-32093499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):120, 59

               
               
               Conread position:5-188
               
               
               Cow position:chr10:54730459-54730639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:5-306
               
               
               Cow position:chr10:41255470-41255166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):47, 188

               
               
               Conread position:6-265
               
               
               Cow position:chr10:10134409-10134683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):118, 17

               
               
               Conread position:6-268
               
               
               Cow position:chr10:14177588-14177866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:6-268
               
               
               Cow position:chr10:41233638-41233896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):118, 78

               
               
               Conread position:6-272
               
               
               Cow position:chr10:34662903-34662613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):62, 281

               
               
               Conread position:7-268
               
               
               Cow position:chr10:22320967-22321236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):177, 100

               
               
               Conread position:7-269
               
               
               Cow position:chr10:18672454-18672732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):123, 100

               
               
               Conread position:7-269
               
               
               Cow position:chr10:37529852-37529569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):26, 104

               
               
               Conread position:8-272
               
               
               Cow position:chr10:33215233-33215510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):116, 42

               
               
               Conread position:9-268
               
               
               Cow position:chr10:21490677-21490950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):113, 127

               
               
               Conread position:10-270
               
               
               Cow position:chr10:6253054-6252773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):113, 97

               
               
               Conread position:11-265
               
               
               Cow position:chr10:33260347-33260079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):57, 8

               
               
               Conread position:14-268
               
               
               Cow position:chr10:46289745-46289478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):110, 29

               
               
               Conread position:15-268
               
               
               Cow position:chr10:6654697-6654965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):96, 160

               
               
               Conread position:16-188
               
               
               Cow position:chr10:44756955-44757131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:18-265
               
               
               Cow position:chr10:6719344-6719607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):18, 89

               
               
               Conread position:18-268
               
               
               Cow position:chr10:20095221-20095465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):166, 33

               
               
               Conread position:18-268
               
               
               Cow position:chr10:44680963-44681226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:197
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):106, 89

               
               
               Conread position:19-268
               
               
               Cow position:chr10:13050844-13050579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):49, 89

               
               
               Conread position:20-268
               
               
               Cow position:chr10:53058233-53057964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):25, 16

               
               
               Conread position:22-188
               
               
               Cow position:chr10:13391841-13391673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):102, 85

               
               
               Conread position:22-267
               
               
               Cow position:chr10:9526629-9526369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):14, 75

               
               
               Conread position:23-268
               
               
               Cow position:chr10:9082751-9083008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):13, 94

               
               
               Conread position:23-303
               
               
               Cow position:chr10:15292684-15292985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):25, 85

               
               
               Conread position:28-188
               
               
               Cow position:chr10:44817176-44817330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:28-264
               
               
               Cow position:chr10:43487170-43487419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):170, 80

               
               
               Conread position:28-265
               
               
               Cow position:chr10:22390051-22390303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):96, 78

               
               
               Conread position:28-265
               
               
               Cow position:chr10:30224137-30224389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):94, 48

               
               
               Conread position:28-306
               
               
               Cow position:chr10:53248589-53248286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):89, 79

               
               
               Conread position:29-268
               
               
               Cow position:chr10:48510830-48510575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):95, 78

               
               
               Conread position:32-290
               
               
               Cow position:chr10:53336944-53336675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):90, 229

               
               
               Conread position:34-263
               
               
               Cow position:chr10:22429502-22429256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):6, 74

               
               
               Conread position:34-281
               
               
               Cow position:chr10:48462881-48462619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):90, 73

               
               
               Conread position:35-268
               
               
               Cow position:chr10:30366500-30366749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):89, 72

               
               
               Conread position:35-269
               
               
               Cow position:chr10:53973321-53973559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):155, 72

               
               
               Conread position:35-306
               
               
               Cow position:chr10:15461923-15462220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):89, 72

               
               
               Conread position:37-265
               
               
               Cow position:chr10:35785070-35785314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):87, 225

               
               
               Conread position:37-269
               
               
               Cow position:chr10:6529664-6529911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):88, 61

               
               
               Conread position:38-249
               
               
               Cow position:chr10:22509718-22509492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):85, 11

               
               
               Conread position:38-304
               
               
               Cow position:chr10:41139339-41139056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):86, 38

               
               
               Conread position:40-268
               
               
               Cow position:chr10:4586894-4586655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):40, 34

               
               
               Conread position:41-265
               
               
               Cow position:chr10:19330496-19330256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):70, 134

               
               
               Conread position:41-268
               
               
               Cow position:chr10:324992-324749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:41-268
               
               
               Cow position:chr10:2736777-2737019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:41-270
               
               
               Cow position:chr10:58601971-58602215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):83, 66

               
               
               Conread position:41-274
               
               
               Cow position:chr10:32602695-32602941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:42-269
               
               
               Cow position:chr10:29339927-29339681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):82, 38

               
               
               Conread position:43-265
               
               
               Cow position:chr10:39774563-39774324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:45-188
               
               
               Cow position:chr10:44767492-44767345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:45-268
               
               
               Cow position:chr10:52977848-52978087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:45-268
               
               
               Cow position:chr10:57553079-57552842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):79, 5

               
               
               Conread position:45-283
               
               
               Cow position:chr10:56094706-56094958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):79, 36

               
               
               Conread position:47-265
               
               
               Cow position:chr10:19093690-19093927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):77, 60

               
               
               Conread position:48-208
               
               
               Cow position:chr10:29569790-29569631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):76, 28

               
               
               Conread position:52-270
               
               
               Cow position:chr10:33220266-33220032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):72, 55

               
               
               Conread position:52-283
               
               
               Cow position:chr10:29322361-29322610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):31, 24

               
               
               Conread position:53-268
               
               
               Cow position:chr10:15927128-15926896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):71, 54

               
               
               Conread position:53-302
               
               
               Cow position:chr10:15318134-15318400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):27, 55

               
               
               Conread position:54-268
               
               
               Cow position:chr10:10802761-10802529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:55-269
               
               
               Cow position:chr10:30243185-30243416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:58-268
               
               
               Cow position:chr10:63496431-63496206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):66, 49

               
               
               Conread position:59-269
               
               
               Cow position:chr10:24744608-24744836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):65, 45

               
               
               Conread position:60-269
               
               
               Cow position:chr10:46719828-46719604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):63, 16

               
               
               Conread position:61-187
               
               
               Cow position:chr10:13367829-13367957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):63, 46

               
               
               Conread position:71-277
               
               
               Cow position:chr10:57016642-57016420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):53, 36

               
               
               Conread position:77-265
               
               
               Cow position:chr10:22617141-22616937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):31, 84

               
               
               Conread position:78-269
               
               
               Cow position:chr10:9576544-9576348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):46, 30

               
               
               Conread position:84-270
               
               
               Cow position:chr10:26577059-26577261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):40, 23

               
               
               Conread position:94-282
               
               
               Cow position:chr10:15112197-15111994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):31, 16

               
               
               Conread position:95-269
               
               
               Cow position:chr10:28105529-28105351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):32, 12

               
               
               Conread position:97-268
               
               
               Cow position:chr10:22567915-22567728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):27, 76

               
               
               Conread position:1-122
               
               
               Cow position:chr11:31236024-31235903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-141
               
               
               Cow position:chr11:48484697-48484554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:1-142
               
               
               Cow position:chr11:10622010-10621866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):67, 107

               
               
               Conread position:1-157
               
               
               Cow position:chr11:21820024-21819868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):82, 75

               
               
               Conread position:1-164
               
               
               Cow position:chr11:68547211-68547377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:1-181
               
               
               Cow position:chr11:24601385-24601567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):122, 175

               
               
               Conread position:1-184
               
               
               Cow position:chr11:14469882-14470066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):50, 27

               
               
               Conread position:1-186
               
               
               Cow position:chr11:35556241-35556426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-186
               
               
               Cow position:chr11:51755424-51755609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-186
               
               
               Cow position:chr11:69074748-69074930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):35, 98

               
               
               Conread position:1-187
               
               
               Cow position:chr11:87154520-87154331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:152
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-188
               
               
               Cow position:chr11:41599312-41599118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:1-188
               
               
               Cow position:chr11:55014572-55014384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):123, 9

               
               
               Conread position:1-188
               
               
               Cow position:chr11:80761919-80761730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-188
               
               
               Cow position:chr11:83323033-83323221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-189
               
               
               Cow position:chr11:38070828-38071015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):127, 29

               
               
               Conread position:1-192
               
               
               Cow position:chr11:83044169-83043983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):124, 27

               
               
               Conread position:1-211
               
               
               Cow position:chr11:44488381-44488600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-211
               
               
               Cow position:chr11:70601903-70601685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):119, 71

               
               
               Conread position:1-212
               
               
               Cow position:chr11:38235399-38235186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):102, 63

               
               
               Conread position:1-244
               
               
               Cow position:chr11:11592362-11592627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):34, 27

               
               
               Conread position:1-251
               
               
               Cow position:chr11:34962405-34962664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):94, 114

               
               
               Conread position:1-258
               
               
               Cow position:chr11:9222306-9222042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):139, 106

               
               
               Conread position:1-258
               
               
               Cow position:chr11:16795715-16795443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-258
               
               
               Cow position:chr11:19787581-19787853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-261
               
               
               Cow position:chr11:77705200-77705472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):186, 124

               
               
               Conread position:1-262
               
               
               Cow position:chr11:5569065-5568793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):123, 26

               
               
               Conread position:1-262
               
               
               Cow position:chr11:26118618-26118353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):123, 35

               
               
               Conread position:1-262
               
               
               Cow position:chr11:32067589-32067322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):181, 18

               
               
               Conread position:1-262
               
               
               Cow position:chr11:41577574-41577296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:1-263
               
               
               Cow position:chr11:2057161-2057439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):129, 75

               
               
               Conread position:1-263
               
               
               Cow position:chr11:4384061-4384335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:212
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):67, 107

               
               
               Conread position:1-263
               
               
               Cow position:chr11:27923217-27923495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):122, 95

               
               
               Conread position:1-264
               
               
               Cow position:chr11:18509577-18509298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr11:31866030-31866310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):42, 110

               
               
               Conread position:1-264
               
               
               Cow position:chr11:35737979-35737702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):112, 62

               
               
               Conread position:1-265
               
               
               Cow position:chr11:3393778-3393498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:208
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr11:5482065-5481786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:209
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr11:6153850-6154125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):61, 89

               
               
               Conread position:1-265
               
               
               Cow position:chr11:7705052-7705333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):123, 52

               
               
               Conread position:1-265
               
               
               Cow position:chr11:9654114-9653837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:206
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr11:17228214-17227949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):123, 77

               
               
               Conread position:1-265
               
               
               Cow position:chr11:17980842-17981120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):110, 49

               
               
               Conread position:1-265
               
               
               Cow position:chr11:21832535-21832254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:210
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):72, 107

               
               
               Conread position:1-265
               
               
               Cow position:chr11:25336514-25336783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):190, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr11:26121560-26121280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:210
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr11:33601258-33600976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1-265
               
               
               Cow position:chr11:40133419-40133139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):123, 35

               
               
               Conread position:1-265
               
               
               Cow position:chr11:49099267-49098989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):123, 32

               
               
               Conread position:1-265
               
               
               Cow position:chr11:49171123-49170848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):62, 27

               
               
               Conread position:1-265
               
               
               Cow position:chr11:53773047-53773326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-265
               
               
               Cow position:chr11:56463742-56464024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-265
               
               
               Cow position:chr11:58399700-58399981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):75, 108

               
               
               Conread position:1-265
               
               
               Cow position:chr11:66943528-66943246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:211
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):114, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr11:70639200-70639472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):94, 28

               
               
               Conread position:1-267
               
               
               Cow position:chr11:10149973-10149692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):123, 17

               
               
               Conread position:1-267
               
               
               Cow position:chr11:62376995-62376723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):123, 22

               
               
               Conread position:1-268
               
               
               Cow position:chr11:1486437-1486154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 15

               
               
               Conread position:1-268
               
               
               Cow position:chr11:2421848-2422131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:2772719-2773000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):129, 6

               
               
               Conread position:1-268
               
               
               Cow position:chr11:3238683-3238964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-268
               
               
               Cow position:chr11:5273194-5272911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:7719129-7718846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr11:7873592-7873876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:8212208-8212490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):99, 37

               
               
               Conread position:1-268
               
               
               Cow position:chr11:8366941-8367222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:8495481-8495752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):189, 41

               
               
               Conread position:1-268
               
               
               Cow position:chr11:8563721-8563435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr11:8713699-8713978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):123, 71

               
               
               Conread position:1-268
               
               
               Cow position:chr11:10043625-10043908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr11:10076206-10076489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:10094785-10095057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 38

               
               
               Conread position:1-268
               
               
               Cow position:chr11:10851495-10851778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-268
               
               
               Cow position:chr11:10949040-10948758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:214
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:11315448-11315165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:11991380-11991660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:210
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):130, 16

               
               
               Conread position:1-268
               
               
               Cow position:chr11:12353511-12353229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):82, 75

               
               
               Conread position:1-268
               
               
               Cow position:chr11:13015446-13015163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:13087286-13087005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:13224596-13224873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 49

               
               
               Conread position:1-268
               
               
               Cow position:chr11:14426226-14425936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):122, 158

               
               
               Conread position:1-268
               
               
               Cow position:chr11:15047838-15048121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:15373069-15373352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 97

               
               
               Conread position:1-268
               
               
               Cow position:chr11:15495769-15496051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):123, 38

               
               
               Conread position:1-268
               
               
               Cow position:chr11:15501345-15501057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:216
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):34, 78

               
               
               Conread position:1-268
               
               
               Cow position:chr11:15695382-15695103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):122, 77

               
               
               Conread position:1-268
               
               
               Cow position:chr11:15836294-15836550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):178, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr11:17078346-17078629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:17549539-17549822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:17890291-17890008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):75, 108

               
               
               Conread position:1-268
               
               
               Cow position:chr11:18537819-18537536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:20730842-20730563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):123, 90

               
               
               Conread position:1-268
               
               
               Cow position:chr11:22103194-22103477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:22843306-22843023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:23883712-23883994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 75

               
               
               Conread position:1-268
               
               
               Cow position:chr11:25792261-25791978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:26067747-26067465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr11:26328043-26327766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr11:26550857-26551133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):110, 32

               
               
               Conread position:1-268
               
               
               Cow position:chr11:27724527-27724244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):83, 108

               
               
               Conread position:1-268
               
               
               Cow position:chr11:28620001-28620284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:30110389-30110668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:205
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):124, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:30164931-30165215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:32076706-32076427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):187, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:32455435-32455714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):129, 46

               
               
               Conread position:1-268
               
               
               Cow position:chr11:32763126-32763409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:32973923-32974214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):35, 114

               
               
               Conread position:1-268
               
               
               Cow position:chr11:33012324-33012605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:33147065-33146782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:33192885-33192601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):123, 175

               
               
               Conread position:1-268
               
               
               Cow position:chr11:33350269-33349987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:211
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):39, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr11:33687107-33686832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):123, 32

               
               
               Conread position:1-268
               
               
               Cow position:chr11:34841767-34841477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr11:35141955-35141672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:35362931-35363210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):123, 54

               
               
               Conread position:1-268
               
               
               Cow position:chr11:37068863-37068589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):121, 95

               
               
               Conread position:1-268
               
               
               Cow position:chr11:37278754-37278484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:37285264-37284980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):123, 152

               
               
               Conread position:1-268
               
               
               Cow position:chr11:38574104-38573821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:38599333-38599060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):123, 56

               
               
               Conread position:1-268
               
               
               Cow position:chr11:38819117-38818834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:38842996-38843278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):123, 55

               
               
               Conread position:1-268
               
               
               Cow position:chr11:39078680-39078396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr11:40300389-40300107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):126, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:40375520-40375237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:40402402-40402118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):54, 109

               
               
               Conread position:1-268
               
               
               Cow position:chr11:40772264-40771982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:41261549-41261832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr11:42373174-42373452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:43361358-43361086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:43509952-43509669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:44153702-44153419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:44255452-44255734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr11:44356507-44356237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:197
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:46142608-46142325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:46195002-46195285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:46780689-46780406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr11:47655176-47655456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:47676606-47676889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:49522373-49522657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr11:51028796-51029066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:52179696-52179979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):128, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:52380016-52379739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):123, 75

               
               
               Conread position:1-268
               
               
               Cow position:chr11:53428451-53428167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):123, 82

               
               
               Conread position:1-268
               
               
               Cow position:chr11:54179105-54178823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:214
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr11:54580252-54580534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:211
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:58049267-58048984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):106, 144

               
               
               Conread position:1-268
               
               
               Cow position:chr11:58140071-58140353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):82, 75

               
               
               Conread position:1-268
               
               
               Cow position:chr11:59942770-59943060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr11:60999160-60998876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:61397240-61396957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:214
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:62009420-62009137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:63390101-63389819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:63652268-63651985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr11:65670723-65671006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:66389634-66389351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:66664039-66663756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:66945215-66944927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):41, 91

               
               
               Conread position:1-268
               
               
               Cow position:chr11:68136574-68136857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:68571240-68570957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 97

               
               
               Conread position:1-268
               
               
               Cow position:chr11:71332880-71333160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):123, 96

               
               
               Conread position:1-268
               
               
               Cow position:chr11:72369432-72369715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr11:73137959-73138235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):123, 60

               
               
               Conread position:1-268
               
               
               Cow position:chr11:73798325-73798041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr11:74564433-74564150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-268
               
               
               Cow position:chr11:75195763-75195479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr11:75354759-75355041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):123, 40

               
               
               Conread position:1-268
               
               
               Cow position:chr11:75402147-75401868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):123, 48

               
               
               Conread position:1-268
               
               
               Cow position:chr11:77749651-77749925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):113, 174

               
               
               Conread position:1-268
               
               
               Cow position:chr11:79995374-79995105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr11:87147836-87147553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr11:5229649-5229365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr11:6877254-6877537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr11:9388715-9388999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:1-269
               
               
               Cow position:chr11:9432755-9433035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):126, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr11:14259584-14259300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):92, 100

               
               
               Conread position:1-269
               
               
               Cow position:chr11:20601694-20601955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):94, 115

               
               
               Conread position:1-269
               
               
               Cow position:chr11:22499948-22499666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):68, 49

               
               
               Conread position:1-269
               
               
               Cow position:chr11:38649015-38649294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):42, 107

               
               
               Conread position:1-269
               
               
               Cow position:chr11:41167313-41167029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):92, 174

               
               
               Conread position:1-269
               
               
               Cow position:chr11:42358562-42358840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):21, 28

               
               
               Conread position:1-269
               
               
               Cow position:chr11:44579853-44579573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):82, 75

               
               
               Conread position:1-269
               
               
               Cow position:chr11:56144773-56145057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1-269
               
               
               Cow position:chr11:58973408-58973123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):34, 107

               
               
               Conread position:1-269
               
               
               Cow position:chr11:71957498-71957214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr11:77759317-77759042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):197, 27

               
               
               Conread position:1-270
               
               
               Cow position:chr11:24032359-24032643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:211
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-270
               
               
               Cow position:chr11:37292289-37292573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):123, 11

               
               
               Conread position:1-270
               
               
               Cow position:chr11:67919961-67919677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-270
               
               
               Cow position:chr11:84774543-84774834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-272
               
               
               Cow position:chr11:13499452-13499733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-276
               
               
               Cow position:chr11:44818540-44818830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:214
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-277
               
               
               Cow position:chr11:83356827-83357120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):124, 106

               
               
               Conread position:1-279
               
               
               Cow position:chr11:18592333-18592041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:1-282
               
               
               Cow position:chr11:22593289-22593587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-284
               
               
               Cow position:chr11:39114934-39115227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:220
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):67, 37

               
               
               Conread position:1-292
               
               
               Cow position:chr11:41726161-41726474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):123, 75

               
               
               Conread position:1-292
               
               
               Cow position:chr11:66020195-66019891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):123, 48

               
               
               Conread position:1-293
               
               
               Cow position:chr11:48231876-48232178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):25, 36

               
               
               Conread position:1-297
               
               
               Cow position:chr11:10302773-10302464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-297
               
               
               Cow position:chr11:62225424-62225724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):134, 35

               
               
               Conread position:1-298
               
               
               Cow position:chr11:23138641-23138327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):123, 103

               
               
               Conread position:1-299
               
               
               Cow position:chr11:75510821-75510510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-300
               
               
               Cow position:chr11:56892209-56892522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):98, 116

               
               
               Conread position:1-303
               
               
               Cow position:chr11:38831983-38831666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:232
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):124, 106

               
               
               Conread position:1-303
               
               
               Cow position:chr11:42003566-42003249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):122, 60

               
               
               Conread position:1-304
               
               
               Cow position:chr11:70031030-70031346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-306
               
               
               Cow position:chr11:21983866-21984184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 85

               
               
               Conread position:1-306
               
               
               Cow position:chr11:63166757-63166432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):28, 110

               
               
               Conread position:1-306
               
               
               Cow position:chr11:67246242-67246556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):156, 46

               
               
               Conread position:2-255
               
               
               Cow position:chr11:56751947-56751673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:209
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-263
               
               
               Cow position:chr11:31884945-31885218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):40, 75

               
               
               Conread position:2-265
               
               
               Cow position:chr11:1380124-1380406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):31, 109

               
               
               Conread position:2-268
               
               
               Cow position:chr11:38220141-38220419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):122, 112

               
               
               Conread position:2-268
               
               
               Cow position:chr11:44512088-44511800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-268
               
               
               Cow position:chr11:68130768-68131051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-268
               
               
               Cow position:chr11:80591722-80592004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:3-188
               
               
               Cow position:chr11:62574618-62574431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):21, 104

               
               
               Conread position:3-265
               
               
               Cow position:chr11:378438-378165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):121, 107

               
               
               Conread position:3-265
               
               
               Cow position:chr11:50198000-50197733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):65, 117

               
               
               Conread position:3-268
               
               
               Cow position:chr11:10810638-10810357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:211
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-268
               
               
               Cow position:chr11:17104323-17104042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-268
               
               
               Cow position:chr11:27447576-27447857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-268
               
               
               Cow position:chr11:38641320-38641594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):124, 43

               
               
               Conread position:3-268
               
               
               Cow position:chr11:44031433-44031714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):120, 75

               
               
               Conread position:3-268
               
               
               Cow position:chr11:60515531-60515251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):120, 104

               
               
               Conread position:3-269
               
               
               Cow position:chr11:2568233-2568522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):62, 98

               
               
               Conread position:3-269
               
               
               Cow position:chr11:33526501-33526778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-269
               
               
               Cow position:chr11:38810888-38810621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):164, 104

               
               
               Conread position:3-276
               
               
               Cow position:chr11:32956453-32956191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:207
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):90, 130

               
               
               Conread position:3-276
               
               
               Cow position:chr11:32977643-32977374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):90, 131

               
               
               Conread position:3-305
               
               
               Cow position:chr11:62238919-62239218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):121, 73

               
               
               Conread position:4-268
               
               
               Cow position:chr11:74929212-74929495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):86, 106

               
               
               Conread position:5-298
               
               
               Cow position:chr11:38916732-38917041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):109, 102

               
               
               Conread position:6-268
               
               
               Cow position:chr11:64047758-64048035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:207
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):118, 44

               
               
               Conread position:6-270
               
               
               Cow position:chr11:1625780-1625502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):109, 85

               
               
               Conread position:7-258
               
               
               Cow position:chr11:42017187-42016931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):117, 100

               
               
               Conread position:7-267
               
               
               Cow position:chr11:55116910-55117186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):29, 101

               
               
               Conread position:7-269
               
               
               Cow position:chr11:57004265-57004539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):117, 30

               
               
               Conread position:8-189
               
               
               Cow position:chr11:30057624-30057808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):57, 100

               
               
               Conread position:9-258
               
               
               Cow position:chr11:70248286-70248553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):54, 100

               
               
               Conread position:9-268
               
               
               Cow position:chr11:67454327-67454602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):115, 99

               
               
               Conread position:10-265
               
               
               Cow position:chr11:15286182-15285906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):45, 102

               
               
               Conread position:10-268
               
               
               Cow position:chr11:10294043-10294312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):114, 25

               
               
               Conread position:10-268
               
               
               Cow position:chr11:17113186-17112912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):114, 97

               
               
               Conread position:11-268
               
               
               Cow position:chr11:21472883-21472612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):113, 96

               
               
               Conread position:15-164
               
               
               Cow position:chr11:3796597-3796750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):49, 15

               
               
               Conread position:15-187
               
               
               Cow position:chr11:456699-456521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:15-268
               
               
               Cow position:chr11:48692838-48693107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):108, 99

               
               
               Conread position:15-268
               
               
               Cow position:chr11:67746732-67746992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):106, 59

               
               
               Conread position:15-268
               
               
               Cow position:chr11:77011684-77011415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):109, 92

               
               
               Conread position:16-265
               
               
               Cow position:chr11:62151432-62151170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):82, 65

               
               
               Conread position:16-265
               
               
               Cow position:chr11:76114100-76114364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):109, 91

               
               
               Conread position:16-268
               
               
               Cow position:chr11:2337538-2337804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):93, 207

               
               
               Conread position:16-268
               
               
               Cow position:chr11:72016506-72016239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):108, 91

               
               
               Conread position:16-300
               
               
               Cow position:chr11:53690634-53690940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):75, 31

               
               
               Conread position:17-268
               
               
               Cow position:chr11:21620827-21621094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):107, 90

               
               
               Conread position:18-268
               
               
               Cow position:chr11:40467673-40467409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:199
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):106, 89

               
               
               Conread position:21-265
               
               
               Cow position:chr11:8841297-8841031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):103, 85

               
               
               Conread position:21-268
               
               
               Cow position:chr11:4731791-4732053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:23-298
               
               
               Cow position:chr11:30707953-30708237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):168, 22

               
               
               Conread position:27-186
               
               
               Cow position:chr11:81604914-81605075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):97, 80

               
               
               Conread position:28-265
               
               
               Cow position:chr11:47662191-47662436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):96, 79

               
               
               Conread position:28-268
               
               
               Cow position:chr11:37562943-37563176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):95, 49

               
               
               Conread position:29-268
               
               
               Cow position:chr11:56854334-56854588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):95, 47

               
               
               Conread position:30-268
               
               
               Cow position:chr11:29916009-29916263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):94, 77

               
               
               Conread position:30-268
               
               
               Cow position:chr11:54856098-54856349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):94, 74

               
               
               Conread position:33-268
               
               
               Cow position:chr11:46328968-46329214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):51, 43

               
               
               Conread position:34-210
               
               
               Cow position:chr11:4266541-4266361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):154, 73

               
               
               Conread position:34-268
               
               
               Cow position:chr11:44233841-44234072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):164, 64

               
               
               Conread position:35-268
               
               
               Cow position:chr11:5279081-5278831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):89, 72

               
               
               Conread position:35-293
               
               
               Cow position:chr11:23129080-23128813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):155, 63

               
               
               Conread position:35-294
               
               
               Cow position:chr11:55761253-55761531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):24, 66

               
               
               Conread position:35-299
               
               
               Cow position:chr11:27462942-27462667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):89, 72

               
               
               Conread position:37-265
               
               
               Cow position:chr11:48271667-48271907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:183
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:38-268
               
               
               Cow position:chr11:16900750-16900979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):133, 69

               
               
               Conread position:38-268
               
               
               Cow position:chr11:58947717-58947479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):92, 69

               
               
               Conread position:41-251
               
               
               Cow position:chr11:66903382-66903163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):83, 66

               
               
               Conread position:41-263
               
               
               Cow position:chr11:81602978-81603222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):83, 66

               
               
               Conread position:41-268
               
               
               Cow position:chr11:19216471-19216228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):83, 66

               
               
               Conread position:42-268
               
               
               Cow position:chr11:49439330-49439570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):82, 65

               
               
               Conread position:44-268
               
               
               Cow position:chr11:19890359-19890597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):80, 63

               
               
               Conread position:44-273
               
               
               Cow position:chr11:42793484-42793240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):80, 63

               
               
               Conread position:46-268
               
               
               Cow position:chr11:33413719-33413948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):78, 61

               
               
               Conread position:46-268
               
               
               Cow position:chr11:64334333-64334572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):34, 63

               
               
               Conread position:46-269
               
               
               Cow position:chr11:63469364-63469601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):77, 61

               
               
               Conread position:47-256
               
               
               Cow position:chr11:39152165-39152390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):77, 60

               
               
               Conread position:47-268
               
               
               Cow position:chr11:21856438-21856674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):77, 51

               
               
               Conread position:47-289
               
               
               Cow position:chr11:15999867-16000129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):76, 111

               
               
               Conread position:49-258
               
               
               Cow position:chr11:34412580-34412804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):75, 30

               
               
               Conread position:50-268
               
               
               Cow position:chr11:81301200-81300967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:52-284
               
               
               Cow position:chr11:41177150-41176904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):72, 55

               
               
               Conread position:52-289
               
               
               Cow position:chr11:50777792-50778046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):72, 55

               
               
               Conread position:54-289
               
               
               Cow position:chr11:4067915-4068159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):70, 50

               
               
               Conread position:55-269
               
               
               Cow position:chr11:17969090-17968860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):69, 52

               
               
               Conread position:55-301
               
               
               Cow position:chr11:8246607-8246880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:56-272
               
               
               Cow position:chr11:62215991-62215757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):67, 158

               
               
               Conread position:61-256
               
               
               Cow position:chr11:59902389-59902596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):19, 47

               
               
               Conread position:63-267
               
               
               Cow position:chr11:49211328-49211119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):61, 152

               
               
               Conread position:64-268
               
               
               Cow position:chr11:27325984-27326199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):60, 46

               
               
               Conread position:67-269
               
               
               Cow position:chr11:54105014-54104797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):57, 40

               
               
               Conread position:78-268
               
               
               Cow position:chr11:77751259-77751051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:81-264
               
               
               Cow position:chr11:62978989-62979188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 26

               
               
               Conread position:81-268
               
               
               Cow position:chr11:6644735-6644935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 27

               
               
               Conread position:101-268
               
               
               Cow position:chr11:33001533-33001714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:1-172
               
               
               Cow position:chr12:4003969-4003796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-176
               
               
               Cow position:chr12:7651176-7650998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):91, 107

               
               
               Conread position:1-178
               
               
               Cow position:chr12:44689672-44689494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):106, 174

               
               
               Conread position:1-187
               
               
               Cow position:chr12:735473-735285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-188
               
               
               Cow position:chr12:3093720-3093538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):32, 132

               
               
               Conread position:1-188
               
               
               Cow position:chr12:36568633-36568446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):123, 35

               
               
               Conread position:1-188
               
               
               Cow position:chr12:42185618-42185806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):123, 49

               
               
               Conread position:1-188
               
               
               Cow position:chr12:43783690-43783501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):124, 106

               
               
               Conread position:1-189
               
               
               Cow position:chr12:41737080-41736891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):55, 107

               
               
               Conread position:1-190
               
               
               Cow position:chr12:22286271-22286079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):107, 71

               
               
               Conread position:1-191
               
               
               Cow position:chr12:21905033-21905227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-205
               
               
               Cow position:chr12:18587879-18588084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-257
               
               
               Cow position:chr12:15938836-15938580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 48

               
               
               Conread position:1-257
               
               
               Cow position:chr12:18010846-18011121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:1-258
               
               
               Cow position:chr12:3600464-3600208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):113, 106

               
               
               Conread position:1-258
               
               
               Cow position:chr12:21045637-21045370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-258
               
               
               Cow position:chr12:27176242-27175970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):114, 106

               
               
               Conread position:1-258
               
               
               Cow position:chr12:27192767-27193039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):114, 106

               
               
               Conread position:1-259
               
               
               Cow position:chr12:37697812-37697539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:203
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):122, 22

               
               
               Conread position:1-260
               
               
               Cow position:chr12:4593507-4593782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-261
               
               
               Cow position:chr12:2967585-2967861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-262
               
               
               Cow position:chr12:759061-759338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):126, 105

               
               
               Conread position:1-262
               
               
               Cow position:chr12:16738018-16738280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:1-263
               
               
               Cow position:chr12:8841377-8841098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:1-263
               
               
               Cow position:chr12:12754213-12753935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-263
               
               
               Cow position:chr12:25096637-25096359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-263
               
               
               Cow position:chr12:40910868-40910600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:1-264
               
               
               Cow position:chr12:11101912-11102191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr12:19715940-19715668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):19, 71

               
               
               Conread position:1-265
               
               
               Cow position:chr12:550949-550669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr12:3181073-3181352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:1-265
               
               
               Cow position:chr12:3545316-3545596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr12:3950921-3950643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:205
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):120, 35

               
               
               Conread position:1-265
               
               
               Cow position:chr12:5146232-5146527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):109, 52

               
               
               Conread position:1-265
               
               
               Cow position:chr12:5800444-5800730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:216
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr12:6186487-6186209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):124, 27

               
               
               Conread position:1-265
               
               
               Cow position:chr12:10490724-10491002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):122, 89

               
               
               Conread position:1-265
               
               
               Cow position:chr12:16961015-16961290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):12, 23

               
               
               Conread position:1-265
               
               
               Cow position:chr12:19865655-19865934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):123, 64

               
               
               Conread position:1-265
               
               
               Cow position:chr12:20169963-20169692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):123, 42

               
               
               Conread position:1-265
               
               
               Cow position:chr12:22202017-22201736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:208
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-265
               
               
               Cow position:chr12:22594415-22594692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):83, 22

               
               
               Conread position:1-265
               
               
               Cow position:chr12:24755611-24755332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):123, 95

               
               
               Conread position:1-265
               
               
               Cow position:chr12:25260088-25259809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-265
               
               
               Cow position:chr12:31217844-31218133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):64, 109

               
               
               Conread position:1-265
               
               
               Cow position:chr12:37843592-37843314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:205
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):110, 276

               
               
               Conread position:1-265
               
               
               Cow position:chr12:38784534-38784818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:1-265
               
               
               Cow position:chr12:40867997-40868276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr12:249658-249374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):37, 86

               
               
               Conread position:1-268
               
               
               Cow position:chr12:379141-379425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr12:464946-464663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr12:1007680-1007962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):126, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr12:1476079-1475800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):123, 21

               
               
               Conread position:1-268
               
               
               Cow position:chr12:2242476-2242194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-268
               
               
               Cow position:chr12:3372118-3372388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr12:5110406-5110125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):123, 75

               
               
               Conread position:1-268
               
               
               Cow position:chr12:5148995-5149278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr12:5273707-5273424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr12:5327558-5327276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr12:6105672-6105390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr12:6404123-6403836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr12:7127228-7127507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr12:8542215-8541932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):125, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr12:8656222-8656505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr12:9106861-9107144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr12:9142806-9143087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr12:9988036-9987756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):187, 120

               
               
               Conread position:1-268
               
               
               Cow position:chr12:10076322-10076614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr12:10227405-10227688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr12:10359358-10359643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):108, 176

               
               
               Conread position:1-268
               
               
               Cow position:chr12:10931747-10932034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:215
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):75, 164

               
               
               Conread position:1-268
               
               
               Cow position:chr12:11582813-11583101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr12:14940629-14940920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):84, 114

               
               
               Conread position:1-268
               
               
               Cow position:chr12:15719906-15719625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:209
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr12:17718960-17719243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr12:17982047-17982326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):53, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr12:18055921-18055647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr12:18724415-18724698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr12:19198703-19198983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):189, 95

               
               
               Conread position:1-268
               
               
               Cow position:chr12:20317092-20316811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):123, 35

               
               
               Conread position:1-268
               
               
               Cow position:chr12:21665802-21666085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr12:22340734-22341017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr12:22517185-22516903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):122, 73

               
               
               Conread position:1-268
               
               
               Cow position:chr12:22748880-22749153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:209
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):178, 63

               
               
               Conread position:1-268
               
               
               Cow position:chr12:23210310-23210589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr12:24028819-24028534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr12:25147954-25147673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):123, 76

               
               
               Conread position:1-268
               
               
               Cow position:chr12:25435220-25435503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):123, 66

               
               
               Conread position:1-268
               
               
               Cow position:chr12:25575267-25574984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr12:26223707-26223445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):126, 72

               
               
               Conread position:1-268
               
               
               Cow position:chr12:26672575-26672854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:205
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr12:27455161-27454878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):129, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr12:27505986-27505703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr12:27851990-27851707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr12:27929062-27928779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr12:28188177-28187894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr12:28707961-28707680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):123, 75

               
               
               Conread position:1-268
               
               
               Cow position:chr12:28763351-28763070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):123, 69

               
               
               Conread position:1-268
               
               
               Cow position:chr12:29486528-29486812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):123, 95

               
               
               Conread position:1-268
               
               
               Cow position:chr12:30579046-30578764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):123, 9

               
               
               Conread position:1-268
               
               
               Cow position:chr12:30593446-30593163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr12:32340456-32340739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr12:32758358-32758641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr12:32917991-32918274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr12:33926557-33926840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr12:34673912-34673634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr12:36287347-36287064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr12:36446049-36446330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr12:37562664-37562948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):123, 175

               
               
               Conread position:1-268
               
               
               Cow position:chr12:39158879-39158595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):34, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr12:41183802-41184084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr12:41337565-41337282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr12:42855889-42855607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):112, 173

               
               
               Conread position:1-268
               
               
               Cow position:chr12:46129433-46129716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr12:47415465-47415743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):112, 75

               
               
               Conread position:1-269
               
               
               Cow position:chr12:3038929-3039210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):123, 80

               
               
               Conread position:1-269
               
               
               Cow position:chr12:20213680-20213959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):155, 0

               
               
               Conread position:1-270
               
               
               Cow position:chr12:19155191-19154912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):121, 35

               
               
               Conread position:1-270
               
               
               Cow position:chr12:19696818-19697109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:212
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):124, 106

               
               
               Conread position:1-270
               
               
               Cow position:chr12:25821301-25821020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):123, 90

               
               
               Conread position:1-270
               
               
               Cow position:chr12:35368041-35368334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-277
               
               
               Cow position:chr12:5905189-5905480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-277
               
               
               Cow position:chr12:23475412-23475705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):123, 10

               
               
               Conread position:1-284
               
               
               Cow position:chr12:1093756-1094053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-284
               
               
               Cow position:chr12:23445845-23446143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:221
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):109, 147

               
               
               Conread position:1-296
               
               
               Cow position:chr12:2234484-2234171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):79, 73

               
               
               Conread position:1-299
               
               
               Cow position:chr12:31742355-31742042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:226
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):17, 107

               
               
               Conread position:1-303
               
               
               Cow position:chr12:29412189-29411872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):112, 40

               
               
               Conread position:1-305
               
               
               Cow position:chr12:23039579-23039260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:228
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 255

               
               
               Conread position:1-306
               
               
               Cow position:chr12:30687735-30688046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:210
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:2-247
               
               
               Cow position:chr12:32786573-32786309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):122, 104

               
               
               Conread position:2-264
               
               
               Cow position:chr12:19040204-19039926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-265
               
               
               Cow position:chr12:17079678-17079953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):121, 39

               
               
               Conread position:2-268
               
               
               Cow position:chr12:1774242-1773968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):186, 106

               
               
               Conread position:2-268
               
               
               Cow position:chr12:13042575-13042293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-268
               
               
               Cow position:chr12:24440225-24440507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-268
               
               
               Cow position:chr12:28572121-28572398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:208
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):122, 54

               
               
               Conread position:2-268
               
               
               Cow position:chr12:31328665-31328383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-268
               
               
               Cow position:chr12:37122929-37123208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:2-268
               
               
               Cow position:chr12:40270943-40270661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):122, 51

               
               
               Conread position:3-122
               
               
               Cow position:chr12:21828481-21828600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-179
               
               
               Cow position:chr12:45802403-45802224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):91, 35

               
               
               Conread position:3-188
               
               
               Cow position:chr12:17031025-17031207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):81, 71

               
               
               Conread position:3-262
               
               
               Cow position:chr12:11835655-11835936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):117, 105

               
               
               Conread position:3-270
               
               
               Cow position:chr12:8523447-8523732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:3-284
               
               
               Cow position:chr12:35755228-35754931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):110, 104

               
               
               Conread position:4-285
               
               
               Cow position:chr12:18553675-18553972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):120, 104

               
               
               Conread position:6-265
               
               
               Cow position:chr12:3070529-3070802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):64, 32

               
               
               Conread position:6-268
               
               
               Cow position:chr12:36118389-36118666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):118, 102

               
               
               Conread position:7-177
               
               
               Cow position:chr12:4377987-4377817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):18, 101

               
               
               Conread position:7-303
               
               
               Cow position:chr12:28650331-28650652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:7-305
               
               
               Cow position:chr12:24090128-24089821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:216
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):117, 21

               
               
               Conread position:9-268
               
               
               Cow position:chr12:20993955-20993681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):112, 98

               
               
               Conread position:9-268
               
               
               Cow position:chr12:37770291-37770566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):115, 98

               
               
               Conread position:11-286
               
               
               Cow position:chr12:5829554-5829847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):114, 17

               
               
               Conread position:12-268
               
               
               Cow position:chr12:44176459-44176185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:14-268
               
               
               Cow position:chr12:471912-471641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):20, 94

               
               
               Conread position:15-198
               
               
               Cow position:chr12:15121525-15121709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):31, 13

               
               
               Conread position:15-268
               
               
               Cow position:chr12:18944227-18943955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):99, 92

               
               
               Conread position:16-290
               
               
               Cow position:chr12:41288982-41289257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):108, 73

               
               
               Conread position:18-284
               
               
               Cow position:chr12:31605493-31605213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):12, 23

               
               
               Conread position:26-256
               
               
               Cow position:chr12:16606341-16606095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):98, 81

               
               
               Conread position:26-267
               
               
               Cow position:chr12:15173253-15173513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:29-188
               
               
               Cow position:chr12:11108666-11108827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):94, 78

               
               
               Conread position:29-268
               
               
               Cow position:chr12:24469706-24469957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):95, 76

               
               
               Conread position:35-265
               
               
               Cow position:chr12:17486904-17486667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):155, 72

               
               
               Conread position:35-268
               
               
               Cow position:chr12:32041735-32041486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):89, 72

               
               
               Conread position:35-269
               
               
               Cow position:chr12:22046939-22047181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):89, 72

               
               
               Conread position:40-268
               
               
               Cow position:chr12:132051-132295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):84, 67

               
               
               Conread position:41-255
               
               
               Cow position:chr12:17472763-17472534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):83, 66

               
               
               Conread position:41-268
               
               
               Cow position:chr12:38111183-38111425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):83, 65

               
               
               Conread position:49-261
               
               
               Cow position:chr12:31947655-31947889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:49-270
               
               
               Cow position:chr12:19125362-19125128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):73, 58

               
               
               Conread position:52-293
               
               
               Cow position:chr12:10939079-10939332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):72, 56

               
               
               Conread position:54-306
               
               
               Cow position:chr12:37514764-37514494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):70, 54

               
               
               Conread position:58-268
               
               
               Cow position:chr12:23473540-23473314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):66, 49

               
               
               Conread position:65-268
               
               
               Cow position:chr12:40806873-40807091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):59, 41

               
               
               Conread position:72-268
               
               
               Cow position:chr12:27563900-27563682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):52, 35

               
               
               Conread position:78-265
               
               
               Cow position:chr12:9482788-9482603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):41, 13

               
               
               Conread position:110-303
               
               
               Cow position:chr12:11498573-11498363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:123-295
               
               
               Cow position:chr12:5707657-5707833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):90, 44

               
               
               Conread position:1-122
               
               
               Cow position:chr13:20465047-20465168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-142
               
               
               Cow position:chr13:27835802-27835943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):127, 106

               
               
               Conread position:1-164
               
               
               Cow position:chr13:37980150-37980315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-170
               
               
               Cow position:chr13:24237660-24237835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:1-172
               
               
               Cow position:chr13:46459190-46459016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):38, 27

               
               
               Conread position:1-184
               
               
               Cow position:chr13:47547210-47547391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):123, 32

               
               
               Conread position:1-186
               
               
               Cow position:chr13:4262448-4262261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-186
               
               
               Cow position:chr13:4264538-4264351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-186
               
               
               Cow position:chr13:27326132-27326320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:1-186
               
               
               Cow position:chr13:59170091-59169904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-188
               
               
               Cow position:chr13:2414559-2414370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:153
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-188
               
               
               Cow position:chr13:13261548-13261361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-188
               
               
               Cow position:chr13:19393788-19393599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-188
               
               
               Cow position:chr13:34112853-34112666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:152
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-188
               
               
               Cow position:chr13:46182306-46182119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):123, 22

               
               
               Conread position:1-188
               
               
               Cow position:chr13:57769490-57769679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-188
               
               
               Cow position:chr13:60508589-60508777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):123, 17

               
               
               Conread position:1-189
               
               
               Cow position:chr13:3650850-3650660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:1-196
               
               
               Cow position:chr13:54418942-54418753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):172, 106

               
               
               Conread position:1-211
               
               
               Cow position:chr13:14399619-14399401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):110, 172

               
               
               Conread position:1-248
               
               
               Cow position:chr13:45072890-45073149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):61, 15

               
               
               Conread position:1-257
               
               
               Cow position:chr13:54237860-54237608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):189, 75

               
               
               Conread position:1-258
               
               
               Cow position:chr13:12978089-12977821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-258
               
               
               Cow position:chr13:19882513-19882777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):187, 22

               
               
               Conread position:1-258
               
               
               Cow position:chr13:20571261-20570985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:207
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-258
               
               
               Cow position:chr13:26073466-26073191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-258
               
               
               Cow position:chr13:31580280-31580551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-258
               
               
               Cow position:chr13:34728311-34728578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):189, 106

               
               
               Conread position:1-260
               
               
               Cow position:chr13:1459004-1458742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:1-260
               
               
               Cow position:chr13:48627991-48628266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-261
               
               
               Cow position:chr13:15167352-15167075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-262
               
               
               Cow position:chr13:9803598-9803315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-263
               
               
               Cow position:chr13:19178816-19178530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-263
               
               
               Cow position:chr13:22774767-22775043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):105, 52

               
               
               Conread position:1-263
               
               
               Cow position:chr13:22780522-22780246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):123, 52

               
               
               Conread position:1-263
               
               
               Cow position:chr13:34345758-34346036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:207
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-263
               
               
               Cow position:chr13:38283445-38283727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:1-263
               
               
               Cow position:chr13:58742595-58742877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):35, 28

               
               
               Conread position:1-264
               
               
               Cow position:chr13:1155173-1155452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):61, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr13:15446581-15446302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):75, 110

               
               
               Conread position:1-264
               
               
               Cow position:chr13:40989617-40989334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:215
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):33, 83

               
               
               Conread position:1-265
               
               
               Cow position:chr13:609311-609587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):123, 10

               
               
               Conread position:1-265
               
               
               Cow position:chr13:9301840-9302120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr13:9537693-9537970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):32, 39

               
               
               Conread position:1-265
               
               
               Cow position:chr13:13222857-13222577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):79, 73

               
               
               Conread position:1-265
               
               
               Cow position:chr13:15622388-15622114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:207
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):187, 113

               
               
               Conread position:1-265
               
               
               Cow position:chr13:19022780-19022502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):135, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr13:20563524-20563253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:203
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):123, 60

               
               
               Conread position:1-265
               
               
               Cow position:chr13:25453699-25453425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):123, 52

               
               
               Conread position:1-265
               
               
               Cow position:chr13:26098677-26098397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr13:31814394-31814122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):189, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr13:32017021-32017268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):81, 75

               
               
               Conread position:1-265
               
               
               Cow position:chr13:32825878-32826152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):123, 51

               
               
               Conread position:1-265
               
               
               Cow position:chr13:34941124-34941402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):123, 47

               
               
               Conread position:1-265
               
               
               Cow position:chr13:43974502-43974222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):126, 174

               
               
               Conread position:1-265
               
               
               Cow position:chr13:44323513-44323234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-265
               
               
               Cow position:chr13:47318100-47317820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:1-265
               
               
               Cow position:chr13:47590607-47590886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):123, 57

               
               
               Conread position:1-265
               
               
               Cow position:chr13:48378057-48378317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):65, 32

               
               
               Conread position:1-268
               
               
               Cow position:chr13:560932-560649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr13:1590698-1590414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):129, 175

               
               
               Conread position:1-268
               
               
               Cow position:chr13:1636868-1637151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr13:2465898-2466182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):123, 175

               
               
               Conread position:1-268
               
               
               Cow position:chr13:3143760-3143490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):189, 83

               
               
               Conread position:1-268
               
               
               Cow position:chr13:3163036-3162749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr13:3822634-3822350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr13:3970095-3970378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr13:4487309-4487590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr13:4944846-4945138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):49, 115

               
               
               Conread position:1-268
               
               
               Cow position:chr13:5498349-5498066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):123, 95

               
               
               Conread position:1-268
               
               
               Cow position:chr13:6664672-6664389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr13:7402861-7403144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:213
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr13:7465641-7465358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr13:9049055-9049321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):13, 28

               
               
               Conread position:1-268
               
               
               Cow position:chr13:11821854-11821568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):103, 35

               
               
               Conread position:1-268
               
               
               Cow position:chr13:13330002-13330284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr13:14590057-14589774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr13:15280744-15281027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr13:15538530-15538248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:207
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr13:15921004-15920726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):123, 55

               
               
               Conread position:1-268
               
               
               Cow position:chr13:17567457-17567736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 17

               
               
               Conread position:1-268
               
               
               Cow position:chr13:17800608-17800324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr13:18121416-18121135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):123, 31

               
               
               Conread position:1-268
               
               
               Cow position:chr13:18329669-18329386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-268
               
               
               Cow position:chr13:19565252-19564969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr13:19638894-19639175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):178, 168

               
               
               Conread position:1-268
               
               
               Cow position:chr13:20377798-20378089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):70, 32

               
               
               Conread position:1-268
               
               
               Cow position:chr13:20538115-20537835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):40, 76

               
               
               Conread position:1-268
               
               
               Cow position:chr13:20561632-20561351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-268
               
               
               Cow position:chr13:21836841-21836567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):123, 52

               
               
               Conread position:1-268
               
               
               Cow position:chr13:22117139-22116855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 108

               
               
               Conread position:1-268
               
               
               Cow position:chr13:24156405-24156121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 108

               
               
               Conread position:1-268
               
               
               Cow position:chr13:28413836-28413549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr13:30306870-30307153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr13:30504991-30504708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr13:30651708-30651427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:213
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):33, 40

               
               
               Conread position:1-268
               
               
               Cow position:chr13:31607982-31607700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:1-268
               
               
               Cow position:chr13:31809045-31808764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):123, 26

               
               
               Conread position:1-268
               
               
               Cow position:chr13:32754705-32754988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):123, 214

               
               
               Conread position:1-268
               
               
               Cow position:chr13:32793886-32793601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr13:32980785-32980502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr13:33907284-33907015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):214, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr13:34282218-34281932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:212
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr13:35540857-35541140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr13:36937175-36937444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr13:37945689-37945968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):123, 18

               
               
               Conread position:1-268
               
               
               Cow position:chr13:41807285-41807027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):122, 14

               
               
               Conread position:1-268
               
               
               Cow position:chr13:42086677-42086396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr13:42114551-42114273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):94, 263

               
               
               Conread position:1-268
               
               
               Cow position:chr13:42215663-42215379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:214
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr13:42277052-42277329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):121, 77

               
               
               Conread position:1-268
               
               
               Cow position:chr13:46055702-46055419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):129, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr13:47023243-47022960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr13:49805501-49805220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:215
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):123, 32

               
               
               Conread position:1-268
               
               
               Cow position:chr13:49977126-49977409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):122, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr13:50440372-50440089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr13:51298032-51297749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr13:51902151-51901864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:213
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):118, 105

               
               
               Conread position:1-268
               
               
               Cow position:chr13:52010057-52010334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):188, 47

               
               
               Conread position:1-268
               
               
               Cow position:chr13:54286241-54286519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):189, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr13:55371626-55371909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr13:57493649-57493932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr13:61954695-61954978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):88, 75

               
               
               Conread position:1-269
               
               
               Cow position:chr13:4420845-4420561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr13:9570549-9570268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):123, 18

               
               
               Conread position:1-269
               
               
               Cow position:chr13:11767435-11767722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):123, 75

               
               
               Conread position:1-269
               
               
               Cow position:chr13:14302531-14302247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):92, 173

               
               
               Conread position:1-269
               
               
               Cow position:chr13:17820728-17821009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr13:20175273-20174990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-269
               
               
               Cow position:chr13:21126549-21126825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):188, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr13:21988574-21988855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 68

               
               
               Conread position:1-269
               
               
               Cow position:chr13:30468662-30468379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr13:32550200-32550481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 49

               
               
               Conread position:1-269
               
               
               Cow position:chr13:32733735-32733451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr13:33466876-33467160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr13:33522500-33522221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:207
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr13:33876189-33875913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):184, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr13:34038101-34037817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:212
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:1-269
               
               
               Cow position:chr13:34262848-34263130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr13:37520815-37521099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:217
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr13:37978655-37978941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):123, 18

               
               
               Conread position:1-269
               
               
               Cow position:chr13:45353556-45353293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):123, 44

               
               
               Conread position:1-269
               
               
               Cow position:chr13:48164943-48165224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr13:60646129-60645847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr13:61976432-61976714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-270
               
               
               Cow position:chr13:2800340-2800625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-270
               
               
               Cow position:chr13:19262312-19262059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):118, 105

               
               
               Conread position:1-270
               
               
               Cow position:chr13:24370939-24370650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:1-270
               
               
               Cow position:chr13:34375789-34375505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):123, 35

               
               
               Conread position:1-274
               
               
               Cow position:chr13:47215712-47216007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):66, 54

               
               
               Conread position:1-277
               
               
               Cow position:chr13:31757146-31756868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-277
               
               
               Cow position:chr13:35761027-35761325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:1-280
               
               
               Cow position:chr13:46465762-46465465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):123, 275

               
               
               Conread position:1-282
               
               
               Cow position:chr13:12389922-12389624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:220
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-282
               
               
               Cow position:chr13:15869658-15869352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:1-282
               
               
               Cow position:chr13:21235155-21235452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 107

               
               
               Conread position:1-288
               
               
               Cow position:chr13:46324256-46324555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-302
               
               
               Cow position:chr13:32319676-32319370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):123, 71

               
               
               Conread position:1-303
               
               
               Cow position:chr13:60967325-60967008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):123, 23

               
               
               Conread position:2-186
               
               
               Cow position:chr13:5229100-5228914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-188
               
               
               Cow position:chr13:32221425-32221237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-258
               
               
               Cow position:chr13:22085226-22085498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):128, 70

               
               
               Conread position:2-265
               
               
               Cow position:chr13:2955309-2955586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):121, 12

               
               
               Conread position:2-268
               
               
               Cow position:chr13:2557977-2558258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):122, 94

               
               
               Conread position:2-269
               
               
               Cow position:chr13:51941267-51940980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):122, 26

               
               
               Conread position:3-265
               
               
               Cow position:chr13:1011865-1011587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:3-265
               
               
               Cow position:chr13:20440067-20440346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:213
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):76, 105

               
               
               Conread position:3-265
               
               
               Cow position:chr13:52585491-52585768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:205
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:3-268
               
               
               Cow position:chr13:16808040-16808321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:4-122
               
               
               Cow position:chr13:34332982-34333099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:92
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:4-304
               
               
               Cow position:chr13:21764801-21765092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):123, 24

               
               
               Conread position:6-268
               
               
               Cow position:chr13:1346705-1346426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):87, 103

               
               
               Conread position:6-268
               
               
               Cow position:chr13:30794344-30794073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:205
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):180, 101

               
               
               Conread position:6-288
               
               
               Cow position:chr13:7365915-7366212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):118, 101

               
               
               Conread position:6-289
               
               
               Cow position:chr13:58718976-58719277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):121, 37

               
               
               Conread position:7-270
               
               
               Cow position:chr13:22790444-22790166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):117, 100

               
               
               Conread position:7-303
               
               
               Cow position:chr13:34994404-34994715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):113, 30

               
               
               Conread position:8-264
               
               
               Cow position:chr13:33332877-33332605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):116, 99

               
               
               Conread position:9-270
               
               
               Cow position:chr13:33500209-33499934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):115, 19

               
               
               Conread position:12-268
               
               
               Cow position:chr13:9002272-9002000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):113, 95

               
               
               Conread position:12-268
               
               
               Cow position:chr13:25434601-25434877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:14-263
               
               
               Cow position:chr13:8961100-8960836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):70, 62

               
               
               Conread position:16-184
               
               
               Cow position:chr13:13177363-13177193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):108, 91

               
               
               Conread position:16-265
               
               
               Cow position:chr13:49514215-49514480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:16-268
               
               
               Cow position:chr13:19426179-19426446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):108, 49

               
               
               Conread position:16-268
               
               
               Cow position:chr13:60447574-60447841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):108, 91

               
               
               Conread position:17-306
               
               
               Cow position:chr13:40722165-40722471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:234
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):107, 90

               
               
               Conread position:18-178
               
               
               Cow position:chr13:60450087-60449926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):106, 89

               
               
               Conread position:18-268
               
               
               Cow position:chr13:14716818-14717085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):151, 11

               
               
               Conread position:19-266
               
               
               Cow position:chr13:27027261-27027521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:198
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):105, 88

               
               
               Conread position:20-269
               
               
               Cow position:chr13:50284719-50284454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):110, 87

               
               
               Conread position:21-264
               
               
               Cow position:chr13:5261836-5262094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):103, 20

               
               
               Conread position:23-260
               
               
               Cow position:chr13:18908547-18908297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):101, 44

               
               
               Conread position:23-268
               
               
               Cow position:chr13:8636091-8635832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):153, 145

               
               
               Conread position:23-268
               
               
               Cow position:chr13:15537005-15536745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):107, 84

               
               
               Conread position:24-285
               
               
               Cow position:chr13:23586680-23586394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):53, 86

               
               
               Conread position:25-262
               
               
               Cow position:chr13:20088046-20088290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):99, 28

               
               
               Conread position:25-269
               
               
               Cow position:chr13:18533923-18534183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):99, 82

               
               
               Conread position:27-268
               
               
               Cow position:chr13:311941-311684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):97, 80

               
               
               Conread position:28-268
               
               
               Cow position:chr13:20665881-20666136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):51, 81

               
               
               Conread position:28-299
               
               
               Cow position:chr13:23856745-23856459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):94, 53

               
               
               Conread position:29-188
               
               
               Cow position:chr13:11202723-11202568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):85, 21

               
               
               Conread position:29-296
               
               
               Cow position:chr13:50681255-50681536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):95, 79

               
               
               Conread position:30-279
               
               
               Cow position:chr13:43762669-43762413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):159, 78

               
               
               Conread position:30-300
               
               
               Cow position:chr13:8195613-8195328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:214
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):94, 77

               
               
               Conread position:31-268
               
               
               Cow position:chr13:15872953-15872701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):5, 80

               
               
               Conread position:35-188
               
               
               Cow position:chr13:9587101-9587265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):45, 77

               
               
               Conread position:35-265
               
               
               Cow position:chr13:5278471-5278718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:35-268
               
               
               Cow position:chr13:12407783-12408032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):89, 72

               
               
               Conread position:44-268
               
               
               Cow position:chr13:12044849-12045089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:48-293
               
               
               Cow position:chr13:21210415-21210157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):76, 13

               
               
               Conread position:48-306
               
               
               Cow position:chr13:34052109-34052390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):77, 41

               
               
               Conread position:55-267
               
               
               Cow position:chr13:51527966-51528193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):69, 52

               
               
               Conread position:58-265
               
               
               Cow position:chr13:25413157-25412933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:58-268
               
               
               Cow position:chr13:16092283-16092058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):7, 50

               
               
               Conread position:59-265
               
               
               Cow position:chr13:24099510-24099732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):65, 48

               
               
               Conread position:60-280
               
               
               Cow position:chr13:48038602-48038366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):62, 47

               
               
               Conread position:61-188
               
               
               Cow position:chr13:20805362-20805233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):62, 46

               
               
               Conread position:71-263
               
               
               Cow position:chr13:37516675-37516877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):54, 36

               
               
               Conread position:71-268
               
               
               Cow position:chr13:5621869-5621656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):53, 36

               
               
               Conread position:77-299
               
               
               Cow position:chr13:9108064-9107831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):47, 31

               
               
               Conread position:78-270
               
               
               Cow position:chr13:7662975-7663179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):46, 32

               
               
               Conread position:84-268
               
               
               Cow position:chr13:58044080-58043880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 23

               
               
               Conread position:85-269
               
               
               Cow position:chr13:47313348-47313154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:88-263
               
               
               Cow position:chr13:36770974-36771165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:109-268
               
               
               Cow position:chr13:8202463-8202633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:209-303
               
               
               Cow position:chr13:46458947-46458852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:81
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:1-184
               
               
               Cow position:chr14:20666428-20666613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-186
               
               
               Cow position:chr14:31129763-31129953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:1-187
               
               
               Cow position:chr14:33773297-33773484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):123, 20

               
               
               Conread position:1-187
               
               
               Cow position:chr14:50293967-50293776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:1-188
               
               
               Cow position:chr14:20467452-20467643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1-188
               
               
               Cow position:chr14:27362483-27362680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-188
               
               
               Cow position:chr14:27844654-27844837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1-188
               
               
               Cow position:chr14:35018227-35018414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):123, 32

               
               
               Conread position:1-189
               
               
               Cow position:chr14:23215528-23215718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):35, 26

               
               
               Conread position:1-189
               
               
               Cow position:chr14:33667646-33667843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:1-196
               
               
               Cow position:chr14:11843878-11844075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-211
               
               
               Cow position:chr14:1789135-1789342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):181, 109

               
               
               Conread position:1-244
               
               
               Cow position:chr14:45513088-45512821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:1-249
               
               
               Cow position:chr14:19407218-19407488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):119, 96

               
               
               Conread position:1-258
               
               
               Cow position:chr14:2037359-2037623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):114, 32

               
               
               Conread position:1-258
               
               
               Cow position:chr14:13309057-13309328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1-258
               
               
               Cow position:chr14:18940725-18940987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):189, 71

               
               
               Conread position:1-258
               
               
               Cow position:chr14:21534458-21534727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-258
               
               
               Cow position:chr14:23308340-23308070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:200
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-258
               
               
               Cow position:chr14:28008398-28008126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):123, 29

               
               
               Conread position:1-258
               
               
               Cow position:chr14:33337593-33337866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:203
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):122, 97

               
               
               Conread position:1-258
               
               
               Cow position:chr14:33462749-33462475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):35, 16

               
               
               Conread position:1-258
               
               
               Cow position:chr14:50027803-50027525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-259
               
               
               Cow position:chr14:38143542-38143815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):123, 64

               
               
               Conread position:1-259
               
               
               Cow position:chr14:45300235-45300510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:1-260
               
               
               Cow position:chr14:28350382-28350112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):123, 59

               
               
               Conread position:1-260
               
               
               Cow position:chr14:38047502-38047777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-261
               
               
               Cow position:chr14:38379875-38379600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:205
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):122, 43

               
               
               Conread position:1-261
               
               
               Cow position:chr14:47974576-47974306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):122, 161

               
               
               Conread position:1-262
               
               
               Cow position:chr14:48828546-48828822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):124, 95

               
               
               Conread position:1-263
               
               
               Cow position:chr14:44233562-44233821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:1-264
               
               
               Cow position:chr14:7018764-7018493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):197, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr14:7476329-7476607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-264
               
               
               Cow position:chr14:12739723-12739444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr14:25886094-25885815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):123, 77

               
               
               Conread position:1-264
               
               
               Cow position:chr14:28993027-28992748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):32, 38

               
               
               Conread position:1-264
               
               
               Cow position:chr14:45046072-45046351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):123, 108

               
               
               Conread position:1-265
               
               
               Cow position:chr14:8754920-8754637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr14:9511408-9511132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):19, 75

               
               
               Conread position:1-265
               
               
               Cow position:chr14:11150590-11150310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1-265
               
               
               Cow position:chr14:11564860-11565145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):83, 52

               
               
               Conread position:1-265
               
               
               Cow position:chr14:14465685-14465960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):122, 32

               
               
               Conread position:1-265
               
               
               Cow position:chr14:21087520-21087240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:1-265
               
               
               Cow position:chr14:22863032-22863312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):119, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr14:24992406-24992125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):118, 60

               
               
               Conread position:1-265
               
               
               Cow position:chr14:34124593-34124863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):79, 32

               
               
               Conread position:1-265
               
               
               Cow position:chr14:38295699-38295979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr14:45777722-45778006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):116, 163

               
               
               Conread position:1-265
               
               
               Cow position:chr14:46075178-46074899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:208
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr14:46435235-46435515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:209
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr14:47507686-47507417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):40, 47

               
               
               Conread position:1-265
               
               
               Cow position:chr14:49411668-49411948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):32, 108

               
               
               Conread position:1-267
               
               
               Cow position:chr14:43792956-43792671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):123, 90

               
               
               Conread position:1-268
               
               
               Cow position:chr14:193474-193757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):82, 75

               
               
               Conread position:1-268
               
               
               Cow position:chr14:403484-403767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr14:1727470-1727754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr14:5379483-5379765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr14:5491974-5491690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr14:5501560-5501842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr14:5532665-5532948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr14:8396454-8396171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:214
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr14:8884568-8884285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr14:9812005-9812287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):123, 175

               
               
               Conread position:1-268
               
               
               Cow position:chr14:11468593-11468871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):189, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr14:12272572-12272289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr14:12858181-12857899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-268
               
               
               Cow position:chr14:13619123-13618840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr14:13723011-13723289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):123, 46

               
               
               Conread position:1-268
               
               
               Cow position:chr14:13860223-13859941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):123, 17

               
               
               Conread position:1-268
               
               
               Cow position:chr14:14443116-14442833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr14:15336149-15335866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr14:15904533-15904816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr14:16996422-16996134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):123, 10

               
               
               Conread position:1-268
               
               
               Cow position:chr14:17094063-17094342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):121, 13

               
               
               Conread position:1-268
               
               
               Cow position:chr14:18527009-18526727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:207
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr14:19550809-19551092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr14:20640035-20640311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):189, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr14:21201235-21201520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr14:21314109-21313840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr14:22026452-22026171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):159, 154

               
               
               Conread position:1-268
               
               
               Cow position:chr14:22689544-22689261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr14:25682544-25682255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):93, 143

               
               
               Conread position:1-268
               
               
               Cow position:chr14:26116655-26116373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr14:26128854-26128571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr14:27040059-27039782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr14:28138151-28137868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr14:29044078-29043795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr14:30664597-30664311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr14:30927599-30927316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr14:32583709-32583426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr14:34345940-34345658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr14:34370834-34371118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr14:34519735-34520019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr14:34675424-34675706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr14:35016729-35017012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):33, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr14:37227519-37227800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr14:38016857-38017131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-268
               
               
               Cow position:chr14:38237769-38237486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr14:39710487-39710770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):82, 75

               
               
               Conread position:1-268
               
               
               Cow position:chr14:39891859-39891576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr14:40346585-40346868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr14:41479066-41479349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr14:44293943-44294226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr14:44367999-44368282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr14:44382605-44382890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr14:45996255-45995974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr14:46124670-46124950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):123, 25

               
               
               Conread position:1-268
               
               
               Cow position:chr14:48251130-48250848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):112, 173

               
               
               Conread position:1-268
               
               
               Cow position:chr14:48492205-48492475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):123, 46

               
               
               Conread position:1-268
               
               
               Cow position:chr14:50114667-50114949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):82, 75

               
               
               Conread position:1-269
               
               
               Cow position:chr14:6530545-6530262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr14:8981986-8982265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):112, 97

               
               
               Conread position:1-269
               
               
               Cow position:chr14:12035961-12036239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr14:12483724-12484002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):189, 122

               
               
               Conread position:1-269
               
               
               Cow position:chr14:16916435-16916154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):122, 85

               
               
               Conread position:1-269
               
               
               Cow position:chr14:18811526-18811810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):113, 49

               
               
               Conread position:1-269
               
               
               Cow position:chr14:20786708-20786991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):110, 14

               
               
               Conread position:1-269
               
               
               Cow position:chr14:21597019-21597305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):67, 107

               
               
               Conread position:1-269
               
               
               Cow position:chr14:28103306-28103024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:1-269
               
               
               Cow position:chr14:33834682-33834406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):123, 32

               
               
               Conread position:1-269
               
               
               Cow position:chr14:39774463-39774746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):121, 99

               
               
               Conread position:1-269
               
               
               Cow position:chr14:43561491-43561774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr14:45025000-45024716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:212
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr14:46489673-46489947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):185, 26

               
               
               Conread position:1-269
               
               
               Cow position:chr14:46735909-46735626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-273
               
               
               Cow position:chr14:108707-108977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):193, 106

               
               
               Conread position:1-277
               
               
               Cow position:chr14:17690451-17690744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-277
               
               
               Cow position:chr14:19654376-19654663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-277
               
               
               Cow position:chr14:28378961-28378661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):65, 116

               
               
               Conread position:1-277
               
               
               Cow position:chr14:46085332-46085624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):121, 108

               
               
               Conread position:1-279
               
               
               Cow position:chr14:37883322-37883619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 106

               
               
               Conread position:1-282
               
               
               Cow position:chr14:34984432-34984130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:228
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):122, 20

               
               
               Conread position:1-284
               
               
               Cow position:chr14:31734265-31734562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):9, 124

               
               
               Conread position:1-284
               
               
               Cow position:chr14:39937454-39937756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):123, 9

               
               
               Conread position:1-284
               
               
               Cow position:chr14:40462164-40461866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:220
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-289
               
               
               Cow position:chr14:30094623-30094326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):123, 95

               
               
               Conread position:1-289
               
               
               Cow position:chr14:35382175-35381878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-303
               
               
               Cow position:chr14:47043255-47043571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):77, 59

               
               
               Conread position:1-306
               
               
               Cow position:chr14:33791796-33791486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):189, 49

               
               
               Conread position:2-182
               
               
               Cow position:chr14:5519689-5519507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-254
               
               
               Cow position:chr14:39433688-39433962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:2-260
               
               
               Cow position:chr14:38391567-38391846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:2-265
               
               
               Cow position:chr14:12519741-12520019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):122, 26

               
               
               Conread position:2-265
               
               
               Cow position:chr14:44741794-44742074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):119, 105

               
               
               Conread position:2-268
               
               
               Cow position:chr14:22380964-22381245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):122, 48

               
               
               Conread position:2-268
               
               
               Cow position:chr14:34906852-34907134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-268
               
               
               Cow position:chr14:44026489-44026208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):115, 139

               
               
               Conread position:2-268
               
               
               Cow position:chr14:46224260-46223981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):122, 112

               
               
               Conread position:2-269
               
               
               Cow position:chr14:12243795-12244077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):14, 81

               
               
               Conread position:2-294
               
               
               Cow position:chr14:30758883-30758567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):122, 94

               
               
               Conread position:3-188
               
               
               Cow position:chr14:41212481-41212296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):119, 16

               
               
               Conread position:3-258
               
               
               Cow position:chr14:13768968-13768696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:3-265
               
               
               Cow position:chr14:6599368-6599639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:3-268
               
               
               Cow position:chr14:13297281-13297002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:3-268
               
               
               Cow position:chr14:41081316-41081035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):121, 111

               
               
               Conread position:3-268
               
               
               Cow position:chr14:44237109-44237390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-268
               
               
               Cow position:chr14:49995218-49994938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):110, 171

               
               
               Conread position:3-269
               
               
               Cow position:chr14:9110142-9110424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):31, 106

               
               
               Conread position:4-268
               
               
               Cow position:chr14:2289576-2289856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):120, 103

               
               
               Conread position:6-268
               
               
               Cow position:chr14:13582186-13582462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):118, 101

               
               
               Conread position:6-269
               
               
               Cow position:chr14:39616316-39616602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:7-211
               
               
               Cow position:chr14:17525685-17525892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):116, 100

               
               
               Conread position:7-294
               
               
               Cow position:chr14:40999679-40999364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):49, 102

               
               
               Conread position:8-268
               
               
               Cow position:chr14:10710852-10711135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):40, 106

               
               
               Conread position:8-268
               
               
               Cow position:chr14:32471231-32470959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:200
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):104, 247

               
               
               Conread position:9-264
               
               
               Cow position:chr14:35354890-35354620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):116, 99

               
               
               Conread position:9-268
               
               
               Cow position:chr14:8997930-8997654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:10-265
               
               
               Cow position:chr14:8784758-8784488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:10-268
               
               
               Cow position:chr14:15271930-15271656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):114, 104

               
               
               Conread position:11-264
               
               
               Cow position:chr14:47584066-47584335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):45, 17

               
               
               Conread position:11-306
               
               
               Cow position:chr14:46331288-46330977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):113, 34

               
               
               Conread position:12-269
               
               
               Cow position:chr14:1802543-1802812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):111, 95

               
               
               Conread position:14-264
               
               
               Cow position:chr14:11473986-11473720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):110, 93

               
               
               Conread position:15-188
               
               
               Cow position:chr14:39519285-39519111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):109, 92

               
               
               Conread position:15-253
               
               
               Cow position:chr14:16353143-16352887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):86, 15

               
               
               Conread position:16-265
               
               
               Cow position:chr14:13385952-13385686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):78, 92

               
               
               Conread position:16-272
               
               
               Cow position:chr14:35001628-35001904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):108, 41

               
               
               Conread position:18-264
               
               
               Cow position:chr14:12834181-12834443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):106, 89

               
               
               Conread position:18-268
               
               
               Cow position:chr14:17762057-17761793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):102, 89

               
               
               Conread position:19-260
               
               
               Cow position:chr14:5200149-5200406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):107, 88

               
               
               Conread position:19-265
               
               
               Cow position:chr14:17900051-17899785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):17, 9

               
               
               Conread position:20-268
               
               
               Cow position:chr14:17756128-17755869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):102, 23

               
               
               Conread position:22-265
               
               
               Cow position:chr14:27792106-27791843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):102, 85

               
               
               Conread position:22-268
               
               
               Cow position:chr14:12546018-12546279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):102, 85

               
               
               Conread position:23-188
               
               
               Cow position:chr14:46966933-46966764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:27-263
               
               
               Cow position:chr14:35543949-35544200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):95, 80

               
               
               Conread position:28-186
               
               
               Cow position:chr14:2832539-2832701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):95, 79

               
               
               Conread position:28-258
               
               
               Cow position:chr14:24894317-24894077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):96, 29

               
               
               Conread position:29-264
               
               
               Cow position:chr14:23056169-23055918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):95, 78

               
               
               Conread position:30-265
               
               
               Cow position:chr14:16341879-16342128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):93, 129

               
               
               Conread position:32-186
               
               
               Cow position:chr14:20827249-20827094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):92, 66

               
               
               Conread position:35-265
               
               
               Cow position:chr14:41749214-41749451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):89, 73

               
               
               Conread position:35-268
               
               
               Cow position:chr14:19818934-19818685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):89, 72

               
               
               Conread position:35-269
               
               
               Cow position:chr14:35650641-35650893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:36-186
               
               
               Cow position:chr14:18308588-18308740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):88, 72

               
               
               Conread position:36-188
               
               
               Cow position:chr14:15054435-15054590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):57, 141

               
               
               Conread position:36-270
               
               
               Cow position:chr14:20600938-20600689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):88, 21

               
               
               Conread position:36-270
               
               
               Cow position:chr14:27312990-27312746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):88, 24

               
               
               Conread position:38-188
               
               
               Cow position:chr14:42406816-42406969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):86, 69

               
               
               Conread position:41-265
               
               
               Cow position:chr14:23153630-23153863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):147, 67

               
               
               Conread position:41-268
               
               
               Cow position:chr14:49824098-49824328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):149, 66

               
               
               Conread position:42-188
               
               
               Cow position:chr14:28098356-28098208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):82, 65

               
               
               Conread position:44-268
               
               
               Cow position:chr14:10541512-10541273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):80, 64

               
               
               Conread position:46-263
               
               
               Cow position:chr14:14326559-14326789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):78, 61

               
               
               Conread position:46-269
               
               
               Cow position:chr14:8829570-8829809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:46-293
               
               
               Cow position:chr14:45238978-45239238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):77, 154

               
               
               Conread position:47-268
               
               
               Cow position:chr14:28988237-28988001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):77, 61

               
               
               Conread position:49-257
               
               
               Cow position:chr14:36424154-36424376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):75, 58

               
               
               Conread position:50-268
               
               
               Cow position:chr14:11146637-11146870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):74, 56

               
               
               Conread position:52-293
               
               
               Cow position:chr14:46653961-46654218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):72, 55

               
               
               Conread position:57-262
               
               
               Cow position:chr14:27865600-27865822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:58-244
               
               
               Cow position:chr14:39617850-39618051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):67, 49

               
               
               Conread position:60-258
               
               
               Cow position:chr14:21964650-21964436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):64, 47

               
               
               Conread position:60-269
               
               
               Cow position:chr14:23591942-23591718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):64, 47

               
               
               Conread position:68-268
               
               
               Cow position:chr14:24702349-24702565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):52, 39

               
               
               Conread position:78-249
               
               
               Cow position:chr14:7557925-7558110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):45, 29

               
               
               Conread position:78-268
               
               
               Cow position:chr14:28090459-28090665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):46, 29

               
               
               Conread position:129-268
               
               
               Cow position:chr14:106123-106265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):76, 120

               
               
               Conread position:1-153
               
               
               Cow position:chr15:52607666-52607515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:1-184
               
               
               Cow position:chr15:44164941-44165128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:1-185
               
               
               Cow position:chr15:19960833-19960644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:1-186
               
               
               Cow position:chr15:40419-40230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1-186
               
               
               Cow position:chr15:8028688-8028501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-186
               
               
               Cow position:chr15:11657943-11658131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):89, 107

               
               
               Conread position:1-186
               
               
               Cow position:chr15:52197676-52197863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):35, 81

               
               
               Conread position:1-187
               
               
               Cow position:chr15:25907865-25907677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):123, 97

               
               
               Conread position:1-188
               
               
               Cow position:chr15:28126594-28126406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):122, 37

               
               
               Conread position:1-188
               
               
               Cow position:chr15:29340774-29340587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):122, 80

               
               
               Conread position:1-188
               
               
               Cow position:chr15:36622194-36622009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):133, 106

               
               
               Conread position:1-188
               
               
               Cow position:chr15:39090898-39090712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:1-188
               
               
               Cow position:chr15:52611970-52611781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):124, 106

               
               
               Conread position:1-189
               
               
               Cow position:chr15:10088868-10088680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):123, 66

               
               
               Conread position:1-189
               
               
               Cow position:chr15:23703405-23703213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-190
               
               
               Cow position:chr15:19734137-19733947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1-211
               
               
               Cow position:chr15:32489135-32488916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-254
               
               
               Cow position:chr15:37382262-37381992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:202
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-255
               
               
               Cow position:chr15:9870767-9871047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:212
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:1-257
               
               
               Cow position:chr15:34140659-34140375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):22, 193

               
               
               Conread position:1-257
               
               
               Cow position:chr15:38899060-38898789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):124, 97

               
               
               Conread position:1-258
               
               
               Cow position:chr15:7271670-7271945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-258
               
               
               Cow position:chr15:26933373-26933651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-260
               
               
               Cow position:chr15:4728479-4728753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-260
               
               
               Cow position:chr15:4821741-4821467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-262
               
               
               Cow position:chr15:1329467-1329744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-262
               
               
               Cow position:chr15:15040798-15041072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:205
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-262
               
               
               Cow position:chr15:22168702-22168425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:208
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-263
               
               
               Cow position:chr15:13683658-13683923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):189, 66

               
               
               Conread position:1-263
               
               
               Cow position:chr15:24821741-24822022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):123, 14

               
               
               Conread position:1-263
               
               
               Cow position:chr15:45244918-45245189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr15:3720812-3720533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr15:4925475-4925753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:206
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):122, 27

               
               
               Conread position:1-264
               
               
               Cow position:chr15:15881558-15881283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:209
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:1-265
               
               
               Cow position:chr15:481893-482172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr15:1602288-1602566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):29, 92

               
               
               Conread position:1-265
               
               
               Cow position:chr15:4642529-4642810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr15:4933938-4934209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):122, 45

               
               
               Conread position:1-265
               
               
               Cow position:chr15:6082005-6082284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-265
               
               
               Cow position:chr15:7841649-7841930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 175

               
               
               Conread position:1-265
               
               
               Cow position:chr15:10336381-10336110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:203
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):114, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr15:19911013-19910733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:207
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr15:24129314-24129041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):189, 27

               
               
               Conread position:1-265
               
               
               Cow position:chr15:25069165-25068887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr15:31949638-31949359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):126, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr15:31993163-31992885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):123, 44

               
               
               Conread position:1-265
               
               
               Cow position:chr15:36435850-36435565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):52, 113

               
               
               Conread position:1-265
               
               
               Cow position:chr15:38102862-38103142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):128, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr15:38395255-38394981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:201
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr15:53352929-53353196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):131, 66

               
               
               Conread position:1-267
               
               
               Cow position:chr15:21532809-21532528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr15:67237-66955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):123, 175

               
               
               Conread position:1-268
               
               
               Cow position:chr15:363646-363374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):35, 21

               
               
               Conread position:1-268
               
               
               Cow position:chr15:442460-442178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:488945-488662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:608800-608512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr15:1653302-1653585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:2898926-2898656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-268
               
               
               Cow position:chr15:3154247-3154529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:3494514-3494234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):187, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:3734775-3734494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:3793616-3793899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:3892914-3893194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:4796626-4796352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:4953745-4954027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-268
               
               
               Cow position:chr15:5020692-5020971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr15:5498393-5498673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:5567686-5567965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):142, 48

               
               
               Conread position:1-268
               
               
               Cow position:chr15:5939064-5938781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:6158510-6158793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:216
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:6163776-6163500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):193, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:6464391-6464673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):126, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:6538269-6538547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):123, 90

               
               
               Conread position:1-268
               
               
               Cow position:chr15:6550284-6550001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):82, 73

               
               
               Conread position:1-268
               
               
               Cow position:chr15:6617128-6617411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:6764528-6764247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):112, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:6960026-6960309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):123, 175

               
               
               Conread position:1-268
               
               
               Cow position:chr15:7548172-7548449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):124, 145

               
               
               Conread position:1-268
               
               
               Cow position:chr15:7566332-7566605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):123, 97

               
               
               Conread position:1-268
               
               
               Cow position:chr15:8576482-8576765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:9160440-9160159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:9267420-9267707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):115, 14

               
               
               Conread position:1-268
               
               
               Cow position:chr15:10034343-10034060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:10243449-10243733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):48, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr15:10441953-10442235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:11596052-11595773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:12272227-12271944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr15:12417385-12417102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:12442856-12443139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr15:13076855-13077133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:211
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):124, 46

               
               
               Conread position:1-268
               
               
               Cow position:chr15:13431489-13431772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:13669266-13669548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:15343779-15343497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:18214898-18215181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:18230333-18230616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:18277775-18278059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):89, 74

               
               
               Conread position:1-268
               
               
               Cow position:chr15:18580228-18580510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr15:18661816-18662097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):123, 14

               
               
               Conread position:1-268
               
               
               Cow position:chr15:20413904-20414186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr15:20458663-20458944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:20533812-20534094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:212
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):122, 20

               
               
               Conread position:1-268
               
               
               Cow position:chr15:21152491-21152208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:21608091-21608375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:21645805-21646088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:21807179-21807462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:21826196-21826479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):92, 177

               
               
               Conread position:1-268
               
               
               Cow position:chr15:21909082-21908797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):28, 108

               
               
               Conread position:1-268
               
               
               Cow position:chr15:21910752-21910484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):21, 108

               
               
               Conread position:1-268
               
               
               Cow position:chr15:24617202-24616919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):119, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:24968426-24968143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:25203642-25203359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:27422761-27423040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-268
               
               
               Cow position:chr15:27747185-27746902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:28039386-28039108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):42, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr15:28982105-28981822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:29653976-29654259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:30809622-30809905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr15:31160954-31160671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr15:32690285-32690568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:32701408-32701125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr15:33376168-33376452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):129, 105

               
               
               Conread position:1-268
               
               
               Cow position:chr15:34064273-34064557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):129, 22

               
               
               Conread position:1-268
               
               
               Cow position:chr15:34744442-34744159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):92, 5

               
               
               Conread position:1-268
               
               
               Cow position:chr15:37370525-37370242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:37395032-37395315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:38984004-38984287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:39406598-39406316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 62

               
               
               Conread position:1-268
               
               
               Cow position:chr15:39560206-39560489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:42584537-42584820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:42595088-42595371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:42727703-42727984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):110, 28

               
               
               Conread position:1-268
               
               
               Cow position:chr15:44073775-44074059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr15:49307123-49307406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:50142589-50142872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:52208167-52207884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:53102325-53102045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr15:53135432-53135149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr15:15215939-15215651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):124, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr15:24568428-24568144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr15:25540257-25539973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr15:31357271-31356987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr15:32877913-32878208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):34, 61

               
               
               Conread position:1-269
               
               
               Cow position:chr15:33681298-33681012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):21, 123

               
               
               Conread position:1-269
               
               
               Cow position:chr15:44635804-44636091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):31, 110

               
               
               Conread position:1-269
               
               
               Cow position:chr15:48842050-48841780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):126, 54

               
               
               Conread position:1-270
               
               
               Cow position:chr15:25164774-25164489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:216
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-270
               
               
               Cow position:chr15:33285506-33285226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-272
               
               
               Cow position:chr15:50957154-50957443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-273
               
               
               Cow position:chr15:4214490-4214778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-274
               
               
               Cow position:chr15:4655158-4655447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-275
               
               
               Cow position:chr15:21902805-21903094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):123, 77

               
               
               Conread position:1-281
               
               
               Cow position:chr15:5461155-5461450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):122, 26

               
               
               Conread position:1-284
               
               
               Cow position:chr15:22532877-22532578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):134, 106

               
               
               Conread position:1-287
               
               
               Cow position:chr15:24797157-24797466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:224
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:1-287
               
               
               Cow position:chr15:33228728-33228425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):120, 97

               
               
               Conread position:1-294
               
               
               Cow position:chr15:47201231-47200928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:218
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-297
               
               
               Cow position:chr15:5983959-5984258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):41, 14

               
               
               Conread position:1-298
               
               
               Cow position:chr15:5913264-5912944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:229
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):122, 107

               
               
               Conread position:1-298
               
               
               Cow position:chr15:35749969-35749651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):21, 310

               
               
               Conread position:1-299
               
               
               Cow position:chr15:23332219-23332540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):32, 112

               
               
               Conread position:1-303
               
               
               Cow position:chr15:6944707-6944396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:229
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-303
               
               
               Cow position:chr15:14578102-14577786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:232
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):19, 107

               
               
               Conread position:1-303
               
               
               Cow position:chr15:53232172-53231853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-304
               
               
               Cow position:chr15:17236340-17236020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-305
               
               
               Cow position:chr15:2928573-2928885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:231
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):33, 22

               
               
               Conread position:1-305
               
               
               Cow position:chr15:10456370-10456678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:228
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):190, 106

               
               
               Conread position:1-306
               
               
               Cow position:chr15:22095745-22095428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):187, 48

               
               
               Conread position:1-306
               
               
               Cow position:chr15:36781670-36781993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:2-178
               
               
               Cow position:chr15:51401904-51402085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):75, 110

               
               
               Conread position:2-268
               
               
               Cow position:chr15:14506062-14505783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:209
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):122, 74

               
               
               Conread position:2-269
               
               
               Cow position:chr15:6648083-6647803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):122, 51

               
               
               Conread position:2-270
               
               
               Cow position:chr15:24285628-24285342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):34, 28

               
               
               Conread position:2-274
               
               
               Cow position:chr15:33605564-33605271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):31, 114

               
               
               Conread position:2-291
               
               
               Cow position:chr15:1776491-1776790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:221
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:3-177
               
               
               Cow position:chr15:7575134-7575310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):120, 104

               
               
               Conread position:3-189
               
               
               Cow position:chr15:4713240-4713428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):78, 84

               
               
               Conread position:3-195
               
               
               Cow position:chr15:2805941-2805748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):63, 108

               
               
               Conread position:3-196
               
               
               Cow position:chr15:7750524-7750718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-258
               
               
               Cow position:chr15:49258705-49258437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):119, 40

               
               
               Conread position:3-259
               
               
               Cow position:chr15:15707481-15707754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:3-265
               
               
               Cow position:chr15:7941748-7942026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:205
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):121, 107

               
               
               Conread position:3-265
               
               
               Cow position:chr15:23567488-23567765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):120, 7

               
               
               Conread position:3-265
               
               
               Cow position:chr15:50568808-50568530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):52, 89

               
               
               Conread position:3-268
               
               
               Cow position:chr15:4769835-4770113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):80, 73

               
               
               Conread position:3-268
               
               
               Cow position:chr15:6530201-6530483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):122, 104

               
               
               Conread position:3-268
               
               
               Cow position:chr15:17034302-17034024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):121, 45

               
               
               Conread position:3-268
               
               
               Cow position:chr15:30985158-30985441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:3-268
               
               
               Cow position:chr15:37744385-37744666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:209
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):127, 104

               
               
               Conread position:3-268
               
               
               Cow position:chr15:38969768-38969492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):116, 67

               
               
               Conread position:3-269
               
               
               Cow position:chr15:4676370-4676651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):177, 104

               
               
               Conread position:3-284
               
               
               Cow position:chr15:6506374-6506076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-291
               
               
               Cow position:chr15:11010941-11011255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):27, 101

               
               
               Conread position:3-295
               
               
               Cow position:chr15:50302841-50302532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):100, 286

               
               
               Conread position:3-304
               
               
               Cow position:chr15:36355409-36355094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:228
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):45, 105

               
               
               Conread position:4-188
               
               
               Cow position:chr15:27128248-27128062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):120, 103

               
               
               Conread position:4-263
               
               
               Cow position:chr15:45323644-45323368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):113, 103

               
               
               Conread position:4-265
               
               
               Cow position:chr15:10476791-10476508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):73, 8

               
               
               Conread position:4-277
               
               
               Cow position:chr15:35824720-35825012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):45, 106

               
               
               Conread position:5-268
               
               
               Cow position:chr15:20352477-20352195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):119, 102

               
               
               Conread position:5-283
               
               
               Cow position:chr15:6906185-6905894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:222
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):75, 60

               
               
               Conread position:6-188
               
               
               Cow position:chr15:4874009-4873829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):120, 30

               
               
               Conread position:7-259
               
               
               Cow position:chr15:41792995-41792725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):23, 70

               
               
               Conread position:8-268
               
               
               Cow position:chr15:47842636-47842910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):116, 99

               
               
               Conread position:8-269
               
               
               Cow position:chr15:19118984-19119262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):81, 100

               
               
               Conread position:9-185
               
               
               Cow position:chr15:22752090-22751912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):115, 99

               
               
               Conread position:9-249
               
               
               Cow position:chr15:25208133-25208392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):65, 10

               
               
               Conread position:9-268
               
               
               Cow position:chr15:51632417-51632689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):115, 27

               
               
               Conread position:9-302
               
               
               Cow position:chr15:1298393-1298089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:223
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):105, 98

               
               
               Conread position:10-265
               
               
               Cow position:chr15:29476203-29475933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):109, 165

               
               
               Conread position:10-269
               
               
               Cow position:chr15:41583545-41583271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):114, 97

               
               
               Conread position:12-253
               
               
               Cow position:chr15:29792294-29792555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:12-262
               
               
               Cow position:chr15:33313817-33314085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):24, 15

               
               
               Conread position:15-269
               
               
               Cow position:chr15:33511469-33511199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):109, 92

               
               
               Conread position:15-303
               
               
               Cow position:chr15:21894441-21894138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):109, 13

               
               
               Conread position:16-196
               
               
               Cow position:chr15:6970601-6970419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):108, 91

               
               
               Conread position:18-284
               
               
               Cow position:chr15:9135358-9135639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):106, 89

               
               
               Conread position:20-265
               
               
               Cow position:chr15:7319903-7320165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:21-268
               
               
               Cow position:chr15:16485579-16485842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):103, 86

               
               
               Conread position:22-258
               
               
               Cow position:chr15:24993888-24994139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):102, 85

               
               
               Conread position:23-265
               
               
               Cow position:chr15:21695556-21695818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):101, 85

               
               
               Conread position:29-268
               
               
               Cow position:chr15:21913757-21913501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:30-268
               
               
               Cow position:chr15:22812135-22811881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):94, 77

               
               
               Conread position:30-298
               
               
               Cow position:chr15:2969158-2968881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):94, 66

               
               
               Conread position:34-188
               
               
               Cow position:chr15:38846693-38846537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):90, 76

               
               
               Conread position:35-268
               
               
               Cow position:chr15:6226591-6226841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):89, 43

               
               
               Conread position:35-268
               
               
               Cow position:chr15:28924168-28924413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):156, 72

               
               
               Conread position:38-268
               
               
               Cow position:chr15:33258637-33258391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):86, 69

               
               
               Conread position:38-303
               
               
               Cow position:chr15:53281573-53281310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):79, 69

               
               
               Conread position:41-265
               
               
               Cow position:chr15:29968811-29968568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):83, 57

               
               
               Conread position:41-268
               
               
               Cow position:chr15:287874-287635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):83, 67

               
               
               Conread position:41-268
               
               
               Cow position:chr15:4918461-4918702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):83, 69

               
               
               Conread position:41-268
               
               
               Cow position:chr15:42940550-42940793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):83, 66

               
               
               Conread position:42-268
               
               
               Cow position:chr15:22545263-22545021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):88, 65

               
               
               Conread position:43-188
               
               
               Cow position:chr15:7237269-7237414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):84, 74

               
               
               Conread position:51-258
               
               
               Cow position:chr15:43827188-43827410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):71, 59

               
               
               Conread position:51-268
               
               
               Cow position:chr15:3720024-3719791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):79, 56

               
               
               Conread position:57-268
               
               
               Cow position:chr15:38644592-38644367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):67, 50

               
               
               Conread position:57-270
               
               
               Cow position:chr15:36643308-36643539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:67-268
               
               
               Cow position:chr15:5692283-5692067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:78-265
               
               
               Cow position:chr15:276305-276109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):46, 30

               
               
               Conread position:88-268
               
               
               Cow position:chr15:33526028-33525835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:1-141
               
               
               Cow position:chr16:45157988-45157845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-142
               
               
               Cow position:chr16:45753953-45753809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:1-170
               
               
               Cow position:chr16:31426034-31426205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):123, 54

               
               
               Conread position:1-184
               
               
               Cow position:chr16:33711820-33712006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-186
               
               
               Cow position:chr16:21721372-21721186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-186
               
               
               Cow position:chr16:22805113-22804936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1-186
               
               
               Cow position:chr16:51235226-51235044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:1-186
               
               
               Cow position:chr16:55782957-55783144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-187
               
               
               Cow position:chr16:53409797-53409614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1-188
               
               
               Cow position:chr16:7998129-7997940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-188
               
               
               Cow position:chr16:20204962-20205151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-188
               
               
               Cow position:chr16:31122804-31122615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:151
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-188
               
               
               Cow position:chr16:42752327-42752519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):123, 29

               
               
               Conread position:1-188
               
               
               Cow position:chr16:53621860-53621671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):122, 18

               
               
               Conread position:1-188
               
               
               Cow position:chr16:56913259-56913073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-189
               
               
               Cow position:chr16:54287332-54287515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:1-196
               
               
               Cow position:chr16:7075359-7075555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:158
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:1-197
               
               
               Cow position:chr16:32327115-32327308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):123, 25

               
               
               Conread position:1-249
               
               
               Cow position:chr16:31543736-31544008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:1-249
               
               
               Cow position:chr16:41895809-41896065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-250
               
               
               Cow position:chr16:4461346-4461081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):82, 75

               
               
               Conread position:1-256
               
               
               Cow position:chr16:935994-935741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):124, 40

               
               
               Conread position:1-258
               
               
               Cow position:chr16:14241793-14242073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:1-258
               
               
               Cow position:chr16:20259875-20260152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):124, 151

               
               
               Conread position:1-258
               
               
               Cow position:chr16:23563586-23563865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):41, 107

               
               
               Conread position:1-258
               
               
               Cow position:chr16:37924712-37924439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-258
               
               
               Cow position:chr16:47242405-47242678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-259
               
               
               Cow position:chr16:6711822-6712095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1-259
               
               
               Cow position:chr16:20234648-20234374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):122, 97

               
               
               Conread position:1-259
               
               
               Cow position:chr16:22124718-22124444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-260
               
               
               Cow position:chr16:3338360-3338635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):124, 106

               
               
               Conread position:1-260
               
               
               Cow position:chr16:9212010-9212283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-260
               
               
               Cow position:chr16:42219720-42219448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):118, 65

               
               
               Conread position:1-262
               
               
               Cow position:chr16:53267168-53267454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):28, 39

               
               
               Conread position:1-263
               
               
               Cow position:chr16:3597052-3596774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-263
               
               
               Cow position:chr16:19409373-19409097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):83, 27

               
               
               Conread position:1-263
               
               
               Cow position:chr16:33704256-33704537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-263
               
               
               Cow position:chr16:39343850-39344124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):67, 60

               
               
               Conread position:1-264
               
               
               Cow position:chr16:600394-600674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):123, 49

               
               
               Conread position:1-264
               
               
               Cow position:chr16:825452-825731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr16:5345717-5345440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr16:15979396-15979116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):121, 107

               
               
               Conread position:1-264
               
               
               Cow position:chr16:17143256-17143534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1-264
               
               
               Cow position:chr16:25454496-25454217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1-264
               
               
               Cow position:chr16:40561676-40561955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr16:41576491-41576770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr16:2223950-2223676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):106, 46

               
               
               Conread position:1-265
               
               
               Cow position:chr16:3148059-3147780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1-265
               
               
               Cow position:chr16:5963267-5962988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr16:7048324-7048041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:1-265
               
               
               Cow position:chr16:7457006-7456736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-265
               
               
               Cow position:chr16:9736375-9736100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):124, 28

               
               
               Conread position:1-265
               
               
               Cow position:chr16:13421944-13421664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1-265
               
               
               Cow position:chr16:15363204-15363483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:206
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr16:16265648-16265367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-265
               
               
               Cow position:chr16:18678648-18678927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr16:22918947-22919221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):189, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr16:33133039-33133318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-265
               
               
               Cow position:chr16:39033370-39033089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):82, 75

               
               
               Conread position:1-265
               
               
               Cow position:chr16:42218243-42217963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):35, 21

               
               
               Conread position:1-265
               
               
               Cow position:chr16:42745502-42745220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):32, 110

               
               
               Conread position:1-265
               
               
               Cow position:chr16:44676336-44676616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):49, 107

               
               
               Conread position:1-265
               
               
               Cow position:chr16:45534435-45534714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):136, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr16:46552256-46552537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 107

               
               
               Conread position:1-265
               
               
               Cow position:chr16:49449896-49449616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr16:55043103-55042823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-266
               
               
               Cow position:chr16:47558539-47558828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-267
               
               
               Cow position:chr16:23066118-23066400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):123, 60

               
               
               Conread position:1-267
               
               
               Cow position:chr16:23472203-23472475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr16:35265-35546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):123, 99

               
               
               Conread position:1-268
               
               
               Cow position:chr16:418073-418361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):61, 119

               
               
               Conread position:1-268
               
               
               Cow position:chr16:659541-659827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr16:1563405-1563123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr16:2426121-2425851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:200
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):124, 105

               
               
               Conread position:1-268
               
               
               Cow position:chr16:2724242-2723960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):113, 166

               
               
               Conread position:1-268
               
               
               Cow position:chr16:2962875-2962592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr16:3012096-3012379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr16:3332872-3333158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):34, 109

               
               
               Conread position:1-268
               
               
               Cow position:chr16:4722460-4722743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr16:4972575-4972292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):123, 109

               
               
               Conread position:1-268
               
               
               Cow position:chr16:5435807-5436089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):130, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr16:5488853-5489136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr16:5666080-5666361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):123, 67

               
               
               Conread position:1-268
               
               
               Cow position:chr16:6901894-6902175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):129, 32

               
               
               Conread position:1-268
               
               
               Cow position:chr16:7385747-7386030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr16:7467590-7467875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):84, 65

               
               
               Conread position:1-268
               
               
               Cow position:chr16:7917252-7917535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr16:8807634-8807357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):190, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr16:8813123-8812840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr16:10441220-10441504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):67, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr16:10866738-10867018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr16:11100344-11100062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):94, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr16:11632862-11632579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr16:12534986-12534704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr16:13330485-13330202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr16:13989440-13989719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):123, 41

               
               
               Conread position:1-268
               
               
               Cow position:chr16:14351475-14351194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):112, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr16:15188037-15188320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr16:15312263-15312553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):75, 113

               
               
               Conread position:1-268
               
               
               Cow position:chr16:15485772-15486055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr16:15570842-15571125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:207
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr16:16540379-16540662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr16:16567079-16567362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr16:18978164-18978448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):98, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr16:19082028-19082311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr16:19757337-19757053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr16:20734297-20734014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr16:22825197-22824917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 80

               
               
               Conread position:1-268
               
               
               Cow position:chr16:23146909-23146630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr16:23533019-23532736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr16:23654231-23654514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr16:23872196-23871919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):115, 36

               
               
               Conread position:1-268
               
               
               Cow position:chr16:23986295-23986567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):187, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr16:24209416-24209135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr16:24407894-24408178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):129, 175

               
               
               Conread position:1-268
               
               
               Cow position:chr16:24426953-24427236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr16:25254445-25254728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr16:25444858-25445141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr16:26389464-26389743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):123, 69

               
               
               Conread position:1-268
               
               
               Cow position:chr16:26627733-26628016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr16:27027780-27028063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr16:28468141-28467858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr16:29107162-29106882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):129, 49

               
               
               Conread position:1-268
               
               
               Cow position:chr16:30311652-30311376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):123, 40

               
               
               Conread position:1-268
               
               
               Cow position:chr16:31558344-31558625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):33, 96

               
               
               Conread position:1-268
               
               
               Cow position:chr16:35342519-35342234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:212
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):43, 108

               
               
               Conread position:1-268
               
               
               Cow position:chr16:35443566-35443283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr16:37445443-37445161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:205
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr16:39646010-39646293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr16:39788022-39787738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):123, 175

               
               
               Conread position:1-268
               
               
               Cow position:chr16:40293188-40292901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr16:42849197-42848914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr16:42970480-42970198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-268
               
               
               Cow position:chr16:43563302-43563587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr16:43894281-43893999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr16:44229228-44228946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-268
               
               
               Cow position:chr16:45562657-45562933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):189, 105

               
               
               Conread position:1-268
               
               
               Cow position:chr16:45731921-45731639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):21, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr16:46101637-46101358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):113, 35

               
               
               Conread position:1-268
               
               
               Cow position:chr16:46385566-46385284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):123, 88

               
               
               Conread position:1-268
               
               
               Cow position:chr16:46555404-46555687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr16:46654602-46654884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr16:46752826-46752546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 31

               
               
               Conread position:1-268
               
               
               Cow position:chr16:48087420-48087137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):21, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr16:48411626-48411909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr16:48519907-48520190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr16:49768767-49768484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):82, 75

               
               
               Conread position:1-268
               
               
               Cow position:chr16:50453083-50453366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):124, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr16:50712457-50712174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr16:53225350-53225072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):128, 34

               
               
               Conread position:1-268
               
               
               Cow position:chr16:54083157-54083440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr16:54231371-54231086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr16:54322428-54322144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):82, 75

               
               
               Conread position:1-268
               
               
               Cow position:chr16:56149759-56150046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:217
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):8, 28

               
               
               Conread position:1-269
               
               
               Cow position:chr16:2480177-2479894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):25, 8

               
               
               Conread position:1-269
               
               
               Cow position:chr16:3820614-3820898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):35, 26

               
               
               Conread position:1-269
               
               
               Cow position:chr16:6379657-6379376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):123, 71

               
               
               Conread position:1-269
               
               
               Cow position:chr16:8651808-8652091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):123, 75

               
               
               Conread position:1-269
               
               
               Cow position:chr16:16177270-16177550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):123, 109

               
               
               Conread position:1-269
               
               
               Cow position:chr16:24240419-24240136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:207
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1-269
               
               
               Cow position:chr16:28206129-28205853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):178, 35

               
               
               Conread position:1-269
               
               
               Cow position:chr16:31978739-31978454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 107

               
               
               Conread position:1-269
               
               
               Cow position:chr16:43513023-43513301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):124, 64

               
               
               Conread position:1-269
               
               
               Cow position:chr16:50190140-50189854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):67, 176

               
               
               Conread position:1-269
               
               
               Cow position:chr16:53509538-53509254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr16:53612727-53613015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr16:55309097-55308801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):33, 39

               
               
               Conread position:1-270
               
               
               Cow position:chr16:8620714-8620985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):135, 32

               
               
               Conread position:1-270
               
               
               Cow position:chr16:14662141-14661856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):82, 75

               
               
               Conread position:1-270
               
               
               Cow position:chr16:19062816-19063102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:210
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-270
               
               
               Cow position:chr16:26141829-26142113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):110, 35

               
               
               Conread position:1-274
               
               
               Cow position:chr16:30638781-30639078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):33, 39

               
               
               Conread position:1-276
               
               
               Cow position:chr16:35187700-35187995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):121, 20

               
               
               Conread position:1-277
               
               
               Cow position:chr16:4080531-4080827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):35, 82

               
               
               Conread position:1-281
               
               
               Cow position:chr16:31585521-31585224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:215
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-282
               
               
               Cow position:chr16:13713436-13713144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):35, 24

               
               
               Conread position:1-284
               
               
               Cow position:chr16:15255498-15255199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 18

               
               
               Conread position:1-284
               
               
               Cow position:chr16:25344957-25345256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):113, 53

               
               
               Conread position:1-284
               
               
               Cow position:chr16:45703738-45703437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):84, 98

               
               
               Conread position:1-290
               
               
               Cow position:chr16:45263905-45263595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):121, 289

               
               
               Conread position:1-295
               
               
               Cow position:chr16:22868748-22868446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):189, 107

               
               
               Conread position:1-296
               
               
               Cow position:chr16:54226340-54226030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):38, 107

               
               
               Conread position:1-301
               
               
               Cow position:chr16:8934440-8934143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):16, 106

               
               
               Conread position:1-301
               
               
               Cow position:chr16:25483814-25484107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):188, 35

               
               
               Conread position:1-304
               
               
               Cow position:chr16:37453350-37453034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-305
               
               
               Cow position:chr16:46029349-46029672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):64, 111

               
               
               Conread position:1-306
               
               
               Cow position:chr16:14758167-14758485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:225
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):128, 35

               
               
               Conread position:1-306
               
               
               Cow position:chr16:43813530-43813856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):122, 99

               
               
               Conread position:1-306
               
               
               Cow position:chr16:49253286-49252967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:232
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):122, 38

               
               
               Conread position:2-188
               
               
               Cow position:chr16:42254069-42253881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-262
               
               
               Cow position:chr16:237700-237972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):122, 63

               
               
               Conread position:2-265
               
               
               Cow position:chr16:29158583-29158862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 105

               
               
               Conread position:2-268
               
               
               Cow position:chr16:5350525-5350243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-268
               
               
               Cow position:chr16:8077194-8076932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):169, 79

               
               
               Conread position:2-268
               
               
               Cow position:chr16:10202951-10202671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):122, 34

               
               
               Conread position:2-268
               
               
               Cow position:chr16:14722289-14722009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-268
               
               
               Cow position:chr16:49126732-49126450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-270
               
               
               Cow position:chr16:49515800-49515518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):122, 26

               
               
               Conread position:2-276
               
               
               Cow position:chr16:3111609-3111889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-284
               
               
               Cow position:chr16:26500613-26500913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):92, 110

               
               
               Conread position:3-183
               
               
               Cow position:chr16:30516443-30516257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):119, 104

               
               
               Conread position:3-262
               
               
               Cow position:chr16:4712353-4712628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:3-265
               
               
               Cow position:chr16:24128154-24128431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:208
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-268
               
               
               Cow position:chr16:13697960-13698241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):121, 19

               
               
               Conread position:3-268
               
               
               Cow position:chr16:49094120-49093841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):124, 105

               
               
               Conread position:3-268
               
               
               Cow position:chr16:51641235-51641516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):120, 104

               
               
               Conread position:3-269
               
               
               Cow position:chr16:12087194-12086920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):187, 60

               
               
               Conread position:3-269
               
               
               Cow position:chr16:24215864-24215581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):59, 105

               
               
               Conread position:3-277
               
               
               Cow position:chr16:15369959-15370248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):65, 51

               
               
               Conread position:4-262
               
               
               Cow position:chr16:53770193-53769920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):120, 94

               
               
               Conread position:4-265
               
               
               Cow position:chr16:28431813-28431536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):120, 103

               
               
               Conread position:4-268
               
               
               Cow position:chr16:11130601-11130332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):82, 105

               
               
               Conread position:4-268
               
               
               Cow position:chr16:15824985-15824705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):84, 107

               
               
               Conread position:5-268
               
               
               Cow position:chr16:26176292-26176571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):120, 102

               
               
               Conread position:5-268
               
               
               Cow position:chr16:28292333-28292612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:207
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):119, 102

               
               
               Conread position:6-247
               
               
               Cow position:chr16:48424456-48424717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):84, 106

               
               
               Conread position:6-268
               
               
               Cow position:chr16:7673395-7673118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):118, 49

               
               
               Conread position:8-285
               
               
               Cow position:chr16:41163770-41163476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):116, 149

               
               
               Conread position:9-269
               
               
               Cow position:chr16:18205420-18205695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:208
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):115, 40

               
               
               Conread position:10-268
               
               
               Cow position:chr16:7549219-7549496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):114, 97

               
               
               Conread position:12-298
               
               
               Cow position:chr16:14105980-14106280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):62, 66

               
               
               Conread position:15-269
               
               
               Cow position:chr16:24875980-24875707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:15-269
               
               
               Cow position:chr16:26339904-26340169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):160, 93

               
               
               Conread position:15-273
               
               
               Cow position:chr16:4699491-4699225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):21, 208

               
               
               Conread position:16-163
               
               
               Cow position:chr16:11054964-11055108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:16-250
               
               
               Cow position:chr16:17948695-17948438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):17, 23

               
               
               Conread position:16-268
               
               
               Cow position:chr16:17952415-17952683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):108, 91

               
               
               Conread position:17-283
               
               
               Cow position:chr16:18758371-18758093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):110, 11

               
               
               Conread position:18-268
               
               
               Cow position:chr16:14611144-14611411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):69, 58

               
               
               Conread position:18-294
               
               
               Cow position:chr16:8367687-8367395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):106, 228

               
               
               Conread position:20-265
               
               
               Cow position:chr16:16057693-16057422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):45, 62

               
               
               Conread position:20-268
               
               
               Cow position:chr16:7022204-7021940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):104, 87

               
               
               Conread position:21-263
               
               
               Cow position:chr16:40333851-40333593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):100, 86

               
               
               Conread position:21-267
               
               
               Cow position:chr16:45139144-45139400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):169, 86

               
               
               Conread position:22-255
               
               
               Cow position:chr16:674975-675222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):102, 44

               
               
               Conread position:22-268
               
               
               Cow position:chr16:50905937-50906202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):102, 85

               
               
               Conread position:22-285
               
               
               Cow position:chr16:11105026-11105301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):102, 85

               
               
               Conread position:23-268
               
               
               Cow position:chr16:51599129-51598869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):101, 84

               
               
               Conread position:23-280
               
               
               Cow position:chr16:5653988-5654261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):101, 84

               
               
               Conread position:27-188
               
               
               Cow position:chr16:56813490-56813328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):103, 26

               
               
               Conread position:27-264
               
               
               Cow position:chr16:27706739-27706489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):97, 40

               
               
               Conread position:29-265
               
               
               Cow position:chr16:3633594-3633846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):95, 81

               
               
               Conread position:29-268
               
               
               Cow position:chr16:19643375-19643628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):17, 88

               
               
               Conread position:30-306
               
               
               Cow position:chr16:11619210-11619500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:215
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):94, 77

               
               
               Conread position:35-268
               
               
               Cow position:chr16:39474653-39474405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):89, 72

               
               
               Conread position:35-268
               
               
               Cow position:chr16:42161911-42161661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):33, 73

               
               
               Conread position:35-270
               
               
               Cow position:chr16:56589701-56589952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):89, 72

               
               
               Conread position:36-265
               
               
               Cow position:chr16:32780868-32781120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):88, 71

               
               
               Conread position:40-268
               
               
               Cow position:chr16:42379044-42379287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):84, 67

               
               
               Conread position:41-226
               
               
               Cow position:chr16:2789999-2790197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:41-268
               
               
               Cow position:chr16:15477671-15477913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):83, 66

               
               
               Conread position:41-268
               
               
               Cow position:chr16:23475583-23475826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):83, 66

               
               
               Conread position:41-281
               
               
               Cow position:chr16:11568617-11568364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):83, 35

               
               
               Conread position:42-257
               
               
               Cow position:chr16:43126675-43126446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):81, 65

               
               
               Conread position:43-265
               
               
               Cow position:chr16:39394079-39394307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):81, 64

               
               
               Conread position:44-268
               
               
               Cow position:chr16:24228856-24228617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):85, 63

               
               
               Conread position:46-196
               
               
               Cow position:chr16:1549648-1549495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:46-255
               
               
               Cow position:chr16:15747108-15747335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):76, 107

               
               
               Conread position:46-268
               
               
               Cow position:chr16:34141144-34141380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):74, 60

               
               
               Conread position:46-269
               
               
               Cow position:chr16:51710625-51710394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):78, 61

               
               
               Conread position:50-190
               
               
               Cow position:chr16:49846841-49846983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):74, 58

               
               
               Conread position:50-282
               
               
               Cow position:chr16:29036908-29037152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):74, 57

               
               
               Conread position:51-268
               
               
               Cow position:chr16:29678139-29677906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):68, 56

               
               
               Conread position:52-265
               
               
               Cow position:chr16:48398742-48398513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):71, 55

               
               
               Conread position:64-268
               
               
               Cow position:chr16:44098129-44097909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):60, 43

               
               
               Conread position:67-261
               
               
               Cow position:chr16:45609502-45609712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):57, 41

               
               
               Conread position:67-268
               
               
               Cow position:chr16:33177167-33177382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):57, 42

               
               
               Conread position:68-265
               
               
               Cow position:chr16:3288550-3288763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):57, 39

               
               
               Conread position:209-303
               
               
               Cow position:chr16:8959425-8959330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:81
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:1-178
               
               
               Cow position:chr17:4457781-4457959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-182
               
               
               Cow position:chr17:10270967-10271158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):62, 114

               
               
               Conread position:1-185
               
               
               Cow position:chr17:11083598-11083412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-186
               
               
               Cow position:chr17:2177516-2177701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):123, 29

               
               
               Conread position:1-186
               
               
               Cow position:chr17:5899031-5898848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):123, 38

               
               
               Conread position:1-186
               
               
               Cow position:chr17:18828600-18828414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):111, 105

               
               
               Conread position:1-186
               
               
               Cow position:chr17:21115714-21115526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:1-188
               
               
               Cow position:chr17:3352879-3353068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-188
               
               
               Cow position:chr17:3388354-3388540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-188
               
               
               Cow position:chr17:24618317-24618507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-188
               
               
               Cow position:chr17:26803323-26803136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):123, 18

               
               
               Conread position:1-188
               
               
               Cow position:chr17:29471972-29472162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-188
               
               
               Cow position:chr17:29810144-29810332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):123, 95

               
               
               Conread position:1-188
               
               
               Cow position:chr17:30664768-30664955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:152
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):123, 75

               
               
               Conread position:1-189
               
               
               Cow position:chr17:12326380-12326189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):21, 107

               
               
               Conread position:1-189
               
               
               Cow position:chr17:13424800-13424990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-192
               
               
               Cow position:chr17:15351592-15351785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):16, 73

               
               
               Conread position:1-196
               
               
               Cow position:chr17:18721081-18720888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1-256
               
               
               Cow position:chr17:1568680-1568407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):11, 80

               
               
               Conread position:1-256
               
               
               Cow position:chr17:24334178-24334449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-256
               
               
               Cow position:chr17:31232448-31232178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):15, 36

               
               
               Conread position:1-257
               
               
               Cow position:chr17:18201266-18201540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):78, 108

               
               
               Conread position:1-258
               
               
               Cow position:chr17:21666541-21666814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-260
               
               
               Cow position:chr17:26829202-26828929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:1-260
               
               
               Cow position:chr17:36197112-36197387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:205
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-261
               
               
               Cow position:chr17:18884834-18884558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:210
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):83, 75

               
               
               Conread position:1-261
               
               
               Cow position:chr17:21960196-21959912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):126, 253

               
               
               Conread position:1-261
               
               
               Cow position:chr17:32651107-32651383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:209
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):9, 107

               
               
               Conread position:1-262
               
               
               Cow position:chr17:13940826-13940554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):188, 106

               
               
               Conread position:1-263
               
               
               Cow position:chr17:13144186-13143913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):122, 75

               
               
               Conread position:1-263
               
               
               Cow position:chr17:21874826-21874547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:1-263
               
               
               Cow position:chr17:30539758-30539480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:205
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-263
               
               
               Cow position:chr17:33272170-33271905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):123, 95

               
               
               Conread position:1-264
               
               
               Cow position:chr17:19214868-19214589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-264
               
               
               Cow position:chr17:25740434-25740720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):121, 144

               
               
               Conread position:1-264
               
               
               Cow position:chr17:35287849-35287573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):126, 75

               
               
               Conread position:1-264
               
               
               Cow position:chr17:36504535-36504257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):122, 60

               
               
               Conread position:1-265
               
               
               Cow position:chr17:184689-184968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):123, 20

               
               
               Conread position:1-265
               
               
               Cow position:chr17:241825-242115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-265
               
               
               Cow position:chr17:3197094-3196815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):106, 84

               
               
               Conread position:1-265
               
               
               Cow position:chr17:6263396-6263679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:1-265
               
               
               Cow position:chr17:11913209-11912929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):123, 99

               
               
               Conread position:1-265
               
               
               Cow position:chr17:15328820-15329100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr17:24553497-24553775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:206
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):123, 95

               
               
               Conread position:1-265
               
               
               Cow position:chr17:25077334-25077054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr17:31986659-31986379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr17:33040064-33039784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr17:36331464-36331195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):123, 70

               
               
               Conread position:1-265
               
               
               Cow position:chr17:41029439-41029723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):84, 20

               
               
               Conread position:1-265
               
               
               Cow position:chr17:43527472-43527752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):123, 109

               
               
               Conread position:1-267
               
               
               Cow position:chr17:6623175-6623452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-267
               
               
               Cow position:chr17:14232071-14231779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr17:148450-148731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr17:730957-730675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr17:2201839-2202122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr17:2265730-2266013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr17:3470922-3471189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr17:4107521-4107244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr17:4123257-4122979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr17:4602048-4601769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr17:5281809-5281527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr17:5549009-5548726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr17:5896420-5896138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):123, 52

               
               
               Conread position:1-268
               
               
               Cow position:chr17:6072069-6072352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr17:6956181-6956464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr17:8223246-8223528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):123, 26

               
               
               Conread position:1-268
               
               
               Cow position:chr17:8993799-8993516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr17:10445696-10445978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):123, 14

               
               
               Conread position:1-268
               
               
               Cow position:chr17:11385996-11386290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):92, 118

               
               
               Conread position:1-268
               
               
               Cow position:chr17:13725804-13726086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):123, 56

               
               
               Conread position:1-268
               
               
               Cow position:chr17:14026410-14026141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:202
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):122, 71

               
               
               Conread position:1-268
               
               
               Cow position:chr17:14050690-14050418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):187, 78

               
               
               Conread position:1-268
               
               
               Cow position:chr17:14249544-14249259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr17:15559114-15559397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr17:15894816-15894533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr17:16446940-16446655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:212
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):88, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr17:16875896-16876179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):128, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr17:17179544-17179814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):187, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr17:17493833-17494115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):123, 48

               
               
               Conread position:1-268
               
               
               Cow position:chr17:18099535-18099264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr17:19266916-19266632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr17:19998633-19998909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):61, 94

               
               
               Conread position:1-268
               
               
               Cow position:chr17:20226143-20226424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr17:20232240-20231957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr17:20269107-20269386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):122, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr17:20271859-20271582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):187, 49

               
               
               Conread position:1-268
               
               
               Cow position:chr17:20546679-20546962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr17:20800307-20800590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr17:21767433-21767705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:207
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr17:21973641-21973357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):61, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr17:25145821-25145536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):124, 109

               
               
               Conread position:1-268
               
               
               Cow position:chr17:27791253-27790970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr17:28024349-28024067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr17:28359318-28359607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:214
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 79

               
               
               Conread position:1-268
               
               
               Cow position:chr17:28830781-28831058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):123, 44

               
               
               Conread position:1-268
               
               
               Cow position:chr17:29074850-29074567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr17:29715696-29715412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):114, 32

               
               
               Conread position:1-268
               
               
               Cow position:chr17:33059066-33058784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):123, 95

               
               
               Conread position:1-268
               
               
               Cow position:chr17:33289160-33288880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):189, 114

               
               
               Conread position:1-268
               
               
               Cow position:chr17:34208622-34208341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 20

               
               
               Conread position:1-268
               
               
               Cow position:chr17:34391070-34390787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-268
               
               
               Cow position:chr17:36284809-36285086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr17:38832550-38832816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):123, 61

               
               
               Conread position:1-268
               
               
               Cow position:chr17:39735674-39735960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):123, 67

               
               
               Conread position:1-268
               
               
               Cow position:chr17:40802304-40802586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):101, 41

               
               
               Conread position:1-268
               
               
               Cow position:chr17:42843543-42843826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr17:43539545-43539828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr17:43992026-43992309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr17:44030085-44030367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):123, 57

               
               
               Conread position:1-269
               
               
               Cow position:chr17:979644-979359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-269
               
               
               Cow position:chr17:3131550-3131835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 27

               
               
               Conread position:1-269
               
               
               Cow position:chr17:8450252-8450526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):98, 123

               
               
               Conread position:1-269
               
               
               Cow position:chr17:11471399-11471679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1-269
               
               
               Cow position:chr17:14027881-14027601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):89, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr17:16854566-16854284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr17:16869761-16869502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):123, 49

               
               
               Conread position:1-269
               
               
               Cow position:chr17:17221839-17222119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):123, 12

               
               
               Conread position:1-269
               
               
               Cow position:chr17:20233727-20234002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):198, 99

               
               
               Conread position:1-269
               
               
               Cow position:chr17:23101722-23101432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):123, 20

               
               
               Conread position:1-269
               
               
               Cow position:chr17:23884275-23883993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):123, 20

               
               
               Conread position:1-269
               
               
               Cow position:chr17:29951043-29951318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):123, 35

               
               
               Conread position:1-269
               
               
               Cow position:chr17:30727765-30728048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr17:36790600-36790882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr17:40811258-40811543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-270
               
               
               Cow position:chr17:30984-31269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:1-270
               
               
               Cow position:chr17:12289927-12289643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):124, 52

               
               
               Conread position:1-270
               
               
               Cow position:chr17:20129170-20129454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 110

               
               
               Conread position:1-272
               
               
               Cow position:chr17:10494397-10494109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-277
               
               
               Cow position:chr17:20848031-20848318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):123, 14

               
               
               Conread position:1-282
               
               
               Cow position:chr17:2584193-2584489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):85, 75

               
               
               Conread position:1-282
               
               
               Cow position:chr17:6565970-6566265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:221
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-284
               
               
               Cow position:chr17:22774881-22775182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-284
               
               
               Cow position:chr17:25188778-25189073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):63, 27

               
               
               Conread position:1-287
               
               
               Cow position:chr17:20814861-20815153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):122, 37

               
               
               Conread position:1-291
               
               
               Cow position:chr17:1708212-1707912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:1-303
               
               
               Cow position:chr17:40741100-40741417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:2-188
               
               
               Cow position:chr17:50571-50384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):82, 71

               
               
               Conread position:2-264
               
               
               Cow position:chr17:34317219-34316947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):122, 26

               
               
               Conread position:2-265
               
               
               Cow position:chr17:6082039-6082314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:2-268
               
               
               Cow position:chr17:7396751-7396469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-268
               
               
               Cow position:chr17:20358373-20358652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 45

               
               
               Conread position:2-268
               
               
               Cow position:chr17:24026443-24026160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):22, 106

               
               
               Conread position:2-268
               
               
               Cow position:chr17:24549663-24549944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):122, 17

               
               
               Conread position:2-268
               
               
               Cow position:chr17:40771317-40771602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:211
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):122, 96

               
               
               Conread position:2-269
               
               
               Cow position:chr17:3466075-3466359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):83, 106

               
               
               Conread position:2-270
               
               
               Cow position:chr17:42258399-42258682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):115, 37

               
               
               Conread position:3-265
               
               
               Cow position:chr17:9905889-9906171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):121, 97

               
               
               Conread position:3-268
               
               
               Cow position:chr17:4635114-4634842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:200
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):27, 105

               
               
               Conread position:3-268
               
               
               Cow position:chr17:15854295-15854564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):122, 25

               
               
               Conread position:3-279
               
               
               Cow position:chr17:32280380-32280091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:215
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):121, 44

               
               
               Conread position:3-289
               
               
               Cow position:chr17:44233590-44233290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:219
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:4-277
               
               
               Cow position:chr17:40405801-40406091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):120, 103

               
               
               Conread position:4-284
               
               
               Cow position:chr17:27305659-27305954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:219
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):120, 103

               
               
               Conread position:5-268
               
               
               Cow position:chr17:38992298-38992577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):117, 144

               
               
               Conread position:7-265
               
               
               Cow position:chr17:4155103-4155377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):117, 100

               
               
               Conread position:11-264
               
               
               Cow position:chr17:9900629-9900898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):113, 96

               
               
               Conread position:11-269
               
               
               Cow position:chr17:27978656-27978932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):113, 96

               
               
               Conread position:11-302
               
               
               Cow position:chr17:35180303-35180612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):112, 96

               
               
               Conread position:12-262
               
               
               Cow position:chr17:30712542-30712808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):112, 95

               
               
               Conread position:12-301
               
               
               Cow position:chr17:39485055-39485352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):111, 44

               
               
               Conread position:15-265
               
               
               Cow position:chr17:39783474-39783737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):110, 63

               
               
               Conread position:15-268
               
               
               Cow position:chr17:14901430-14901699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:16-188
               
               
               Cow position:chr17:21924137-21923949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):85, 14

               
               
               Conread position:16-188
               
               
               Cow position:chr17:35223055-35223229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):108, 91

               
               
               Conread position:16-267
               
               
               Cow position:chr17:9660772-9660504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):108, 92

               
               
               Conread position:16-268
               
               
               Cow position:chr17:25341028-25340755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):108, 91

               
               
               Conread position:18-270
               
               
               Cow position:chr17:20093609-20093348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):180, 31

               
               
               Conread position:20-268
               
               
               Cow position:chr17:10529235-10528967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:22-284
               
               
               Cow position:chr17:1481866-1482142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):91, 124

               
               
               Conread position:23-264
               
               
               Cow position:chr17:5361544-5361290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):101, 84

               
               
               Conread position:23-265
               
               
               Cow position:chr17:32472314-32472059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):101, 13

               
               
               Conread position:23-269
               
               
               Cow position:chr17:25140765-25141027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):101, 84

               
               
               Conread position:23-284
               
               
               Cow position:chr17:3386811-3387087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):21, 45

               
               
               Conread position:24-264
               
               
               Cow position:chr17:29079888-29080144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):38, 84

               
               
               Conread position:24-268
               
               
               Cow position:chr17:27986321-27986062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):100, 34

               
               
               Conread position:25-277
               
               
               Cow position:chr17:22135014-22135283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:29-268
               
               
               Cow position:chr17:4177105-4176849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):19, 79

               
               
               Conread position:29-268
               
               
               Cow position:chr17:14003349-14003603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):95, 78

               
               
               Conread position:33-270
               
               
               Cow position:chr17:21871213-21870962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):91, 74

               
               
               Conread position:36-269
               
               
               Cow position:chr17:35184558-35184809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:40-268
               
               
               Cow position:chr17:23337483-23337240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):84, 17

               
               
               Conread position:44-268
               
               
               Cow position:chr17:17266813-17266573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:45-269
               
               
               Cow position:chr17:33486655-33486895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:46-264
               
               
               Cow position:chr17:25193923-25194156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):84, 28

               
               
               Conread position:47-268
               
               
               Cow position:chr17:32027920-32027688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):77, 38

               
               
               Conread position:48-268
               
               
               Cow position:chr17:21038820-21039052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):76, 33

               
               
               Conread position:50-269
               
               
               Cow position:chr17:10432871-10432649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):74, 57

               
               
               Conread position:52-265
               
               
               Cow position:chr17:32989037-32989264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):70, 56

               
               
               Conread position:52-265
               
               
               Cow position:chr17:32994069-32993842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):70, 56

               
               
               Conread position:58-269
               
               
               Cow position:chr17:7251598-7251817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):66, 50

               
               
               Conread position:59-303
               
               
               Cow position:chr17:6423276-6423539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):65, 48

               
               
               Conread position:60-284
               
               
               Cow position:chr17:23063265-23063504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):64, 47

               
               
               Conread position:62-268
               
               
               Cow position:chr17:30529976-30529762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):72, 45

               
               
               Conread position:67-268
               
               
               Cow position:chr17:21336139-21335924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):57, 40

               
               
               Conread position:68-265
               
               
               Cow position:chr17:21494942-21495148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):122, 39

               
               
               Conread position:133-303
               
               
               Cow position:chr17:1563244-1563068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:1-164
               
               
               Cow position:chr18:1494707-1494872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:1-180
               
               
               Cow position:chr18:56362291-56362110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-185
               
               
               Cow position:chr18:44262033-44262219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-186
               
               
               Cow position:chr18:32121919-32121732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-187
               
               
               Cow position:chr18:29028587-29028398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:154
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):116, 106

               
               
               Conread position:1-188
               
               
               Cow position:chr18:2853023-2852833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-188
               
               
               Cow position:chr18:6309478-6309665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-188
               
               
               Cow position:chr18:9365308-9365497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-188
               
               
               Cow position:chr18:16471453-16471259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-188
               
               
               Cow position:chr18:27457337-27457147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:152
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):49, 107

               
               
               Conread position:1-188
               
               
               Cow position:chr18:28658491-28658301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:155
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):18, 74

               
               
               Conread position:1-188
               
               
               Cow position:chr18:31712050-31711858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:1-188
               
               
               Cow position:chr18:52792062-52792251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-188
               
               
               Cow position:chr18:55001347-55001166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1-211
               
               
               Cow position:chr18:14479881-14480104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:1-257
               
               
               Cow position:chr18:1859802-1859532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):124, 14

               
               
               Conread position:1-257
               
               
               Cow position:chr18:45478352-45478623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):121, 99

               
               
               Conread position:1-258
               
               
               Cow position:chr18:4496761-4496490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-258
               
               
               Cow position:chr18:22569608-22569336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):122, 72

               
               
               Conread position:1-258
               
               
               Cow position:chr18:29357226-29356947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):35, 261

               
               
               Conread position:1-258
               
               
               Cow position:chr18:43284330-43284060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:1-260
               
               
               Cow position:chr18:37153669-37153394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-261
               
               
               Cow position:chr18:27800115-27799838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):101, 56

               
               
               Conread position:1-261
               
               
               Cow position:chr18:36233108-36232837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):123, 20

               
               
               Conread position:1-262
               
               
               Cow position:chr18:42746994-42747282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):35, 21

               
               
               Conread position:1-263
               
               
               Cow position:chr18:727049-727329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:1-264
               
               
               Cow position:chr18:1144795-1144516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:205
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr18:4315722-4315996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):83, 107

               
               
               Conread position:1-264
               
               
               Cow position:chr18:26822362-26822640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:205
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-264
               
               
               Cow position:chr18:29585847-29585568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1-265
               
               
               Cow position:chr18:6829646-6829365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr18:6878209-6877931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr18:7930721-7930445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-265
               
               
               Cow position:chr18:9089129-9089403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):40, 107

               
               
               Conread position:1-265
               
               
               Cow position:chr18:13292926-13293208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):67, 107

               
               
               Conread position:1-265
               
               
               Cow position:chr18:16226986-16227257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 35

               
               
               Conread position:1-265
               
               
               Cow position:chr18:27194268-27194541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):92, 32

               
               
               Conread position:1-265
               
               
               Cow position:chr18:27833662-27833381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 175

               
               
               Conread position:1-265
               
               
               Cow position:chr18:28929689-28929399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):44, 115

               
               
               Conread position:1-265
               
               
               Cow position:chr18:30248699-30248430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr18:36224199-36224479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-265
               
               
               Cow position:chr18:36907763-36907476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):40, 113

               
               
               Conread position:1-265
               
               
               Cow position:chr18:36912289-36912002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):40, 113

               
               
               Conread position:1-265
               
               
               Cow position:chr18:39002379-39002097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):157, 124

               
               
               Conread position:1-265
               
               
               Cow position:chr18:42966256-42966536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr18:55783008-55782728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-266
               
               
               Cow position:chr18:35443612-35443331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr18:81182-81457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):94, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr18:2609299-2609032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr18:3098890-3098611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):126, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr18:3190509-3190792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr18:4369596-4369325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr18:4432491-4432773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr18:4949977-4950253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):189, 80

               
               
               Conread position:1-268
               
               
               Cow position:chr18:5536735-5537018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr18:6047069-6046782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):122, 113

               
               
               Conread position:1-268
               
               
               Cow position:chr18:6665935-6665655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):110, 73

               
               
               Conread position:1-268
               
               
               Cow position:chr18:6733208-6732925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr18:9974907-9974624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr18:10574471-10574754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr18:11790362-11790633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):123, 87

               
               
               Conread position:1-268
               
               
               Cow position:chr18:12118426-12118144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):123, 99

               
               
               Conread position:1-268
               
               
               Cow position:chr18:16094643-16094924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:209
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr18:16172854-16172570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr18:17002078-17002362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr18:19462045-19462328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr18:22181689-22181405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):121, 150

               
               
               Conread position:1-268
               
               
               Cow position:chr18:22396663-22396379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):119, 92

               
               
               Conread position:1-268
               
               
               Cow position:chr18:23700450-23700168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):82, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr18:23949984-23949709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):123, 59

               
               
               Conread position:1-268
               
               
               Cow position:chr18:25957858-25958141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr18:28292341-28292057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr18:28767792-28768068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):189, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr18:28968524-28968241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr18:29387654-29387928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):35, 110

               
               
               Conread position:1-268
               
               
               Cow position:chr18:29862843-29862561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:1-268
               
               
               Cow position:chr18:30406602-30406319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr18:31139514-31139797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr18:35637578-35637861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr18:35752233-35751953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):88, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr18:36512392-36512676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr18:37691178-37690897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr18:37733454-37733739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):107, 176

               
               
               Conread position:1-268
               
               
               Cow position:chr18:38157784-38157504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):107, 75

               
               
               Conread position:1-268
               
               
               Cow position:chr18:42629129-42629412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr18:43075682-43075963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr18:43430763-43431046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr18:45572518-45572783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:198
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):128, 54

               
               
               Conread position:1-268
               
               
               Cow position:chr18:45886824-45886539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr18:45979130-45979405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):123, 21

               
               
               Conread position:1-268
               
               
               Cow position:chr18:45981257-45981541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):76, 178

               
               
               Conread position:1-268
               
               
               Cow position:chr18:48451087-48451379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):35, 111

               
               
               Conread position:1-268
               
               
               Cow position:chr18:50114523-50114240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr18:51346053-51346336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr18:51601902-51601619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr18:52574868-52575151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr18:52899485-52899768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr18:54033460-54033743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr18:55417747-55418030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr18:56017689-56017406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr18:56165415-56165684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr18:7965693-7965968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:210
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):190, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr18:8967422-8967704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr18:19116040-19115754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:214
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr18:23802785-23803060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr18:25355280-25355564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr18:26306030-26306318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr18:32283293-32283575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):79, 107

               
               
               Conread position:1-269
               
               
               Cow position:chr18:32284812-32285094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):79, 107

               
               
               Conread position:1-269
               
               
               Cow position:chr18:32300957-32301239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):79, 107

               
               
               Conread position:1-269
               
               
               Cow position:chr18:35012887-35012604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr18:40195876-40196160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):120, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr18:51679462-51679171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1-270
               
               
               Cow position:chr18:601750-601467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):129, 26

               
               
               Conread position:1-270
               
               
               Cow position:chr18:47183872-47183582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):121, 146

               
               
               Conread position:1-271
               
               
               Cow position:chr18:23715872-23715581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):119, 106

               
               
               Conread position:1-272
               
               
               Cow position:chr18:51211583-51211871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):40, 83

               
               
               Conread position:1-273
               
               
               Cow position:chr18:33407056-33407328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-275
               
               
               Cow position:chr18:19645594-19645887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):122, 9

               
               
               Conread position:1-283
               
               
               Cow position:chr18:22275622-22275326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:216
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):123, 44

               
               
               Conread position:1-284
               
               
               Cow position:chr18:268631-268332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:219
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-284
               
               
               Cow position:chr18:33272370-33272665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):180, 106

               
               
               Conread position:1-288
               
               
               Cow position:chr18:53962989-53962702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 107

               
               
               Conread position:1-291
               
               
               Cow position:chr18:24685863-24686150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:220
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):42, 72

               
               
               Conread position:1-297
               
               
               Cow position:chr18:51272374-51272059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:211
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:1-305
               
               
               Cow position:chr18:9900315-9900623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:221
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:2-262
               
               
               Cow position:chr18:51692056-51691773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:2-263
               
               
               Cow position:chr18:37024139-37023860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:2-265
               
               
               Cow position:chr18:40141470-40141192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:2-267
               
               
               Cow position:chr18:7649413-7649692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:211
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):122, 13

               
               
               Conread position:2-268
               
               
               Cow position:chr18:1955105-1954823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-268
               
               
               Cow position:chr18:19159542-19159263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:2-268
               
               
               Cow position:chr18:25924135-25924424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):74, 112

               
               
               Conread position:2-268
               
               
               Cow position:chr18:30386239-30385956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):128, 112

               
               
               Conread position:2-274
               
               
               Cow position:chr18:51713297-51713002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:3-154
               
               
               Cow position:chr18:11190833-11190985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:3-268
               
               
               Cow position:chr18:23659138-23658858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 33

               
               
               Conread position:3-268
               
               
               Cow position:chr18:42608909-42608627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-270
               
               
               Cow position:chr18:16155078-16154793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:3-303
               
               
               Cow position:chr18:33851649-33851959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 46

               
               
               Conread position:4-216
               
               
               Cow position:chr18:21987276-21987499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):38, 24

               
               
               Conread position:4-274
               
               
               Cow position:chr18:52595817-52596103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):35, 24

               
               
               Conread position:6-186
               
               
               Cow position:chr18:10516604-10516786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):11, 23

               
               
               Conread position:7-269
               
               
               Cow position:chr18:32860067-32860350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):118, 100

               
               
               Conread position:8-188
               
               
               Cow position:chr18:36770769-36770585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):32, 102

               
               
               Conread position:8-265
               
               
               Cow position:chr18:21204828-21205087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):183, 92

               
               
               Conread position:9-258
               
               
               Cow position:chr18:35057773-35058035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):115, 98

               
               
               Conread position:9-293
               
               
               Cow position:chr18:33274719-33275016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):21, 99

               
               
               Conread position:10-258
               
               
               Cow position:chr18:33756317-33756577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):26, 18

               
               
               Conread position:11-187
               
               
               Cow position:chr18:7968554-7968730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):113, 96

               
               
               Conread position:15-265
               
               
               Cow position:chr18:2271067-2270805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):109, 36

               
               
               Conread position:15-269
               
               
               Cow position:chr18:11680123-11680392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):109, 91

               
               
               Conread position:15-305
               
               
               Cow position:chr18:36186756-36186465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):109, 7

               
               
               Conread position:16-270
               
               
               Cow position:chr18:45104994-45104743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 91

               
               
               Conread position:17-265
               
               
               Cow position:chr18:19760939-19761204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):107, 90

               
               
               Conread position:18-269
               
               
               Cow position:chr18:40758647-40758918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:20-272
               
               
               Cow position:chr18:54031141-54031415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):30, 21

               
               
               Conread position:21-258
               
               
               Cow position:chr18:50082794-50082546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):43, 81

               
               
               Conread position:22-267
               
               
               Cow position:chr18:4556946-4556685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):102, 74

               
               
               Conread position:23-188
               
               
               Cow position:chr18:11262403-11262570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):11, 84

               
               
               Conread position:23-265
               
               
               Cow position:chr18:25206857-25206600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):101, 84

               
               
               Conread position:23-265
               
               
               Cow position:chr18:37002075-37002328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):101, 84

               
               
               Conread position:24-230
               
               
               Cow position:chr18:10107134-10107352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):99, 41

               
               
               Conread position:25-302
               
               
               Cow position:chr18:48291437-48291147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:215
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):99, 82

               
               
               Conread position:27-264
               
               
               Cow position:chr18:28925669-28925415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):9, 81

               
               
               Conread position:28-265
               
               
               Cow position:chr18:33606076-33606329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:29-188
               
               
               Cow position:chr18:29759164-29759325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):95, 78

               
               
               Conread position:30-268
               
               
               Cow position:chr18:21721833-21721579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):85, 77

               
               
               Conread position:31-269
               
               
               Cow position:chr18:42223778-42224036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:32-263
               
               
               Cow position:chr18:55590024-55589779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):91, 74

               
               
               Conread position:33-262
               
               
               Cow position:chr18:24978117-24977881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):90, 6

               
               
               Conread position:33-268
               
               
               Cow position:chr18:51191302-51191052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):91, 74

               
               
               Conread position:35-189
               
               
               Cow position:chr18:54928605-54928445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):18, 76

               
               
               Conread position:35-258
               
               
               Cow position:chr18:19193893-19193654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):89, 75

               
               
               Conread position:35-268
               
               
               Cow position:chr18:13173074-13172824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):89, 72

               
               
               Conread position:35-268
               
               
               Cow position:chr18:25165076-25164832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):89, 72

               
               
               Conread position:35-274
               
               
               Cow position:chr18:3193186-3193440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):92, 61

               
               
               Conread position:35-284
               
               
               Cow position:chr18:35364319-35364053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):89, 141

               
               
               Conread position:37-257
               
               
               Cow position:chr18:23631124-23630885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):87, 70

               
               
               Conread position:41-188
               
               
               Cow position:chr18:4603057-4602908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):83, 73

               
               
               Conread position:42-258
               
               
               Cow position:chr18:30793919-30794146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):82, 65

               
               
               Conread position:42-268
               
               
               Cow position:chr18:6322197-6322440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):82, 134

               
               
               Conread position:54-301
               
               
               Cow position:chr18:38984850-38985110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):136, 53

               
               
               Conread position:57-249
               
               
               Cow position:chr18:32876120-32876328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):67, 50

               
               
               Conread position:61-264
               
               
               Cow position:chr18:10084003-10084222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):62, 46

               
               
               Conread position:61-265
               
               
               Cow position:chr18:26938464-26938683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):53, 37

               
               
               Conread position:61-268
               
               
               Cow position:chr18:51406415-51406194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):47, 193

               
               
               Conread position:67-268
               
               
               Cow position:chr18:43538948-43539165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):57, 40

               
               
               Conread position:70-265
               
               
               Cow position:chr18:12585652-12585442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):54, 36

               
               
               Conread position:71-268
               
               
               Cow position:chr18:4672831-4673028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):53, 36

               
               
               Conread position:78-265
               
               
               Cow position:chr18:39709385-39709588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):46, 29

               
               
               Conread position:83-265
               
               
               Cow position:chr18:9007648-9007847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):40, 24

               
               
               Conread position:98-268
               
               
               Cow position:chr18:5190161-5189978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):91, 10

               
               
               Conread position:110-269
               
               
               Cow position:chr18:11322116-11322291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:125-268
               
               
               Cow position:chr18:7486796-7486953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:126-277
               
               
               Cow position:chr18:45570573-45570735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:1-150
               
               
               Cow position:chr19:11746377-11746226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):122, 46

               
               
               Conread position:1-155
               
               
               Cow position:chr19:31957352-31957195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:1-184
               
               
               Cow position:chr19:53059470-53059280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):73, 114

               
               
               Conread position:1-187
               
               
               Cow position:chr19:42664382-42664194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-188
               
               
               Cow position:chr19:7053884-7053697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):120, 22

               
               
               Conread position:1-188
               
               
               Cow position:chr19:15136900-15137089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-188
               
               
               Cow position:chr19:15720144-15719954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):65, 107

               
               
               Conread position:1-188
               
               
               Cow position:chr19:28450627-28450816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:151
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-188
               
               
               Cow position:chr19:30937446-30937253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):32, 38

               
               
               Conread position:1-188
               
               
               Cow position:chr19:47557575-47557765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:149
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:1-190
               
               
               Cow position:chr19:8032969-8033160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:1-213
               
               
               Cow position:chr19:42694450-42694672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):35, 100

               
               
               Conread position:1-249
               
               
               Cow position:chr19:32450503-32450766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-257
               
               
               Cow position:chr19:7637782-7637511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-258
               
               
               Cow position:chr19:14592512-14592766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:194
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):119, 52

               
               
               Conread position:1-258
               
               
               Cow position:chr19:35142885-35142614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:207
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):123, 35

               
               
               Conread position:1-259
               
               
               Cow position:chr19:6531380-6531656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):123, 52

               
               
               Conread position:1-259
               
               
               Cow position:chr19:40439359-40439635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-261
               
               
               Cow position:chr19:5434610-5434339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):188, 119

               
               
               Conread position:1-262
               
               
               Cow position:chr19:36221378-36221652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 42

               
               
               Conread position:1-262
               
               
               Cow position:chr19:44215861-44215585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-262
               
               
               Cow position:chr19:48698055-48698327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):34, 27

               
               
               Conread position:1-263
               
               
               Cow position:chr19:20433472-20433194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:205
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-263
               
               
               Cow position:chr19:39181764-39181492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):123, 69

               
               
               Conread position:1-263
               
               
               Cow position:chr19:42304850-42304572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr19:7716-7996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):22, 118

               
               
               Conread position:1-264
               
               
               Cow position:chr19:742734-742459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr19:5733262-5733532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:199
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr19:7491851-7492129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):123, 169

               
               
               Conread position:1-264
               
               
               Cow position:chr19:18016454-18016168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:217
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):103, 170

               
               
               Conread position:1-264
               
               
               Cow position:chr19:34282774-34283044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 108

               
               
               Conread position:1-265
               
               
               Cow position:chr19:1581134-1580861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr19:14473341-14473059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):67, 14

               
               
               Conread position:1-265
               
               
               Cow position:chr19:19500921-19500642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1-265
               
               
               Cow position:chr19:27612741-27612468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:201
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr19:29416308-29416584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):113, 153

               
               
               Conread position:1-265
               
               
               Cow position:chr19:30540622-30540342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr19:32457081-32457361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):123, 255

               
               
               Conread position:1-265
               
               
               Cow position:chr19:38392238-38392516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr19:44488805-44489089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-267
               
               
               Cow position:chr19:255354-255070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-267
               
               
               Cow position:chr19:42725801-42726075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):187, 57

               
               
               Conread position:1-268
               
               
               Cow position:chr19:130094-129810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr19:164378-164096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr19:208266-208550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):33, 157

               
               
               Conread position:1-268
               
               
               Cow position:chr19:434433-434153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):126, 78

               
               
               Conread position:1-268
               
               
               Cow position:chr19:729238-729521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):113, 174

               
               
               Conread position:1-268
               
               
               Cow position:chr19:777287-777570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr19:889029-888747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):113, 176

               
               
               Conread position:1-268
               
               
               Cow position:chr19:930590-930872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr19:1169151-1168871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr19:1901565-1901279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:210
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr19:2249713-2249430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr19:3246595-3246312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):124, 49

               
               
               Conread position:1-268
               
               
               Cow position:chr19:3472949-3473232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr19:4389552-4389834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):123, 52

               
               
               Conread position:1-268
               
               
               Cow position:chr19:4460972-4460691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):123, 17

               
               
               Conread position:1-268
               
               
               Cow position:chr19:5043928-5043650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):187, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr19:8206248-8205965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):129, 64

               
               
               Conread position:1-268
               
               
               Cow position:chr19:8567131-8567414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr19:12209160-12208867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):75, 113

               
               
               Conread position:1-268
               
               
               Cow position:chr19:13755321-13755613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):75, 42

               
               
               Conread position:1-268
               
               
               Cow position:chr19:14572805-14573092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr19:15071055-15071341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr19:15766543-15766826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr19:18786888-18786603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):39, 242

               
               
               Conread position:1-268
               
               
               Cow position:chr19:19500113-19499830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr19:19805085-19804810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):188, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr19:21336796-21336531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr19:23463178-23462898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):123, 89

               
               
               Conread position:1-268
               
               
               Cow position:chr19:23488527-23488808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):129, 104

               
               
               Conread position:1-268
               
               
               Cow position:chr19:24669911-24669646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):158, 97

               
               
               Conread position:1-268
               
               
               Cow position:chr19:24734908-24735191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr19:26518565-26518282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr19:30237475-30237757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr19:31783710-31783984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):123, 44

               
               
               Conread position:1-268
               
               
               Cow position:chr19:34655135-34654853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr19:34905554-34905273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr19:36104344-36104076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):123, 64

               
               
               Conread position:1-268
               
               
               Cow position:chr19:36352039-36352323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr19:37110514-37110239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr19:37332964-37333249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):102, 247

               
               
               Conread position:1-268
               
               
               Cow position:chr19:39245358-39245622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):67, 18

               
               
               Conread position:1-268
               
               
               Cow position:chr19:39395485-39395767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-268
               
               
               Cow position:chr19:39662104-39661822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):94, 15

               
               
               Conread position:1-268
               
               
               Cow position:chr19:40790587-40790310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):123, 66

               
               
               Conread position:1-268
               
               
               Cow position:chr19:40848719-40848436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):88, 123

               
               
               Conread position:1-268
               
               
               Cow position:chr19:42609151-42609435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr19:46918272-46918563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr19:48478399-48478687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):122, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr19:52147669-52147388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr19:55163886-55163603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr19:12697766-12698049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr19:14180230-14179949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:207
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-269
               
               
               Cow position:chr19:15068549-15068270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):83, 107

               
               
               Conread position:1-269
               
               
               Cow position:chr19:34911093-34911377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):39, 73

               
               
               Conread position:1-269
               
               
               Cow position:chr19:48408959-48409239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):43, 27

               
               
               Conread position:1-269
               
               
               Cow position:chr19:50833136-50832851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):100, 177

               
               
               Conread position:1-270
               
               
               Cow position:chr19:4447983-4448260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 35

               
               
               Conread position:1-282
               
               
               Cow position:chr19:37844007-37843723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):125, 16

               
               
               Conread position:1-284
               
               
               Cow position:chr19:35288301-35287997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):125, 108

               
               
               Conread position:1-284
               
               
               Cow position:chr19:39750920-39751222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):189, 21

               
               
               Conread position:1-284
               
               
               Cow position:chr19:43178822-43178536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):123, 23

               
               
               Conread position:1-287
               
               
               Cow position:chr19:14103875-14104171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):142, 85

               
               
               Conread position:1-287
               
               
               Cow position:chr19:37562565-37562275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:209
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-295
               
               
               Cow position:chr19:25085965-25086274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-298
               
               
               Cow position:chr19:7472821-7473132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 27

               
               
               Conread position:1-301
               
               
               Cow position:chr19:33586096-33585801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:212
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:1-303
               
               
               Cow position:chr19:38545136-38545460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):126, 283

               
               
               Conread position:2-169
               
               
               Cow position:chr19:55389507-55389341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):120, 64

               
               
               Conread position:2-184
               
               
               Cow position:chr19:19963473-19963657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-261
               
               
               Cow position:chr19:13267739-13267471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):101, 13

               
               
               Conread position:2-268
               
               
               Cow position:chr19:4895984-4895702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-268
               
               
               Cow position:chr19:54006355-54006638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):91, 106

               
               
               Conread position:2-269
               
               
               Cow position:chr19:39339096-39338815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):122, 68

               
               
               Conread position:2-291
               
               
               Cow position:chr19:48534489-48534798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):75, 108

               
               
               Conread position:2-293
               
               
               Cow position:chr19:11616401-11616089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):11, 32

               
               
               Conread position:3-258
               
               
               Cow position:chr19:25289131-25288862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):121, 86

               
               
               Conread position:3-260
               
               
               Cow position:chr19:25041884-25041614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):167, 104

               
               
               Conread position:3-268
               
               
               Cow position:chr19:13635480-13635761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):117, 104

               
               
               Conread position:3-283
               
               
               Cow position:chr19:23045223-23045520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):120, 104

               
               
               Conread position:4-141
               
               
               Cow position:chr19:19714787-19714927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:4-153
               
               
               Cow position:chr19:4778046-4778197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):119, 34

               
               
               Conread position:4-265
               
               
               Cow position:chr19:36125042-36125307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):186, 17

               
               
               Conread position:4-268
               
               
               Cow position:chr19:12652649-12652929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):120, 110

               
               
               Conread position:5-268
               
               
               Cow position:chr19:42062556-42062277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):119, 102

               
               
               Conread position:6-268
               
               
               Cow position:chr19:32164763-32164489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:203
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):182, 101

               
               
               Conread position:6-270
               
               
               Cow position:chr19:33932700-33932419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):79, 102

               
               
               Conread position:7-265
               
               
               Cow position:chr19:28370283-28370554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):26, 32

               
               
               Conread position:7-268
               
               
               Cow position:chr19:1582442-1582165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:10-188
               
               
               Cow position:chr19:39665146-39664969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):114, 13

               
               
               Conread position:11-265
               
               
               Cow position:chr19:55246896-55247162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:205
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):119, 96

               
               
               Conread position:12-268
               
               
               Cow position:chr19:4446166-4445898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:202
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):112, 29

               
               
               Conread position:12-269
               
               
               Cow position:chr19:51393187-51393461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):38, 96

               
               
               Conread position:14-258
               
               
               Cow position:chr19:43431865-43431606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):87, 17

               
               
               Conread position:15-268
               
               
               Cow position:chr19:7542878-7543144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:204
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):109, 28

               
               
               Conread position:15-268
               
               
               Cow position:chr19:10786896-10786637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):109, 69

               
               
               Conread position:16-188
               
               
               Cow position:chr19:28611140-28611314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):108, 60

               
               
               Conread position:16-188
               
               
               Cow position:chr19:33884735-33884560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:17-262
               
               
               Cow position:chr19:36189670-36189930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):19, 11

               
               
               Conread position:17-265
               
               
               Cow position:chr19:9093562-9093292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):16, 22

               
               
               Conread position:18-268
               
               
               Cow position:chr19:20661959-20661695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):77, 24

               
               
               Conread position:18-268
               
               
               Cow position:chr19:33286702-33286972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):45, 97

               
               
               Conread position:19-268
               
               
               Cow position:chr19:25168831-25168569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):105, 57

               
               
               Conread position:20-186
               
               
               Cow position:chr19:13128847-13129012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:21-263
               
               
               Cow position:chr19:20671446-20671184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):11, 87

               
               
               Conread position:22-264
               
               
               Cow position:chr19:2138633-2138387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):102, 85

               
               
               Conread position:22-269
               
               
               Cow position:chr19:24956964-24956707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):100, 11

               
               
               Conread position:24-262
               
               
               Cow position:chr19:17319640-17319894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):100, 37

               
               
               Conread position:24-292
               
               
               Cow position:chr19:11424828-11424547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):100, 83

               
               
               Conread position:28-186
               
               
               Cow position:chr19:36059377-36059537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):96, 79

               
               
               Conread position:28-262
               
               
               Cow position:chr19:33747319-33747569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):101, 79

               
               
               Conread position:28-268
               
               
               Cow position:chr19:34287278-34287535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):96, 27

               
               
               Conread position:28-292
               
               
               Cow position:chr19:51645071-51644786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):96, 10

               
               
               Conread position:29-256
               
               
               Cow position:chr19:52667604-52667835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):159, 78

               
               
               Conread position:29-265
               
               
               Cow position:chr19:36721802-36722054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:30-284
               
               
               Cow position:chr19:55783423-55783692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):93, 77

               
               
               Conread position:35-256
               
               
               Cow position:chr19:52214561-52214803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):21, 73

               
               
               Conread position:35-265
               
               
               Cow position:chr19:10212855-10213101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):89, 72

               
               
               Conread position:35-268
               
               
               Cow position:chr19:39056720-39056967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):89, 30

               
               
               Conread position:35-268
               
               
               Cow position:chr19:39649809-39649562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):46, 41

               
               
               Conread position:37-268
               
               
               Cow position:chr19:34956221-34955975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):86, 70

               
               
               Conread position:39-268
               
               
               Cow position:chr19:41139928-41139682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):85, 68

               
               
               Conread position:40-188
               
               
               Cow position:chr19:33822859-33823009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):85, 67

               
               
               Conread position:40-265
               
               
               Cow position:chr19:36844702-36844945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:41-281
               
               
               Cow position:chr19:10948135-10947880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):83, 66

               
               
               Conread position:43-268
               
               
               Cow position:chr19:730250-730008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:43-268
               
               
               Cow position:chr19:3249561-3249319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):81, 64

               
               
               Conread position:48-268
               
               
               Cow position:chr19:39610234-39610000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):76, 59

               
               
               Conread position:53-265
               
               
               Cow position:chr19:35782629-35782397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:54-268
               
               
               Cow position:chr19:34620527-34620312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):70, 44

               
               
               Conread position:55-268
               
               
               Cow position:chr19:21092289-21092502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):70, 52

               
               
               Conread position:57-268
               
               
               Cow position:chr19:27087298-27087527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):11, 53

               
               
               Conread position:59-269
               
               
               Cow position:chr19:14624084-14623858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):65, 48

               
               
               Conread position:59-289
               
               
               Cow position:chr19:9582803-9583047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):25, 17

               
               
               Conread position:67-269
               
               
               Cow position:chr19:42417372-42417590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):57, 40

               
               
               Conread position:68-268
               
               
               Cow position:chr19:54984582-54984793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):57, 39

               
               
               Conread position:91-265
               
               
               Cow position:chr19:2735518-2735327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):32, 18

               
               
               Conread position:102-270
               
               
               Cow position:chr19:38638489-38638301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:1-122
               
               
               Cow position:chr2:38206588-38206471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):16, 67

               
               
               Conread position:1-182
               
               
               Cow position:chr2:44006489-44006672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):122, 41

               
               
               Conread position:1-184
               
               
               Cow position:chr2:7466635-7466824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:1-184
               
               
               Cow position:chr2:7534345-7534160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-184
               
               
               Cow position:chr2:72527413-72527591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):123, 71

               
               
               Conread position:1-185
               
               
               Cow position:chr2:6739093-6738913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:1-185
               
               
               Cow position:chr2:41526363-41526177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:151
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-185
               
               
               Cow position:chr2:68488552-68488368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):122, 98

               
               
               Conread position:1-186
               
               
               Cow position:chr2:4017404-4017217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):123, 35

               
               
               Conread position:1-186
               
               
               Cow position:chr2:21170528-21170708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):41, 57

               
               
               Conread position:1-188
               
               
               Cow position:chr2:6950685-6950873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):121, 95

               
               
               Conread position:1-188
               
               
               Cow position:chr2:8575647-8575454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):104, 150

               
               
               Conread position:1-188
               
               
               Cow position:chr2:20979802-20979991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-188
               
               
               Cow position:chr2:28319902-28319724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):122, 32

               
               
               Conread position:1-188
               
               
               Cow position:chr2:46226526-46226715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-188
               
               
               Cow position:chr2:46450227-46450419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-189
               
               
               Cow position:chr2:12286409-12286598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):123, 60

               
               
               Conread position:1-189
               
               
               Cow position:chr2:13066793-13066603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-189
               
               
               Cow position:chr2:61052335-61052525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:1-190
               
               
               Cow position:chr2:78356725-78356914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-206
               
               
               Cow position:chr2:75842424-75842211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):123, 65

               
               
               Conread position:1-211
               
               
               Cow position:chr2:62684326-62684536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):122, 69

               
               
               Conread position:1-236
               
               
               Cow position:chr2:10183022-10182772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):123, 26

               
               
               Conread position:1-248
               
               
               Cow position:chr2:14218216-14218478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-248
               
               
               Cow position:chr2:70023645-70023907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):122, 27

               
               
               Conread position:1-255
               
               
               Cow position:chr2:56059066-56059336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):106, 174

               
               
               Conread position:1-256
               
               
               Cow position:chr2:1754239-1754502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):113, 7

               
               
               Conread position:1-256
               
               
               Cow position:chr2:56054956-56055226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-257
               
               
               Cow position:chr2:19288112-19287839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:205
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):65, 107

               
               
               Conread position:1-258
               
               
               Cow position:chr2:778239-777968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):121, 27

               
               
               Conread position:1-258
               
               
               Cow position:chr2:11616500-11616776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):121, 107

               
               
               Conread position:1-258
               
               
               Cow position:chr2:28654294-28654022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):123, 6

               
               
               Conread position:1-258
               
               
               Cow position:chr2:29802684-29802407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:207
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-258
               
               
               Cow position:chr2:36008125-36007849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):35, 13

               
               
               Conread position:1-258
               
               
               Cow position:chr2:58537517-58537255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):122, 75

               
               
               Conread position:1-258
               
               
               Cow position:chr2:78906393-78906658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):189, 40

               
               
               Conread position:1-259
               
               
               Cow position:chr2:58024767-58025037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):110, 26

               
               
               Conread position:1-260
               
               
               Cow position:chr2:10468840-10469115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-260
               
               
               Cow position:chr2:16387161-16387424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):123, 109

               
               
               Conread position:1-260
               
               
               Cow position:chr2:30140828-30141105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-260
               
               
               Cow position:chr2:49449435-49449163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-260
               
               
               Cow position:chr2:82267872-82267603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):189, 22

               
               
               Conread position:1-261
               
               
               Cow position:chr2:6539789-6539510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):92, 44

               
               
               Conread position:1-261
               
               
               Cow position:chr2:55480798-55480534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-261
               
               
               Cow position:chr2:81396997-81397279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-262
               
               
               Cow position:chr2:34705321-34705044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-263
               
               
               Cow position:chr2:1961932-1962210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-263
               
               
               Cow position:chr2:14806885-14806605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-263
               
               
               Cow position:chr2:20946801-20947077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:1-263
               
               
               Cow position:chr2:31501645-31501922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:207
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):126, 106

               
               
               Conread position:1-263
               
               
               Cow position:chr2:33080565-33080292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-263
               
               
               Cow position:chr2:68191155-68190889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:205
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:1-264
               
               
               Cow position:chr2:549864-549589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):120, 105

               
               
               Conread position:1-264
               
               
               Cow position:chr2:618719-618994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):123, 22

               
               
               Conread position:1-264
               
               
               Cow position:chr2:8121906-8122185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr2:18049872-18049603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):187, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr2:21042310-21042585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):119, 32

               
               
               Conread position:1-264
               
               
               Cow position:chr2:31506403-31506128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr2:45543144-45542864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):40, 109

               
               
               Conread position:1-264
               
               
               Cow position:chr2:47362047-47361790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):124, 29

               
               
               Conread position:1-264
               
               
               Cow position:chr2:51406129-51406408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:205
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr2:76314394-76314125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 48

               
               
               Conread position:1-265
               
               
               Cow position:chr2:982228-982508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr2:1421837-1422111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:203
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):79, 107

               
               
               Conread position:1-265
               
               
               Cow position:chr2:4237333-4237053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr2:6911454-6911721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):79, 73

               
               
               Conread position:1-265
               
               
               Cow position:chr2:9357999-9357712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):122, 253

               
               
               Conread position:1-265
               
               
               Cow position:chr2:10608581-10608302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr2:11152776-11152496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:212
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr2:12736625-12736345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):114, 29

               
               
               Conread position:1-265
               
               
               Cow position:chr2:16331403-16331682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):123, 109

               
               
               Conread position:1-265
               
               
               Cow position:chr2:16717694-16717414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr2:28611642-28611359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):38, 26

               
               
               Conread position:1-265
               
               
               Cow position:chr2:28637819-28637551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):187, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr2:32659645-32659927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:211
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr2:33752945-33753225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr2:34642878-34643158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:210
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr2:36056345-36056066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):123, 83

               
               
               Conread position:1-265
               
               
               Cow position:chr2:37742754-37743035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:208
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):82, 75

               
               
               Conread position:1-265
               
               
               Cow position:chr2:41915973-41915694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr2:43596721-43596439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):59, 110

               
               
               Conread position:1-265
               
               
               Cow position:chr2:44222080-44222350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):123, 109

               
               
               Conread position:1-265
               
               
               Cow position:chr2:47783825-47784105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:211
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):32, 38

               
               
               Conread position:1-265
               
               
               Cow position:chr2:54811028-54811305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):190, 92

               
               
               Conread position:1-265
               
               
               Cow position:chr2:61974234-61974509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr2:63752263-63752543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):40, 32

               
               
               Conread position:1-265
               
               
               Cow position:chr2:67187638-67187358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr2:69223780-69223498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:209
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr2:72930877-72930617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):123, 54

               
               
               Conread position:1-265
               
               
               Cow position:chr2:76984703-76984425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):32, 135

               
               
               Conread position:1-265
               
               
               Cow position:chr2:77157902-77157623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-266
               
               
               Cow position:chr2:54788919-54789201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):128, 106

               
               
               Conread position:1-267
               
               
               Cow position:chr2:2672976-2673258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-267
               
               
               Cow position:chr2:52485530-52485255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):123, 32

               
               
               Conread position:1-268
               
               
               Cow position:chr2:356108-355822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr2:362317-362034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:212
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):123, 175

               
               
               Conread position:1-268
               
               
               Cow position:chr2:894253-893970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:1186641-1186359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):123, 73

               
               
               Conread position:1-268
               
               
               Cow position:chr2:1199634-1199353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):123, 84

               
               
               Conread position:1-268
               
               
               Cow position:chr2:2100127-2099844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:2603877-2604156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):69, 48

               
               
               Conread position:1-268
               
               
               Cow position:chr2:3079214-3078931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:3669272-3669555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:4394447-4394165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:4833104-4832822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:1-268
               
               
               Cow position:chr2:4916842-4916559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:5914255-5914538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-268
               
               
               Cow position:chr2:6978351-6978068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:7432864-7433147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:9370346-9370062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):107, 49

               
               
               Conread position:1-268
               
               
               Cow position:chr2:9591392-9591673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):124, 105

               
               
               Conread position:1-268
               
               
               Cow position:chr2:9956015-9955734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):123, 18

               
               
               Conread position:1-268
               
               
               Cow position:chr2:10262195-10261912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:208
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr2:11726588-11726871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:12221084-12220801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):133, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:12596153-12596436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):92, 174

               
               
               Conread position:1-268
               
               
               Cow position:chr2:12694457-12694173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr2:14955354-14955626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):123, 67

               
               
               Conread position:1-268
               
               
               Cow position:chr2:15061587-15061301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:210
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):106, 5

               
               
               Conread position:1-268
               
               
               Cow position:chr2:15963333-15963044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr2:16308835-16309119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:16496909-16496623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr2:16514239-16514523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):108, 46

               
               
               Conread position:1-268
               
               
               Cow position:chr2:16752685-16752405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:18520607-18520332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:19294099-19294367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-268
               
               
               Cow position:chr2:21169554-21169833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):123, 9

               
               
               Conread position:1-268
               
               
               Cow position:chr2:21661932-21662215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:21981542-21981259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:22345233-22345512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:25025431-25025713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr2:25742057-25741776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):74, 79

               
               
               Conread position:1-268
               
               
               Cow position:chr2:25885336-25885053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):92, 122

               
               
               Conread position:1-268
               
               
               Cow position:chr2:27179584-27179867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:28646412-28646130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):110, 174

               
               
               Conread position:1-268
               
               
               Cow position:chr2:29380447-29380164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:30959346-30959628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):75, 17

               
               
               Conread position:1-268
               
               
               Cow position:chr2:31499445-31499735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:31857535-31857248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:32113522-32113238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:32286395-32286114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):123, 32

               
               
               Conread position:1-268
               
               
               Cow position:chr2:32357424-32357707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:32499428-32499140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:34467440-34467156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:34572018-34571734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):92, 149

               
               
               Conread position:1-268
               
               
               Cow position:chr2:34592091-34591804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):119, 97

               
               
               Conread position:1-268
               
               
               Cow position:chr2:36073504-36073221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:36104696-36104990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):34, 81

               
               
               Conread position:1-268
               
               
               Cow position:chr2:36136477-36136742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):123, 44

               
               
               Conread position:1-268
               
               
               Cow position:chr2:36983867-36984149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr2:38335590-38335874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):67, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr2:38650465-38650748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:39119845-39120128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):128, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:39280649-39280926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:39662155-39662432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):123, 18

               
               
               Conread position:1-268
               
               
               Cow position:chr2:39677287-39677570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):82, 75

               
               
               Conread position:1-268
               
               
               Cow position:chr2:39912981-39913270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr2:39936356-39936639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:40248468-40248185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:40729703-40729986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:42363340-42363057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:43473638-43473924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:43625078-43624793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):53, 100

               
               
               Conread position:1-268
               
               
               Cow position:chr2:43826194-43826477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:43978448-43978167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):122, 42

               
               
               Conread position:1-268
               
               
               Cow position:chr2:44094579-44094859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:44476274-44475991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:44931803-44931527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr2:45051237-45050954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:45353930-45353647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:45562906-45563188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 22

               
               
               Conread position:1-268
               
               
               Cow position:chr2:46182320-46182036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr2:46252883-46252601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 77

               
               
               Conread position:1-268
               
               
               Cow position:chr2:48850027-48849744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:49630538-49630821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:50080779-50081061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:50327944-50328226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:1-268
               
               
               Cow position:chr2:50812820-50813098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):123, 50

               
               
               Conread position:1-268
               
               
               Cow position:chr2:51161789-51162072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:52128122-52127860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):122, 90

               
               
               Conread position:1-268
               
               
               Cow position:chr2:52159458-52159193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:200
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:52806662-52806954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):75, 119

               
               
               Conread position:1-268
               
               
               Cow position:chr2:53002999-53002716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:53182502-53182219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):120, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:53203910-53203637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):119, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:53557378-53557661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:53574583-53574842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:204
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):123, 56

               
               
               Conread position:1-268
               
               
               Cow position:chr2:54740690-54740973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:56306620-56306340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):106, 26

               
               
               Conread position:1-268
               
               
               Cow position:chr2:56365731-56365449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:57557479-57557197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:57938610-57938893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:60051254-60050971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:62999556-62999273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:63706935-63706650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):41, 108

               
               
               Conread position:1-268
               
               
               Cow position:chr2:65306099-65306382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:66218090-66217806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr2:67724666-67724391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):118, 51

               
               
               Conread position:1-268
               
               
               Cow position:chr2:70524971-70525252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:70638606-70638887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):119, 267

               
               
               Conread position:1-268
               
               
               Cow position:chr2:70944857-70945132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):35, 108

               
               
               Conread position:1-268
               
               
               Cow position:chr2:72535496-72535769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:73095555-73095272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):35, 108

               
               
               Conread position:1-268
               
               
               Cow position:chr2:74237450-74237173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):123, 52

               
               
               Conread position:1-268
               
               
               Cow position:chr2:75364693-75364410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:78363028-78363311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):129, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr2:78765933-78766216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:80288539-80288255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):13, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr2:81260121-81260404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:83887136-83887419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr2:84964530-84964247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr2:279039-278756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):123, 35

               
               
               Conread position:1-269
               
               
               Cow position:chr2:2065854-2065572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):131, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr2:5998364-5998648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):128, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr2:13579695-13579978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 109

               
               
               Conread position:1-269
               
               
               Cow position:chr2:14883725-14884018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:1-269
               
               
               Cow position:chr2:17940830-17940551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):35, 29

               
               
               Conread position:1-269
               
               
               Cow position:chr2:23492989-23493269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr2:24875988-24875704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr2:33263159-33262881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):60, 35

               
               
               Conread position:1-269
               
               
               Cow position:chr2:34617418-34617695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:1-269
               
               
               Cow position:chr2:41954209-41954493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr2:42361440-42361724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):123, 278

               
               
               Conread position:1-269
               
               
               Cow position:chr2:50431239-50430955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):129, 107

               
               
               Conread position:1-269
               
               
               Cow position:chr2:50979957-50979668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr2:76123149-76122863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 107

               
               
               Conread position:1-270
               
               
               Cow position:chr2:10691975-10691696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):129, 42

               
               
               Conread position:1-270
               
               
               Cow position:chr2:30751623-30751908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):82, 75

               
               
               Conread position:1-270
               
               
               Cow position:chr2:31125235-31125520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):122, 95

               
               
               Conread position:1-270
               
               
               Cow position:chr2:40727819-40728103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:213
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:1-270
               
               
               Cow position:chr2:55632228-55632511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-270
               
               
               Cow position:chr2:62239037-62239330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:1-270
               
               
               Cow position:chr2:77281389-77281677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):122, 27

               
               
               Conread position:1-273
               
               
               Cow position:chr2:51824389-51824678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:216
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):50, 108

               
               
               Conread position:1-274
               
               
               Cow position:chr2:44483183-44482906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:211
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-278
               
               
               Cow position:chr2:9688110-9687819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-279
               
               
               Cow position:chr2:41451679-41451974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:218
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-282
               
               
               Cow position:chr2:24270673-24270973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 279

               
               
               Conread position:1-284
               
               
               Cow position:chr2:12185488-12185776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 66

               
               
               Conread position:1-284
               
               
               Cow position:chr2:17808450-17808750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):82, 75

               
               
               Conread position:1-284
               
               
               Cow position:chr2:31119468-31119768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-284
               
               
               Cow position:chr2:53659068-53658768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):92, 298

               
               
               Conread position:1-284
               
               
               Cow position:chr2:59953401-59953103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:220
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):126, 107

               
               
               Conread position:1-284
               
               
               Cow position:chr2:85739581-85739880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-284
               
               
               Cow position:chr2:86532725-86533024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:1-291
               
               
               Cow position:chr2:66480886-66480589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):119, 106

               
               
               Conread position:1-292
               
               
               Cow position:chr2:85496896-85496592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):122, 44

               
               
               Conread position:1-293
               
               
               Cow position:chr2:74238721-74238427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:1-294
               
               
               Cow position:chr2:1849472-1849780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-294
               
               
               Cow position:chr2:60937439-60937750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):32, 87

               
               
               Conread position:1-297
               
               
               Cow position:chr2:47008897-47008602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):123, 32

               
               
               Conread position:1-298
               
               
               Cow position:chr2:13603569-13603885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):123, 14

               
               
               Conread position:1-300
               
               
               Cow position:chr2:10566092-10566411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):117, 35

               
               
               Conread position:1-301
               
               
               Cow position:chr2:32409050-32408747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-301
               
               
               Cow position:chr2:41157387-41157697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):123, 26

               
               
               Conread position:1-303
               
               
               Cow position:chr2:11899604-11899921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 40

               
               
               Conread position:1-303
               
               
               Cow position:chr2:16071968-16071661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):34, 14

               
               
               Conread position:1-303
               
               
               Cow position:chr2:30816363-30816679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 95

               
               
               Conread position:1-303
               
               
               Cow position:chr2:48360942-48361256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 106

               
               
               Conread position:1-306
               
               
               Cow position:chr2:14349220-14349542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:240
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-306
               
               
               Cow position:chr2:42938940-42938616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):114, 123

               
               
               Conread position:2-184
               
               
               Cow position:chr2:33555136-33554964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:2-188
               
               
               Cow position:chr2:29907928-29907740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-211
               
               
               Cow position:chr2:45917552-45917334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-258
               
               
               Cow position:chr2:12803198-12802926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:2-262
               
               
               Cow position:chr2:10744019-10743746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):102, 118

               
               
               Conread position:2-264
               
               
               Cow position:chr2:80839955-80839681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):105, 116

               
               
               Conread position:2-265
               
               
               Cow position:chr2:36397382-36397661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-268
               
               
               Cow position:chr2:44189621-44189906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):106, 177

               
               
               Conread position:2-268
               
               
               Cow position:chr2:80892855-80892575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):125, 255

               
               
               Conread position:2-284
               
               
               Cow position:chr2:31672732-31673028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):32, 13

               
               
               Conread position:3-258
               
               
               Cow position:chr2:16018833-16018555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):121, 25

               
               
               Conread position:3-258
               
               
               Cow position:chr2:71437925-71437657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-263
               
               
               Cow position:chr2:59397600-59397330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):121, 25

               
               
               Conread position:3-265
               
               
               Cow position:chr2:15216042-15216320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:211
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):81, 33

               
               
               Conread position:3-268
               
               
               Cow position:chr2:5459489-5459215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-268
               
               
               Cow position:chr2:20521883-20521607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-269
               
               
               Cow position:chr2:42667490-42667208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:3-269
               
               
               Cow position:chr2:47137820-47138102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):121, 105

               
               
               Conread position:3-297
               
               
               Cow position:chr2:70933737-70933424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):124, 105

               
               
               Conread position:3-305
               
               
               Cow position:chr2:39583841-39584170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):39, 12

               
               
               Conread position:4-188
               
               
               Cow position:chr2:50631970-50632154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):119, 74

               
               
               Conread position:4-269
               
               
               Cow position:chr2:43210348-43210629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):120, 103

               
               
               Conread position:4-272
               
               
               Cow position:chr2:64830133-64830417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):78, 72

               
               
               Conread position:4-290
               
               
               Cow position:chr2:28681459-28681152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):116, 103

               
               
               Conread position:5-268
               
               
               Cow position:chr2:12950699-12950433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):186, 23

               
               
               Conread position:6-262
               
               
               Cow position:chr2:84996773-84997044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:202
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):118, 101

               
               
               Conread position:7-258
               
               
               Cow position:chr2:47454175-47453908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):29, 43

               
               
               Conread position:7-265
               
               
               Cow position:chr2:65604470-65604196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:206
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):117, 100

               
               
               Conread position:7-268
               
               
               Cow position:chr2:14825742-14826018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):28, 72

               
               
               Conread position:7-268
               
               
               Cow position:chr2:41009213-41008943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):183, 100

               
               
               Conread position:7-268
               
               
               Cow position:chr2:78749994-78750271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:207
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):117, 100

               
               
               Conread position:7-274
               
               
               Cow position:chr2:3629087-3628797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):105, 21

               
               
               Conread position:7-282
               
               
               Cow position:chr2:12331152-12331442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):117, 157

               
               
               Conread position:8-264
               
               
               Cow position:chr2:5297194-5297469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):105, 99

               
               
               Conread position:9-268
               
               
               Cow position:chr2:21644993-21644719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:208
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):115, 99

               
               
               Conread position:10-264
               
               
               Cow position:chr2:39386414-39386146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):113, 39

               
               
               Conread position:10-268
               
               
               Cow position:chr2:12371028-12371302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):114, 97

               
               
               Conread position:11-251
               
               
               Cow position:chr2:71164256-71164005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):175, 245

               
               
               Conread position:11-269
               
               
               Cow position:chr2:33390606-33390871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):156, 96

               
               
               Conread position:12-301
               
               
               Cow position:chr2:18620823-18621130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):112, 95

               
               
               Conread position:12-304
               
               
               Cow position:chr2:58321328-58321015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):108, 6

               
               
               Conread position:14-302
               
               
               Cow position:chr2:31540910-31541219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):77, 276

               
               
               Conread position:15-262
               
               
               Cow position:chr2:72184150-72183891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):109, 92

               
               
               Conread position:15-302
               
               
               Cow position:chr2:23639917-23640221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):89, 23

               
               
               Conread position:15-306
               
               
               Cow position:chr2:26102211-26102527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):18, 25

               
               
               Conread position:16-255
               
               
               Cow position:chr2:39815812-39815559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):108, 91

               
               
               Conread position:16-268
               
               
               Cow position:chr2:5606620-5606888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):108, 91

               
               
               Conread position:16-268
               
               
               Cow position:chr2:45517867-45518134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):107, 12

               
               
               Conread position:16-268
               
               
               Cow position:chr2:81931995-81931727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):107, 91

               
               
               Conread position:16-270
               
               
               Cow position:chr2:62564226-62563950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):108, 92

               
               
               Conread position:16-300
               
               
               Cow position:chr2:23129454-23129162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):105, 84

               
               
               Conread position:18-186
               
               
               Cow position:chr2:62772770-62772602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):106, 12

               
               
               Conread position:18-268
               
               
               Cow position:chr2:46311921-46312185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):106, 89

               
               
               Conread position:18-269
               
               
               Cow position:chr2:27613544-27613291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):106, 89

               
               
               Conread position:18-295
               
               
               Cow position:chr2:56737894-56737598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:219
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):91, 273

               
               
               Conread position:19-268
               
               
               Cow position:chr2:78518726-78518991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:20-268
               
               
               Cow position:chr2:45913163-45912904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):104, 13

               
               
               Conread position:21-262
               
               
               Cow position:chr2:15812155-15812412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):47, 81

               
               
               Conread position:21-268
               
               
               Cow position:chr2:43120574-43120834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):108, 17

               
               
               Conread position:21-269
               
               
               Cow position:chr2:39940967-39941224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):103, 86

               
               
               Conread position:23-189
               
               
               Cow position:chr2:19871933-19872101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):101, 84

               
               
               Conread position:23-284
               
               
               Cow position:chr2:45463098-45462820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):39, 50

               
               
               Conread position:24-265
               
               
               Cow position:chr2:82055662-82055402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):12, 87

               
               
               Conread position:25-268
               
               
               Cow position:chr2:31743087-31742828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):99, 82

               
               
               Conread position:26-268
               
               
               Cow position:chr2:1365416-1365160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):98, 15

               
               
               Conread position:26-268
               
               
               Cow position:chr2:44190957-44191218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):98, 12

               
               
               Conread position:27-268
               
               
               Cow position:chr2:28750449-28750703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):9, 89

               
               
               Conread position:27-269
               
               
               Cow position:chr2:82581452-82581196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):102, 9

               
               
               Conread position:28-265
               
               
               Cow position:chr2:16593806-16594060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:28-265
               
               
               Cow position:chr2:16632135-16632389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:28-268
               
               
               Cow position:chr2:24540071-24540326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):96, 25

               
               
               Conread position:28-268
               
               
               Cow position:chr2:39385379-39385129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):94, 80

               
               
               Conread position:28-268
               
               
               Cow position:chr2:55279098-55278859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):96, 22

               
               
               Conread position:29-258
               
               
               Cow position:chr2:42800530-42800774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):94, 215

               
               
               Conread position:29-265
               
               
               Cow position:chr2:56355369-56355118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):95, 78

               
               
               Conread position:30-244
               
               
               Cow position:chr2:13467186-13467415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):94, 42

               
               
               Conread position:30-258
               
               
               Cow position:chr2:58074849-58074625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):141, 68

               
               
               Conread position:30-268
               
               
               Cow position:chr2:61890038-61889794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):149, 9

               
               
               Conread position:32-305
               
               
               Cow position:chr2:39500461-39500750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):92, 76

               
               
               Conread position:33-186
               
               
               Cow position:chr2:47644552-47644702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):37, 82

               
               
               Conread position:35-270
               
               
               Cow position:chr2:42226785-42226535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):89, 72

               
               
               Conread position:35-270
               
               
               Cow position:chr2:60470669-60470918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):89, 18

               
               
               Conread position:37-269
               
               
               Cow position:chr2:46058845-46058597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):87, 70

               
               
               Conread position:38-270
               
               
               Cow position:chr2:27358533-27358778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):86, 69

               
               
               Conread position:41-188
               
               
               Cow position:chr2:35483738-35483886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):83, 66

               
               
               Conread position:41-263
               
               
               Cow position:chr2:63250899-63250661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):83, 66

               
               
               Conread position:41-268
               
               
               Cow position:chr2:15808498-15808741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):83, 66

               
               
               Conread position:41-268
               
               
               Cow position:chr2:34574731-34574973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):52, 14

               
               
               Conread position:41-269
               
               
               Cow position:chr2:34491684-34491915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:41-301
               
               
               Cow position:chr2:70656438-70656697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):83, 164

               
               
               Conread position:42-268
               
               
               Cow position:chr2:82527322-82527081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:43-260
               
               
               Cow position:chr2:36867276-36867036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):81, 56

               
               
               Conread position:43-268
               
               
               Cow position:chr2:64532839-64533076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):81, 67

               
               
               Conread position:45-254
               
               
               Cow position:chr2:67596503-67596279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):78, 62

               
               
               Conread position:45-268
               
               
               Cow position:chr2:67235650-67235890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:47-196
               
               
               Cow position:chr2:72543039-72543190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):76, 60

               
               
               Conread position:48-188
               
               
               Cow position:chr2:45479320-45479177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):65, 52

               
               
               Conread position:48-268
               
               
               Cow position:chr2:36423530-36423766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):76, 59

               
               
               Conread position:48-268
               
               
               Cow position:chr2:71800592-71800357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):32, 26

               
               
               Conread position:49-265
               
               
               Cow position:chr2:46995389-46995158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):68, 58

               
               
               Conread position:49-266
               
               
               Cow position:chr2:50606007-50606246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):75, 58

               
               
               Conread position:49-268
               
               
               Cow position:chr2:44170059-44170290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):74, 47

               
               
               Conread position:50-293
               
               
               Cow position:chr2:1202645-1202903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):74, 57

               
               
               Conread position:52-265
               
               
               Cow position:chr2:70776069-70775835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:52-269
               
               
               Cow position:chr2:52409771-52409537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):72, 55

               
               
               Conread position:53-189
               
               
               Cow position:chr2:56103171-56103036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):69, 54

               
               
               Conread position:54-268
               
               
               Cow position:chr2:43104864-43105094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):71, 53

               
               
               Conread position:55-268
               
               
               Cow position:chr2:6070580-6070351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):69, 52

               
               
               Conread position:55-268
               
               
               Cow position:chr2:46264896-46264667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):69, 52

               
               
               Conread position:61-268
               
               
               Cow position:chr2:29297041-29296820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):60, 203

               
               
               Conread position:67-261
               
               
               Cow position:chr2:86100398-86100603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):57, 31

               
               
               Conread position:67-268
               
               
               Cow position:chr2:35981172-35980956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):57, 40

               
               
               Conread position:71-268
               
               
               Cow position:chr2:58248335-58248131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):123, 36

               
               
               Conread position:80-265
               
               
               Cow position:chr2:37072339-37072543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):44, 28

               
               
               Conread position:80-265
               
               
               Cow position:chr2:55387080-55387280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):44, 27

               
               
               Conread position:88-268
               
               
               Cow position:chr2:5980852-5981049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:91-303
               
               
               Cow position:chr2:18614013-18613779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):33, 17

               
               
               Conread position:100-268
               
               
               Cow position:chr2:42383953-42384138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:110-269
               
               
               Cow position:chr2:29159190-29159364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:123-301
               
               
               Cow position:chr2:10320414-10320223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):75, 162

               
               
               Conread position:1-122
               
               
               Cow position:chr20:14585841-14585960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:1-141
               
               
               Cow position:chr20:2942088-2941946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):120, 75

               
               
               Conread position:1-186
               
               
               Cow position:chr20:9588084-9588270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-187
               
               
               Cow position:chr20:41976915-41977104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-188
               
               
               Cow position:chr20:4668436-4668625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:153
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):123, 35

               
               
               Conread position:1-188
               
               
               Cow position:chr20:13501418-13501608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):86, 116

               
               
               Conread position:1-188
               
               
               Cow position:chr20:15235336-15235525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):66, 35

               
               
               Conread position:1-188
               
               
               Cow position:chr20:22027522-22027711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-188
               
               
               Cow position:chr20:41474584-41474395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-189
               
               
               Cow position:chr20:7442660-7442470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-196
               
               
               Cow position:chr20:10199858-10200056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:156
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-196
               
               
               Cow position:chr20:23847471-23847279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):123, 83

               
               
               Conread position:1-211
               
               
               Cow position:chr20:23465920-23465711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):82, 27

               
               
               Conread position:1-247
               
               
               Cow position:chr20:30817029-30817291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):124, 106

               
               
               Conread position:1-255
               
               
               Cow position:chr20:9536633-9536900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):67, 90

               
               
               Conread position:1-256
               
               
               Cow position:chr20:26826128-26825858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):123, 35

               
               
               Conread position:1-257
               
               
               Cow position:chr20:20779046-20778778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-258
               
               
               Cow position:chr20:4756329-4756056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-258
               
               
               Cow position:chr20:12421144-12420872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-258
               
               
               Cow position:chr20:16941912-16941653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-260
               
               
               Cow position:chr20:19845495-19845770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:1-260
               
               
               Cow position:chr20:30689606-30689880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:205
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):110, 27

               
               
               Conread position:1-261
               
               
               Cow position:chr20:15117541-15117817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):123, 91

               
               
               Conread position:1-262
               
               
               Cow position:chr20:5104941-5104664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-263
               
               
               Cow position:chr20:1990240-1989968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):95, 107

               
               
               Conread position:1-263
               
               
               Cow position:chr20:7757133-7756856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):124, 105

               
               
               Conread position:1-263
               
               
               Cow position:chr20:35113026-35113302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):78, 46

               
               
               Conread position:1-264
               
               
               Cow position:chr20:20236299-20236564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):178, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr20:26052619-26052341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr20:398796-398520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr20:581429-581155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):50, 107

               
               
               Conread position:1-265
               
               
               Cow position:chr20:6239151-6238874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):129, 53

               
               
               Conread position:1-265
               
               
               Cow position:chr20:6258561-6258290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):123, 32

               
               
               Conread position:1-265
               
               
               Cow position:chr20:7994805-7994549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:199
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):123, 35

               
               
               Conread position:1-265
               
               
               Cow position:chr20:8482709-8482433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):123, 52

               
               
               Conread position:1-265
               
               
               Cow position:chr20:8577741-8578019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr20:12321127-12321406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):123, 5

               
               
               Conread position:1-265
               
               
               Cow position:chr20:12567593-12567315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):123, 90

               
               
               Conread position:1-265
               
               
               Cow position:chr20:14740595-14740324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):118, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr20:20202720-20202989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):123, 173

               
               
               Conread position:1-265
               
               
               Cow position:chr20:22209355-22209635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:1-265
               
               
               Cow position:chr20:25658295-25658016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-265
               
               
               Cow position:chr20:26679336-26679609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):188, 73

               
               
               Conread position:1-265
               
               
               Cow position:chr20:27877217-27877496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1-265
               
               
               Cow position:chr20:28443618-28443338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr20:29784208-29784488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr20:31261231-31261506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:205
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):19, 107

               
               
               Conread position:1-267
               
               
               Cow position:chr20:4788734-4788463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):121, 29

               
               
               Conread position:1-267
               
               
               Cow position:chr20:14719247-14718965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr20:754175-754458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr20:4945751-4945469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):123, 82

               
               
               Conread position:1-268
               
               
               Cow position:chr20:5958411-5958128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr20:6135257-6134988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr20:7710712-7710431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:213
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):120, 18

               
               
               Conread position:1-268
               
               
               Cow position:chr20:8112306-8112590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr20:8870590-8870308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):123, 78

               
               
               Conread position:1-268
               
               
               Cow position:chr20:9474119-9473838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 41

               
               
               Conread position:1-268
               
               
               Cow position:chr20:9509436-9509153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr20:10288417-10288701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr20:10538815-10539097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr20:11171383-11171665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr20:11453867-11453578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:217
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr20:11516308-11516031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):123, 14

               
               
               Conread position:1-268
               
               
               Cow position:chr20:11549858-11550142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr20:13619060-13618777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr20:13766616-13766899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr20:13877216-13876932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr20:14756577-14756291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:214
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr20:14836919-14837202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr20:15295751-15296038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):67, 76

               
               
               Conread position:1-268
               
               
               Cow position:chr20:15437459-15437741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):131, 35

               
               
               Conread position:1-268
               
               
               Cow position:chr20:17582303-17582583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):12, 16

               
               
               Conread position:1-268
               
               
               Cow position:chr20:17657499-17657225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr20:18091878-18091597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):123, 22

               
               
               Conread position:1-268
               
               
               Cow position:chr20:18162520-18162803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr20:18168874-18169157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr20:18223085-18222802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr20:19363868-19363586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):35, 22

               
               
               Conread position:1-268
               
               
               Cow position:chr20:19410870-19410589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr20:19441653-19441934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):129, 37

               
               
               Conread position:1-268
               
               
               Cow position:chr20:20353421-20353138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr20:20438300-20438018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-268
               
               
               Cow position:chr20:20731976-20732265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr20:23802884-23803167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr20:25844574-25844291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-268
               
               
               Cow position:chr20:28282812-28283094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):13, 54

               
               
               Conread position:1-268
               
               
               Cow position:chr20:28295051-28295313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):29, 108

               
               
               Conread position:1-268
               
               
               Cow position:chr20:29370685-29370402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr20:29602190-29601922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr20:30736909-30736622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):47, 110

               
               
               Conread position:1-268
               
               
               Cow position:chr20:31784579-31784296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr20:34458540-34458257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr20:34968734-34969017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr20:35169778-35170059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr20:37154232-37153950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):123, 44

               
               
               Conread position:1-268
               
               
               Cow position:chr20:38001212-38001495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):32, 38

               
               
               Conread position:1-268
               
               
               Cow position:chr20:38488487-38488771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):123, 175

               
               
               Conread position:1-268
               
               
               Cow position:chr20:39391408-39391125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr20:41688132-41688414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1-269
               
               
               Cow position:chr20:6501295-6501576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):115, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr20:7527871-7527582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):83, 77

               
               
               Conread position:1-269
               
               
               Cow position:chr20:10497707-10497423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr20:10919821-10919538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):110, 27

               
               
               Conread position:1-269
               
               
               Cow position:chr20:16407177-16407452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:202
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr20:18413359-18413634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):161, 99

               
               
               Conread position:1-269
               
               
               Cow position:chr20:20983522-20983802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):23, 107

               
               
               Conread position:1-269
               
               
               Cow position:chr20:24903122-24902839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):119, 148

               
               
               Conread position:1-269
               
               
               Cow position:chr20:26078908-26078636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 107

               
               
               Conread position:1-269
               
               
               Cow position:chr20:27339568-27339840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):126, 52

               
               
               Conread position:1-269
               
               
               Cow position:chr20:28440765-28441048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):187, 0

               
               
               Conread position:1-269
               
               
               Cow position:chr20:31077031-31077312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):118, 9

               
               
               Conread position:1-269
               
               
               Cow position:chr20:35036532-35036250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:1-269
               
               
               Cow position:chr20:40058237-40058531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):106, 271

               
               
               Conread position:1-270
               
               
               Cow position:chr20:12839551-12839836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-270
               
               
               Cow position:chr20:13505848-13505563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-270
               
               
               Cow position:chr20:23792096-23792382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:1-284
               
               
               Cow position:chr20:5538878-5539181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):107, 178

               
               
               Conread position:1-284
               
               
               Cow position:chr20:10468568-10468866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-284
               
               
               Cow position:chr20:25297091-25296792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-285
               
               
               Cow position:chr20:17845453-17845744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):159, 106

               
               
               Conread position:1-287
               
               
               Cow position:chr20:24567538-24567236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-289
               
               
               Cow position:chr20:29844534-29844841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):77, 27

               
               
               Conread position:1-289
               
               
               Cow position:chr20:39425657-39425357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):110, 25

               
               
               Conread position:1-293
               
               
               Cow position:chr20:28888375-28888683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):119, 91

               
               
               Conread position:1-301
               
               
               Cow position:chr20:20471214-20471527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:236
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-302
               
               
               Cow position:chr20:3294267-3293951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):67, 107

               
               
               Conread position:1-302
               
               
               Cow position:chr20:14512430-14512744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):83, 107

               
               
               Conread position:1-303
               
               
               Cow position:chr20:22006949-22007264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-305
               
               
               Cow position:chr20:21019059-21019381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):93, 106

               
               
               Conread position:1-306
               
               
               Cow position:chr20:12442202-12441874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):123, 22

               
               
               Conread position:2-142
               
               
               Cow position:chr20:28560160-28560020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):111, 83

               
               
               Conread position:2-188
               
               
               Cow position:chr20:12783165-12783353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-260
               
               
               Cow position:chr20:14210654-14210393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):189, 62

               
               
               Conread position:2-261
               
               
               Cow position:chr20:41308794-41309062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):186, 122

               
               
               Conread position:2-262
               
               
               Cow position:chr20:34776622-34776905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):106, 184

               
               
               Conread position:2-269
               
               
               Cow position:chr20:35128710-35128991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-284
               
               
               Cow position:chr20:35145502-35145802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:224
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):123, 26

               
               
               Conread position:2-290
               
               
               Cow position:chr20:40512299-40511990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):32, 96

               
               
               Conread position:2-304
               
               
               Cow position:chr20:5025858-5025542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):122, 36

               
               
               Conread position:3-188
               
               
               Cow position:chr20:28067891-28067705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):121, 25

               
               
               Conread position:3-263
               
               
               Cow position:chr20:39875794-39875520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):121, 67

               
               
               Conread position:3-268
               
               
               Cow position:chr20:9411081-9411357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-268
               
               
               Cow position:chr20:12996520-12996233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:213
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:3-268
               
               
               Cow position:chr20:16449198-16449474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):127, 25

               
               
               Conread position:3-268
               
               
               Cow position:chr20:19155432-19155134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):68, 108

               
               
               Conread position:3-269
               
               
               Cow position:chr20:5077691-5077973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):114, 104

               
               
               Conread position:3-284
               
               
               Cow position:chr20:8429246-8429540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:213
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):122, 104

               
               
               Conread position:4-265
               
               
               Cow position:chr20:10759989-10759714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):119, 74

               
               
               Conread position:4-269
               
               
               Cow position:chr20:25162593-25162333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):206, 103

               
               
               Conread position:4-276
               
               
               Cow position:chr20:10913838-10913549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 103

               
               
               Conread position:4-292
               
               
               Cow position:chr20:3599902-3599595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:230
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):71, 81

               
               
               Conread position:6-270
               
               
               Cow position:chr20:22446139-22445858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):113, 92

               
               
               Conread position:6-303
               
               
               Cow position:chr20:34099557-34099252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 101

               
               
               Conread position:7-178
               
               
               Cow position:chr20:13574823-13574651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):116, 153

               
               
               Conread position:9-151
               
               
               Cow position:chr20:30488514-30488658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:9-264
               
               
               Cow position:chr20:9701051-9701322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):115, 98

               
               
               Conread position:9-266
               
               
               Cow position:chr20:5181401-5181679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:12-269
               
               
               Cow position:chr20:4672430-4672708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):21, 27

               
               
               Conread position:16-265
               
               
               Cow position:chr20:19352259-19351988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):108, 91

               
               
               Conread position:16-286
               
               
               Cow position:chr20:14866642-14866356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):107, 270

               
               
               Conread position:17-269
               
               
               Cow position:chr20:22313647-22313383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):107, 90

               
               
               Conread position:18-265
               
               
               Cow position:chr20:42137896-42138148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):106, 89

               
               
               Conread position:18-270
               
               
               Cow position:chr20:6096972-6096707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):106, 18

               
               
               Conread position:18-282
               
               
               Cow position:chr20:6477247-6477517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):106, 89

               
               
               Conread position:19-268
               
               
               Cow position:chr20:10235363-10235628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):105, 89

               
               
               Conread position:21-188
               
               
               Cow position:chr20:34836351-34836182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):103, 86

               
               
               Conread position:23-290
               
               
               Cow position:chr20:22850631-22850917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):101, 84

               
               
               Conread position:25-268
               
               
               Cow position:chr20:12206588-12206334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):92, 82

               
               
               Conread position:28-268
               
               
               Cow position:chr20:26683868-26683613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):8, 96

               
               
               Conread position:29-274
               
               
               Cow position:chr20:39418358-39418110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):95, 14

               
               
               Conread position:30-268
               
               
               Cow position:chr20:32846875-32847128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):94, 77

               
               
               Conread position:30-269
               
               
               Cow position:chr20:5668985-5668725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):94, 77

               
               
               Conread position:33-265
               
               
               Cow position:chr20:11614518-11614270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):90, 74

               
               
               Conread position:33-270
               
               
               Cow position:chr20:18550876-18551117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):156, 77

               
               
               Conread position:38-268
               
               
               Cow position:chr20:19653772-19653526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):86, 69

               
               
               Conread position:41-189
               
               
               Cow position:chr20:12584953-12584803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):83, 67

               
               
               Conread position:41-267
               
               
               Cow position:chr20:4950887-4950645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:41-268
               
               
               Cow position:chr20:9659700-9659933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):73, 149

               
               
               Conread position:41-268
               
               
               Cow position:chr20:39742845-39743090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):37, 61

               
               
               Conread position:41-301
               
               
               Cow position:chr20:24209511-24209789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):89, 65

               
               
               Conread position:42-268
               
               
               Cow position:chr20:4746428-4746186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):88, 65

               
               
               Conread position:45-269
               
               
               Cow position:chr20:13269164-13269402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:46-268
               
               
               Cow position:chr20:9014810-9014572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):78, 61

               
               
               Conread position:46-269
               
               
               Cow position:chr20:1191430-1191669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):78, 61

               
               
               Conread position:47-270
               
               
               Cow position:chr20:26469537-26469300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):75, 60

               
               
               Conread position:55-269
               
               
               Cow position:chr20:36883443-36883667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:61-292
               
               
               Cow position:chr20:6848160-6848393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):49, 83

               
               
               Conread position:62-296
               
               
               Cow position:chr20:20935346-20935112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:179
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):62, 45

               
               
               Conread position:69-265
               
               
               Cow position:chr20:10178533-10178338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):55, 27

               
               
               Conread position:77-268
               
               
               Cow position:chr20:13267859-13267657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):47, 30

               
               
               Conread position:88-269
               
               
               Cow position:chr20:34001809-34001619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:94-268
               
               
               Cow position:chr20:8101444-8101271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):20, 108

               
               
               Conread position:1-186
               
               
               Cow position:chr21:2767990-2767803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-186
               
               
               Cow position:chr21:4812490-4812303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1-186
               
               
               Cow position:chr21:17459207-17459024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:1-186
               
               
               Cow position:chr21:26829723-26829534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1-187
               
               
               Cow position:chr21:17454919-17455105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):122, 64

               
               
               Conread position:1-187
               
               
               Cow position:chr21:17694954-17694765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-187
               
               
               Cow position:chr21:21971415-21971228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:148
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:1-188
               
               
               Cow position:chr21:21908067-21907876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:160
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 108

               
               
               Conread position:1-188
               
               
               Cow position:chr21:38450168-38449979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-189
               
               
               Cow position:chr21:8126272-8126082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):39, 107

               
               
               Conread position:1-193
               
               
               Cow position:chr21:13752127-13752320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:1-196
               
               
               Cow position:chr21:28617120-28617313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):123, 24

               
               
               Conread position:1-196
               
               
               Cow position:chr21:32560124-32559927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:157
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):124, 106

               
               
               Conread position:1-210
               
               
               Cow position:chr21:38917750-38917965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-249
               
               
               Cow position:chr21:6623663-6623926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-254
               
               
               Cow position:chr21:17208011-17208276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):129, 27

               
               
               Conread position:1-256
               
               
               Cow position:chr21:45331457-45331204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):120, 95

               
               
               Conread position:1-258
               
               
               Cow position:chr21:4282349-4282076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):122, 40

               
               
               Conread position:1-258
               
               
               Cow position:chr21:4585832-4585562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):123, 52

               
               
               Conread position:1-258
               
               
               Cow position:chr21:5595177-5595451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-258
               
               
               Cow position:chr21:23293640-23293368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-259
               
               
               Cow position:chr21:18289178-18289451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-260
               
               
               Cow position:chr21:2366861-2367129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):123, 83

               
               
               Conread position:1-260
               
               
               Cow position:chr21:13111283-13111008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:205
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-261
               
               
               Cow position:chr21:35573364-35573097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):131, 27

               
               
               Conread position:1-262
               
               
               Cow position:chr21:27230276-27230001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):123, 46

               
               
               Conread position:1-262
               
               
               Cow position:chr21:34835941-34835663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:212
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-262
               
               
               Cow position:chr21:36756122-36756405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-263
               
               
               Cow position:chr21:3047179-3047456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):123, 52

               
               
               Conread position:1-263
               
               
               Cow position:chr21:3920698-3920420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-263
               
               
               Cow position:chr21:10000768-10000497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 25

               
               
               Conread position:1-263
               
               
               Cow position:chr21:33415277-33414999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-263
               
               
               Cow position:chr21:44219743-44220027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr21:18601183-18601453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):35, 20

               
               
               Conread position:1-264
               
               
               Cow position:chr21:20588545-20588824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr21:31512428-31512148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:1-265
               
               
               Cow position:chr21:2472932-2472653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):129, 37

               
               
               Conread position:1-265
               
               
               Cow position:chr21:4473504-4473226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr21:4905455-4905173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-265
               
               
               Cow position:chr21:4998969-4998691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 18

               
               
               Conread position:1-265
               
               
               Cow position:chr21:12153649-12153927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:205
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):113, 120

               
               
               Conread position:1-265
               
               
               Cow position:chr21:14727570-14727842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 97

               
               
               Conread position:1-265
               
               
               Cow position:chr21:22464303-22464584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-265
               
               
               Cow position:chr21:23683052-23683344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):53, 110

               
               
               Conread position:1-265
               
               
               Cow position:chr21:24130601-24130875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:204
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):92, 27

               
               
               Conread position:1-265
               
               
               Cow position:chr21:31661570-31661855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:1-265
               
               
               Cow position:chr21:32297992-32297708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):59, 111

               
               
               Conread position:1-265
               
               
               Cow position:chr21:37517850-37517571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1-265
               
               
               Cow position:chr21:38900298-38900567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr21:42540707-42540426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:1-265
               
               
               Cow position:chr21:48638227-48637952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:207
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):123, 26

               
               
               Conread position:1-267
               
               
               Cow position:chr21:36297011-36297275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 95

               
               
               Conread position:1-268
               
               
               Cow position:chr21:149990-150273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-268
               
               
               Cow position:chr21:363167-363452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr21:451718-452001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr21:750252-750535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr21:1196381-1196664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr21:1463749-1464030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 18

               
               
               Conread position:1-268
               
               
               Cow position:chr21:1780868-1781149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):129, 105

               
               
               Conread position:1-268
               
               
               Cow position:chr21:2514688-2514971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr21:2877998-2877715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr21:3818624-3818905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):44, 211

               
               
               Conread position:1-268
               
               
               Cow position:chr21:4079873-4080151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 39

               
               
               Conread position:1-268
               
               
               Cow position:chr21:4279150-4279429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 40

               
               
               Conread position:1-268
               
               
               Cow position:chr21:4559229-4558948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):139, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr21:4732700-4732420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):123, 38

               
               
               Conread position:1-268
               
               
               Cow position:chr21:5418387-5418647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):32, 38

               
               
               Conread position:1-268
               
               
               Cow position:chr21:5641994-5641711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-268
               
               
               Cow position:chr21:5840687-5840969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr21:5857622-5857339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr21:7047341-7047060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):123, 92

               
               
               Conread position:1-268
               
               
               Cow position:chr21:7666542-7666259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr21:10075420-10075139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr21:10436684-10436966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr21:10571114-10571397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr21:10624342-10624075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):123, 80

               
               
               Conread position:1-268
               
               
               Cow position:chr21:11353337-11353619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr21:12365901-12366184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr21:13303039-13303326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):76, 111

               
               
               Conread position:1-268
               
               
               Cow position:chr21:13735318-13735035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr21:15545847-15545568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):123, 64

               
               
               Conread position:1-268
               
               
               Cow position:chr21:16278241-16278508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):38, 14

               
               
               Conread position:1-268
               
               
               Cow position:chr21:16695897-16696167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):106, 64

               
               
               Conread position:1-268
               
               
               Cow position:chr21:18574358-18574641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr21:19237232-19237515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr21:19351017-19350735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-268
               
               
               Cow position:chr21:19766362-19766651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr21:20262822-20262537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr21:22719258-22718984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):123, 44

               
               
               Conread position:1-268
               
               
               Cow position:chr21:22856694-22856974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr21:23606185-23606471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr21:26399942-26399658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):19, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr21:26756879-26756598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr21:26875435-26875718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr21:27147708-27147427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):123, 75

               
               
               Conread position:1-268
               
               
               Cow position:chr21:27287819-27288103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr21:27375965-27376246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):123, 48

               
               
               Conread position:1-268
               
               
               Cow position:chr21:28210700-28210982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr21:28477139-28477422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr21:28768920-28768639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr21:29423902-29424186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr21:30966099-30965815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:214
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):123, 175

               
               
               Conread position:1-268
               
               
               Cow position:chr21:33770521-33770804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr21:33983294-33983013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):121, 32

               
               
               Conread position:1-268
               
               
               Cow position:chr21:34074481-34074764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr21:34658553-34658831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:204
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):132, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr21:34684867-34685147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):41, 32

               
               
               Conread position:1-268
               
               
               Cow position:chr21:34738108-34738395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr21:34899839-34899557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr21:34900519-34900802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr21:34909707-34909988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:216
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):123, 35

               
               
               Conread position:1-268
               
               
               Cow position:chr21:36892388-36892105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr21:37298981-37299262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):121, 95

               
               
               Conread position:1-268
               
               
               Cow position:chr21:37924020-37924310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):124, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr21:42443093-42442810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):110, 174

               
               
               Conread position:1-268
               
               
               Cow position:chr21:42558618-42558901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr21:44281319-44281034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-268
               
               
               Cow position:chr21:44657832-44658115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr21:45842159-45841876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):128, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr21:48459355-48459071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-269
               
               
               Cow position:chr21:725374-725092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:214
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr21:2871201-2870918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):121, 35

               
               
               Conread position:1-269
               
               
               Cow position:chr21:5020982-5021266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1-269
               
               
               Cow position:chr21:10045745-10046034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):59, 119

               
               
               Conread position:1-269
               
               
               Cow position:chr21:10854100-10854384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr21:13070350-13070063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):92, 246

               
               
               Conread position:1-269
               
               
               Cow position:chr21:17144660-17144946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):80, 108

               
               
               Conread position:1-269
               
               
               Cow position:chr21:19050971-19050689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):171, 64

               
               
               Conread position:1-269
               
               
               Cow position:chr21:25473016-25473299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr21:27607849-27607565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:1-269
               
               
               Cow position:chr21:27864006-27863721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr21:28259504-28259795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:1-269
               
               
               Cow position:chr21:33209714-33209996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):35, 93

               
               
               Conread position:1-269
               
               
               Cow position:chr21:39486430-39486147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-270
               
               
               Cow position:chr21:2810600-2810315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):42, 107

               
               
               Conread position:1-270
               
               
               Cow position:chr21:33728950-33729232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):122, 42

               
               
               Conread position:1-274
               
               
               Cow position:chr21:13897702-13897996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):73, 114

               
               
               Conread position:1-282
               
               
               Cow position:chr21:24697991-24698293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-282
               
               
               Cow position:chr21:36909331-36909635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):89, 110

               
               
               Conread position:1-284
               
               
               Cow position:chr21:30896933-30897235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-289
               
               
               Cow position:chr21:20910589-20910292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):75, 32

               
               
               Conread position:1-289
               
               
               Cow position:chr21:26744443-26744137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:221
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-290
               
               
               Cow position:chr21:34391452-34391154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-290
               
               
               Cow position:chr21:44861748-44861435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:1-296
               
               
               Cow position:chr21:9711203-9710888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):46, 108

               
               
               Conread position:1-296
               
               
               Cow position:chr21:44073976-44074267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:220
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):178, 27

               
               
               Conread position:1-297
               
               
               Cow position:chr21:2261167-2260849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-300
               
               
               Cow position:chr21:12075888-12075588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:227
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):123, 24

               
               
               Conread position:1-303
               
               
               Cow position:chr21:2927718-2927400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 105

               
               
               Conread position:1-303
               
               
               Cow position:chr21:18846309-18845992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:226
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-303
               
               
               Cow position:chr21:29855188-29855507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-304
               
               
               Cow position:chr21:22855736-22856053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:2-186
               
               
               Cow position:chr21:14293852-14293667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):114, 78

               
               
               Conread position:2-211
               
               
               Cow position:chr21:35437837-35437617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:2-255
               
               
               Cow position:chr21:15584885-15584615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):122, 102

               
               
               Conread position:2-262
               
               
               Cow position:chr21:33420202-33419924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):42, 155

               
               
               Conread position:2-265
               
               
               Cow position:chr21:15742587-15742303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):122, 19

               
               
               Conread position:2-265
               
               
               Cow position:chr21:21785571-21785293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):121, 31

               
               
               Conread position:2-265
               
               
               Cow position:chr21:34254764-34254488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-265
               
               
               Cow position:chr21:45263499-45263227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):113, 11

               
               
               Conread position:2-265
               
               
               Cow position:chr21:48484922-48484646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):121, 48

               
               
               Conread position:2-268
               
               
               Cow position:chr21:11509783-11510063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):122, 26

               
               
               Conread position:2-268
               
               
               Cow position:chr21:21216626-21216344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):78, 72

               
               
               Conread position:2-276
               
               
               Cow position:chr21:5237922-5238211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:214
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):118, 5

               
               
               Conread position:3-249
               
               
               Cow position:chr21:912445-912186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:195
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-265
               
               
               Cow position:chr21:18979339-18979062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:205
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-268
               
               
               Cow position:chr21:3782618-3782897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):121, 30

               
               
               Conread position:3-268
               
               
               Cow position:chr21:36163440-36163166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 104

               
               
               Conread position:3-269
               
               
               Cow position:chr21:13163446-13163709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):118, 25

               
               
               Conread position:3-270
               
               
               Cow position:chr21:3923757-3924041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):93, 105

               
               
               Conread position:3-306
               
               
               Cow position:chr21:31252844-31253162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 97

               
               
               Conread position:4-188
               
               
               Cow position:chr21:18939869-18939683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:5-268
               
               
               Cow position:chr21:47767861-47767586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):108, 92

               
               
               Conread position:6-258
               
               
               Cow position:chr21:27743260-27743528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):116, 101

               
               
               Conread position:7-259
               
               
               Cow position:chr21:28625629-28625895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):114, 100

               
               
               Conread position:7-270
               
               
               Cow position:chr21:21000535-21000251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):117, 106

               
               
               Conread position:8-268
               
               
               Cow position:chr21:44761835-44761559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):116, 99

               
               
               Conread position:11-265
               
               
               Cow position:chr21:684012-684273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):113, 96

               
               
               Conread position:11-268
               
               
               Cow position:chr21:13300672-13300949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):65, 47

               
               
               Conread position:12-269
               
               
               Cow position:chr21:3236055-3236330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):115, 41

               
               
               Conread position:15-268
               
               
               Cow position:chr21:20925977-20925709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):109, 92

               
               
               Conread position:15-268
               
               
               Cow position:chr21:21480651-21480382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):109, 92

               
               
               Conread position:16-268
               
               
               Cow position:chr21:612237-611970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):108, 12

               
               
               Conread position:16-269
               
               
               Cow position:chr21:29839695-29839964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):128, 56

               
               
               Conread position:16-270
               
               
               Cow position:chr21:29942525-29942800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):108, 91

               
               
               Conread position:16-282
               
               
               Cow position:chr21:37352881-37352607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):108, 22

               
               
               Conread position:20-242
               
               
               Cow position:chr21:2293330-2293091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:20-268
               
               
               Cow position:chr21:24606929-24607182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):104, 88

               
               
               Conread position:21-268
               
               
               Cow position:chr21:5649441-5649703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:199
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):103, 68

               
               
               Conread position:22-265
               
               
               Cow position:chr21:642881-643131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):102, 85

               
               
               Conread position:22-268
               
               
               Cow position:chr21:10514347-10514609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):15, 62

               
               
               Conread position:23-188
               
               
               Cow position:chr21:29955712-29955545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):101, 84

               
               
               Conread position:23-268
               
               
               Cow position:chr21:30000046-29999784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):45, 54

               
               
               Conread position:23-283
               
               
               Cow position:chr21:39583945-39583672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):12, 85

               
               
               Conread position:23-291
               
               
               Cow position:chr21:47465828-47465562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):101, 84

               
               
               Conread position:30-266
               
               
               Cow position:chr21:24223004-24222747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 85

               
               
               Conread position:31-265
               
               
               Cow position:chr21:297266-297513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):5, 68

               
               
               Conread position:35-185
               
               
               Cow position:chr21:3381712-3381558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:35-298
               
               
               Cow position:chr21:37706866-37706591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):89, 52

               
               
               Conread position:38-268
               
               
               Cow position:chr21:24297209-24296966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):85, 69

               
               
               Conread position:41-265
               
               
               Cow position:chr21:40128459-40128220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):83, 65

               
               
               Conread position:41-268
               
               
               Cow position:chr21:32447096-32447339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):89, 66

               
               
               Conread position:49-268
               
               
               Cow position:chr21:2420067-2420302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):75, 58

               
               
               Conread position:50-258
               
               
               Cow position:chr21:2657158-2657378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):140, 58

               
               
               Conread position:51-268
               
               
               Cow position:chr21:42914178-42913949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):73, 30

               
               
               Conread position:53-260
               
               
               Cow position:chr21:7717221-7716999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):70, 54

               
               
               Conread position:53-270
               
               
               Cow position:chr21:393588-393820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):71, 54

               
               
               Conread position:61-265
               
               
               Cow position:chr21:45866512-45866730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:67-269
               
               
               Cow position:chr21:11195713-11195929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):57, 40

               
               
               Conread position:68-264
               
               
               Cow position:chr21:19702105-19702317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):56, 39

               
               
               Conread position:70-265
               
               
               Cow position:chr21:9981105-9980899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):54, 37

               
               
               Conread position:71-268
               
               
               Cow position:chr21:33933800-33933587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):53, 43

               
               
               Conread position:78-268
               
               
               Cow position:chr21:31040848-31040642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):47, 29

               
               
               Conread position:79-270
               
               
               Cow position:chr21:5455398-5455187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):44, 28

               
               
               Conread position:91-262
               
               
               Cow position:chr21:42500638-42500822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:94-268
               
               
               Cow position:chr21:40244041-40244231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):30, 13

               
               
               Conread position:101-303
               
               
               Cow position:chr21:8451458-8451679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:125-268
               
               
               Cow position:chr21:42190518-42190370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):63, 94

               
               
               Conread position:1-155
               
               
               Cow position:chr22:9148662-9148821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:1-184
               
               
               Cow position:chr22:34750039-34750223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-184
               
               
               Cow position:chr22:43788689-43788510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):123, 49

               
               
               Conread position:1-185
               
               
               Cow position:chr22:645284-645102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1-185
               
               
               Cow position:chr22:31593595-31593407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):122, 20

               
               
               Conread position:1-186
               
               
               Cow position:chr22:6425655-6425468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-186
               
               
               Cow position:chr22:6713436-6713259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:1-186
               
               
               Cow position:chr22:39601935-39602122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):124, 107

               
               
               Conread position:1-188
               
               
               Cow position:chr22:4292230-4292416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):121, 90

               
               
               Conread position:1-188
               
               
               Cow position:chr22:13768938-13769122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):68, 107

               
               
               Conread position:1-188
               
               
               Cow position:chr22:14638971-14638782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):134, 106

               
               
               Conread position:1-188
               
               
               Cow position:chr22:34900381-34900573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):13, 109

               
               
               Conread position:1-188
               
               
               Cow position:chr22:37144288-37144479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):86, 108

               
               
               Conread position:1-189
               
               
               Cow position:chr22:42995060-42995250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-192
               
               
               Cow position:chr22:1521804-1521612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):126, 46

               
               
               Conread position:1-192
               
               
               Cow position:chr22:34442199-34442006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):79, 100

               
               
               Conread position:1-196
               
               
               Cow position:chr22:799535-799733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:156
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):67, 107

               
               
               Conread position:1-198
               
               
               Cow position:chr22:6721623-6721424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):122, 107

               
               
               Conread position:1-211
               
               
               Cow position:chr22:7156462-7156680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-248
               
               
               Cow position:chr22:22862102-22861845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-250
               
               
               Cow position:chr22:15869337-15869602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:200
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-250
               
               
               Cow position:chr22:36564160-36563894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:197
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:1-253
               
               
               Cow position:chr22:36587501-36587232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:202
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-257
               
               
               Cow position:chr22:10685632-10685360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):38, 107

               
               
               Conread position:1-257
               
               
               Cow position:chr22:46611382-46611109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):124, 73

               
               
               Conread position:1-258
               
               
               Cow position:chr22:1342199-1342462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-258
               
               
               Cow position:chr22:1874170-1874442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-258
               
               
               Cow position:chr22:6928898-6929170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):41, 27

               
               
               Conread position:1-258
               
               
               Cow position:chr22:13859866-13860124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):67, 95

               
               
               Conread position:1-258
               
               
               Cow position:chr22:14816970-14816700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):21, 120

               
               
               Conread position:1-258
               
               
               Cow position:chr22:18021569-18021298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-258
               
               
               Cow position:chr22:25912378-25912651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):119, 106

               
               
               Conread position:1-258
               
               
               Cow position:chr22:40121417-40121142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):116, 106

               
               
               Conread position:1-258
               
               
               Cow position:chr22:40590345-40590614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 103

               
               
               Conread position:1-260
               
               
               Cow position:chr22:6622799-6622523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):67, 107

               
               
               Conread position:1-261
               
               
               Cow position:chr22:27577180-27577456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:204
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-261
               
               
               Cow position:chr22:40720836-40720564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-262
               
               
               Cow position:chr22:26167129-26166850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):63, 109

               
               
               Conread position:1-263
               
               
               Cow position:chr22:1325881-1326145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):190, 28

               
               
               Conread position:1-263
               
               
               Cow position:chr22:9370552-9370828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:1-263
               
               
               Cow position:chr22:13017334-13017056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-263
               
               
               Cow position:chr22:21502184-21502461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):123, 97

               
               
               Conread position:1-263
               
               
               Cow position:chr22:23803238-23802958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):22, 108

               
               
               Conread position:1-263
               
               
               Cow position:chr22:25942929-25943206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):115, 161

               
               
               Conread position:1-263
               
               
               Cow position:chr22:36583180-36582904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:205
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):128, 53

               
               
               Conread position:1-264
               
               
               Cow position:chr22:556662-556387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):181, 120

               
               
               Conread position:1-264
               
               
               Cow position:chr22:4120118-4119842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:201
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):188, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr22:5041782-5042054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):122, 70

               
               
               Conread position:1-264
               
               
               Cow position:chr22:5930661-5930382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr22:8283430-8283709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):122, 107

               
               
               Conread position:1-264
               
               
               Cow position:chr22:10906539-10906256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):32, 110

               
               
               Conread position:1-264
               
               
               Cow position:chr22:25659086-25658809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):123, 62

               
               
               Conread position:1-264
               
               
               Cow position:chr22:36357861-36358140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:206
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-264
               
               
               Cow position:chr22:43557472-43557196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):123, 86

               
               
               Conread position:1-265
               
               
               Cow position:chr22:3251540-3251259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):80, 107

               
               
               Conread position:1-265
               
               
               Cow position:chr22:4076442-4076171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr22:5281954-5282235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):32, 79

               
               
               Conread position:1-265
               
               
               Cow position:chr22:8329007-8329276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr22:9269870-9270150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1-265
               
               
               Cow position:chr22:11697974-11697690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):128, 105

               
               
               Conread position:1-265
               
               
               Cow position:chr22:12968585-12968326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):128, 32

               
               
               Conread position:1-265
               
               
               Cow position:chr22:19600130-19599853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-265
               
               
               Cow position:chr22:22278760-22279040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr22:26081456-26081175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):36, 113

               
               
               Conread position:1-265
               
               
               Cow position:chr22:31870801-31870524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):123, 38

               
               
               Conread position:1-265
               
               
               Cow position:chr22:32709942-32709662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr22:33094008-33094288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 77

               
               
               Conread position:1-265
               
               
               Cow position:chr22:34597389-34597659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):114, 19

               
               
               Conread position:1-265
               
               
               Cow position:chr22:36575373-36575098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):165, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr22:39033017-39033297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr22:41271539-41271263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-266
               
               
               Cow position:chr22:7302403-7302117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-267
               
               
               Cow position:chr22:28785782-28786063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):112, 173

               
               
               Conread position:1-267
               
               
               Cow position:chr22:30954487-30954768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:210
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-268
               
               
               Cow position:chr22:779827-780107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):32, 38

               
               
               Conread position:1-268
               
               
               Cow position:chr22:898211-898488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:212
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):123, 93

               
               
               Conread position:1-268
               
               
               Cow position:chr22:994774-995058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr22:3270160-3269890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):121, 65

               
               
               Conread position:1-268
               
               
               Cow position:chr22:4645231-4645507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):189, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr22:5364296-5364008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):35, 111

               
               
               Conread position:1-268
               
               
               Cow position:chr22:5368731-5369014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr22:6173265-6172992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr22:6286061-6285778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-268
               
               
               Cow position:chr22:6340317-6340604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr22:7303824-7303541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr22:8411973-8412254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr22:8733114-8732831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):124, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr22:8773336-8773053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr22:8840045-8840317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):123, 97

               
               
               Conread position:1-268
               
               
               Cow position:chr22:10602844-10603123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):126, 20

               
               
               Conread position:1-268
               
               
               Cow position:chr22:10650209-10649926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):64, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr22:10920414-10920134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr22:11231627-11231344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr22:11612875-11613158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):122, 109

               
               
               Conread position:1-268
               
               
               Cow position:chr22:11643260-11642979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr22:11753983-11753701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr22:12225237-12224954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr22:13210043-13210329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr22:13234983-13235266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):123, 93

               
               
               Conread position:1-268
               
               
               Cow position:chr22:13688663-13688382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):113, 169

               
               
               Conread position:1-268
               
               
               Cow position:chr22:13950627-13950902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr22:14807925-14808208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr22:15049608-15049897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr22:15059418-15059702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr22:15067859-15068138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr22:15308291-15308008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr22:15537792-15538075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 175

               
               
               Conread position:1-268
               
               
               Cow position:chr22:15951999-15951716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-268
               
               
               Cow position:chr22:16044984-16044699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):108, 28

               
               
               Conread position:1-268
               
               
               Cow position:chr22:17324832-17324549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr22:18807570-18807292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):121, 32

               
               
               Conread position:1-268
               
               
               Cow position:chr22:18811250-18810972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):121, 32

               
               
               Conread position:1-268
               
               
               Cow position:chr22:19340651-19340930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:1-268
               
               
               Cow position:chr22:19597297-19597014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr22:19712719-19712446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):178, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr22:21593079-21593362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr22:22048530-22048247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr22:22107713-22107993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr22:22155049-22155331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):79, 39

               
               
               Conread position:1-268
               
               
               Cow position:chr22:22563340-22563623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:211
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr22:25336822-25337106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):129, 175

               
               
               Conread position:1-268
               
               
               Cow position:chr22:28939213-28939496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr22:28996638-28996356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):123, 75

               
               
               Conread position:1-268
               
               
               Cow position:chr22:29397751-29398034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr22:29464557-29464836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):32, 39

               
               
               Conread position:1-268
               
               
               Cow position:chr22:29501423-29501701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:207
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):129, 35

               
               
               Conread position:1-268
               
               
               Cow position:chr22:30190410-30190691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr22:31316210-31316493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr22:31331202-31330921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):112, 129

               
               
               Conread position:1-268
               
               
               Cow position:chr22:32488009-32487728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):129, 54

               
               
               Conread position:1-268
               
               
               Cow position:chr22:33448635-33448356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):123, 52

               
               
               Conread position:1-268
               
               
               Cow position:chr22:33901628-33901345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):122, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr22:34172121-34172404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr22:36193316-36193591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr22:36857904-36857623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:214
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr22:37535656-37535373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):50, 76

               
               
               Conread position:1-268
               
               
               Cow position:chr22:37829647-37829380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):112, 186

               
               
               Conread position:1-268
               
               
               Cow position:chr22:39254847-39255129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:213
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr22:39464869-39464586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr22:39472926-39472646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 103

               
               
               Conread position:1-268
               
               
               Cow position:chr22:40374050-40374336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:213
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):75, 110

               
               
               Conread position:1-268
               
               
               Cow position:chr22:41476971-41476691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):123, 22

               
               
               Conread position:1-268
               
               
               Cow position:chr22:42923412-42923129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr22:42934047-42933758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr22:43279811-43279528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr22:44365539-44365256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr22:44496545-44496826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr22:3941728-3942013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1-269
               
               
               Cow position:chr22:6610895-6610621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:205
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):122, 109

               
               
               Conread position:1-269
               
               
               Cow position:chr22:8417920-8418199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:209
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):126, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr22:11137750-11137480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:1-269
               
               
               Cow position:chr22:21192543-21192261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr22:28352232-28351950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):123, 95

               
               
               Conread position:1-269
               
               
               Cow position:chr22:30819276-30818992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):123, 41

               
               
               Conread position:1-269
               
               
               Cow position:chr22:34398988-34398724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:206
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):77, 73

               
               
               Conread position:1-269
               
               
               Cow position:chr22:34605840-34606122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):122, 27

               
               
               Conread position:1-269
               
               
               Cow position:chr22:35903270-35902993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):123, 32

               
               
               Conread position:1-269
               
               
               Cow position:chr22:39695758-39696042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-269
               
               
               Cow position:chr22:41469965-41469677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):32, 38

               
               
               Conread position:1-269
               
               
               Cow position:chr22:42499696-42499415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-270
               
               
               Cow position:chr22:21355704-21355429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):187, 14

               
               
               Conread position:1-270
               
               
               Cow position:chr22:41971706-41971421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):116, 27

               
               
               Conread position:1-273
               
               
               Cow position:chr22:32951908-32952202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:216
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-277
               
               
               Cow position:chr22:29553503-29553210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:215
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:1-278
               
               
               Cow position:chr22:46666040-46665749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:217
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-281
               
               
               Cow position:chr22:865060-864780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):126, 106

               
               
               Conread position:1-283
               
               
               Cow position:chr22:36540228-36539932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:216
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):126, 174

               
               
               Conread position:1-283
               
               
               Cow position:chr22:44936620-44936917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):124, 106

               
               
               Conread position:1-284
               
               
               Cow position:chr22:7436060-7436356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:217
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):187, 46

               
               
               Conread position:1-287
               
               
               Cow position:chr22:25743521-25743215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:221
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:1-289
               
               
               Cow position:chr22:40376229-40376544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:1-294
               
               
               Cow position:chr22:35533931-35533620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:223
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):37, 108

               
               
               Conread position:1-296
               
               
               Cow position:chr22:1591702-1592011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:228
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):123, 64

               
               
               Conread position:1-296
               
               
               Cow position:chr22:8901323-8901612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):62, 37

               
               
               Conread position:1-297
               
               
               Cow position:chr22:32894579-32894881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):122, 38

               
               
               Conread position:1-297
               
               
               Cow position:chr22:33951290-33950976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:233
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-298
               
               
               Cow position:chr22:6493547-6493859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):88, 98

               
               
               Conread position:1-299
               
               
               Cow position:chr22:2624103-2623784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:1-301
               
               
               Cow position:chr22:19140037-19139724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-303
               
               
               Cow position:chr22:3283502-3283194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):67, 37

               
               
               Conread position:1-303
               
               
               Cow position:chr22:12893154-12892839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:231
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):74, 82

               
               
               Conread position:1-303
               
               
               Cow position:chr22:19309250-19308924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):44, 108

               
               
               Conread position:1-305
               
               
               Cow position:chr22:26019030-26018712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):84, 16

               
               
               Conread position:1-306
               
               
               Cow position:chr22:28664418-28664738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):122, 14

               
               
               Conread position:1-306
               
               
               Cow position:chr22:36761062-36761376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):113, 106

               
               
               Conread position:2-188
               
               
               Cow position:chr22:11130326-11130512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):111, 105

               
               
               Conread position:2-196
               
               
               Cow position:chr22:13860846-13861043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):28, 21

               
               
               Conread position:2-197
               
               
               Cow position:chr22:10984876-10985073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):66, 105

               
               
               Conread position:2-265
               
               
               Cow position:chr22:6755498-6755220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):122, 74

               
               
               Conread position:2-265
               
               
               Cow position:chr22:6756860-6756581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-265
               
               
               Cow position:chr22:38439704-38439431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:201
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-265
               
               
               Cow position:chr22:42605081-42605361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):122, 96

               
               
               Conread position:2-265
               
               
               Cow position:chr22:47525149-47525439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:2-268
               
               
               Cow position:chr22:12387800-12388081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):66, 106

               
               
               Conread position:2-268
               
               
               Cow position:chr22:12682329-12682062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 44

               
               
               Conread position:2-268
               
               
               Cow position:chr22:28730971-28731252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:211
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-268
               
               
               Cow position:chr22:35909813-35909532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):122, 53

               
               
               Conread position:2-268
               
               
               Cow position:chr22:37290183-37289903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):122, 34

               
               
               Conread position:2-268
               
               
               Cow position:chr22:39707901-39708182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-268
               
               
               Cow position:chr22:43261533-43261819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):122, 63

               
               
               Conread position:2-268
               
               
               Cow position:chr22:45106462-45106189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):34, 26

               
               
               Conread position:2-283
               
               
               Cow position:chr22:34931304-34931008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):122, 45

               
               
               Conread position:2-284
               
               
               Cow position:chr22:2560803-2560507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:221
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):121, 155

               
               
               Conread position:2-303
               
               
               Cow position:chr22:30963562-30963868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):122, 28

               
               
               Conread position:3-183
               
               
               Cow position:chr22:5716884-5717070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):119, 104

               
               
               Conread position:3-188
               
               
               Cow position:chr22:1036536-1036725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):110, 76

               
               
               Conread position:3-188
               
               
               Cow position:chr22:8505351-8505529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:3-188
               
               
               Cow position:chr22:38107155-38107336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):121, 103

               
               
               Conread position:3-260
               
               
               Cow position:chr22:12868599-12868324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):121, 47

               
               
               Conread position:3-264
               
               
               Cow position:chr22:11212138-11211867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):65, 7

               
               
               Conread position:3-265
               
               
               Cow position:chr22:8481106-8481375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):187, 25

               
               
               Conread position:3-268
               
               
               Cow position:chr22:1266490-1266209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:3-268
               
               
               Cow position:chr22:1279934-1279656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):121, 103

               
               
               Conread position:3-268
               
               
               Cow position:chr22:9685472-9685750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):65, 105

               
               
               Conread position:3-268
               
               
               Cow position:chr22:11837752-11837471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):128, 105

               
               
               Conread position:3-268
               
               
               Cow position:chr22:15759812-15760086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-268
               
               
               Cow position:chr22:18600344-18600064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-268
               
               
               Cow position:chr22:27818449-27818730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-268
               
               
               Cow position:chr22:38959931-38959650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-269
               
               
               Cow position:chr22:5015752-5016035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-270
               
               
               Cow position:chr22:5315894-5316178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:3-270
               
               
               Cow position:chr22:41845899-41845616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:5-188
               
               
               Cow position:chr22:6328255-6328068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):29, 94

               
               
               Conread position:5-257
               
               
               Cow position:chr22:10294510-10294771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):189, 6

               
               
               Conread position:5-268
               
               
               Cow position:chr22:18523700-18523432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):106, 155

               
               
               Conread position:5-268
               
               
               Cow position:chr22:46439654-46439373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):119, 34

               
               
               Conread position:6-258
               
               
               Cow position:chr22:1696324-1696578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):207, 87

               
               
               Conread position:6-269
               
               
               Cow position:chr22:3986964-3987243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):123, 102

               
               
               Conread position:7-188
               
               
               Cow position:chr22:27510987-27511166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):117, 57

               
               
               Conread position:7-265
               
               
               Cow position:chr22:29514438-29514177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):77, 102

               
               
               Conread position:7-268
               
               
               Cow position:chr22:41927905-41927626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):29, 21

               
               
               Conread position:7-299
               
               
               Cow position:chr22:29062781-29063098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):26, 32

               
               
               Conread position:8-270
               
               
               Cow position:chr22:44798648-44798368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):112, 45

               
               
               Conread position:9-264
               
               
               Cow position:chr22:32650970-32651231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):181, 27

               
               
               Conread position:9-265
               
               
               Cow position:chr22:6924699-6924972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):115, 98

               
               
               Conread position:9-265
               
               
               Cow position:chr22:17853456-17853189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):115, 19

               
               
               Conread position:10-268
               
               
               Cow position:chr22:26106514-26106788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):114, 29

               
               
               Conread position:11-263
               
               
               Cow position:chr22:32189381-32189113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):113, 96

               
               
               Conread position:14-268
               
               
               Cow position:chr22:12381377-12381629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):110, 93

               
               
               Conread position:16-156
               
               
               Cow position:chr22:31700651-31700508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:16-260
               
               
               Cow position:chr22:33415537-33415288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 92

               
               
               Conread position:17-265
               
               
               Cow position:chr22:39494731-39494477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):173, 90

               
               
               Conread position:17-268
               
               
               Cow position:chr22:26785601-26785869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):107, 90

               
               
               Conread position:18-265
               
               
               Cow position:chr22:876987-877250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:200
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):50, 89

               
               
               Conread position:18-265
               
               
               Cow position:chr22:7280445-7280712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):105, 90

               
               
               Conread position:19-260
               
               
               Cow position:chr22:26315944-26316201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):95, 88

               
               
               Conread position:20-186
               
               
               Cow position:chr22:24734851-24734683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):97, 35

               
               
               Conread position:23-270
               
               
               Cow position:chr22:25246378-25246642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):46, 85

               
               
               Conread position:25-190
               
               
               Cow position:chr22:12804090-12803922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):11, 84

               
               
               Conread position:25-265
               
               
               Cow position:chr22:30268814-30269069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):98, 63

               
               
               Conread position:25-268
               
               
               Cow position:chr22:13241906-13242166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):99, 83

               
               
               Conread position:27-268
               
               
               Cow position:chr22:34726148-34726404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):7, 82

               
               
               Conread position:28-282
               
               
               Cow position:chr22:24911538-24911815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):96, 263

               
               
               Conread position:30-268
               
               
               Cow position:chr22:10323185-10323440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):32, 78

               
               
               Conread position:32-268
               
               
               Cow position:chr22:18258708-18258958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):25, 6

               
               
               Conread position:35-184
               
               
               Cow position:chr22:10301421-10301572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):94, 72

               
               
               Conread position:35-268
               
               
               Cow position:chr22:10302495-10302741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):89, 51

               
               
               Conread position:40-265
               
               
               Cow position:chr22:30689116-30689358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):67, 119

               
               
               Conread position:40-281
               
               
               Cow position:chr22:7153381-7153625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):150, 67

               
               
               Conread position:40-284
               
               
               Cow position:chr22:1848189-1848447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):49, 69

               
               
               Conread position:41-263
               
               
               Cow position:chr22:19241702-19241464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):83, 66

               
               
               Conread position:41-290
               
               
               Cow position:chr22:31213057-31213321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:42-265
               
               
               Cow position:chr22:8357102-8357341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):82, 65

               
               
               Conread position:42-268
               
               
               Cow position:chr22:14894156-14894395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):14, 66

               
               
               Conread position:42-284
               
               
               Cow position:chr22:17074562-17074821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):51, 121

               
               
               Conread position:43-268
               
               
               Cow position:chr22:12637172-12637412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):92, 64

               
               
               Conread position:45-299
               
               
               Cow position:chr22:29037059-29036797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:46-265
               
               
               Cow position:chr22:533925-534160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:47-306
               
               
               Cow position:chr22:5467875-5467598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):76, 60

               
               
               Conread position:48-265
               
               
               Cow position:chr22:45365616-45365849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):76, 59

               
               
               Conread position:48-268
               
               
               Cow position:chr22:17810838-17811074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):76, 59

               
               
               Conread position:52-268
               
               
               Cow position:chr22:3027579-3027811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):72, 55

               
               
               Conread position:52-268
               
               
               Cow position:chr22:34735148-34735380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):72, 55

               
               
               Conread position:53-268
               
               
               Cow position:chr22:44740604-44740836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):71, 54

               
               
               Conread position:54-269
               
               
               Cow position:chr22:27432481-27432249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:59-302
               
               
               Cow position:chr22:2523031-2523285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):64, 49

               
               
               Conread position:67-268
               
               
               Cow position:chr22:12901729-12901946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):57, 40

               
               
               Conread position:67-281
               
               
               Cow position:chr22:26151603-26151378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):57, 24

               
               
               Conread position:67-289
               
               
               Cow position:chr22:15859527-15859759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):57, 40

               
               
               Conread position:69-268
               
               
               Cow position:chr22:18026041-18025827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):55, 39

               
               
               Conread position:79-268
               
               
               Cow position:chr22:23742176-23741974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):44, 28

               
               
               Conread position:84-268
               
               
               Cow position:chr22:10532026-10532226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):40, 23

               
               
               Conread position:94-268
               
               
               Cow position:chr22:28289625-28289815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):30, 13

               
               
               Conread position:100-268
               
               
               Cow position:chr22:6754703-6754521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:1-160
               
               
               Cow position:chr23:14738571-14738730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-183
               
               
               Cow position:chr23:2035265-2035081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-184
               
               
               Cow position:chr23:41285391-41285576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):89, 106

               
               
               Conread position:1-186
               
               
               Cow position:chr23:1941601-1941788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:150
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-186
               
               
               Cow position:chr23:4487304-4487115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):39, 108

               
               
               Conread position:1-186
               
               
               Cow position:chr23:26230778-26230965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-187
               
               
               Cow position:chr23:18650102-18650288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):123, 66

               
               
               Conread position:1-188
               
               
               Cow position:chr23:1696275-1696470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):31, 103

               
               
               Conread position:1-188
               
               
               Cow position:chr23:7844741-7844930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:1-188
               
               
               Cow position:chr23:9222810-9223000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):38, 107

               
               
               Conread position:1-188
               
               
               Cow position:chr23:9598982-9599171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-188
               
               
               Cow position:chr23:10013999-10014187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:1-188
               
               
               Cow position:chr23:26824445-26824633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):123, 52

               
               
               Conread position:1-190
               
               
               Cow position:chr23:2408549-2408360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):123, 56

               
               
               Conread position:1-196
               
               
               Cow position:chr23:1647070-1647268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):88, 108

               
               
               Conread position:1-211
               
               
               Cow position:chr23:32937550-32937332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):123, 94

               
               
               Conread position:1-211
               
               
               Cow position:chr23:32940214-32939993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:1-250
               
               
               Cow position:chr23:36308869-36309127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:195
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):93, 106

               
               
               Conread position:1-257
               
               
               Cow position:chr23:2721381-2721654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-257
               
               
               Cow position:chr23:37198663-37198391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-258
               
               
               Cow position:chr23:344722-344450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):121, 38

               
               
               Conread position:1-258
               
               
               Cow position:chr23:1398578-1398309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):123, 71

               
               
               Conread position:1-258
               
               
               Cow position:chr23:9641967-9641691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):157, 96

               
               
               Conread position:1-261
               
               
               Cow position:chr23:39049955-39049684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):123, 35

               
               
               Conread position:1-263
               
               
               Cow position:chr23:19493517-19493795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr23:15215186-15214911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):113, 75

               
               
               Conread position:1-264
               
               
               Cow position:chr23:16237912-16237625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):101, 27

               
               
               Conread position:1-265
               
               
               Cow position:chr23:4273637-4273913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):110, 12

               
               
               Conread position:1-265
               
               
               Cow position:chr23:4741294-4741009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):123, 109

               
               
               Conread position:1-265
               
               
               Cow position:chr23:5539354-5539081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 107

               
               
               Conread position:1-265
               
               
               Cow position:chr23:7392818-7392551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):189, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr23:13598806-13599080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr23:26941433-26941714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr23:27402798-27403078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr23:39806317-39806595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):113, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr23:573603-573320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr23:772106-772386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):129, 52

               
               
               Conread position:1-268
               
               
               Cow position:chr23:954136-953854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr23:1959791-1960070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr23:2180198-2179912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):126, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr23:2320286-2320001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):100, 176

               
               
               Conread position:1-268
               
               
               Cow position:chr23:2723410-2723693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr23:2791111-2790830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr23:4100542-4100825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr23:4892361-4892644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr23:5441581-5441864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr23:5623916-5623633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr23:8708055-8708339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 175

               
               
               Conread position:1-268
               
               
               Cow position:chr23:9518010-9517727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:215
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr23:11128675-11128967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):105, 253

               
               
               Conread position:1-268
               
               
               Cow position:chr23:11344157-11344439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):123, 35

               
               
               Conread position:1-268
               
               
               Cow position:chr23:11712031-11711766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):201, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr23:11782450-11782733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr23:13408752-13409035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr23:14215570-14215289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr23:15569226-15569509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr23:16072680-16072965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 114

               
               
               Conread position:1-268
               
               
               Cow position:chr23:16495613-16495335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:1-268
               
               
               Cow position:chr23:19056697-19056418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr23:21351291-21351008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr23:22170570-22170853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):32, 39

               
               
               Conread position:1-268
               
               
               Cow position:chr23:24098790-24099073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr23:26741999-26741715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr23:26798232-26797954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr23:26828907-26829190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr23:28084819-28085101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr23:28306509-28306789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr23:28915992-28916275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr23:29447596-29447306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr23:29459617-29459359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):129, 70

               
               
               Conread position:1-268
               
               
               Cow position:chr23:29471647-29471380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):205, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr23:30633927-30633645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):123, 71

               
               
               Conread position:1-268
               
               
               Cow position:chr23:31584966-31585249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr23:31606092-31606375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr23:35284856-35284573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr23:36027588-36027306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr23:38708664-38708944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):10, 163

               
               
               Conread position:1-268
               
               
               Cow position:chr23:39389710-39389999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:214
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):107, 180

               
               
               Conread position:1-269
               
               
               Cow position:chr23:610365-610649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr23:3877515-3877231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):32, 41

               
               
               Conread position:1-269
               
               
               Cow position:chr23:5721534-5721269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):123, 14

               
               
               Conread position:1-269
               
               
               Cow position:chr23:6720823-6720540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):14, 60

               
               
               Conread position:1-269
               
               
               Cow position:chr23:10852507-10852790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):123, 109

               
               
               Conread position:1-269
               
               
               Cow position:chr23:16246196-16246480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-269
               
               
               Cow position:chr23:19002622-19002332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr23:40553477-40553193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr23:40734876-40734591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-270
               
               
               Cow position:chr23:13511189-13511472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):126, 106

               
               
               Conread position:1-281
               
               
               Cow position:chr23:1535781-1536071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):123, 87

               
               
               Conread position:1-284
               
               
               Cow position:chr23:1321735-1321440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):112, 106

               
               
               Conread position:1-284
               
               
               Cow position:chr23:15529249-15529536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):187, 106

               
               
               Conread position:1-284
               
               
               Cow position:chr23:27529821-27529537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):43, 65

               
               
               Conread position:1-284
               
               
               Cow position:chr23:40503038-40502751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 149

               
               
               Conread position:1-284
               
               
               Cow position:chr23:40825447-40825745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):123, 62

               
               
               Conread position:1-286
               
               
               Cow position:chr23:22804181-22804479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-286
               
               
               Cow position:chr23:26305829-26306127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):135, 106

               
               
               Conread position:1-291
               
               
               Cow position:chr23:11209448-11209750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-293
               
               
               Cow position:chr23:2802840-2802549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):124, 39

               
               
               Conread position:1-303
               
               
               Cow position:chr23:31423179-31422857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):123, 75

               
               
               Conread position:1-305
               
               
               Cow position:chr23:33332374-33332052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):123, 175

               
               
               Conread position:2-184
               
               
               Cow position:chr23:7360116-7360303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:2-188
               
               
               Cow position:chr23:3209161-3208975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):34, 26

               
               
               Conread position:2-261
               
               
               Cow position:chr23:33233664-33233391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):47, 17

               
               
               Conread position:2-265
               
               
               Cow position:chr23:1640264-1640543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-265
               
               
               Cow position:chr23:7374334-7374605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 201

               
               
               Conread position:2-268
               
               
               Cow position:chr23:2470050-2470332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-268
               
               
               Cow position:chr23:4636686-4636404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):122, 112

               
               
               Conread position:2-268
               
               
               Cow position:chr23:14575877-14576159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:2-269
               
               
               Cow position:chr23:20586268-20585976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):74, 106

               
               
               Conread position:2-269
               
               
               Cow position:chr23:23885097-23885382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):122, 36

               
               
               Conread position:2-306
               
               
               Cow position:chr23:21395146-21394822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):31, 9

               
               
               Conread position:3-184
               
               
               Cow position:chr23:7596873-7596692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):37, 87

               
               
               Conread position:3-188
               
               
               Cow position:chr23:6173354-6173168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-268
               
               
               Cow position:chr23:671836-672117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:211
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-268
               
               
               Cow position:chr23:13519912-13520193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-268
               
               
               Cow position:chr23:29625884-29626149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-268
               
               
               Cow position:chr23:34315514-34315233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):121, 107

               
               
               Conread position:3-269
               
               
               Cow position:chr23:10554557-10554275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:3-269
               
               
               Cow position:chr23:21276777-21276510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):188, 95

               
               
               Conread position:3-303
               
               
               Cow position:chr23:4517192-4517515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 292

               
               
               Conread position:3-303
               
               
               Cow position:chr23:20057657-20057342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):121, 33

               
               
               Conread position:7-269
               
               
               Cow position:chr23:31277162-31277448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):28, 104

               
               
               Conread position:7-274
               
               
               Cow position:chr23:5416685-5416974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):26, 32

               
               
               Conread position:9-188
               
               
               Cow position:chr23:35937480-35937664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):67, 19

               
               
               Conread position:10-269
               
               
               Cow position:chr23:20001540-20001812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):114, 26

               
               
               Conread position:12-268
               
               
               Cow position:chr23:32052055-32052327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):112, 95

               
               
               Conread position:16-258
               
               
               Cow position:chr23:6366724-6366969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):107, 90

               
               
               Conread position:16-264
               
               
               Cow position:chr23:9268056-9268321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):17, 23

               
               
               Conread position:16-268
               
               
               Cow position:chr23:16610348-16610075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):108, 12

               
               
               Conread position:18-268
               
               
               Cow position:chr23:14191020-14191287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):104, 89

               
               
               Conread position:18-269
               
               
               Cow position:chr23:1337820-1337578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):177, 15

               
               
               Conread position:19-186
               
               
               Cow position:chr23:20605835-20605659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):106, 89

               
               
               Conread position:19-268
               
               
               Cow position:chr23:30656692-30656423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):105, 91

               
               
               Conread position:21-268
               
               
               Cow position:chr23:8959071-8959334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:201
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):15, 71

               
               
               Conread position:23-256
               
               
               Cow position:chr23:31194713-31194464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):101, 35

               
               
               Conread position:23-265
               
               
               Cow position:chr23:3328434-3328178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):50, 16

               
               
               Conread position:23-268
               
               
               Cow position:chr23:1131576-1131840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):12, 85

               
               
               Conread position:23-268
               
               
               Cow position:chr23:19535298-19535037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):101, 84

               
               
               Conread position:23-268
               
               
               Cow position:chr23:25380768-25381029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):107, 84

               
               
               Conread position:23-288
               
               
               Cow position:chr23:18797229-18796949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):100, 84

               
               
               Conread position:25-268
               
               
               Cow position:chr23:33599904-33599643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):99, 71

               
               
               Conread position:31-265
               
               
               Cow position:chr23:406676-406426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):55, 78

               
               
               Conread position:32-264
               
               
               Cow position:chr23:3282902-3282654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:35-265
               
               
               Cow position:chr23:4856149-4855904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):89, 30

               
               
               Conread position:35-265
               
               
               Cow position:chr23:36129414-36129170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):89, 228

               
               
               Conread position:35-270
               
               
               Cow position:chr23:26795732-26795479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):85, 72

               
               
               Conread position:39-249
               
               
               Cow position:chr23:4809724-4809943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):8, 60

               
               
               Conread position:43-263
               
               
               Cow position:chr23:15710585-15710347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):96, 64

               
               
               Conread position:43-303
               
               
               Cow position:chr23:20781262-20781549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):30, 65

               
               
               Conread position:44-295
               
               
               Cow position:chr23:39573799-39573538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):131, 66

               
               
               Conread position:45-265
               
               
               Cow position:chr23:6245438-6245202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):7, 62

               
               
               Conread position:48-268
               
               
               Cow position:chr23:35941727-35941961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):76, 59

               
               
               Conread position:49-265
               
               
               Cow position:chr23:18655386-18655618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):75, 58

               
               
               Conread position:54-278
               
               
               Cow position:chr23:15608394-15608158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):70, 53

               
               
               Conread position:57-269
               
               
               Cow position:chr23:11044691-11044917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:72-264
               
               
               Cow position:chr23:8911002-8911209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):52, 35

               
               
               Conread position:81-268
               
               
               Cow position:chr23:221607-221805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):43, 26

               
               
               Conread position:94-306
               
               
               Cow position:chr23:16665023-16664802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):30, 189

               
               
               Conread position:107-303
               
               
               Cow position:chr23:5420951-5420739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):17, 176

               
               
               Conread position:123-295
               
               
               Cow position:chr23:25678152-25677976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):90, 44

               
               
               Conread position:131-268
               
               
               Cow position:chr23:3192566-3192421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:1-186
               
               
               Cow position:chr24:6102172-6102359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-188
               
               
               Cow position:chr24:15692166-15692355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-188
               
               
               Cow position:chr24:17752495-17752307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):122, 175

               
               
               Conread position:1-188
               
               
               Cow position:chr24:20507291-20507100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):83, 27

               
               
               Conread position:1-188
               
               
               Cow position:chr24:20923004-20923188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:1-188
               
               
               Cow position:chr24:39913842-39914030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):123, 77

               
               
               Conread position:1-189
               
               
               Cow position:chr24:12331950-12331760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:1-189
               
               
               Cow position:chr24:27290303-27290492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:155
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-196
               
               
               Cow position:chr24:5652539-5652342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):124, 106

               
               
               Conread position:1-242
               
               
               Cow position:chr24:17364224-17363977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:189
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):123, 87

               
               
               Conread position:1-256
               
               
               Cow position:chr24:19475534-19475808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):42, 80

               
               
               Conread position:1-256
               
               
               Cow position:chr24:40497976-40497705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):6, 108

               
               
               Conread position:1-258
               
               
               Cow position:chr24:29064216-29063944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):122, 75

               
               
               Conread position:1-258
               
               
               Cow position:chr24:31308847-31309123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):59, 111

               
               
               Conread position:1-258
               
               
               Cow position:chr24:31758543-31758278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):123, 64

               
               
               Conread position:1-259
               
               
               Cow position:chr24:27632816-27633089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):123, 80

               
               
               Conread position:1-260
               
               
               Cow position:chr24:3851352-3851626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):123, 99

               
               
               Conread position:1-260
               
               
               Cow position:chr24:6413235-6413507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):106, 61

               
               
               Conread position:1-260
               
               
               Cow position:chr24:32853966-32854239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):109, 44

               
               
               Conread position:1-261
               
               
               Cow position:chr24:38479527-38479262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 112

               
               
               Conread position:1-262
               
               
               Cow position:chr24:6160658-6160381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-262
               
               
               Cow position:chr24:7744013-7744294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:1-264
               
               
               Cow position:chr24:9088040-9087767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):190, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr24:30484507-30484229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 37

               
               
               Conread position:1-264
               
               
               Cow position:chr24:40466656-40466378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):123, 66

               
               
               Conread position:1-265
               
               
               Cow position:chr24:11006639-11006920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr24:12696367-12696087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:210
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr24:13117389-13117669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):82, 75

               
               
               Conread position:1-265
               
               
               Cow position:chr24:17720663-17720384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):123, 29

               
               
               Conread position:1-265
               
               
               Cow position:chr24:19815657-19815378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):112, 169

               
               
               Conread position:1-265
               
               
               Cow position:chr24:27608707-27608434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):189, 40

               
               
               Conread position:1-265
               
               
               Cow position:chr24:31382126-31382387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):123, 103

               
               
               Conread position:1-265
               
               
               Cow position:chr24:32370490-32370205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):123, 75

               
               
               Conread position:1-266
               
               
               Cow position:chr24:39160115-39159837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr24:144597-144311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr24:2391611-2391900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):123, 64

               
               
               Conread position:1-268
               
               
               Cow position:chr24:6035423-6035141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr24:7782374-7782091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:215
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr24:9550015-9550298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):112, 174

               
               
               Conread position:1-268
               
               
               Cow position:chr24:9901128-9901410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):129, 105

               
               
               Conread position:1-268
               
               
               Cow position:chr24:11081026-11080757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr24:11152106-11152389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr24:11327101-11327395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr24:12090729-12091011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-268
               
               
               Cow position:chr24:12146833-12146551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):122, 150

               
               
               Conread position:1-268
               
               
               Cow position:chr24:12447248-12447517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr24:13178989-13178706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr24:13304743-13304461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):85, 66

               
               
               Conread position:1-268
               
               
               Cow position:chr24:13373751-13373468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr24:14279318-14279596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:1-268
               
               
               Cow position:chr24:14378744-14378472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):121, 75

               
               
               Conread position:1-268
               
               
               Cow position:chr24:14760656-14760939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):106, 37

               
               
               Conread position:1-268
               
               
               Cow position:chr24:15666982-15666701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr24:15793257-15792979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):123, 71

               
               
               Conread position:1-268
               
               
               Cow position:chr24:16558257-16557974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr24:17544204-17543923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):123, 19

               
               
               Conread position:1-268
               
               
               Cow position:chr24:18113212-18113496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):39, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr24:18222738-18222455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr24:18266736-18266463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr24:19679298-19679581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr24:22975566-22975845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):82, 75

               
               
               Conread position:1-268
               
               
               Cow position:chr24:23616121-23616404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr24:25372859-25373142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr24:26412803-26413086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr24:28494500-28494783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr24:29191040-29191323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr24:29375765-29376040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):82, 75

               
               
               Conread position:1-268
               
               
               Cow position:chr24:29679880-29679603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):121, 226

               
               
               Conread position:1-268
               
               
               Cow position:chr24:31302442-31302730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):77, 59

               
               
               Conread position:1-268
               
               
               Cow position:chr24:32213251-32212961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):42, 10

               
               
               Conread position:1-268
               
               
               Cow position:chr24:32361102-32360819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):86, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr24:32609065-32609347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):170, 119

               
               
               Conread position:1-268
               
               
               Cow position:chr24:32740172-32739903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):112, 157

               
               
               Conread position:1-268
               
               
               Cow position:chr24:33230094-33230375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):123, 108

               
               
               Conread position:1-268
               
               
               Cow position:chr24:33622056-33621777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:1-268
               
               
               Cow position:chr24:33639741-33639458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr24:33938612-33938893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):110, 49

               
               
               Conread position:1-268
               
               
               Cow position:chr24:35793605-35793888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr24:35823171-35822888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:214
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr24:36722157-36722440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):122, 52

               
               
               Conread position:1-268
               
               
               Cow position:chr24:36780173-36780456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-268
               
               
               Cow position:chr24:38588535-38588817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):113, 153

               
               
               Conread position:1-268
               
               
               Cow position:chr24:39217199-39216916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr24:39482929-39483185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):123, 35

               
               
               Conread position:1-268
               
               
               Cow position:chr24:40149640-40149358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):113, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr24:40382081-40381799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr24:40427937-40427652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):78, 115

               
               
               Conread position:1-269
               
               
               Cow position:chr24:6449964-6450242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):189, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr24:12348489-12348774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:1-269
               
               
               Cow position:chr24:16654248-16653964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr24:24137425-24137153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):123, 97

               
               
               Conread position:1-269
               
               
               Cow position:chr24:28601302-28601021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-269
               
               
               Cow position:chr24:33291746-33291464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):121, 268

               
               
               Conread position:1-270
               
               
               Cow position:chr24:39900892-39900610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):187, 106

               
               
               Conread position:1-272
               
               
               Cow position:chr24:11839611-11839893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 41

               
               
               Conread position:1-277
               
               
               Cow position:chr24:6067590-6067297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:213
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-277
               
               
               Cow position:chr24:17406825-17407115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):123, 68

               
               
               Conread position:1-277
               
               
               Cow position:chr24:20283455-20283163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-277
               
               
               Cow position:chr24:30870212-30869924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):82, 27

               
               
               Conread position:1-277
               
               
               Cow position:chr24:32693132-32693424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 48

               
               
               Conread position:1-277
               
               
               Cow position:chr24:38814399-38814693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:1-285
               
               
               Cow position:chr24:45216688-45216394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:224
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):123, 15

               
               
               Conread position:1-289
               
               
               Cow position:chr24:10243805-10243504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-291
               
               
               Cow position:chr24:40056294-40055982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:228
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:1-296
               
               
               Cow position:chr24:25111002-25111313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):88, 107

               
               
               Conread position:1-297
               
               
               Cow position:chr24:17860839-17860536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):196, 106

               
               
               Conread position:1-298
               
               
               Cow position:chr24:17834018-17833704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):123, 39

               
               
               Conread position:1-299
               
               
               Cow position:chr24:31815980-31816288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:232
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-302
               
               
               Cow position:chr24:34761266-34761584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):128, 27

               
               
               Conread position:1-303
               
               
               Cow position:chr24:45004355-45004672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):88, 75

               
               
               Conread position:1-306
               
               
               Cow position:chr24:16557227-16556909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:232
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):123, 97

               
               
               Conread position:1-306
               
               
               Cow position:chr24:18971079-18970770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):41, 108

               
               
               Conread position:1-306
               
               
               Cow position:chr24:21265068-21264753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:236
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):197, 69

               
               
               Conread position:2-264
               
               
               Cow position:chr24:35067037-35066758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:2-265
               
               
               Cow position:chr24:37037041-37037323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-268
               
               
               Cow position:chr24:14146117-14145847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-268
               
               
               Cow position:chr24:27153895-27153613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:3-178
               
               
               Cow position:chr24:45009943-45010118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):85, 13

               
               
               Conread position:3-268
               
               
               Cow position:chr24:6141521-6141247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):121, 25

               
               
               Conread position:3-268
               
               
               Cow position:chr24:22193154-22193434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-268
               
               
               Cow position:chr24:36555400-36555119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:209
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-270
               
               
               Cow position:chr24:24250152-24250435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-286
               
               
               Cow position:chr24:28721319-28721606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:217
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):187, 46

               
               
               Conread position:4-264
               
               
               Cow position:chr24:33239123-33238844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 103

               
               
               Conread position:4-265
               
               
               Cow position:chr24:31811620-31811893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):120, 24

               
               
               Conread position:4-268
               
               
               Cow position:chr24:16611020-16610741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:4-268
               
               
               Cow position:chr24:27503157-27502876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:4-269
               
               
               Cow position:chr24:19885987-19886267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):120, 103

               
               
               Conread position:7-185
               
               
               Cow position:chr24:6154262-6154444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:7-268
               
               
               Cow position:chr24:6436225-6436501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):117, 100

               
               
               Conread position:9-265
               
               
               Cow position:chr24:27905868-27906134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):115, 24

               
               
               Conread position:9-268
               
               
               Cow position:chr24:6340467-6340726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):114, 91

               
               
               Conread position:10-267
               
               
               Cow position:chr24:36710588-36710848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):17, 7

               
               
               Conread position:10-269
               
               
               Cow position:chr24:27148851-27149117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):188, 40

               
               
               Conread position:12-268
               
               
               Cow position:chr24:40035327-40035055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):5, 11

               
               
               Conread position:16-250
               
               
               Cow position:chr24:40771559-40771809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:16-268
               
               
               Cow position:chr24:21769891-21770159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):108, 12

               
               
               Conread position:17-293
               
               
               Cow position:chr24:18604630-18604914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):107, 30

               
               
               Conread position:18-260
               
               
               Cow position:chr24:35872483-35872224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):106, 18

               
               
               Conread position:18-268
               
               
               Cow position:chr24:23052124-23051862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):173, 105

               
               
               Conread position:19-268
               
               
               Cow position:chr24:599918-599653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):111, 88

               
               
               Conread position:20-265
               
               
               Cow position:chr24:29073232-29072971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):104, 87

               
               
               Conread position:20-303
               
               
               Cow position:chr24:3332788-3332493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):141, 88

               
               
               Conread position:21-268
               
               
               Cow position:chr24:9070986-9070726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):21, 41

               
               
               Conread position:23-261
               
               
               Cow position:chr24:27053041-27052790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):98, 84

               
               
               Conread position:24-269
               
               
               Cow position:chr24:29596357-29596101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):100, 83

               
               
               Conread position:28-268
               
               
               Cow position:chr24:20024065-20024316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 80

               
               
               Conread position:29-188
               
               
               Cow position:chr24:34396687-34396525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:35-268
               
               
               Cow position:chr24:15880877-15881126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):94, 72

               
               
               Conread position:35-269
               
               
               Cow position:chr24:39238260-39238506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):89, 27

               
               
               Conread position:35-297
               
               
               Cow position:chr24:33943862-33944126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:200
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):87, 72

               
               
               Conread position:38-264
               
               
               Cow position:chr24:39219372-39219141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):149, 43

               
               
               Conread position:38-268
               
               
               Cow position:chr24:16541381-16541135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):85, 69

               
               
               Conread position:38-270
               
               
               Cow position:chr24:28336081-28335831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):56, 43

               
               
               Conread position:41-268
               
               
               Cow position:chr24:13819404-13819650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:41-269
               
               
               Cow position:chr24:19836965-19837208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):83, 66

               
               
               Conread position:42-277
               
               
               Cow position:chr24:27747881-27748126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):82, 56

               
               
               Conread position:44-188
               
               
               Cow position:chr24:31357329-31357475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 29

               
               
               Conread position:46-268
               
               
               Cow position:chr24:18847388-18847616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:46-274
               
               
               Cow position:chr24:7001597-7001354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):78, 61

               
               
               Conread position:47-268
               
               
               Cow position:chr24:35815681-35815444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):83, 60

               
               
               Conread position:53-268
               
               
               Cow position:chr24:9616481-9616264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):71, 54

               
               
               Conread position:56-268
               
               
               Cow position:chr24:33379536-33379764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):67, 52

               
               
               Conread position:61-268
               
               
               Cow position:chr24:29360491-29360269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):63, 46

               
               
               Conread position:62-214
               
               
               Cow position:chr24:20225381-20225220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):62, 45

               
               
               Conread position:67-268
               
               
               Cow position:chr24:27754184-27754405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):57, 41

               
               
               Conread position:69-265
               
               
               Cow position:chr24:36174281-36174077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):54, 167

               
               
               Conread position:72-268
               
               
               Cow position:chr24:24002475-24002687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):52, 35

               
               
               Conread position:74-302
               
               
               Cow position:chr24:33052799-33052558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):50, 33

               
               
               Conread position:80-256
               
               
               Cow position:chr24:8814505-8814314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:211-303
               
               
               Cow position:chr24:18974813-18974906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:94
               
               
               Alignm identity:80
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:1-118
               
               
               Cow position:chr25:30601641-30601524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-180
               
               
               Cow position:chr25:41135304-41135123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-182
               
               
               Cow position:chr25:32849752-32849570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):115, 106

               
               
               Conread position:1-186
               
               
               Cow position:chr25:5823917-5824103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-186
               
               
               Cow position:chr25:14568882-14569068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):123, 44

               
               
               Conread position:1-188
               
               
               Cow position:chr25:23829667-23829478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-188
               
               
               Cow position:chr25:33466419-33466608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):124, 109

               
               
               Conread position:1-190
               
               
               Cow position:chr25:2516751-2516938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):123, 56

               
               
               Conread position:1-197
               
               
               Cow position:chr25:23356955-23357155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):20, 108

               
               
               Conread position:1-211
               
               
               Cow position:chr25:20786081-20785862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):123, 97

               
               
               Conread position:1-254
               
               
               Cow position:chr25:12755984-12755714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-255
               
               
               Cow position:chr25:11666116-11666385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):122, 107

               
               
               Conread position:1-255
               
               
               Cow position:chr25:23394316-23394581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):130, 105

               
               
               Conread position:1-258
               
               
               Cow position:chr25:9595767-9596037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-258
               
               
               Cow position:chr25:24779050-24779319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 109

               
               
               Conread position:1-258
               
               
               Cow position:chr25:27543555-27543285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):123, 103

               
               
               Conread position:1-260
               
               
               Cow position:chr25:17682327-17682051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):37, 66

               
               
               Conread position:1-261
               
               
               Cow position:chr25:30279758-30279484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):123, 56

               
               
               Conread position:1-262
               
               
               Cow position:chr25:18072662-18072929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):188, 95

               
               
               Conread position:1-263
               
               
               Cow position:chr25:36149340-36149062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):69, 75

               
               
               Conread position:1-264
               
               
               Cow position:chr25:11540578-11540840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr25:33978959-33978681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:1-265
               
               
               Cow position:chr25:11896041-11895758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):101, 179

               
               
               Conread position:1-265
               
               
               Cow position:chr25:13429673-13429397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):121, 46

               
               
               Conread position:1-265
               
               
               Cow position:chr25:18490525-18490800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:206
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):123, 75

               
               
               Conread position:1-265
               
               
               Cow position:chr25:25826904-25827189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 75

               
               
               Conread position:1-265
               
               
               Cow position:chr25:29335933-29336218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):34, 107

               
               
               Conread position:1-265
               
               
               Cow position:chr25:35612884-35612605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):123, 22

               
               
               Conread position:1-265
               
               
               Cow position:chr25:41097743-41097465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):40, 32

               
               
               Conread position:1-265
               
               
               Cow position:chr25:41356349-41356069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-266
               
               
               Cow position:chr25:17562518-17562798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-267
               
               
               Cow position:chr25:36871306-36871589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):114, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr25:2110538-2110814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):112, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr25:2595435-2595720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):160, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr25:4858044-4857761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr25:7068974-7069257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr25:7717393-7717676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr25:8120225-8120508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr25:10896279-10895996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr25:12943577-12943294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr25:13955936-13955653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr25:13960513-13960798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-268
               
               
               Cow position:chr25:14755961-14755688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):178, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr25:16136608-16136887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):124, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr25:16922342-16922061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):123, 49

               
               
               Conread position:1-268
               
               
               Cow position:chr25:17553816-17553532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr25:17599044-17598763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:1-268
               
               
               Cow position:chr25:17658066-17658346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 47

               
               
               Conread position:1-268
               
               
               Cow position:chr25:17659018-17659288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):187, 94

               
               
               Conread position:1-268
               
               
               Cow position:chr25:17994844-17994561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-268
               
               
               Cow position:chr25:18181572-18181845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):177, 60

               
               
               Conread position:1-268
               
               
               Cow position:chr25:18323905-18323622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr25:18486928-18487207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr25:18886030-18885749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):123, 92

               
               
               Conread position:1-268
               
               
               Cow position:chr25:20394647-20394938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr25:24654721-24654438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr25:25754549-25754264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):43, 108

               
               
               Conread position:1-268
               
               
               Cow position:chr25:26282478-26282761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr25:26353312-26353031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr25:26682015-26682296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):121, 97

               
               
               Conread position:1-268
               
               
               Cow position:chr25:26923297-26923580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr25:28920329-28920598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):42, 108

               
               
               Conread position:1-268
               
               
               Cow position:chr25:32278581-32278298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr25:33838827-33839119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):54, 14

               
               
               Conread position:1-268
               
               
               Cow position:chr25:33959795-33959529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):201, 108

               
               
               Conread position:1-268
               
               
               Cow position:chr25:33990214-33989933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr25:34343456-34343167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):110, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr25:34502233-34501950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr25:34659650-34659373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:208
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):82, 75

               
               
               Conread position:1-268
               
               
               Cow position:chr25:35446394-35446677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr25:35589523-35589806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr25:36351192-36351475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr25:36392515-36392233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr25:36765847-36765564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-268
               
               
               Cow position:chr25:38439609-38439893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr25:39386381-39386100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr25:41121458-41121740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr25:2624095-2624375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):83, 18

               
               
               Conread position:1-269
               
               
               Cow position:chr25:8572421-8572138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 67

               
               
               Conread position:1-269
               
               
               Cow position:chr25:13332867-13333155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:209
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-269
               
               
               Cow position:chr25:17992693-17992409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-269
               
               
               Cow position:chr25:18189925-18189641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-269
               
               
               Cow position:chr25:20634066-20634333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr25:28274993-28274711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 65

               
               
               Conread position:1-269
               
               
               Cow position:chr25:28863323-28863607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr25:34013305-34013022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):32, 38

               
               
               Conread position:1-269
               
               
               Cow position:chr25:34164108-34163824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr25:35567436-35567154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):113, 174

               
               
               Conread position:1-270
               
               
               Cow position:chr25:41364518-41364246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):129, 105

               
               
               Conread position:1-275
               
               
               Cow position:chr25:13962258-13962548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1-277
               
               
               Cow position:chr25:4488186-4488476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):113, 77

               
               
               Conread position:1-279
               
               
               Cow position:chr25:25480185-25479889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:1-283
               
               
               Cow position:chr25:18310223-18310516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-284
               
               
               Cow position:chr25:25510343-25510642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):110, 297

               
               
               Conread position:1-286
               
               
               Cow position:chr25:15005655-15005957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:222
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):123, 29

               
               
               Conread position:1-291
               
               
               Cow position:chr25:11584962-11585264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:221
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):116, 88

               
               
               Conread position:1-293
               
               
               Cow position:chr25:27510814-27510504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 265

               
               
               Conread position:1-297
               
               
               Cow position:chr25:19131483-19131788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:228
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):122, 27

               
               
               Conread position:1-306
               
               
               Cow position:chr25:35608273-35607952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):32, 41

               
               
               Conread position:2-265
               
               
               Cow position:chr25:10580639-10580360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-303
               
               
               Cow position:chr25:35625784-35625470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):113, 89

               
               
               Conread position:3-270
               
               
               Cow position:chr25:11956284-11956560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):121, 53

               
               
               Conread position:5-268
               
               
               Cow position:chr25:26939824-26940103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:205
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):124, 102

               
               
               Conread position:7-188
               
               
               Cow position:chr25:14808563-14808746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):117, 100

               
               
               Conread position:7-268
               
               
               Cow position:chr25:4522362-4522086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):122, 74

               
               
               Conread position:8-259
               
               
               Cow position:chr25:14954571-14954303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):24, 101

               
               
               Conread position:10-188
               
               
               Cow position:chr25:24669904-24669721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):81, 5

               
               
               Conread position:11-268
               
               
               Cow position:chr25:21041279-21041551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):113, 96

               
               
               Conread position:14-286
               
               
               Cow position:chr25:15368150-15368424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):110, 14

               
               
               Conread position:15-269
               
               
               Cow position:chr25:29312854-29312575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):35, 96

               
               
               Conread position:18-266
               
               
               Cow position:chr25:9268633-9268897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):52, 90

               
               
               Conread position:20-188
               
               
               Cow position:chr25:11929095-11928919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:21-265
               
               
               Cow position:chr25:22413010-22412751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):60, 54

               
               
               Conread position:21-269
               
               
               Cow position:chr25:24572539-24572804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):102, 57

               
               
               Conread position:23-184
               
               
               Cow position:chr25:598803-598966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):99, 84

               
               
               Conread position:23-268
               
               
               Cow position:chr25:26111754-26112013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):101, 84

               
               
               Conread position:26-269
               
               
               Cow position:chr25:23571511-23571264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):14, 87

               
               
               Conread position:27-265
               
               
               Cow position:chr25:22314681-22314929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):97, 37

               
               
               Conread position:29-265
               
               
               Cow position:chr25:22550116-22549886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):160, 78

               
               
               Conread position:33-303
               
               
               Cow position:chr25:24168448-24168159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):89, 116

               
               
               Conread position:35-264
               
               
               Cow position:chr25:40906794-40906549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):88, 72

               
               
               Conread position:35-268
               
               
               Cow position:chr25:11437320-11437071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:191
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):89, 72

               
               
               Conread position:40-268
               
               
               Cow position:chr25:34000171-34000416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:42-267
               
               
               Cow position:chr25:9349775-9349527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):81, 68

               
               
               Conread position:42-268
               
               
               Cow position:chr25:36778988-36779227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):83, 19

               
               
               Conread position:45-269
               
               
               Cow position:chr25:16002261-16002024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):63, 46

               
               
               Conread position:49-265
               
               
               Cow position:chr25:3992286-3992518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):75, 58

               
               
               Conread position:62-265
               
               
               Cow position:chr25:13787460-13787679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):62, 45

               
               
               Conread position:67-265
               
               
               Cow position:chr25:18294801-18294586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):57, 40

               
               
               Conread position:75-181
               
               
               Cow position:chr25:16400919-16400812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):48, 77

               
               
               Conread position:78-297
               
               
               Cow position:chr25:13736878-13736644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):46, 32

               
               
               Conread position:84-269
               
               
               Cow position:chr25:26654439-26654639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):40, 23

               
               
               Conread position:87-269
               
               
               Cow position:chr25:22530822-22531019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):37, 20

               
               
               Conread position:1-170
               
               
               Cow position:chr26:20746898-20747069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):122, 158

               
               
               Conread position:1-184
               
               
               Cow position:chr26:31889261-31889444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):112, 60

               
               
               Conread position:1-186
               
               
               Cow position:chr26:20058998-20059184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):32, 38

               
               
               Conread position:1-188
               
               
               Cow position:chr26:1328999-1329182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:1-188
               
               
               Cow position:chr26:8308044-8307857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):118, 22

               
               
               Conread position:1-189
               
               
               Cow position:chr26:2987583-2987394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):123, 60

               
               
               Conread position:1-189
               
               
               Cow position:chr26:15559196-15559387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):123, 175

               
               
               Conread position:1-192
               
               
               Cow position:chr26:28320208-28320016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:155
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):118, 105

               
               
               Conread position:1-214
               
               
               Cow position:chr26:11129612-11129390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-249
               
               
               Cow position:chr26:27930865-27930601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):123, 75

               
               
               Conread position:1-258
               
               
               Cow position:chr26:32671030-32670754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:1-260
               
               
               Cow position:chr26:6030294-6030018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):61, 107

               
               
               Conread position:1-261
               
               
               Cow position:chr26:6514274-6514551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-262
               
               
               Cow position:chr26:14173768-14174040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):119, 106

               
               
               Conread position:1-263
               
               
               Cow position:chr26:2676549-2676272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr26:6037970-6037694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):122, 21

               
               
               Conread position:1-264
               
               
               Cow position:chr26:8034324-8034603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:207
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr26:11337958-11338231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:208
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):113, 83

               
               
               Conread position:1-264
               
               
               Cow position:chr26:13706521-13706242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-264
               
               
               Cow position:chr26:21539103-21539381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):122, 80

               
               
               Conread position:1-265
               
               
               Cow position:chr26:8404883-8405163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr26:11537535-11537815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr26:14291294-14291570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):122, 60

               
               
               Conread position:1-265
               
               
               Cow position:chr26:15561500-15561222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):123, 40

               
               
               Conread position:1-265
               
               
               Cow position:chr26:20182224-20182510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr26:28236651-28236931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:208
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr26:1636704-1636423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr26:2226800-2227083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr26:3564332-3564053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr26:3571330-3571047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr26:6430277-6430559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):106, 21

               
               
               Conread position:1-268
               
               
               Cow position:chr26:6840990-6840708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr26:6843512-6843230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr26:7950999-7951282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr26:8084536-8084819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr26:9100282-9100001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr26:11875701-11875420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):113, 156

               
               
               Conread position:1-268
               
               
               Cow position:chr26:12808046-12807764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):131, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr26:12965171-12964902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):190, 73

               
               
               Conread position:1-268
               
               
               Cow position:chr26:13773971-13774249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 95

               
               
               Conread position:1-268
               
               
               Cow position:chr26:14395768-14395485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr26:14951686-14951402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):43, 80

               
               
               Conread position:1-268
               
               
               Cow position:chr26:17002214-17002478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):211, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr26:17327873-17328161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:208
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):32, 112

               
               
               Conread position:1-268
               
               
               Cow position:chr26:18383708-18383426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):123, 55

               
               
               Conread position:1-268
               
               
               Cow position:chr26:21397903-21397620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr26:21909259-21908976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr26:22711611-22711890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr26:22831329-22831046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr26:23890113-23890396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr26:24226957-24226677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):123, 109

               
               
               Conread position:1-268
               
               
               Cow position:chr26:24239405-24239693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):67, 109

               
               
               Conread position:1-268
               
               
               Cow position:chr26:26286569-26286858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):72, 119

               
               
               Conread position:1-268
               
               
               Cow position:chr26:26670684-26670406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):39, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr26:29433942-29434225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr26:30569420-30569131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:217
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):31, 113

               
               
               Conread position:1-268
               
               
               Cow position:chr26:30786636-30786919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr26:30807045-30806762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr26:31462348-31462623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:209
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):124, 72

               
               
               Conread position:1-268
               
               
               Cow position:chr26:32682592-32682864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):189, 34

               
               
               Conread position:1-268
               
               
               Cow position:chr26:34265674-34265957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr26:35560353-35560070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr26:377816-377532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr26:9082759-9082480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:204
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr26:15214693-15214972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-269
               
               
               Cow position:chr26:16584864-16585141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:203
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):37, 107

               
               
               Conread position:1-269
               
               
               Cow position:chr26:19796848-19797132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:1-269
               
               
               Cow position:chr26:20256328-20256596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:198
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):122, 155

               
               
               Conread position:1-269
               
               
               Cow position:chr26:22692095-22692377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr26:25393495-25393783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 75

               
               
               Conread position:1-269
               
               
               Cow position:chr26:34083307-34083589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):123, 22

               
               
               Conread position:1-269
               
               
               Cow position:chr26:35424207-35424493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1-270
               
               
               Cow position:chr26:3706272-3706554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):107, 5

               
               
               Conread position:1-270
               
               
               Cow position:chr26:15201254-15200973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:214
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-270
               
               
               Cow position:chr26:21012822-21013111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):43, 34

               
               
               Conread position:1-270
               
               
               Cow position:chr26:23315415-23315129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:1-276
               
               
               Cow position:chr26:3096939-3096647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-276
               
               
               Cow position:chr26:28442545-28442252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:212
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-281
               
               
               Cow position:chr26:32318222-32317929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-284
               
               
               Cow position:chr26:1341087-1341385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):123, 20

               
               
               Conread position:1-284
               
               
               Cow position:chr26:26282305-26282603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):107, 8

               
               
               Conread position:1-287
               
               
               Cow position:chr26:9867659-9867360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):188, 122

               
               
               Conread position:1-292
               
               
               Cow position:chr26:19698480-19698172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):118, 75

               
               
               Conread position:1-301
               
               
               Cow position:chr26:2610363-2610046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):123, 276

               
               
               Conread position:1-305
               
               
               Cow position:chr26:32866441-32866131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):156, 32

               
               
               Conread position:2-262
               
               
               Cow position:chr26:13271209-13270934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:204
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):135, 56

               
               
               Conread position:2-268
               
               
               Cow position:chr26:14897799-14898078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:2-269
               
               
               Cow position:chr26:1106872-1107159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:215
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:2-280
               
               
               Cow position:chr26:15631698-15631997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):122, 75

               
               
               Conread position:3-258
               
               
               Cow position:chr26:11361961-11361692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):121, 58

               
               
               Conread position:3-265
               
               
               Cow position:chr26:22659578-22659301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-269
               
               
               Cow position:chr26:8352427-8352710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:4-122
               
               
               Cow position:chr26:16508776-16508894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:4-268
               
               
               Cow position:chr26:16720388-16720668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):119, 103

               
               
               Conread position:7-265
               
               
               Cow position:chr26:20130606-20130329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):116, 11

               
               
               Conread position:7-292
               
               
               Cow position:chr26:10491238-10491543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):117, 14

               
               
               Conread position:10-269
               
               
               Cow position:chr26:6714808-6714532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:209
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):114, 97

               
               
               Conread position:11-268
               
               
               Cow position:chr26:31794252-31794529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):113, 95

               
               
               Conread position:15-268
               
               
               Cow position:chr26:24280185-24280442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):109, 33

               
               
               Conread position:16-303
               
               
               Cow position:chr26:25442462-25442164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):108, 92

               
               
               Conread position:20-268
               
               
               Cow position:chr26:16861948-16861684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):63, 56

               
               
               Conread position:23-301
               
               
               Cow position:chr26:13801574-13801865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):100, 68

               
               
               Conread position:28-269
               
               
               Cow position:chr26:818959-818713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):96, 19

               
               
               Conread position:32-258
               
               
               Cow position:chr26:13976171-13975929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):92, 75

               
               
               Conread position:33-269
               
               
               Cow position:chr26:16796722-16796479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):91, 74

               
               
               Conread position:36-211
               
               
               Cow position:chr26:20299057-20298872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):83, 71

               
               
               Conread position:36-270
               
               
               Cow position:chr26:35524077-35523828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:37-196
               
               
               Cow position:chr26:27064180-27064017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:38-268
               
               
               Cow position:chr26:13183165-13182922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):86, 69

               
               
               Conread position:41-269
               
               
               Cow position:chr26:6448098-6447856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):83, 66

               
               
               Conread position:41-305
               
               
               Cow position:chr26:34314095-34314375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):79, 66

               
               
               Conread position:42-301
               
               
               Cow position:chr26:14079957-14080238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:43-265
               
               
               Cow position:chr26:8897381-8897143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):81, 53

               
               
               Conread position:44-268
               
               
               Cow position:chr26:7150946-7150707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):80, 63

               
               
               Conread position:50-304
               
               
               Cow position:chr26:829082-829344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):8, 58

               
               
               Conread position:51-269
               
               
               Cow position:chr26:14486517-14486283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):73, 56

               
               
               Conread position:53-268
               
               
               Cow position:chr26:3026299-3026068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):71, 55

               
               
               Conread position:54-268
               
               
               Cow position:chr26:29006513-29006742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):70, 42

               
               
               Conread position:78-270
               
               
               Cow position:chr26:19447892-19447684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):46, 29

               
               
               Conread position:81-268
               
               
               Cow position:chr26:3757337-3757540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):43, 26

               
               
               Conread position:85-268
               
               
               Cow position:chr26:30724824-30724625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):39, 29

               
               
               Conread position:1-177
               
               
               Cow position:chr27:27683528-27683703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):120, 20

               
               
               Conread position:1-183
               
               
               Cow position:chr27:3231873-3231691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:1-188
               
               
               Cow position:chr27:27930928-27931117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-253
               
               
               Cow position:chr27:1502158-1502424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-258
               
               
               Cow position:chr27:1123522-1123251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):123, 69

               
               
               Conread position:1-258
               
               
               Cow position:chr27:11470195-11470468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:204
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-258
               
               
               Cow position:chr27:30921657-30921384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:201
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-260
               
               
               Cow position:chr27:5990387-5990113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):135, 106

               
               
               Conread position:1-260
               
               
               Cow position:chr27:19523045-19522769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):41, 27

               
               
               Conread position:1-260
               
               
               Cow position:chr27:29446440-29446167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:205
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-262
               
               
               Cow position:chr27:536963-536686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):123, 144

               
               
               Conread position:1-262
               
               
               Cow position:chr27:26087728-26087460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-263
               
               
               Cow position:chr27:4664982-4664700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):115, 22

               
               
               Conread position:1-264
               
               
               Cow position:chr27:12277771-12278052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr27:3989115-3988836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr27:4719395-4719669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):123, 19

               
               
               Conread position:1-265
               
               
               Cow position:chr27:5836486-5836773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):92, 75

               
               
               Conread position:1-265
               
               
               Cow position:chr27:8262504-8262783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):27, 42

               
               
               Conread position:1-265
               
               
               Cow position:chr27:9090294-9090575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):123, 68

               
               
               Conread position:1-265
               
               
               Cow position:chr27:11434827-11435105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):123, 25

               
               
               Conread position:1-265
               
               
               Cow position:chr27:15315994-15315715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:208
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):126, 105

               
               
               Conread position:1-265
               
               
               Cow position:chr27:17396948-17397229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:1-265
               
               
               Cow position:chr27:21408045-21408322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):123, 60

               
               
               Conread position:1-265
               
               
               Cow position:chr27:26142300-26142020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr27:29085476-29085734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):160, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr27:30418165-30417900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):123, 97

               
               
               Conread position:1-268
               
               
               Cow position:chr27:526575-526857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):123, 32

               
               
               Conread position:1-268
               
               
               Cow position:chr27:1189307-1189590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr27:1636445-1636721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-268
               
               
               Cow position:chr27:2332165-2332444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr27:2557329-2557035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr27:2627566-2627849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr27:3239505-3239789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):126, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr27:4768985-4769263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):178, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr27:4882114-4881831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr27:5853411-5853695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):123, 78

               
               
               Conread position:1-268
               
               
               Cow position:chr27:5861711-5861428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):125, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr27:6074420-6074139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):122, 80

               
               
               Conread position:1-268
               
               
               Cow position:chr27:7958334-7958612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):123, 16

               
               
               Conread position:1-268
               
               
               Cow position:chr27:8201601-8201880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:203
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr27:8743438-8743155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr27:9989216-9988930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr27:10384095-10384379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):47, 98

               
               
               Conread position:1-268
               
               
               Cow position:chr27:10579608-10579886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr27:11403414-11403131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):135, 113

               
               
               Conread position:1-268
               
               
               Cow position:chr27:11481596-11481877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:1-268
               
               
               Cow position:chr27:12549615-12549332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-268
               
               
               Cow position:chr27:12751194-12751466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 222

               
               
               Conread position:1-268
               
               
               Cow position:chr27:14381099-14381383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):14, 108

               
               
               Conread position:1-268
               
               
               Cow position:chr27:15178719-15178436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr27:15272412-15272129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr27:15312704-15312421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):129, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr27:15643951-15644234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr27:15867887-15867610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):122, 24

               
               
               Conread position:1-268
               
               
               Cow position:chr27:16045395-16045678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr27:16823311-16823037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):123, 52

               
               
               Conread position:1-268
               
               
               Cow position:chr27:16984301-16984010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:218
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr27:18621306-18621023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr27:19146347-19146632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr27:19423711-19423427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):19, 171

               
               
               Conread position:1-268
               
               
               Cow position:chr27:20001151-20000868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr27:20811081-20811364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-268
               
               
               Cow position:chr27:20858783-20859066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr27:21349242-21349525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):32, 38

               
               
               Conread position:1-268
               
               
               Cow position:chr27:21393004-21393281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):121, 46

               
               
               Conread position:1-268
               
               
               Cow position:chr27:22549284-22549559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):41, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr27:23658226-23658510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):38, 32

               
               
               Conread position:1-268
               
               
               Cow position:chr27:24295595-24295313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):82, 75

               
               
               Conread position:1-268
               
               
               Cow position:chr27:26436198-26436474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr27:26545420-26545700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):106, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr27:26598381-26598098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr27:26631463-26631191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):189, 21

               
               
               Conread position:1-268
               
               
               Cow position:chr27:26785476-26785759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr27:26856705-26856988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr27:26934870-26935150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):178, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr27:27558004-27558277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):28, 36

               
               
               Conread position:1-268
               
               
               Cow position:chr27:28984431-28984718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr27:29234911-29234626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:210
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr27:13409661-13409946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:1-269
               
               
               Cow position:chr27:14669874-14670160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):116, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr27:15349300-15349581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:212
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):122, 35

               
               
               Conread position:1-270
               
               
               Cow position:chr27:2900736-2901020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-270
               
               
               Cow position:chr27:8291510-8291789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):123, 44

               
               
               Conread position:1-270
               
               
               Cow position:chr27:10324270-10323985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):124, 109

               
               
               Conread position:1-270
               
               
               Cow position:chr27:13876231-13875949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-272
               
               
               Cow position:chr27:1293912-1294199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):112, 174

               
               
               Conread position:1-275
               
               
               Cow position:chr27:13317459-13317749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-276
               
               
               Cow position:chr27:13198406-13198122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:214
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):123, 32

               
               
               Conread position:1-276
               
               
               Cow position:chr27:23454637-23454935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:1-277
               
               
               Cow position:chr27:24999231-24999524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-284
               
               
               Cow position:chr27:8973110-8973409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-284
               
               
               Cow position:chr27:15033227-15032928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-287
               
               
               Cow position:chr27:1354103-1353798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-303
               
               
               Cow position:chr27:344266-343949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):82, 8

               
               
               Conread position:1-303
               
               
               Cow position:chr27:4389704-4390023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-303
               
               
               Cow position:chr27:4835081-4835387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):165, 42

               
               
               Conread position:1-303
               
               
               Cow position:chr27:6620700-6620385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):35, 29

               
               
               Conread position:1-303
               
               
               Cow position:chr27:13638461-13638775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-303
               
               
               Cow position:chr27:22559584-22559269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 175

               
               
               Conread position:2-258
               
               
               Cow position:chr27:20765445-20765711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):69, 45

               
               
               Conread position:2-263
               
               
               Cow position:chr27:815870-815593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:2-263
               
               
               Cow position:chr27:12239811-12240088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-268
               
               
               Cow position:chr27:20799077-20799359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-268
               
               
               Cow position:chr27:29811967-29812249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):125, 105

               
               
               Conread position:2-274
               
               
               Cow position:chr27:13901789-13902077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):105, 173

               
               
               Conread position:2-294
               
               
               Cow position:chr27:21452110-21452430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):105, 309

               
               
               Conread position:3-265
               
               
               Cow position:chr27:10274955-10275236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:211
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):69, 107

               
               
               Conread position:3-268
               
               
               Cow position:chr27:13442334-13442615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-268
               
               
               Cow position:chr27:16787339-16787055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:207
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):57, 30

               
               
               Conread position:4-258
               
               
               Cow position:chr27:27019600-27019870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):120, 92

               
               
               Conread position:4-287
               
               
               Cow position:chr27:10306770-10307070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):125, 102

               
               
               Conread position:5-269
               
               
               Cow position:chr27:10085364-10085638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:6-262
               
               
               Cow position:chr27:9372006-9371729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:7-262
               
               
               Cow position:chr27:25885470-25885736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):121, 31

               
               
               Conread position:7-265
               
               
               Cow position:chr27:13976894-13977164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):115, 100

               
               
               Conread position:7-265
               
               
               Cow position:chr27:16337536-16337264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):114, 100

               
               
               Conread position:7-269
               
               
               Cow position:chr27:16428324-16428611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):50, 102

               
               
               Conread position:7-285
               
               
               Cow position:chr27:23128952-23128660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:214
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):117, 100

               
               
               Conread position:8-248
               
               
               Cow position:chr27:25676766-25676509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):124, 102

               
               
               Conread position:13-265
               
               
               Cow position:chr27:22107762-22108035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):111, 56

               
               
               Conread position:16-268
               
               
               Cow position:chr27:15927265-15926995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):89, 148

               
               
               Conread position:16-269
               
               
               Cow position:chr27:16620479-16620211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):16, 32

               
               
               Conread position:18-258
               
               
               Cow position:chr27:31230605-31230862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):106, 89

               
               
               Conread position:18-277
               
               
               Cow position:chr27:23511608-23511332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):44, 90

               
               
               Conread position:19-265
               
               
               Cow position:chr27:4983113-4983375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:25-186
               
               
               Cow position:chr27:5464342-5464178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):11, 83

               
               
               Conread position:25-195
               
               
               Cow position:chr27:25809041-25809213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):99, 82

               
               
               Conread position:25-267
               
               
               Cow position:chr27:8048202-8048463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):11, 58

               
               
               Conread position:28-303
               
               
               Cow position:chr27:263479-263767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):96, 79

               
               
               Conread position:29-188
               
               
               Cow position:chr27:4673493-4673332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):95, 78

               
               
               Conread position:29-190
               
               
               Cow position:chr27:25719210-25719375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:30-284
               
               
               Cow position:chr27:23502939-23502668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):94, 269

               
               
               Conread position:35-268
               
               
               Cow position:chr27:11255989-11255736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:37-305
               
               
               Cow position:chr27:28036456-28036725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):87, 46

               
               
               Conread position:38-274
               
               
               Cow position:chr27:17763888-17763638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):86, 39

               
               
               Conread position:41-268
               
               
               Cow position:chr27:14297894-14298137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):83, 66

               
               
               Conread position:41-268
               
               
               Cow position:chr27:18446127-18446358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):139, 35

               
               
               Conread position:42-284
               
               
               Cow position:chr27:9337978-9337722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):73, 65

               
               
               Conread position:43-265
               
               
               Cow position:chr27:26239708-26239471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):80, 217

               
               
               Conread position:43-268
               
               
               Cow position:chr27:11422386-11422605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):166, 64

               
               
               Conread position:46-268
               
               
               Cow position:chr27:1173083-1173320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:48-263
               
               
               Cow position:chr27:26223802-26224041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):76, 59

               
               
               Conread position:48-268
               
               
               Cow position:chr27:14125300-14125536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):76, 59

               
               
               Conread position:51-263
               
               
               Cow position:chr27:21418539-21418766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):73, 56

               
               
               Conread position:53-265
               
               
               Cow position:chr27:20629482-20629254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):70, 55

               
               
               Conread position:58-303
               
               
               Cow position:chr27:6019258-6019518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):69, 49

               
               
               Conread position:60-283
               
               
               Cow position:chr27:30177128-30177361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):64, 47

               
               
               Conread position:67-268
               
               
               Cow position:chr27:22440582-22440365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):57, 40

               
               
               Conread position:68-268
               
               
               Cow position:chr27:2569822-2570038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):56, 39

               
               
               Conread position:82-268
               
               
               Cow position:chr27:22654952-22655154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):42, 25

               
               
               Conread position:92-263
               
               
               Cow position:chr27:18558775-18558608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):102, 23

               
               
               Conread position:104-268
               
               
               Cow position:chr27:26313797-26313976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:1-171
               
               
               Cow position:chr28:4586435-4586604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1-179
               
               
               Cow position:chr28:19023622-19023442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-181
               
               
               Cow position:chr28:12935563-12935390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1-184
               
               
               Cow position:chr28:330099-329916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):123, 64

               
               
               Conread position:1-184
               
               
               Cow position:chr28:13889284-13889099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-184
               
               
               Cow position:chr28:21672270-21672454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-186
               
               
               Cow position:chr28:3161627-3161440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:1-186
               
               
               Cow position:chr28:10534477-10534291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-188
               
               
               Cow position:chr28:11776490-11776675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:1-196
               
               
               Cow position:chr28:16387027-16387227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):118, 106

               
               
               Conread position:1-244
               
               
               Cow position:chr28:10699514-10699258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-250
               
               
               Cow position:chr28:26682910-26683164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-256
               
               
               Cow position:chr28:15712718-15712991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-258
               
               
               Cow position:chr28:7864787-7865060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):119, 35

               
               
               Conread position:1-258
               
               
               Cow position:chr28:10530008-10529736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:203
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):118, 105

               
               
               Conread position:1-258
               
               
               Cow position:chr28:18933932-18934190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):34, 107

               
               
               Conread position:1-258
               
               
               Cow position:chr28:22304318-22304586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):123, 49

               
               
               Conread position:1-259
               
               
               Cow position:chr28:25805139-25805411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):129, 66

               
               
               Conread position:1-259
               
               
               Cow position:chr28:29726626-29726901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-260
               
               
               Cow position:chr28:6047502-6047777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:1-261
               
               
               Cow position:chr28:7745793-7746068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-262
               
               
               Cow position:chr28:7372795-7372518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-262
               
               
               Cow position:chr28:13935651-13935916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):32, 38

               
               
               Conread position:1-263
               
               
               Cow position:chr28:4535937-4536204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-263
               
               
               Cow position:chr28:11452019-11451741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):56, 107

               
               
               Conread position:1-264
               
               
               Cow position:chr28:5553450-5553191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):123, 42

               
               
               Conread position:1-264
               
               
               Cow position:chr28:17392276-17392555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-264
               
               
               Cow position:chr28:20124243-20124524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):92, 108

               
               
               Conread position:1-265
               
               
               Cow position:chr28:5637761-5638042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):62, 107

               
               
               Conread position:1-265
               
               
               Cow position:chr28:5941198-5941478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr28:7685219-7684941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):114, 95

               
               
               Conread position:1-265
               
               
               Cow position:chr28:14657153-14657431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:206
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr28:15429373-15429657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):123, 22

               
               
               Conread position:1-265
               
               
               Cow position:chr28:21844413-21844692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):123, 97

               
               
               Conread position:1-265
               
               
               Cow position:chr28:25056425-25056707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:1-265
               
               
               Cow position:chr28:25826403-25826127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):68, 107

               
               
               Conread position:1-265
               
               
               Cow position:chr28:26419290-26419010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr28:31142505-31142228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):123, 62

               
               
               Conread position:1-265
               
               
               Cow position:chr28:32717539-32717265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):121, 27

               
               
               Conread position:1-265
               
               
               Cow position:chr28:34082559-34082282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-266
               
               
               Cow position:chr28:33944152-33943871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):92, 176

               
               
               Conread position:1-268
               
               
               Cow position:chr28:1214101-1213810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr28:1508587-1508873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):82, 32

               
               
               Conread position:1-268
               
               
               Cow position:chr28:1575794-1575511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr28:1811285-1811006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr28:1957074-1957357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr28:2645424-2645703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr28:2948998-2949281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr28:3914171-3914449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):121, 29

               
               
               Conread position:1-268
               
               
               Cow position:chr28:4057159-4057437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):131, 104

               
               
               Conread position:1-268
               
               
               Cow position:chr28:5071704-5071421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr28:5684162-5684443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):117, 74

               
               
               Conread position:1-268
               
               
               Cow position:chr28:5747995-5747712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):106, 174

               
               
               Conread position:1-268
               
               
               Cow position:chr28:5768659-5768932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-268
               
               
               Cow position:chr28:6959942-6960235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):114, 185

               
               
               Conread position:1-268
               
               
               Cow position:chr28:7005739-7006022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr28:7698496-7698242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):32, 39

               
               
               Conread position:1-268
               
               
               Cow position:chr28:7830272-7830558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr28:8787017-8787289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):123, 97

               
               
               Conread position:1-268
               
               
               Cow position:chr28:9182580-9182862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr28:10193324-10193041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr28:10578160-10577878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):41, 26

               
               
               Conread position:1-268
               
               
               Cow position:chr28:10772782-10773063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):88, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr28:10900277-10900559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr28:12156390-12156674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):113, 174

               
               
               Conread position:1-268
               
               
               Cow position:chr28:12457628-12457895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):123, 72

               
               
               Conread position:1-268
               
               
               Cow position:chr28:12981095-12980814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr28:14150698-14150973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):55, 14

               
               
               Conread position:1-268
               
               
               Cow position:chr28:15916816-15916534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):123, 52

               
               
               Conread position:1-268
               
               
               Cow position:chr28:16211636-16211358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:205
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr28:16347053-16346777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):114, 64

               
               
               Conread position:1-268
               
               
               Cow position:chr28:17663238-17662955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr28:18516434-18516151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr28:19393325-19393613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):58, 103

               
               
               Conread position:1-268
               
               
               Cow position:chr28:19552676-19552387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):41, 180

               
               
               Conread position:1-268
               
               
               Cow position:chr28:20934688-20934406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr28:21354680-21354963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr28:21894061-21893787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):160, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr28:22132378-22132665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr28:22254482-22254207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:202
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr28:22322708-22323004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):100, 80

               
               
               Conread position:1-268
               
               
               Cow position:chr28:22582492-22582775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr28:23530329-23530603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):189, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr28:23544333-23544609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):129, 28

               
               
               Conread position:1-268
               
               
               Cow position:chr28:23615864-23616141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:207
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):197, 108

               
               
               Conread position:1-268
               
               
               Cow position:chr28:24603636-24603918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr28:24674177-24674459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):123, 95

               
               
               Conread position:1-268
               
               
               Cow position:chr28:25683498-25683215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr28:25726837-25727120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:213
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):123, 18

               
               
               Conread position:1-268
               
               
               Cow position:chr28:26781539-26781822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr28:27478478-27478761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr28:28116321-28116616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr28:28357074-28356792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):121, 66

               
               
               Conread position:1-268
               
               
               Cow position:chr28:28723929-28724211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr28:28934252-28933969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr28:29035940-29035657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):32, 38

               
               
               Conread position:1-268
               
               
               Cow position:chr28:29044080-29044363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr28:29823896-29824179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-268
               
               
               Cow position:chr28:30098587-30098870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr28:30532286-30532004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):110, 84

               
               
               Conread position:1-268
               
               
               Cow position:chr28:32305542-32305259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr28:34597951-34598234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):124, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr28:34731442-34731725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr28:1550551-1550839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):76, 11

               
               
               Conread position:1-269
               
               
               Cow position:chr28:5361559-5361275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:1-269
               
               
               Cow position:chr28:10607154-10606872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr28:22279728-22279442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:210
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):125, 280

               
               
               Conread position:1-269
               
               
               Cow position:chr28:29806733-29806457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):123, 52

               
               
               Conread position:1-269
               
               
               Cow position:chr28:33640280-33640558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:204
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-270
               
               
               Cow position:chr28:4308419-4308157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:204
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-270
               
               
               Cow position:chr28:8717040-8716754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1-270
               
               
               Cow position:chr28:28798832-28798553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):148, 106

               
               
               Conread position:1-277
               
               
               Cow position:chr28:25762495-25762781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):197, 107

               
               
               Conread position:1-281
               
               
               Cow position:chr28:5804974-5805272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-282
               
               
               Cow position:chr28:22308131-22308416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):188, 75

               
               
               Conread position:1-285
               
               
               Cow position:chr28:11826949-11827243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:217
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):123, 69

               
               
               Conread position:1-285
               
               
               Cow position:chr28:14708981-14709267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-285
               
               
               Cow position:chr28:25070558-25070863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-286
               
               
               Cow position:chr28:10473663-10473966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:217
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:1-289
               
               
               Cow position:chr28:4070423-4070726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):118, 44

               
               
               Conread position:1-293
               
               
               Cow position:chr28:7807635-7807927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:1-298
               
               
               Cow position:chr28:12081221-12080907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:230
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-299
               
               
               Cow position:chr28:23793865-23793552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-301
               
               
               Cow position:chr28:19961338-19961659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):57, 98

               
               
               Conread position:1-302
               
               
               Cow position:chr28:24487684-24487369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 55

               
               
               Conread position:1-303
               
               
               Cow position:chr28:10173007-10172687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-306
               
               
               Cow position:chr28:10295644-10295969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):88, 110

               
               
               Conread position:1-306
               
               
               Cow position:chr28:11787251-11786929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 299

               
               
               Conread position:1-306
               
               
               Cow position:chr28:18180677-18180356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):32, 39

               
               
               Conread position:1-306
               
               
               Cow position:chr28:31842227-31841906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:232
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-306
               
               
               Cow position:chr28:33256020-33256341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 14

               
               
               Conread position:2-257
               
               
               Cow position:chr28:4188010-4188257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):114, 45

               
               
               Conread position:2-267
               
               
               Cow position:chr28:28766441-28766172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):38, 31

               
               
               Conread position:2-268
               
               
               Cow position:chr28:7981245-7980964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):121, 41

               
               
               Conread position:2-268
               
               
               Cow position:chr28:14742255-14742539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-268
               
               
               Cow position:chr28:21363224-21363497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):121, 28

               
               
               Conread position:2-270
               
               
               Cow position:chr28:10478870-10478582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):82, 107

               
               
               Conread position:2-306
               
               
               Cow position:chr28:1537141-1537457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 63

               
               
               Conread position:2-306
               
               
               Cow position:chr28:9285907-9285590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:232
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):124, 174

               
               
               Conread position:3-256
               
               
               Cow position:chr28:8371940-8372198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:194
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):117, 104

               
               
               Conread position:3-265
               
               
               Cow position:chr28:17151801-17152075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):22, 109

               
               
               Conread position:3-265
               
               
               Cow position:chr28:28340757-28341033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):10, 14

               
               
               Conread position:3-268
               
               
               Cow position:chr28:26727953-26727673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:3-268
               
               
               Cow position:chr28:28185257-28185541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:3-268
               
               
               Cow position:chr28:32300914-32300627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):121, 105

               
               
               Conread position:3-268
               
               
               Cow position:chr28:34243419-34243701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):37, 105

               
               
               Conread position:3-269
               
               
               Cow position:chr28:786371-786652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):121, 20

               
               
               Conread position:3-286
               
               
               Cow position:chr28:22501021-22500730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:4-268
               
               
               Cow position:chr28:18096436-18096716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):120, 103

               
               
               Conread position:4-279
               
               
               Cow position:chr28:10642561-10642265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):121, 78

               
               
               Conread position:5-265
               
               
               Cow position:chr28:34851061-34851331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):109, 48

               
               
               Conread position:6-268
               
               
               Cow position:chr28:24671732-24672012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):118, 101

               
               
               Conread position:6-270
               
               
               Cow position:chr28:746626-746911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 107

               
               
               Conread position:7-265
               
               
               Cow position:chr28:5825566-5825833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):178, 100

               
               
               Conread position:11-180
               
               
               Cow position:chr28:2862376-2862547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):113, 96

               
               
               Conread position:11-190
               
               
               Cow position:chr28:19565411-19565237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:15-211
               
               
               Cow position:chr28:7814571-7814764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:16-299
               
               
               Cow position:chr28:21104373-21104075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):17, 23

               
               
               Conread position:18-268
               
               
               Cow position:chr28:19194235-19194500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):106, 89

               
               
               Conread position:18-268
               
               
               Cow position:chr28:21767422-21767157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):106, 89

               
               
               Conread position:20-258
               
               
               Cow position:chr28:15375346-15375093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:194
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):110, 87

               
               
               Conread position:20-268
               
               
               Cow position:chr28:33466296-33466560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):104, 87

               
               
               Conread position:20-269
               
               
               Cow position:chr28:25563564-25563817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):13, 19

               
               
               Conread position:20-305
               
               
               Cow position:chr28:11710225-11709923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):104, 87

               
               
               Conread position:22-268
               
               
               Cow position:chr28:21598774-21598514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):100, 85

               
               
               Conread position:23-303
               
               
               Cow position:chr28:24686099-24686395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):106, 84

               
               
               Conread position:24-258
               
               
               Cow position:chr28:16109432-16109682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):100, 84

               
               
               Conread position:25-268
               
               
               Cow position:chr28:5212073-5212330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):99, 82

               
               
               Conread position:25-294
               
               
               Cow position:chr28:20312745-20313033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):80, 63

               
               
               Conread position:25-304
               
               
               Cow position:chr28:25424868-25424565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):82, 51

               
               
               Conread position:26-268
               
               
               Cow position:chr28:11931903-11931647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):10, 82

               
               
               Conread position:28-268
               
               
               Cow position:chr28:4283009-4282753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):8, 38

               
               
               Conread position:28-269
               
               
               Cow position:chr28:16925739-16925471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:35-268
               
               
               Cow position:chr28:22576945-22577194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):89, 72

               
               
               Conread position:38-284
               
               
               Cow position:chr28:3144393-3144132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):86, 68

               
               
               Conread position:41-187
               
               
               Cow position:chr28:1383721-1383573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):83, 67

               
               
               Conread position:41-188
               
               
               Cow position:chr28:25596160-25596307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):82, 48

               
               
               Conread position:41-268
               
               
               Cow position:chr28:1261756-1261999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):83, 66

               
               
               Conread position:41-303
               
               
               Cow position:chr28:27428214-27428497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):65, 246

               
               
               Conread position:42-265
               
               
               Cow position:chr28:25289020-25289245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):81, 72

               
               
               Conread position:42-268
               
               
               Cow position:chr28:7751791-7751562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):82, 191

               
               
               Conread position:43-269
               
               
               Cow position:chr28:28590230-28590468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):17, 59

               
               
               Conread position:44-284
               
               
               Cow position:chr28:7882303-7882559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):75, 63

               
               
               Conread position:49-188
               
               
               Cow position:chr28:11427031-11426891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):75, 57

               
               
               Conread position:49-211
               
               
               Cow position:chr28:7014205-7014035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):75, 9

               
               
               Conread position:49-258
               
               
               Cow position:chr28:16440904-16441119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):75, 58

               
               
               Conread position:49-268
               
               
               Cow position:chr28:30210194-30209961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):74, 47

               
               
               Conread position:50-265
               
               
               Cow position:chr28:1316284-1316054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):74, 8

               
               
               Conread position:52-270
               
               
               Cow position:chr28:23254280-23254049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):72, 56

               
               
               Conread position:52-281
               
               
               Cow position:chr28:2090105-2090349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):72, 18

               
               
               Conread position:53-268
               
               
               Cow position:chr28:19300803-19301035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):71, 54

               
               
               Conread position:53-268
               
               
               Cow position:chr28:25556455-25556224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):71, 54

               
               
               Conread position:55-268
               
               
               Cow position:chr28:6319398-6319169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):68, 52

               
               
               Conread position:61-269
               
               
               Cow position:chr28:13242536-13242320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):81, 7

               
               
               Conread position:62-265
               
               
               Cow position:chr28:3494107-3493890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):62, 45

               
               
               Conread position:67-265
               
               
               Cow position:chr28:18790537-18790747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):53, 40

               
               
               Conread position:67-268
               
               
               Cow position:chr28:34626571-34626773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:67-280
               
               
               Cow position:chr28:16388173-16388398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):57, 40

               
               
               Conread position:69-269
               
               
               Cow position:chr28:5371384-5371168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):55, 41

               
               
               Conread position:75-268
               
               
               Cow position:chr28:22208998-22208788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):8, 33

               
               
               Conread position:77-268
               
               
               Cow position:chr28:11585675-11585469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):47, 30

               
               
               Conread position:77-306
               
               
               Cow position:chr28:4139143-4138899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 47

               
               
               Conread position:78-265
               
               
               Cow position:chr28:4011987-4012170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):46, 29

               
               
               Conread position:78-269
               
               
               Cow position:chr28:11047109-11047316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):46, 29

               
               
               Conread position:1-120
               
               
               Cow position:chr29:23142792-23142911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):86, 107

               
               
               Conread position:1-162
               
               
               Cow position:chr29:10643733-10643570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):109, 35

               
               
               Conread position:1-171
               
               
               Cow position:chr29:24080371-24080544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:1-177
               
               
               Cow position:chr29:14619350-14619527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):123, 75

               
               
               Conread position:1-184
               
               
               Cow position:chr29:9800020-9800205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-184
               
               
               Cow position:chr29:26778339-26778525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):100, 80

               
               
               Conread position:1-185
               
               
               Cow position:chr29:40117004-40117189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):123, 80

               
               
               Conread position:1-186
               
               
               Cow position:chr29:19124565-19124752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-188
               
               
               Cow position:chr29:7290365-7290546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-188
               
               
               Cow position:chr29:10236977-10236788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):124, 106

               
               
               Conread position:1-188
               
               
               Cow position:chr29:18212549-18212355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):123, 179

               
               
               Conread position:1-188
               
               
               Cow position:chr29:18879217-18879030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):123, 34

               
               
               Conread position:1-188
               
               
               Cow position:chr29:30391844-30391657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):123, 95

               
               
               Conread position:1-189
               
               
               Cow position:chr29:8493534-8493353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):42, 35

               
               
               Conread position:1-244
               
               
               Cow position:chr29:15762349-15762614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):114, 60

               
               
               Conread position:1-244
               
               
               Cow position:chr29:40300518-40300259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:198
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-256
               
               
               Cow position:chr29:3501835-3502114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):33, 112

               
               
               Conread position:1-257
               
               
               Cow position:chr29:7811515-7811244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-258
               
               
               Cow position:chr29:984312-984586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-258
               
               
               Cow position:chr29:10297052-10296785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):32, 39

               
               
               Conread position:1-258
               
               
               Cow position:chr29:20429508-20429247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:204
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):123, 31

               
               
               Conread position:1-259
               
               
               Cow position:chr29:17117383-17117654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:1-259
               
               
               Cow position:chr29:45462913-45463186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:205
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-263
               
               
               Cow position:chr29:4326946-4327222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):122, 20

               
               
               Conread position:1-263
               
               
               Cow position:chr29:45006167-45005889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr29:961375-961647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:202
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):120, 88

               
               
               Conread position:1-264
               
               
               Cow position:chr29:2308728-2309008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:1-264
               
               
               Cow position:chr29:13017942-13017662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):33, 87

               
               
               Conread position:1-265
               
               
               Cow position:chr29:457597-457317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr29:527155-526875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr29:2188900-2188620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):79, 107

               
               
               Conread position:1-265
               
               
               Cow position:chr29:4201568-4201848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):82, 75

               
               
               Conread position:1-265
               
               
               Cow position:chr29:5187331-5187056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):123, 64

               
               
               Conread position:1-265
               
               
               Cow position:chr29:7799259-7799545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:1-265
               
               
               Cow position:chr29:8136804-8136517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:1-265
               
               
               Cow position:chr29:9079122-9078844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr29:22935737-22936010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):45, 37

               
               
               Conread position:1-265
               
               
               Cow position:chr29:24346010-24345735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):123, 22

               
               
               Conread position:1-265
               
               
               Cow position:chr29:31093880-31093600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr29:35434319-35434599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:210
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr29:41113397-41113116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):107, 45

               
               
               Conread position:1-266
               
               
               Cow position:chr29:9638856-9638582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):123, 40

               
               
               Conread position:1-267
               
               
               Cow position:chr29:2415354-2415080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):123, 51

               
               
               Conread position:1-267
               
               
               Cow position:chr29:13127656-13127379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr29:44044-43761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr29:406813-406532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):123, 56

               
               
               Conread position:1-268
               
               
               Cow position:chr29:528838-528558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):123, 56

               
               
               Conread position:1-268
               
               
               Cow position:chr29:606966-606683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr29:686742-686459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr29:2103523-2103806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr29:2694382-2694666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):67, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr29:2744821-2744540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):123, 99

               
               
               Conread position:1-268
               
               
               Cow position:chr29:2837609-2837326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr29:4480713-4480442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):190, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr29:4519424-4519699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):122, 36

               
               
               Conread position:1-268
               
               
               Cow position:chr29:4875456-4875171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr29:5238167-5238450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr29:5241077-5241360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr29:5426172-5425893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr29:5550452-5550732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):123, 36

               
               
               Conread position:1-268
               
               
               Cow position:chr29:6261865-6261588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:201
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr29:6455327-6455610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr29:6879253-6878967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:210
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):108, 177

               
               
               Conread position:1-268
               
               
               Cow position:chr29:6935165-6935447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr29:7427459-7427178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr29:8589055-8588772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr29:13107789-13108070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):187, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr29:13590261-13589979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):131, 113

               
               
               Conread position:1-268
               
               
               Cow position:chr29:14116494-14116774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr29:14568978-14569261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr29:15936813-15936531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr29:15944022-15944301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 35

               
               
               Conread position:1-268
               
               
               Cow position:chr29:15965872-15965589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr29:16097859-16097589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):112, 77

               
               
               Conread position:1-268
               
               
               Cow position:chr29:16185097-16184814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):128, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr29:16185989-16185703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):28, 109

               
               
               Conread position:1-268
               
               
               Cow position:chr29:16382304-16382586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-268
               
               
               Cow position:chr29:17408786-17409066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:216
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:1-268
               
               
               Cow position:chr29:17794861-17795152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr29:19514657-19514374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr29:19524459-19524176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr29:19619587-19619307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr29:19792817-19792535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr29:20213243-20213525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-268
               
               
               Cow position:chr29:20244739-20245018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):123, 112

               
               
               Conread position:1-268
               
               
               Cow position:chr29:21231400-21231117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr29:21443897-21443612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr29:23980409-23980692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr29:24728619-24728336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr29:25927105-25926822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):86, 75

               
               
               Conread position:1-268
               
               
               Cow position:chr29:27702759-27703040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr29:31765721-31766005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):123, 175

               
               
               Conread position:1-268
               
               
               Cow position:chr29:32292276-32292556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):129, 64

               
               
               Conread position:1-268
               
               
               Cow position:chr29:34746205-34745922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr29:35076812-35077095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr29:35735938-35735655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr29:38229682-38229965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr29:38349680-38349396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr29:39075754-39075471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr29:39214168-39213885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):125, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr29:40498198-40497915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr29:43327477-43327755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr29:43500018-43499735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):106, 147

               
               
               Conread position:1-268
               
               
               Cow position:chr29:43692408-43692689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):106, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr29:45208181-45208460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):123, 32

               
               
               Conread position:1-268
               
               
               Cow position:chr29:45583353-45583074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):112, 99

               
               
               Conread position:1-269
               
               
               Cow position:chr29:649713-650001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):123, 15

               
               
               Conread position:1-269
               
               
               Cow position:chr29:4120304-4120585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-269
               
               
               Cow position:chr29:6333002-6333280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):80, 74

               
               
               Conread position:1-269
               
               
               Cow position:chr29:6334241-6334519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):80, 74

               
               
               Conread position:1-269
               
               
               Cow position:chr29:20254845-20255129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):106, 174

               
               
               Conread position:1-269
               
               
               Cow position:chr29:20593413-20593697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:213
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr29:35264686-35264402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr29:35739050-35738771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):123, 40

               
               
               Conread position:1-270
               
               
               Cow position:chr29:2624064-2623780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):123, 60

               
               
               Conread position:1-270
               
               
               Cow position:chr29:4001867-4002152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):123, 97

               
               
               Conread position:1-270
               
               
               Cow position:chr29:6871592-6871301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-270
               
               
               Cow position:chr29:29056630-29056917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-273
               
               
               Cow position:chr29:34806154-34805865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):122, 175

               
               
               Conread position:1-277
               
               
               Cow position:chr29:19761721-19762017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):40, 76

               
               
               Conread position:1-282
               
               
               Cow position:chr29:16187137-16187430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-284
               
               
               Cow position:chr29:8623553-8623255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-284
               
               
               Cow position:chr29:10820033-10819734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-284
               
               
               Cow position:chr29:13101591-13101889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):112, 296

               
               
               Conread position:1-284
               
               
               Cow position:chr29:26161148-26160849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:220
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-285
               
               
               Cow position:chr29:1021717-1022018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):86, 110

               
               
               Conread position:1-285
               
               
               Cow position:chr29:19891244-19891543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-295
               
               
               Cow position:chr29:19338409-19338719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-298
               
               
               Cow position:chr29:18012060-18012359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):123, 44

               
               
               Conread position:1-301
               
               
               Cow position:chr29:3539811-3539491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):57, 22

               
               
               Conread position:1-303
               
               
               Cow position:chr29:13458446-13458759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 44

               
               
               Conread position:1-305
               
               
               Cow position:chr29:8667262-8667578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-306
               
               
               Cow position:chr29:11433385-11433715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):73, 276

               
               
               Conread position:1-306
               
               
               Cow position:chr29:13634882-13634555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):82, 44

               
               
               Conread position:2-268
               
               
               Cow position:chr29:87552-87285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):87, 31

               
               
               Conread position:2-268
               
               
               Cow position:chr29:40096415-40096697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):121, 108

               
               
               Conread position:2-303
               
               
               Cow position:chr29:14050759-14050446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:228
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):121, 45

               
               
               Conread position:3-262
               
               
               Cow position:chr29:9137746-9138029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):36, 97

               
               
               Conread position:3-268
               
               
               Cow position:chr29:10154718-10154996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):121, 93

               
               
               Conread position:3-269
               
               
               Cow position:chr29:9332596-9332877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):126, 103

               
               
               Conread position:4-268
               
               
               Cow position:chr29:13639897-13639621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):119, 11

               
               
               Conread position:5-264
               
               
               Cow position:chr29:10156833-10156561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):79, 71

               
               
               Conread position:6-281
               
               
               Cow position:chr29:11684455-11684752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):130, 101

               
               
               Conread position:7-188
               
               
               Cow position:chr29:29556445-29556271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):116, 58

               
               
               Conread position:7-269
               
               
               Cow position:chr29:5977650-5977388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 70

               
               
               Conread position:9-265
               
               
               Cow position:chr29:35291565-35291828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):189, 21

               
               
               Conread position:9-276
               
               
               Cow position:chr29:36242792-36243083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):9, 21

               
               
               Conread position:10-186
               
               
               Cow position:chr29:3549220-3549402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:11-268
               
               
               Cow position:chr29:38247293-38247013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):19, 31

               
               
               Conread position:11-268
               
               
               Cow position:chr29:39567146-39567418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):38, 159

               
               
               Conread position:11-306
               
               
               Cow position:chr29:24659641-24659328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:16-163
               
               
               Cow position:chr29:18720534-18720384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:16-270
               
               
               Cow position:chr29:5948331-5948053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):20, 43

               
               
               Conread position:19-301
               
               
               Cow position:chr29:23348754-23348463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:209
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):14, 21

               
               
               Conread position:20-188
               
               
               Cow position:chr29:31594593-31594431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):69, 33

               
               
               Conread position:21-268
               
               
               Cow position:chr29:15401286-15401024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):103, 26

               
               
               Conread position:25-268
               
               
               Cow position:chr29:1324911-1325173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):11, 72

               
               
               Conread position:25-300
               
               
               Cow position:chr29:29771013-29770723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):11, 29

               
               
               Conread position:27-188
               
               
               Cow position:chr29:21933658-21933495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):98, 80

               
               
               Conread position:28-246
               
               
               Cow position:chr29:26130270-26130503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):96, 79

               
               
               Conread position:28-265
               
               
               Cow position:chr29:44902226-44901973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):96, 80

               
               
               Conread position:28-268
               
               
               Cow position:chr29:31786163-31786410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):115, 81

               
               
               Conread position:29-268
               
               
               Cow position:chr29:2463225-2462977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):159, 78

               
               
               Conread position:30-186
               
               
               Cow position:chr29:478600-478759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 78

               
               
               Conread position:35-268
               
               
               Cow position:chr29:15576574-15576326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):76, 26

               
               
               Conread position:37-269
               
               
               Cow position:chr29:32290088-32290335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):87, 70

               
               
               Conread position:38-260
               
               
               Cow position:chr29:18749096-18748857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:38-305
               
               
               Cow position:chr29:12901615-12901336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):66, 260

               
               
               Conread position:41-268
               
               
               Cow position:chr29:32808089-32808329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):83, 73

               
               
               Conread position:41-284
               
               
               Cow position:chr29:21665464-21665721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):82, 66

               
               
               Conread position:42-303
               
               
               Cow position:chr29:477554-477831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):82, 66

               
               
               Conread position:43-268
               
               
               Cow position:chr29:28696670-28696436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):79, 64

               
               
               Conread position:48-268
               
               
               Cow position:chr29:16501380-16501617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:49-269
               
               
               Cow position:chr29:32800204-32799974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):74, 14

               
               
               Conread position:51-263
               
               
               Cow position:chr29:44233439-44233222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):146, 39

               
               
               Conread position:53-268
               
               
               Cow position:chr29:6775484-6775258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):72, 54

               
               
               Conread position:53-268
               
               
               Cow position:chr29:34551953-34552184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):71, 61

               
               
               Conread position:57-268
               
               
               Cow position:chr29:38910504-38910272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:62-268
               
               
               Cow position:chr29:24013244-24013466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):68, 45

               
               
               Conread position:1-180
               
               
               Cow position:chr3:15153245-15153427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):42, 107

               
               
               Conread position:1-181
               
               
               Cow position:chr3:24454958-24454785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1-181
               
               
               Cow position:chr3:76136917-76137104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:1-183
               
               
               Cow position:chr3:68302737-68302923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:1-184
               
               
               Cow position:chr3:69945548-69945366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):121, 173

               
               
               Conread position:1-185
               
               
               Cow position:chr3:11026221-11026405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-186
               
               
               Cow position:chr3:11019041-11019228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-186
               
               
               Cow position:chr3:49462975-49462788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-186
               
               
               Cow position:chr3:54608417-54608230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-186
               
               
               Cow position:chr3:67544794-67544612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):114, 120

               
               
               Conread position:1-188
               
               
               Cow position:chr3:17461585-17461768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):123, 55

               
               
               Conread position:1-188
               
               
               Cow position:chr3:18606508-18606696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:154
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-188
               
               
               Cow position:chr3:22234896-22234710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):124, 106

               
               
               Conread position:1-188
               
               
               Cow position:chr3:41053020-41053209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:1-188
               
               
               Cow position:chr3:50768101-50768291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):38, 107

               
               
               Conread position:1-188
               
               
               Cow position:chr3:61856501-61856690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-188
               
               
               Cow position:chr3:73763041-73762852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-196
               
               
               Cow position:chr3:51234909-51234711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):83, 75

               
               
               Conread position:1-197
               
               
               Cow position:chr3:10346558-10346752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):123, 14

               
               
               Conread position:1-197
               
               
               Cow position:chr3:52256924-52256738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1-211
               
               
               Cow position:chr3:7476304-7476085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-211
               
               
               Cow position:chr3:19753140-19752921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-211
               
               
               Cow position:chr3:60892059-60892277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-211
               
               
               Cow position:chr3:70894170-70894383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):182, 106

               
               
               Conread position:1-214
               
               
               Cow position:chr3:3837012-3836791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):123, 90

               
               
               Conread position:1-242
               
               
               Cow position:chr3:58971330-58971584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):158, 106

               
               
               Conread position:1-247
               
               
               Cow position:chr3:49674224-49674486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1-248
               
               
               Cow position:chr3:2524871-2525134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-250
               
               
               Cow position:chr3:42846939-42847204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-254
               
               
               Cow position:chr3:2431436-2431158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):75, 115

               
               
               Conread position:1-255
               
               
               Cow position:chr3:48567234-48566968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):122, 49

               
               
               Conread position:1-256
               
               
               Cow position:chr3:38863271-38863541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):123, 161

               
               
               Conread position:1-257
               
               
               Cow position:chr3:23010947-23011219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-258
               
               
               Cow position:chr3:364780-364509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):123, 41

               
               
               Conread position:1-258
               
               
               Cow position:chr3:2537685-2537957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):118, 71

               
               
               Conread position:1-258
               
               
               Cow position:chr3:17709766-17710040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):83, 107

               
               
               Conread position:1-258
               
               
               Cow position:chr3:61278342-61278615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):118, 106

               
               
               Conread position:1-258
               
               
               Cow position:chr3:68155907-68156181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:202
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-259
               
               
               Cow position:chr3:34026975-34026697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):75, 111

               
               
               Conread position:1-260
               
               
               Cow position:chr3:35919155-35919430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):47, 32

               
               
               Conread position:1-260
               
               
               Cow position:chr3:55272605-55272338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-260
               
               
               Cow position:chr3:56336085-56335811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):82, 62

               
               
               Conread position:1-261
               
               
               Cow position:chr3:2851642-2851387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):197, 106

               
               
               Conread position:1-261
               
               
               Cow position:chr3:11254719-11254449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 106

               
               
               Conread position:1-262
               
               
               Cow position:chr3:42371618-42371341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-263
               
               
               Cow position:chr3:41057555-41057834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-263
               
               
               Cow position:chr3:78261118-78260840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr3:2922226-2922504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):119, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr3:5988967-5988688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr3:29282349-29282628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr3:43528806-43528531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):123, 24

               
               
               Conread position:1-265
               
               
               Cow position:chr3:226297-226020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):67, 77

               
               
               Conread position:1-265
               
               
               Cow position:chr3:1034683-1034963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr3:6264933-6265214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:211
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr3:6442662-6442942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-265
               
               
               Cow position:chr3:13248425-13248145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr3:16291144-16290859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):66, 110

               
               
               Conread position:1-265
               
               
               Cow position:chr3:18460092-18459813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):123, 26

               
               
               Conread position:1-265
               
               
               Cow position:chr3:25691159-25691437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):123, 46

               
               
               Conread position:1-265
               
               
               Cow position:chr3:26920323-26920602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-265
               
               
               Cow position:chr3:31078769-31078488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):64, 107

               
               
               Conread position:1-265
               
               
               Cow position:chr3:31419122-31419403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-265
               
               
               Cow position:chr3:34556794-34556514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr3:43189670-43189391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 35

               
               
               Conread position:1-265
               
               
               Cow position:chr3:47078017-47077737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr3:51032772-51033052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:210
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr3:56206136-56206408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):108, 188

               
               
               Conread position:1-265
               
               
               Cow position:chr3:61172059-61171795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):137, 27

               
               
               Conread position:1-265
               
               
               Cow position:chr3:63688329-63688055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):123, 34

               
               
               Conread position:1-265
               
               
               Cow position:chr3:66610413-66610131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):94, 107

               
               
               Conread position:1-265
               
               
               Cow position:chr3:69419490-69419209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr3:72603772-72604057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):122, 107

               
               
               Conread position:1-265
               
               
               Cow position:chr3:74391314-74391033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):25, 20

               
               
               Conread position:1-265
               
               
               Cow position:chr3:77496242-77496524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):28, 42

               
               
               Conread position:1-265
               
               
               Cow position:chr3:79094638-79094359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):123, 108

               
               
               Conread position:1-265
               
               
               Cow position:chr3:83202064-83201786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):17, 56

               
               
               Conread position:1-266
               
               
               Cow position:chr3:6078908-6078627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):123, 95

               
               
               Conread position:1-266
               
               
               Cow position:chr3:20093308-20093029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):32, 39

               
               
               Conread position:1-268
               
               
               Cow position:chr3:524556-524838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:579768-580058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):32, 113

               
               
               Conread position:1-268
               
               
               Cow position:chr3:2035729-2036008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):129, 13

               
               
               Conread position:1-268
               
               
               Cow position:chr3:2674464-2674739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):123, 87

               
               
               Conread position:1-268
               
               
               Cow position:chr3:2707279-2707015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):82, 75

               
               
               Conread position:1-268
               
               
               Cow position:chr3:2903870-2903588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:215
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):9, 39

               
               
               Conread position:1-268
               
               
               Cow position:chr3:3031826-3032108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):53, 275

               
               
               Conread position:1-268
               
               
               Cow position:chr3:3372591-3372307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):123, 175

               
               
               Conread position:1-268
               
               
               Cow position:chr3:3552983-3553258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:3884600-3884316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):28, 76

               
               
               Conread position:1-268
               
               
               Cow position:chr3:3953920-3954205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):28, 126

               
               
               Conread position:1-268
               
               
               Cow position:chr3:4135384-4135108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:203
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:6754281-6754563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):123, 52

               
               
               Conread position:1-268
               
               
               Cow position:chr3:6838628-6838910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:7857776-7858062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr3:8240355-8240638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:8557351-8557071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):123, 45

               
               
               Conread position:1-268
               
               
               Cow position:chr3:8923188-8923473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):90, 109

               
               
               Conread position:1-268
               
               
               Cow position:chr3:10244255-10244538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr3:11410679-11410393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):110, 263

               
               
               Conread position:1-268
               
               
               Cow position:chr3:11418142-11418425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:11784946-11785229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:13361042-13361325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:14280271-14280554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:14438393-14438111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:14466276-14465994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):118, 105

               
               
               Conread position:1-268
               
               
               Cow position:chr3:14626725-14626440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):122, 32

               
               
               Conread position:1-268
               
               
               Cow position:chr3:14717235-14717524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:15387632-15387915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:15685473-15685200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):44, 69

               
               
               Conread position:1-268
               
               
               Cow position:chr3:15688093-15687811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):126, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:15954649-15954367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:16226470-16226751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:16620158-16619875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):123, 64

               
               
               Conread position:1-268
               
               
               Cow position:chr3:17865024-17865305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:18184502-18184778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:1-268
               
               
               Cow position:chr3:18670616-18670901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:18815089-18815367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):110, 156

               
               
               Conread position:1-268
               
               
               Cow position:chr3:18887005-18887289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr3:18907456-18907739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:19691899-19691616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:19711888-19711605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:19797508-19797224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):123, 175

               
               
               Conread position:1-268
               
               
               Cow position:chr3:19959190-19959473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:215
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:20225583-20225866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:20795889-20796171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):123, 15

               
               
               Conread position:1-268
               
               
               Cow position:chr3:20843974-20843691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:20998253-20997970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr3:21178661-21178378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:22490218-22490500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:209
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:22919116-22919399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):123, 26

               
               
               Conread position:1-268
               
               
               Cow position:chr3:23169641-23169360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):123, 14

               
               
               Conread position:1-268
               
               
               Cow position:chr3:23216738-23216453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:24432972-24433255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:24442511-24442228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:214
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:24572476-24572192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:24887178-24887461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:26722224-26721936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:26801680-26801963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:27544913-27544625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):122, 276

               
               
               Conread position:1-268
               
               
               Cow position:chr3:28635299-28635019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr3:29328338-29328055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:29573486-29573203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:30351879-30352160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:30567709-30567993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:215
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):50, 77

               
               
               Conread position:1-268
               
               
               Cow position:chr3:32619417-32619133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:33268899-33268614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr3:34016166-34016452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):107, 177

               
               
               Conread position:1-268
               
               
               Cow position:chr3:34819793-34819510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:35043755-35044038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-268
               
               
               Cow position:chr3:35612742-35613021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):123, 28

               
               
               Conread position:1-268
               
               
               Cow position:chr3:36121771-36122053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):123, 82

               
               
               Conread position:1-268
               
               
               Cow position:chr3:36861511-36861232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:36874466-36874183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):110, 174

               
               
               Conread position:1-268
               
               
               Cow position:chr3:37020628-37020366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:38747976-38748259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:38870161-38870444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:40049484-40049764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):129, 49

               
               
               Conread position:1-268
               
               
               Cow position:chr3:40194466-40194749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:40284753-40284470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:40568597-40568315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):75, 88

               
               
               Conread position:1-268
               
               
               Cow position:chr3:43085051-43085316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:198
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:43525144-43524861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:44927409-44927692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:45097835-45098118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:45215207-45214926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:45700263-45700544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:209
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):116, 35

               
               
               Conread position:1-268
               
               
               Cow position:chr3:45978095-45978378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:46506364-46506650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):34, 109

               
               
               Conread position:1-268
               
               
               Cow position:chr3:46856789-46856502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):34, 95

               
               
               Conread position:1-268
               
               
               Cow position:chr3:48252326-48252607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr3:48530067-48530348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):126, 105

               
               
               Conread position:1-268
               
               
               Cow position:chr3:49134112-49133829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:49416255-49415973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):123, 9

               
               
               Conread position:1-268
               
               
               Cow position:chr3:49610620-49610337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:49907439-49907156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:50959809-50960092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:53223229-53222938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):75, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:53384856-53384573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):119, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:53407824-53407543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):123, 92

               
               
               Conread position:1-268
               
               
               Cow position:chr3:54653564-54653281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):112, 174

               
               
               Conread position:1-268
               
               
               Cow position:chr3:54766549-54766833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:54808586-54808869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):129, 113

               
               
               Conread position:1-268
               
               
               Cow position:chr3:54877236-54877519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:56297980-56298257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:56328784-56329067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:58336902-58337178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:59118183-59117895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:208
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):124, 92

               
               
               Conread position:1-268
               
               
               Cow position:chr3:60054406-60054685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-268
               
               
               Cow position:chr3:61191489-61191207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):121, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr3:64216166-64216449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):33, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr3:64376123-64375841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):122, 46

               
               
               Conread position:1-268
               
               
               Cow position:chr3:65989502-65989784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 72

               
               
               Conread position:1-268
               
               
               Cow position:chr3:68870159-68869876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):124, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:72668756-72668473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:73211424-73211694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-268
               
               
               Cow position:chr3:73459651-73459933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:75038246-75037963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:75771539-75771256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:75997301-75997008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr3:76000365-76000080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):107, 18

               
               
               Conread position:1-268
               
               
               Cow position:chr3:77004917-77005189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):189, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr3:77472405-77472122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:78023852-78023569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:78110540-78110823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):92, 174

               
               
               Conread position:1-268
               
               
               Cow position:chr3:78472395-78472112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:81374656-81374373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr3:83437675-83437392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr3:597716-598000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):110, 170

               
               
               Conread position:1-269
               
               
               Cow position:chr3:2507050-2506768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):123, 10

               
               
               Conread position:1-269
               
               
               Cow position:chr3:11385102-11385384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:212
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr3:13084946-13084660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):107, 257

               
               
               Conread position:1-269
               
               
               Cow position:chr3:14261027-14261312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr3:14724724-14725008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:1-269
               
               
               Cow position:chr3:20389987-20389698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr3:23204083-23203793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):33, 112

               
               
               Conread position:1-269
               
               
               Cow position:chr3:30179510-30179795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:210
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr3:38096496-38096780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr3:40344819-40345111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):34, 27

               
               
               Conread position:1-269
               
               
               Cow position:chr3:40827281-40827565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):113, 174

               
               
               Conread position:1-269
               
               
               Cow position:chr3:46683429-46683713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr3:47272283-47272001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):113, 173

               
               
               Conread position:1-269
               
               
               Cow position:chr3:48600128-48600397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):14, 109

               
               
               Conread position:1-269
               
               
               Cow position:chr3:55085762-55085479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr3:55110415-55110132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-269
               
               
               Cow position:chr3:56644735-56644451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-269
               
               
               Cow position:chr3:56976559-56976276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):123, 99

               
               
               Conread position:1-269
               
               
               Cow position:chr3:58034073-58033794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):189, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr3:59603396-59603678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):145, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr3:59648686-59648974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:1-269
               
               
               Cow position:chr3:59865075-59865359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr3:65391448-65391731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1-269
               
               
               Cow position:chr3:66623781-66624066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:1-269
               
               
               Cow position:chr3:66829355-66829071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr3:72390514-72390794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):122, 63

               
               
               Conread position:1-269
               
               
               Cow position:chr3:78546673-78546388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr3:79208557-79208280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):123, 40

               
               
               Conread position:1-270
               
               
               Cow position:chr3:29360737-29360451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:215
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):49, 40

               
               
               Conread position:1-270
               
               
               Cow position:chr3:49649809-49650092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:214
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):123, 87

               
               
               Conread position:1-270
               
               
               Cow position:chr3:59691339-59691616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):189, 105

               
               
               Conread position:1-270
               
               
               Cow position:chr3:69751274-69750989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):35, 57

               
               
               Conread position:1-270
               
               
               Cow position:chr3:75157763-75157483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):123, 67

               
               
               Conread position:1-272
               
               
               Cow position:chr3:17899245-17899536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-272
               
               
               Cow position:chr3:26219633-26219347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:215
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-274
               
               
               Cow position:chr3:31224881-31225163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:215
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):29, 107

               
               
               Conread position:1-274
               
               
               Cow position:chr3:45668456-45668172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):121, 27

               
               
               Conread position:1-276
               
               
               Cow position:chr3:31120232-31119943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):82, 75

               
               
               Conread position:1-277
               
               
               Cow position:chr3:3061844-3062136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 35

               
               
               Conread position:1-277
               
               
               Cow position:chr3:25690222-25690511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-277
               
               
               Cow position:chr3:45184406-45184122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):185, 106

               
               
               Conread position:1-278
               
               
               Cow position:chr3:51597507-51597805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-281
               
               
               Cow position:chr3:18352766-18352467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):123, 52

               
               
               Conread position:1-282
               
               
               Cow position:chr3:11333883-11333589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-282
               
               
               Cow position:chr3:11447432-11447726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-282
               
               
               Cow position:chr3:77187877-77188175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:225
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-284
               
               
               Cow position:chr3:7566987-7566690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:219
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-284
               
               
               Cow position:chr3:13513307-13513008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:220
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):124, 106

               
               
               Conread position:1-284
               
               
               Cow position:chr3:16157112-16157410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-284
               
               
               Cow position:chr3:20379124-20378831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-284
               
               
               Cow position:chr3:21100399-21100697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):110, 27

               
               
               Conread position:1-284
               
               
               Cow position:chr3:60093149-60092854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):61, 107

               
               
               Conread position:1-284
               
               
               Cow position:chr3:72530605-72530908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):120, 107

               
               
               Conread position:1-288
               
               
               Cow position:chr3:66968283-66967981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-288
               
               
               Cow position:chr3:76188119-76188422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):128, 27

               
               
               Conread position:1-291
               
               
               Cow position:chr3:58350005-58350310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):123, 108

               
               
               Conread position:1-295
               
               
               Cow position:chr3:2024599-2024902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):122, 36

               
               
               Conread position:1-297
               
               
               Cow position:chr3:24585632-24585317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):128, 91

               
               
               Conread position:1-299
               
               
               Cow position:chr3:73467016-73467327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):123, 14

               
               
               Conread position:1-300
               
               
               Cow position:chr3:4031343-4031660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-301
               
               
               Cow position:chr3:67624851-67624539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:230
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):123, 62

               
               
               Conread position:1-302
               
               
               Cow position:chr3:43424725-43425043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):122, 258

               
               
               Conread position:1-303
               
               
               Cow position:chr3:3984721-3985026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):182, 35

               
               
               Conread position:1-303
               
               
               Cow position:chr3:58129897-58130207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:1-303
               
               
               Cow position:chr3:64281519-64281222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):123, 82

               
               
               Conread position:1-303
               
               
               Cow position:chr3:73956423-73956740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:229
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):123, 75

               
               
               Conread position:1-305
               
               
               Cow position:chr3:495856-495536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):112, 299

               
               
               Conread position:1-306
               
               
               Cow position:chr3:15191776-15192099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:1-306
               
               
               Cow position:chr3:34392689-34392378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-306
               
               
               Cow position:chr3:52418362-52418688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:2-265
               
               
               Cow position:chr3:24853145-24852880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:194
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):122, 8

               
               
               Conread position:2-265
               
               
               Cow position:chr3:28675416-28675696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 97

               
               
               Conread position:2-268
               
               
               Cow position:chr3:13311401-13311122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):122, 31

               
               
               Conread position:2-268
               
               
               Cow position:chr3:25011728-25012010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-269
               
               
               Cow position:chr3:33254295-33254015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):112, 31

               
               
               Conread position:2-297
               
               
               Cow position:chr3:14864477-14864780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):159, 26

               
               
               Conread position:2-302
               
               
               Cow position:chr3:16890144-16890457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 42

               
               
               Conread position:3-264
               
               
               Cow position:chr3:60932862-60933138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:208
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):121, 38

               
               
               Conread position:3-265
               
               
               Cow position:chr3:30908522-30908241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):121, 19

               
               
               Conread position:3-268
               
               
               Cow position:chr3:1831142-1830855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):99, 35

               
               
               Conread position:3-279
               
               
               Cow position:chr3:2334717-2335002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):121, 47

               
               
               Conread position:4-266
               
               
               Cow position:chr3:76923710-76923435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):119, 32

               
               
               Conread position:4-268
               
               
               Cow position:chr3:79592457-79592179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):120, 92

               
               
               Conread position:5-268
               
               
               Cow position:chr3:65085533-65085812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):119, 102

               
               
               Conread position:6-277
               
               
               Cow position:chr3:54959632-54959914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):118, 63

               
               
               Conread position:7-155
               
               
               Cow position:chr3:80277028-80276878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):115, 23

               
               
               Conread position:7-274
               
               
               Cow position:chr3:29887986-29887708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):29, 94

               
               
               Conread position:8-268
               
               
               Cow position:chr3:2364657-2364381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):116, 102

               
               
               Conread position:9-277
               
               
               Cow position:chr3:6689431-6689714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):114, 98

               
               
               Conread position:9-277
               
               
               Cow position:chr3:16333020-16333300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):71, 99

               
               
               Conread position:10-188
               
               
               Cow position:chr3:70321516-70321337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):114, 18

               
               
               Conread position:10-269
               
               
               Cow position:chr3:48269296-48269574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):114, 97

               
               
               Conread position:10-282
               
               
               Cow position:chr3:42670760-42671050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):114, 100

               
               
               Conread position:12-268
               
               
               Cow position:chr3:68583846-68583583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:204
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):112, 58

               
               
               Conread position:12-268
               
               
               Cow position:chr3:81064031-81064303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):112, 95

               
               
               Conread position:14-269
               
               
               Cow position:chr3:71230846-71231117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:202
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):109, 96

               
               
               Conread position:15-265
               
               
               Cow position:chr3:58951068-58951328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):174, 58

               
               
               Conread position:15-268
               
               
               Cow position:chr3:13326723-13326454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):18, 24

               
               
               Conread position:16-262
               
               
               Cow position:chr3:39172069-39171800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):107, 91

               
               
               Conread position:16-263
               
               
               Cow position:chr3:42754224-42754473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):142, 92

               
               
               Conread position:16-268
               
               
               Cow position:chr3:2007713-2007984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):52, 92

               
               
               Conread position:16-268
               
               
               Cow position:chr3:32326339-32326071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):108, 98

               
               
               Conread position:16-291
               
               
               Cow position:chr3:37948864-37948569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):107, 82

               
               
               Conread position:16-297
               
               
               Cow position:chr3:72018284-72018587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):31, 12

               
               
               Conread position:16-303
               
               
               Cow position:chr3:47691570-47691872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):108, 82

               
               
               Conread position:17-270
               
               
               Cow position:chr3:42489876-42489604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):23, 82

               
               
               Conread position:18-186
               
               
               Cow position:chr3:4634766-4634936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):109, 136

               
               
               Conread position:18-192
               
               
               Cow position:chr3:57481145-57480969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):106, 89

               
               
               Conread position:18-268
               
               
               Cow position:chr3:80082373-80082107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):105, 89

               
               
               Conread position:19-268
               
               
               Cow position:chr3:67196715-67196450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):105, 88

               
               
               Conread position:20-211
               
               
               Cow position:chr3:47630123-47629924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):104, 87

               
               
               Conread position:20-265
               
               
               Cow position:chr3:62321695-62321428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):168, 86

               
               
               Conread position:20-269
               
               
               Cow position:chr3:7114927-7115196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):104, 88

               
               
               Conread position:20-305
               
               
               Cow position:chr3:83928337-83928640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):104, 156

               
               
               Conread position:21-258
               
               
               Cow position:chr3:3165045-3164793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):102, 87

               
               
               Conread position:21-272
               
               
               Cow position:chr3:40005483-40005751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):103, 86

               
               
               Conread position:22-264
               
               
               Cow position:chr3:9640996-9641250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):102, 85

               
               
               Conread position:23-268
               
               
               Cow position:chr3:55836465-55836205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):99, 84

               
               
               Conread position:24-268
               
               
               Cow position:chr3:2901676-2901418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):69, 139

               
               
               Conread position:24-285
               
               
               Cow position:chr3:45647107-45647383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):100, 17

               
               
               Conread position:25-188
               
               
               Cow position:chr3:12323285-12323450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):105, 89

               
               
               Conread position:25-264
               
               
               Cow position:chr3:68042994-68042739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):99, 82

               
               
               Conread position:25-268
               
               
               Cow position:chr3:589020-589279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):99, 82

               
               
               Conread position:28-256
               
               
               Cow position:chr3:58383416-58383660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):96, 79

               
               
               Conread position:28-268
               
               
               Cow position:chr3:77696877-77696626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):8, 80

               
               
               Conread position:28-303
               
               
               Cow position:chr3:14602292-14602001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:215
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):99, 79

               
               
               Conread position:31-192
               
               
               Cow position:chr3:57022040-57022197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:32-268
               
               
               Cow position:chr3:49218852-49218597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):8, 77

               
               
               Conread position:32-270
               
               
               Cow position:chr3:20780422-20780166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):92, 76

               
               
               Conread position:35-268
               
               
               Cow position:chr3:52486746-52486992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):156, 61

               
               
               Conread position:38-171
               
               
               Cow position:chr3:80202319-80202183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:38-265
               
               
               Cow position:chr3:74879194-74878955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):92, 69

               
               
               Conread position:40-269
               
               
               Cow position:chr3:18393922-18393673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:40-306
               
               
               Cow position:chr3:26894137-26894420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):84, 68

               
               
               Conread position:41-265
               
               
               Cow position:chr3:21070777-21070535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):42, 35

               
               
               Conread position:41-268
               
               
               Cow position:chr3:45026311-45026068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):83, 66

               
               
               Conread position:41-268
               
               
               Cow position:chr3:67929807-67929556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:41-268
               
               
               Cow position:chr3:84419316-84419072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):82, 66

               
               
               Conread position:41-270
               
               
               Cow position:chr3:75106918-75107155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):83, 36

               
               
               Conread position:41-277
               
               
               Cow position:chr3:5950959-5950707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:42-268
               
               
               Cow position:chr3:7280294-7280536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):51, 130

               
               
               Conread position:43-262
               
               
               Cow position:chr3:61262290-61262525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):79, 64

               
               
               Conread position:43-265
               
               
               Cow position:chr3:48811517-48811278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:43-268
               
               
               Cow position:chr3:81101974-81102210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):81, 43

               
               
               Conread position:45-269
               
               
               Cow position:chr3:50762593-50762830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):78, 24

               
               
               Conread position:48-268
               
               
               Cow position:chr3:51666359-51666595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):76, 58

               
               
               Conread position:49-265
               
               
               Cow position:chr3:73001386-73001612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):75, 58

               
               
               Conread position:52-265
               
               
               Cow position:chr3:2680018-2680246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):72, 55

               
               
               Conread position:52-268
               
               
               Cow position:chr3:82617862-82618101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:52-269
               
               
               Cow position:chr3:62624156-62623922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):39, 57

               
               
               Conread position:52-284
               
               
               Cow position:chr3:73930921-73930675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):72, 55

               
               
               Conread position:53-258
               
               
               Cow position:chr3:34270414-34270634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):74, 54

               
               
               Conread position:53-306
               
               
               Cow position:chr3:54862963-54862701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):79, 24

               
               
               Conread position:55-258
               
               
               Cow position:chr3:50124019-50123803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):69, 18

               
               
               Conread position:57-256
               
               
               Cow position:chr3:14456419-14456205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):67, 50

               
               
               Conread position:57-268
               
               
               Cow position:chr3:35299155-35299384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):18, 53

               
               
               Conread position:58-264
               
               
               Cow position:chr3:20562228-20562003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):15, 120

               
               
               Conread position:58-268
               
               
               Cow position:chr3:69127302-69127082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):66, 49

               
               
               Conread position:60-268
               
               
               Cow position:chr3:38698026-38698251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):35, 48

               
               
               Conread position:61-265
               
               
               Cow position:chr3:79901990-79902210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):63, 46

               
               
               Conread position:61-268
               
               
               Cow position:chr3:72776724-72776950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):63, 46

               
               
               Conread position:62-257
               
               
               Cow position:chr3:10958721-10958526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):62, 45

               
               
               Conread position:62-265
               
               
               Cow position:chr3:59208235-59208453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):62, 34

               
               
               Conread position:63-268
               
               
               Cow position:chr3:17331257-17331478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):61, 44

               
               
               Conread position:67-268
               
               
               Cow position:chr3:4319496-4319287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):57, 40

               
               
               Conread position:77-268
               
               
               Cow position:chr3:58061101-58060907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):47, 30

               
               
               Conread position:77-269
               
               
               Cow position:chr3:30384751-30384958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):47, 72

               
               
               Conread position:78-265
               
               
               Cow position:chr3:76173158-76172955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):45, 29

               
               
               Conread position:81-268
               
               
               Cow position:chr3:23876153-23876356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 26

               
               
               Conread position:100-303
               
               
               Cow position:chr3:51609293-51609514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:129-303
               
               
               Cow position:chr3:78895046-78894859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):62, 156

               
               
               Conread position:1-165
               
               
               Cow position:chr4:19265061-19265224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):121, 52

               
               
               Conread position:1-171
               
               
               Cow position:chr4:22014023-22013853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):121, 97

               
               
               Conread position:1-171
               
               
               Cow position:chr4:52980607-52980779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):122, 40

               
               
               Conread position:1-184
               
               
               Cow position:chr4:19237467-19237648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):124, 46

               
               
               Conread position:1-184
               
               
               Cow position:chr4:22366573-22366758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:152
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-186
               
               
               Cow position:chr4:1027825-1027638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):123, 84

               
               
               Conread position:1-186
               
               
               Cow position:chr4:67435532-67435722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):57, 27

               
               
               Conread position:1-188
               
               
               Cow position:chr4:3268864-3268675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-188
               
               
               Cow position:chr4:18845191-18845380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-188
               
               
               Cow position:chr4:19744377-19744566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 97

               
               
               Conread position:1-188
               
               
               Cow position:chr4:30170954-30170765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-188
               
               
               Cow position:chr4:30690190-30690370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):123, 57

               
               
               Conread position:1-188
               
               
               Cow position:chr4:31348769-31348580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):33, 76

               
               
               Conread position:1-188
               
               
               Cow position:chr4:52632986-52632796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):37, 107

               
               
               Conread position:1-189
               
               
               Cow position:chr4:19957428-19957618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-189
               
               
               Cow position:chr4:45499555-45499736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:1-196
               
               
               Cow position:chr4:2140902-2141094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:1-196
               
               
               Cow position:chr4:67600278-67600082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):123, 108

               
               
               Conread position:1-211
               
               
               Cow position:chr4:19006908-19007132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):48, 112

               
               
               Conread position:1-211
               
               
               Cow position:chr4:35260986-35260769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):123, 48

               
               
               Conread position:1-211
               
               
               Cow position:chr4:53545485-53545704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-211
               
               
               Cow position:chr4:67652035-67651817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-248
               
               
               Cow position:chr4:11309046-11309309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-249
               
               
               Cow position:chr4:12018005-12018268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):122, 42

               
               
               Conread position:1-249
               
               
               Cow position:chr4:63096675-63096939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):100, 54

               
               
               Conread position:1-256
               
               
               Cow position:chr4:10885038-10885307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):129, 92

               
               
               Conread position:1-257
               
               
               Cow position:chr4:33366782-33366514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):122, 32

               
               
               Conread position:1-257
               
               
               Cow position:chr4:43898495-43898225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:207
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):123, 14

               
               
               Conread position:1-258
               
               
               Cow position:chr4:2680825-2681084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:188
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-258
               
               
               Cow position:chr4:13327510-13327238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):123, 52

               
               
               Conread position:1-258
               
               
               Cow position:chr4:19255765-19256040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:1-259
               
               
               Cow position:chr4:31561837-31561578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):108, 64

               
               
               Conread position:1-260
               
               
               Cow position:chr4:3070272-3070539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):187, 106

               
               
               Conread position:1-260
               
               
               Cow position:chr4:10044368-10044093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-260
               
               
               Cow position:chr4:44734017-44734293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:201
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-261
               
               
               Cow position:chr4:1646174-1646443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):56, 68

               
               
               Conread position:1-261
               
               
               Cow position:chr4:31136197-31136472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-261
               
               
               Cow position:chr4:34172126-34171850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:208
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-262
               
               
               Cow position:chr4:6653190-6653460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-262
               
               
               Cow position:chr4:62000008-61999732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:204
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-263
               
               
               Cow position:chr4:8760691-8760968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):124, 106

               
               
               Conread position:1-263
               
               
               Cow position:chr4:27540064-27540342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr4:20298676-20298957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr4:22073859-22073588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr4:23647388-23647121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:201
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):123, 78

               
               
               Conread position:1-264
               
               
               Cow position:chr4:25596087-25595808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr4:46711205-46710926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):123, 13

               
               
               Conread position:1-264
               
               
               Cow position:chr4:59870931-59871227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):28, 117

               
               
               Conread position:1-264
               
               
               Cow position:chr4:61242669-61242939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr4:61450224-61450490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):179, 27

               
               
               Conread position:1-265
               
               
               Cow position:chr4:2190897-2190621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:207
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr4:8413667-8413387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):27, 107

               
               
               Conread position:1-265
               
               
               Cow position:chr4:9136721-9137000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr4:14471127-14470845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):14, 108

               
               
               Conread position:1-265
               
               
               Cow position:chr4:17775146-17774868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):123, 76

               
               
               Conread position:1-265
               
               
               Cow position:chr4:19502354-19502079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):194, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr4:25579520-25579804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):123, 75

               
               
               Conread position:1-265
               
               
               Cow position:chr4:32770504-32770231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-265
               
               
               Cow position:chr4:35575564-35575844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-265
               
               
               Cow position:chr4:38181134-38181416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):124, 27

               
               
               Conread position:1-265
               
               
               Cow position:chr4:45644864-45644590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):123, 60

               
               
               Conread position:1-265
               
               
               Cow position:chr4:46585506-46585226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr4:51898443-51898725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):64, 109

               
               
               Conread position:1-265
               
               
               Cow position:chr4:52178105-52177825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr4:54931227-54930950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-265
               
               
               Cow position:chr4:61970430-61970158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):151, 42

               
               
               Conread position:1-265
               
               
               Cow position:chr4:61973023-61972752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):63, 46

               
               
               Conread position:1-266
               
               
               Cow position:chr4:6034645-6034367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):123, 8

               
               
               Conread position:1-267
               
               
               Cow position:chr4:25878841-25879121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr4:359283-359567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr4:652428-652711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr4:1007290-1007574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr4:1499694-1499422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):65, 32

               
               
               Conread position:1-268
               
               
               Cow position:chr4:2263310-2263028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):122, 97

               
               
               Conread position:1-268
               
               
               Cow position:chr4:2609682-2609964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr4:3354545-3354262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:215
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):82, 75

               
               
               Conread position:1-268
               
               
               Cow position:chr4:6030338-6030609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr4:6210136-6210418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr4:6414153-6414436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr4:6446157-6446440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr4:6457343-6457053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr4:6862804-6862521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr4:8377739-8377454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):92, 49

               
               
               Conread position:1-268
               
               
               Cow position:chr4:8414917-8414634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr4:8674128-8674412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr4:8890479-8890198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):123, 26

               
               
               Conread position:1-268
               
               
               Cow position:chr4:9519740-9520022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):33, 161

               
               
               Conread position:1-268
               
               
               Cow position:chr4:10017136-10016857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):113, 274

               
               
               Conread position:1-268
               
               
               Cow position:chr4:10122806-10123090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):47, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr4:10135987-10136268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr4:10553639-10553927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr4:11872466-11872186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):119, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr4:11930363-11930650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):74, 111

               
               
               Conread position:1-268
               
               
               Cow position:chr4:12237848-12237565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):82, 75

               
               
               Conread position:1-268
               
               
               Cow position:chr4:13979444-13979724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:1-268
               
               
               Cow position:chr4:14142717-14142997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):62, 121

               
               
               Conread position:1-268
               
               
               Cow position:chr4:14353240-14352955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr4:14742711-14742985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 6

               
               
               Conread position:1-268
               
               
               Cow position:chr4:14919458-14919737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-268
               
               
               Cow position:chr4:16364722-16365005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-268
               
               
               Cow position:chr4:16642216-16642498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr4:16859320-16859038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):123, 57

               
               
               Conread position:1-268
               
               
               Cow position:chr4:17033100-17032817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr4:17235420-17235700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr4:17877358-17877642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):104, 176

               
               
               Conread position:1-268
               
               
               Cow position:chr4:18255307-18255590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr4:18547133-18547416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr4:20616317-20616030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr4:20644026-20644309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr4:21553735-21553456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):82, 49

               
               
               Conread position:1-268
               
               
               Cow position:chr4:22052025-22051741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):68, 83

               
               
               Conread position:1-268
               
               
               Cow position:chr4:22237030-22236749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:212
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):123, 60

               
               
               Conread position:1-268
               
               
               Cow position:chr4:22841793-22842076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):124, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr4:23150258-23149975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):82, 75

               
               
               Conread position:1-268
               
               
               Cow position:chr4:23303868-23303585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr4:24002523-24002243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 38

               
               
               Conread position:1-268
               
               
               Cow position:chr4:26874506-26874224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):110, 265

               
               
               Conread position:1-268
               
               
               Cow position:chr4:27178224-27178506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):32, 38

               
               
               Conread position:1-268
               
               
               Cow position:chr4:27337611-27337894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr4:27546202-27546485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr4:28173472-28173190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):35, 21

               
               
               Conread position:1-268
               
               
               Cow position:chr4:28613260-28613547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):24, 110

               
               
               Conread position:1-268
               
               
               Cow position:chr4:30474781-30475064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr4:30573900-30574182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):123, 35

               
               
               Conread position:1-268
               
               
               Cow position:chr4:33069441-33069158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr4:33496960-33497243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr4:34223335-34223618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr4:36025870-36025588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):82, 75

               
               
               Conread position:1-268
               
               
               Cow position:chr4:36899777-36900057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):112, 173

               
               
               Conread position:1-268
               
               
               Cow position:chr4:37169371-37169087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):67, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr4:37553601-37553318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):39, 32

               
               
               Conread position:1-268
               
               
               Cow position:chr4:37703709-37703992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr4:37707754-37707471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr4:38152856-38152575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):126, 37

               
               
               Conread position:1-268
               
               
               Cow position:chr4:38706511-38706229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):123, 40

               
               
               Conread position:1-268
               
               
               Cow position:chr4:39421996-39422279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):82, 75

               
               
               Conread position:1-268
               
               
               Cow position:chr4:40410909-40410629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):123, 35

               
               
               Conread position:1-268
               
               
               Cow position:chr4:42672613-42672897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr4:43316255-43315972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):123, 52

               
               
               Conread position:1-268
               
               
               Cow position:chr4:43370413-43370124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:214
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):35, 21

               
               
               Conread position:1-268
               
               
               Cow position:chr4:43884491-43884768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):92, 55

               
               
               Conread position:1-268
               
               
               Cow position:chr4:43896099-43895811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr4:44051676-44051955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr4:46254075-46253792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr4:46743846-46743564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):123, 82

               
               
               Conread position:1-268
               
               
               Cow position:chr4:47116704-47116985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:205
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr4:47264178-47264461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr4:48410105-48409833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:205
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):79, 52

               
               
               Conread position:1-268
               
               
               Cow position:chr4:48736285-48736562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):123, 13

               
               
               Conread position:1-268
               
               
               Cow position:chr4:49408923-49409191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):35, 21

               
               
               Conread position:1-268
               
               
               Cow position:chr4:49745072-49745354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr4:50019146-50018865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):178, 172

               
               
               Conread position:1-268
               
               
               Cow position:chr4:50193937-50194218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):124, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr4:54170816-54171094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):123, 54

               
               
               Conread position:1-268
               
               
               Cow position:chr4:54695632-54695352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):123, 73

               
               
               Conread position:1-268
               
               
               Cow position:chr4:54757863-54757588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):187, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr4:61673581-61673299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):123, 73

               
               
               Conread position:1-268
               
               
               Cow position:chr4:62014556-62014274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr4:64875496-64875780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):123, 175

               
               
               Conread position:1-268
               
               
               Cow position:chr4:68944731-68944450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:212
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-269
               
               
               Cow position:chr4:3252152-3251875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):140, 35

               
               
               Conread position:1-269
               
               
               Cow position:chr4:8120722-8120437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):35, 26

               
               
               Conread position:1-269
               
               
               Cow position:chr4:8558914-8558638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):123, 94

               
               
               Conread position:1-269
               
               
               Cow position:chr4:8704213-8704498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):51, 108

               
               
               Conread position:1-269
               
               
               Cow position:chr4:9649465-9649754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):35, 45

               
               
               Conread position:1-269
               
               
               Cow position:chr4:14152524-14152801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):188, 90

               
               
               Conread position:1-269
               
               
               Cow position:chr4:19492960-19493247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:1-269
               
               
               Cow position:chr4:34044322-34044053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):123, 40

               
               
               Conread position:1-269
               
               
               Cow position:chr4:34713216-34713497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr4:47774190-47773905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:1-269
               
               
               Cow position:chr4:55522746-55523029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-269
               
               
               Cow position:chr4:65464651-65464374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr4:65539138-65538848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):123, 66

               
               
               Conread position:1-271
               
               
               Cow position:chr4:30004610-30004333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):123, 221

               
               
               Conread position:1-271
               
               
               Cow position:chr4:51740293-51740010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):123, 49

               
               
               Conread position:1-272
               
               
               Cow position:chr4:46370515-46370228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-274
               
               
               Cow position:chr4:13589538-13589823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-274
               
               
               Cow position:chr4:28399961-28399675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):14, 107

               
               
               Conread position:1-274
               
               
               Cow position:chr4:61954002-61954298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):35, 55

               
               
               Conread position:1-276
               
               
               Cow position:chr4:44450141-44449851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:1-277
               
               
               Cow position:chr4:13143078-13142789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:211
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):122, 51

               
               
               Conread position:1-277
               
               
               Cow position:chr4:22743783-22744063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):32, 38

               
               
               Conread position:1-277
               
               
               Cow position:chr4:66119370-66119077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):35, 26

               
               
               Conread position:1-279
               
               
               Cow position:chr4:61817003-61816709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-281
               
               
               Cow position:chr4:32249892-32250189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:216
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):48, 107

               
               
               Conread position:1-283
               
               
               Cow position:chr4:21064494-21064773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-284
               
               
               Cow position:chr4:14813968-14814269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):123, 174

               
               
               Conread position:1-284
               
               
               Cow position:chr4:29035362-29035660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):122, 65

               
               
               Conread position:1-284
               
               
               Cow position:chr4:46709082-46708786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:220
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):123, 42

               
               
               Conread position:1-284
               
               
               Cow position:chr4:55271313-55271014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-285
               
               
               Cow position:chr4:52086553-52086845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:219
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):67, 27

               
               
               Conread position:1-294
               
               
               Cow position:chr4:67407931-67408244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):20, 110

               
               
               Conread position:1-297
               
               
               Cow position:chr4:12588994-12589307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:223
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-301
               
               
               Cow position:chr4:9845049-9845363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):16, 9

               
               
               Conread position:1-301
               
               
               Cow position:chr4:27560493-27560814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-301
               
               
               Cow position:chr4:58948530-58948194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):57, 307

               
               
               Conread position:1-303
               
               
               Cow position:chr4:15462864-15462545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-303
               
               
               Cow position:chr4:23508723-23509034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:229
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-303
               
               
               Cow position:chr4:33357309-33357630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):123, 85

               
               
               Conread position:1-304
               
               
               Cow position:chr4:21844533-21844833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:219
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):123, 29

               
               
               Conread position:1-306
               
               
               Cow position:chr4:54190550-54190866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:232
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):28, 91

               
               
               Conread position:2-188
               
               
               Cow position:chr4:44901666-44901855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:2-264
               
               
               Cow position:chr4:14230182-14229903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:205
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):121, 105

               
               
               Conread position:2-266
               
               
               Cow position:chr4:10994099-10993820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):66, 25

               
               
               Conread position:2-268
               
               
               Cow position:chr4:3893171-3893456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:2-268
               
               
               Cow position:chr4:52601501-52601782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):122, 70

               
               
               Conread position:2-269
               
               
               Cow position:chr4:39009410-39009696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):74, 26

               
               
               Conread position:2-269
               
               
               Cow position:chr4:65891461-65891719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):121, 28

               
               
               Conread position:2-272
               
               
               Cow position:chr4:11218264-11218548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):121, 105

               
               
               Conread position:2-277
               
               
               Cow position:chr4:54111008-54111292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):120, 34

               
               
               Conread position:2-291
               
               
               Cow position:chr4:2349350-2349045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:3-188
               
               
               Cow position:chr4:47752696-47752877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:3-258
               
               
               Cow position:chr4:4127082-4127347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):188, 106

               
               
               Conread position:3-265
               
               
               Cow position:chr4:12752224-12752501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-268
               
               
               Cow position:chr4:213327-213597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):121, 58

               
               
               Conread position:3-268
               
               
               Cow position:chr4:607008-607289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-268
               
               
               Cow position:chr4:20243584-20243856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):120, 104

               
               
               Conread position:3-268
               
               
               Cow position:chr4:21589160-21588881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 20

               
               
               Conread position:3-285
               
               
               Cow position:chr4:50760678-50760373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):81, 73

               
               
               Conread position:4-188
               
               
               Cow position:chr4:8068280-8068472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:4-292
               
               
               Cow position:chr4:37691976-37691675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):120, 103

               
               
               Conread position:5-264
               
               
               Cow position:chr4:37786706-37786964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):119, 86

               
               
               Conread position:6-188
               
               
               Cow position:chr4:4185573-4185753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):118, 70

               
               
               Conread position:6-268
               
               
               Cow position:chr4:26008895-26009172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):118, 28

               
               
               Conread position:6-268
               
               
               Cow position:chr4:44839435-44839159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):75, 68

               
               
               Conread position:6-269
               
               
               Cow position:chr4:27287703-27287419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):95, 30

               
               
               Conread position:7-188
               
               
               Cow position:chr4:61651147-61650963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):38, 101

               
               
               Conread position:7-268
               
               
               Cow position:chr4:17330783-17330506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):29, 22

               
               
               Conread position:7-268
               
               
               Cow position:chr4:48030262-48030541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:7-300
               
               
               Cow position:chr4:41866672-41866968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):129, 11

               
               
               Conread position:8-269
               
               
               Cow position:chr4:53822342-53822617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):85, 93

               
               
               Conread position:9-188
               
               
               Cow position:chr4:27292502-27292328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:9-263
               
               
               Cow position:chr4:46549539-46549810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):151, 99

               
               
               Conread position:9-268
               
               
               Cow position:chr4:6395497-6395772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):115, 98

               
               
               Conread position:9-269
               
               
               Cow position:chr4:65826417-65826139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):115, 99

               
               
               Conread position:10-263
               
               
               Cow position:chr4:61898078-61897811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):70, 28

               
               
               Conread position:10-268
               
               
               Cow position:chr4:5610617-5610344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):114, 97

               
               
               Conread position:11-265
               
               
               Cow position:chr4:18602804-18602534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:201
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):113, 96

               
               
               Conread position:11-294
               
               
               Cow position:chr4:55508948-55508670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):116, 52

               
               
               Conread position:12-188
               
               
               Cow position:chr4:35940543-35940363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):27, 97

               
               
               Conread position:14-265
               
               
               Cow position:chr4:46456612-46456346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):124, 5

               
               
               Conread position:14-268
               
               
               Cow position:chr4:46526457-46526725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):109, 14

               
               
               Conread position:15-258
               
               
               Cow position:chr4:16092156-16091902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):104, 22

               
               
               Conread position:15-264
               
               
               Cow position:chr4:57239909-57240171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):164, 38

               
               
               Conread position:15-282
               
               
               Cow position:chr4:26323200-26323483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):108, 63

               
               
               Conread position:16-270
               
               
               Cow position:chr4:11390126-11389851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):108, 92

               
               
               Conread position:18-268
               
               
               Cow position:chr4:9795900-9795645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):106, 42

               
               
               Conread position:19-188
               
               
               Cow position:chr4:19420797-19420968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):17, 9

               
               
               Conread position:19-268
               
               
               Cow position:chr4:60124317-60124052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):105, 88

               
               
               Conread position:20-269
               
               
               Cow position:chr4:10992746-10992471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):104, 87

               
               
               Conread position:21-188
               
               
               Cow position:chr4:58484830-58485002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):10, 92

               
               
               Conread position:21-265
               
               
               Cow position:chr4:61391735-61391478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):108, 49

               
               
               Conread position:21-268
               
               
               Cow position:chr4:41639742-41640001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):103, 8

               
               
               Conread position:22-268
               
               
               Cow position:chr4:17091538-17091276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):102, 85

               
               
               Conread position:22-268
               
               
               Cow position:chr4:49814550-49814288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):102, 85

               
               
               Conread position:22-303
               
               
               Cow position:chr4:44612431-44612711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):11, 17

               
               
               Conread position:23-265
               
               
               Cow position:chr4:51850664-51850918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):39, 54

               
               
               Conread position:23-269
               
               
               Cow position:chr4:1356042-1355788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):101, 35

               
               
               Conread position:25-269
               
               
               Cow position:chr4:46668050-46668297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):11, 65

               
               
               Conread position:28-258
               
               
               Cow position:chr4:41186897-41186649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:28-265
               
               
               Cow position:chr4:22101794-22101544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):96, 79

               
               
               Conread position:29-263
               
               
               Cow position:chr4:30973818-30974058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):96, 77

               
               
               Conread position:31-268
               
               
               Cow position:chr4:38067363-38067609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):93, 75

               
               
               Conread position:32-265
               
               
               Cow position:chr4:12464322-12464569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):92, 75

               
               
               Conread position:33-269
               
               
               Cow position:chr4:11091205-11090953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):91, 74

               
               
               Conread position:35-268
               
               
               Cow position:chr4:25806376-25806625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:36-265
               
               
               Cow position:chr4:23526157-23526414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:36-265
               
               
               Cow position:chr4:53832529-53832774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):83, 53

               
               
               Conread position:37-268
               
               
               Cow position:chr4:41441045-41441291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):87, 33

               
               
               Conread position:38-188
               
               
               Cow position:chr4:570078-570229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:41-263
               
               
               Cow position:chr4:53829915-53830153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:185
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):84, 66

               
               
               Conread position:41-265
               
               
               Cow position:chr4:36350294-36350534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):83, 66

               
               
               Conread position:41-268
               
               
               Cow position:chr4:29529379-29529134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):67, 136

               
               
               Conread position:42-265
               
               
               Cow position:chr4:1404524-1404760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):82, 65

               
               
               Conread position:52-268
               
               
               Cow position:chr4:59643073-59643304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):71, 55

               
               
               Conread position:55-268
               
               
               Cow position:chr4:47047238-47047466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):69, 52

               
               
               Conread position:57-300
               
               
               Cow position:chr4:5631788-5631528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):67, 50

               
               
               Conread position:60-265
               
               
               Cow position:chr4:19584199-19584427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:66-268
               
               
               Cow position:chr4:43147910-43148130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):58, 41

               
               
               Conread position:67-268
               
               
               Cow position:chr4:24119406-24119185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:70-284
               
               
               Cow position:chr4:38998945-38999172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):52, 37

               
               
               Conread position:76-262
               
               
               Cow position:chr4:4672814-4672613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:77-268
               
               
               Cow position:chr4:7258907-7258701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):47, 30

               
               
               Conread position:82-269
               
               
               Cow position:chr4:9445165-9444962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):31, 24

               
               
               Conread position:83-268
               
               
               Cow position:chr4:53999995-53999794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):41, 24

               
               
               Conread position:88-288
               
               
               Cow position:chr4:46529500-46529285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:89-267
               
               
               Cow position:chr4:51002684-51002877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):35, 18

               
               
               Conread position:120-303
               
               
               Cow position:chr4:3275005-3274802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:129-303
               
               
               Cow position:chr4:26746006-26746195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):61, 148

               
               
               Conread position:1-156
               
               
               Cow position:chr5:59470612-59470454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):113, 106

               
               
               Conread position:1-165
               
               
               Cow position:chr5:46625779-46625615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):47, 27

               
               
               Conread position:1-171
               
               
               Cow position:chr5:35180734-35180906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-180
               
               
               Cow position:chr5:5849178-5848997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-180
               
               
               Cow position:chr5:29459837-29460018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):114, 97

               
               
               Conread position:1-186
               
               
               Cow position:chr5:37645541-37645728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):26, 76

               
               
               Conread position:1-188
               
               
               Cow position:chr5:59637-59448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):123, 109

               
               
               Conread position:1-188
               
               
               Cow position:chr5:34638369-34638558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-188
               
               
               Cow position:chr5:35207737-35207926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-188
               
               
               Cow position:chr5:40890085-40889896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):123, 99

               
               
               Conread position:1-188
               
               
               Cow position:chr5:45705507-45705696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-188
               
               
               Cow position:chr5:50483437-50483248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:157
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-188
               
               
               Cow position:chr5:75745225-75745409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):123, 26

               
               
               Conread position:1-189
               
               
               Cow position:chr5:6576087-6575896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):39, 107

               
               
               Conread position:1-189
               
               
               Cow position:chr5:11230375-11230190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):41, 27

               
               
               Conread position:1-196
               
               
               Cow position:chr5:10523427-10523628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:1-196
               
               
               Cow position:chr5:24996971-24996781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):123, 89

               
               
               Conread position:1-211
               
               
               Cow position:chr5:31217590-31217804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):123, 62

               
               
               Conread position:1-241
               
               
               Cow position:chr5:12352590-12352332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:1-248
               
               
               Cow position:chr5:69460878-69461143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:201
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):16, 76

               
               
               Conread position:1-256
               
               
               Cow position:chr5:6286868-6286596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:1-257
               
               
               Cow position:chr5:47750428-47750698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):32, 21

               
               
               Conread position:1-257
               
               
               Cow position:chr5:70102329-70102057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:204
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):83, 107

               
               
               Conread position:1-258
               
               
               Cow position:chr5:3441925-3442192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):119, 107

               
               
               Conread position:1-258
               
               
               Cow position:chr5:12315797-12316066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):114, 97

               
               
               Conread position:1-258
               
               
               Cow position:chr5:14630435-14630159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):31, 109

               
               
               Conread position:1-258
               
               
               Cow position:chr5:15363370-15363642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):119, 106

               
               
               Conread position:1-258
               
               
               Cow position:chr5:19780532-19780258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:1-258
               
               
               Cow position:chr5:67462456-67462725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):124, 105

               
               
               Conread position:1-260
               
               
               Cow position:chr5:3500631-3500356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:1-260
               
               
               Cow position:chr5:3789724-3789999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:1-260
               
               
               Cow position:chr5:4071348-4071624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-261
               
               
               Cow position:chr5:39299003-39299280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:1-261
               
               
               Cow position:chr5:74644184-74643909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-262
               
               
               Cow position:chr5:26467098-26467375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-262
               
               
               Cow position:chr5:63388224-63388501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-262
               
               
               Cow position:chr5:64823826-64823547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):115, 106

               
               
               Conread position:1-263
               
               
               Cow position:chr5:29969109-29969387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):41, 27

               
               
               Conread position:1-263
               
               
               Cow position:chr5:31097326-31097051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-263
               
               
               Cow position:chr5:59082716-59082438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr5:17027567-17027853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):114, 22

               
               
               Conread position:1-264
               
               
               Cow position:chr5:17645410-17645137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:205
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):123, 62

               
               
               Conread position:1-264
               
               
               Cow position:chr5:31145300-31145027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr5:31645731-31646008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):197, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr5:34464107-34463834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 64

               
               
               Conread position:1-264
               
               
               Cow position:chr5:43984584-43984862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 87

               
               
               Conread position:1-264
               
               
               Cow position:chr5:47343375-47343654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr5:54876188-54875922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr5:59779677-59779403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):122, 44

               
               
               Conread position:1-264
               
               
               Cow position:chr5:59782278-59782004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):122, 44

               
               
               Conread position:1-265
               
               
               Cow position:chr5:2333056-2332768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):122, 148

               
               
               Conread position:1-265
               
               
               Cow position:chr5:3582053-3582335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:209
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-265
               
               
               Cow position:chr5:4166149-4166426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):123, 35

               
               
               Conread position:1-265
               
               
               Cow position:chr5:5826845-5826565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):123, 99

               
               
               Conread position:1-265
               
               
               Cow position:chr5:6670679-6670400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):122, 75

               
               
               Conread position:1-265
               
               
               Cow position:chr5:17387119-17386838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr5:17982912-17982632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr5:21616943-21617211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):32, 76

               
               
               Conread position:1-265
               
               
               Cow position:chr5:23745302-23745025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-265
               
               
               Cow position:chr5:25926936-25926655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr5:26053232-26053512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr5:26505927-26505650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr5:28229602-28229883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr5:31730671-31730942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):180, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr5:34300369-34300647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):121, 109

               
               
               Conread position:1-265
               
               
               Cow position:chr5:47871570-47871294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):39, 107

               
               
               Conread position:1-265
               
               
               Cow position:chr5:51151885-51151607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr5:53855185-53855460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):92, 108

               
               
               Conread position:1-265
               
               
               Cow position:chr5:54405419-54405138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):79, 73

               
               
               Conread position:1-265
               
               
               Cow position:chr5:61055153-61054874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr5:62436620-62436904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:1-265
               
               
               Cow position:chr5:63647991-63647711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-265
               
               
               Cow position:chr5:68871645-68871915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):189, 97

               
               
               Conread position:1-265
               
               
               Cow position:chr5:73069927-73070203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):122, 77

               
               
               Conread position:1-266
               
               
               Cow position:chr5:24643335-24643058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-267
               
               
               Cow position:chr5:19470701-19470425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):187, 106

               
               
               Conread position:1-267
               
               
               Cow position:chr5:24087549-24087274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-267
               
               
               Cow position:chr5:59874048-59873767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr5:279679-279397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr5:351357-351073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):123, 175

               
               
               Conread position:1-268
               
               
               Cow position:chr5:411218-410936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):82, 22

               
               
               Conread position:1-268
               
               
               Cow position:chr5:825709-825992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr5:1338423-1338144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr5:1394959-1394667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):26, 115

               
               
               Conread position:1-268
               
               
               Cow position:chr5:2917956-2918239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-268
               
               
               Cow position:chr5:3544796-3545079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):106, 174

               
               
               Conread position:1-268
               
               
               Cow position:chr5:4753633-4753350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr5:5080958-5081241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr5:5924482-5924199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr5:5937800-5938083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr5:6044762-6045045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr5:6455162-6454880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr5:6585027-6584746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr5:7175799-7176082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr5:7397022-7397305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr5:8178658-8178941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr5:9001862-9001588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr5:10065935-10065658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):128, 44

               
               
               Conread position:1-268
               
               
               Cow position:chr5:10417847-10417564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr5:10772329-10772046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr5:10853333-10853055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):113, 20

               
               
               Conread position:1-268
               
               
               Cow position:chr5:13807261-13806978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr5:14551102-14550827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr5:15362556-15362828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):104, 214

               
               
               Conread position:1-268
               
               
               Cow position:chr5:15478585-15478867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):36, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr5:15722826-15722536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):61, 113

               
               
               Conread position:1-268
               
               
               Cow position:chr5:16206666-16206383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr5:16508562-16508855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:212
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):118, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr5:18072415-18072133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr5:18557917-18557634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr5:18573646-18573929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr5:21189718-21190001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr5:21943852-21944140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):10, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr5:23777778-23778061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr5:26101220-26101503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-268
               
               
               Cow position:chr5:27046408-27046691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr5:29680564-29680837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr5:29827529-29827812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr5:30302374-30302657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr5:30582826-30583110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr5:30816189-30816474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr5:31119696-31119413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):113, 174

               
               
               Conread position:1-268
               
               
               Cow position:chr5:31470099-31469824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr5:31709792-31710076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):120, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr5:32754934-32754653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):34, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr5:34506450-34506167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr5:34709268-34709551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr5:37288683-37288968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):92, 176

               
               
               Conread position:1-268
               
               
               Cow position:chr5:37380585-37380869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):129, 175

               
               
               Conread position:1-268
               
               
               Cow position:chr5:37736162-37736444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):82, 75

               
               
               Conread position:1-268
               
               
               Cow position:chr5:39242869-39242589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):157, 83

               
               
               Conread position:1-268
               
               
               Cow position:chr5:39334082-39333800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):119, 105

               
               
               Conread position:1-268
               
               
               Cow position:chr5:41586775-41587058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr5:41980885-41981160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):122, 54

               
               
               Conread position:1-268
               
               
               Cow position:chr5:43031438-43031162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr5:43437443-43437158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):107, 177

               
               
               Conread position:1-268
               
               
               Cow position:chr5:45179348-45179065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr5:45999547-45999262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr5:46235332-46235047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr5:46653372-46653662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):106, 52

               
               
               Conread position:1-268
               
               
               Cow position:chr5:47055448-47055165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr5:47560059-47559777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 54

               
               
               Conread position:1-268
               
               
               Cow position:chr5:47590094-47589812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr5:47704659-47704376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr5:48972062-48972350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):77, 111

               
               
               Conread position:1-268
               
               
               Cow position:chr5:49116851-49116577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:1-268
               
               
               Cow position:chr5:49522202-49522487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr5:49970477-49970194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr5:50622745-50622462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:213
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr5:50645977-50645693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr5:51309444-51309726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):123, 99

               
               
               Conread position:1-268
               
               
               Cow position:chr5:51746719-51747000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:214
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr5:52289257-52289531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:198
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr5:54714266-54713983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr5:54868894-54869176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):123, 73

               
               
               Conread position:1-268
               
               
               Cow position:chr5:55631565-55631848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr5:55723030-55723313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr5:56467182-56467463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):123, 67

               
               
               Conread position:1-268
               
               
               Cow position:chr5:57879368-57879651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr5:58004721-58005003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:211
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr5:58202034-58202316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-268
               
               
               Cow position:chr5:58245832-58246115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr5:58323669-58323952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr5:58770371-58770091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):112, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr5:59147108-59147390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr5:59877262-59876979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-268
               
               
               Cow position:chr5:62427741-62428024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr5:64778505-64778222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr5:69466577-69466860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):123, 97

               
               
               Conread position:1-268
               
               
               Cow position:chr5:70960671-70960389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):123, 62

               
               
               Conread position:1-268
               
               
               Cow position:chr5:75754623-75754339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):123, 175

               
               
               Conread position:1-269
               
               
               Cow position:chr5:2428247-2427967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):92, 120

               
               
               Conread position:1-269
               
               
               Cow position:chr5:3281392-3281108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 110

               
               
               Conread position:1-269
               
               
               Cow position:chr5:7277388-7277671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):94, 75

               
               
               Conread position:1-269
               
               
               Cow position:chr5:7498484-7498200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr5:14636078-14635794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1-269
               
               
               Cow position:chr5:15598761-15598474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):52, 110

               
               
               Conread position:1-269
               
               
               Cow position:chr5:31634926-31635208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):123, 48

               
               
               Conread position:1-269
               
               
               Cow position:chr5:32378345-32378631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):46, 284

               
               
               Conread position:1-269
               
               
               Cow position:chr5:34923649-34923365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr5:41976362-41976085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):35, 61

               
               
               Conread position:1-269
               
               
               Cow position:chr5:46708655-46708940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:215
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):35, 99

               
               
               Conread position:1-269
               
               
               Cow position:chr5:46732859-46732577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr5:51165808-51165526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):123, 26

               
               
               Conread position:1-269
               
               
               Cow position:chr5:51293257-51292971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):123, 42

               
               
               Conread position:1-269
               
               
               Cow position:chr5:59064944-59065229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr5:65312451-65312732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-270
               
               
               Cow position:chr5:6060131-6059846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-270
               
               
               Cow position:chr5:53005758-53005474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:1-271
               
               
               Cow position:chr5:57625869-57626144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-272
               
               
               Cow position:chr5:37586567-37586279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:214
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):67, 107

               
               
               Conread position:1-273
               
               
               Cow position:chr5:1105384-1105096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:212
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1-273
               
               
               Cow position:chr5:14904580-14904292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 106

               
               
               Conread position:1-274
               
               
               Cow position:chr5:11631484-11631195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-274
               
               
               Cow position:chr5:27015170-27015457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):123, 6

               
               
               Conread position:1-275
               
               
               Cow position:chr5:12640753-12640463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-275
               
               
               Cow position:chr5:58460929-58460639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:214
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-277
               
               
               Cow position:chr5:29742057-29741764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-277
               
               
               Cow position:chr5:34528055-34528333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):194, 10

               
               
               Conread position:1-277
               
               
               Cow position:chr5:35826077-35826362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):123, 64

               
               
               Conread position:1-283
               
               
               Cow position:chr5:10261767-10261468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-284
               
               
               Cow position:chr5:23354211-23354513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):68, 300

               
               
               Conread position:1-284
               
               
               Cow position:chr5:24348600-24348889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:220
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):123, 103

               
               
               Conread position:1-284
               
               
               Cow position:chr5:28247653-28247954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):129, 107

               
               
               Conread position:1-284
               
               
               Cow position:chr5:39363373-39363670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-284
               
               
               Cow position:chr5:41410938-41410642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):123, 70

               
               
               Conread position:1-284
               
               
               Cow position:chr5:41523309-41523015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):123, 84

               
               
               Conread position:1-284
               
               
               Cow position:chr5:42671533-42671254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:205
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):128, 171

               
               
               Conread position:1-284
               
               
               Cow position:chr5:56820739-56821031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 9

               
               
               Conread position:1-284
               
               
               Cow position:chr5:66257124-66257420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:221
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-285
               
               
               Cow position:chr5:7921911-7921610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):123, 54

               
               
               Conread position:1-286
               
               
               Cow position:chr5:27656355-27656652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):122, 239

               
               
               Conread position:1-286
               
               
               Cow position:chr5:32394088-32394375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-290
               
               
               Cow position:chr5:21828332-21828634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:212
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-290
               
               
               Cow position:chr5:55684600-55684907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):34, 108

               
               
               Conread position:1-292
               
               
               Cow position:chr5:34669594-34669290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):122, 107

               
               
               Conread position:1-303
               
               
               Cow position:chr5:1246716-1247036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 106

               
               
               Conread position:1-303
               
               
               Cow position:chr5:24837563-24837243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):75, 8

               
               
               Conread position:1-303
               
               
               Cow position:chr5:70249627-70249950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):111, 97

               
               
               Conread position:1-305
               
               
               Cow position:chr5:45846215-45845897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 11

               
               
               Conread position:2-188
               
               
               Cow position:chr5:72007398-72007211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):122, 37

               
               
               Conread position:2-190
               
               
               Cow position:chr5:55820855-55821048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:2-262
               
               
               Cow position:chr5:54126563-54126833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):122, 44

               
               
               Conread position:2-265
               
               
               Cow position:chr5:6839671-6839386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):112, 105

               
               
               Conread position:2-265
               
               
               Cow position:chr5:44054556-44054279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:208
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):121, 63

               
               
               Conread position:2-265
               
               
               Cow position:chr5:46080782-46080500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:2-265
               
               
               Cow position:chr5:46130306-46130024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:2-268
               
               
               Cow position:chr5:360465-360186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:211
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):34, 87

               
               
               Conread position:2-268
               
               
               Cow position:chr5:4600251-4599973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-268
               
               
               Cow position:chr5:36724242-36723960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:2-268
               
               
               Cow position:chr5:40058055-40058336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):117, 105

               
               
               Conread position:2-268
               
               
               Cow position:chr5:54337401-54337682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):122, 47

               
               
               Conread position:2-268
               
               
               Cow position:chr5:64844639-64844358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:213
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):57, 44

               
               
               Conread position:2-268
               
               
               Cow position:chr5:66112669-66112397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):106, 199

               
               
               Conread position:2-268
               
               
               Cow position:chr5:70593501-70593221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:207
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):125, 105

               
               
               Conread position:2-284
               
               
               Cow position:chr5:37190611-37190318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):196, 123

               
               
               Conread position:2-304
               
               
               Cow position:chr5:28223941-28224248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:223
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):123, 28

               
               
               Conread position:3-188
               
               
               Cow position:chr5:4348209-4348024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:149
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):119, 97

               
               
               Conread position:3-188
               
               
               Cow position:chr5:27154502-27154689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-264
               
               
               Cow position:chr5:16894291-16894014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-268
               
               
               Cow position:chr5:19978410-19978127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):31, 108

               
               
               Conread position:3-268
               
               
               Cow position:chr5:36867749-36868034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-302
               
               
               Cow position:chr5:29559814-29560129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):121, 30

               
               
               Conread position:3-306
               
               
               Cow position:chr5:34115120-34115444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:4-264
               
               
               Cow position:chr5:26096777-26097052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):119, 24

               
               
               Conread position:4-268
               
               
               Cow position:chr5:29770996-29771277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):41, 107

               
               
               Conread position:5-257
               
               
               Cow position:chr5:5812604-5812336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):106, 152

               
               
               Conread position:5-262
               
               
               Cow position:chr5:38831511-38831242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):7, 31

               
               
               Conread position:5-268
               
               
               Cow position:chr5:3971027-3971304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):117, 102

               
               
               Conread position:5-291
               
               
               Cow position:chr5:23683607-23683304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):119, 73

               
               
               Conread position:6-188
               
               
               Cow position:chr5:1766814-1766629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:6-188
               
               
               Cow position:chr5:9390296-9390113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):121, 101

               
               
               Conread position:6-188
               
               
               Cow position:chr5:20408177-20407993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):118, 94

               
               
               Conread position:6-188
               
               
               Cow position:chr5:34915761-34915569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:6-265
               
               
               Cow position:chr5:27690585-27690307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):118, 104

               
               
               Conread position:6-268
               
               
               Cow position:chr5:26156486-26156209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 30

               
               
               Conread position:6-268
               
               
               Cow position:chr5:37942304-37942034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:209
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):117, 9

               
               
               Conread position:6-297
               
               
               Cow position:chr5:58855589-58855873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):118, 35

               
               
               Conread position:6-302
               
               
               Cow position:chr5:32088279-32087969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 101

               
               
               Conread position:7-265
               
               
               Cow position:chr5:46023699-46023422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):116, 99

               
               
               Conread position:7-268
               
               
               Cow position:chr5:27010772-27011053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):100, 63

               
               
               Conread position:7-268
               
               
               Cow position:chr5:38439338-38439615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):117, 100

               
               
               Conread position:9-258
               
               
               Cow position:chr5:25231524-25231262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):115, 98

               
               
               Conread position:9-263
               
               
               Cow position:chr5:8821502-8821239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):106, 19

               
               
               Conread position:10-258
               
               
               Cow position:chr5:28330838-28330580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):121, 97

               
               
               Conread position:14-262
               
               
               Cow position:chr5:66816091-66815828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):110, 93

               
               
               Conread position:15-154
               
               
               Cow position:chr5:72564224-72564367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:15-188
               
               
               Cow position:chr5:8024707-8024525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:15-189
               
               
               Cow position:chr5:55233279-55233102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):109, 92

               
               
               Conread position:15-277
               
               
               Cow position:chr5:26378176-26377895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):109, 12

               
               
               Conread position:16-268
               
               
               Cow position:chr5:50599563-50599825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):68, 31

               
               
               Conread position:18-268
               
               
               Cow position:chr5:62827261-62826996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):106, 89

               
               
               Conread position:19-188
               
               
               Cow position:chr5:68604279-68604450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):100, 88

               
               
               Conread position:20-284
               
               
               Cow position:chr5:51683748-51683467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):91, 279

               
               
               Conread position:21-258
               
               
               Cow position:chr5:66366030-66366283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):102, 86

               
               
               Conread position:24-258
               
               
               Cow position:chr5:64524382-64524130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):99, 83

               
               
               Conread position:24-268
               
               
               Cow position:chr5:6032494-6032754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):100, 74

               
               
               Conread position:24-270
               
               
               Cow position:chr5:56433092-56433348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):100, 83

               
               
               Conread position:24-270
               
               
               Cow position:chr5:66971898-66972163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:27-258
               
               
               Cow position:chr5:62573594-62573843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):9, 82

               
               
               Conread position:28-270
               
               
               Cow position:chr5:16184595-16184850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):96, 79

               
               
               Conread position:29-268
               
               
               Cow position:chr5:18287171-18287425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):95, 78

               
               
               Conread position:30-188
               
               
               Cow position:chr5:4551816-4551657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):94, 77

               
               
               Conread position:30-277
               
               
               Cow position:chr5:4218388-4218649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):53, 46

               
               
               Conread position:32-268
               
               
               Cow position:chr5:41546384-41546131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):48, 42

               
               
               Conread position:35-265
               
               
               Cow position:chr5:75756128-75756373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):89, 72

               
               
               Conread position:38-188
               
               
               Cow position:chr5:54351638-54351486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):86, 69

               
               
               Conread position:38-268
               
               
               Cow position:chr5:18902080-18902326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:38-269
               
               
               Cow position:chr5:37377382-37377628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):89, 69

               
               
               Conread position:40-269
               
               
               Cow position:chr5:60447762-60448004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):40, 34

               
               
               Conread position:40-306
               
               
               Cow position:chr5:52830962-52831242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):83, 67

               
               
               Conread position:41-188
               
               
               Cow position:chr5:7140568-7140418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):34, 61

               
               
               Conread position:41-262
               
               
               Cow position:chr5:63457033-63456796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):7, 67

               
               
               Conread position:41-268
               
               
               Cow position:chr5:3696484-3696722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):83, 66

               
               
               Conread position:41-268
               
               
               Cow position:chr5:13127987-13127744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):83, 66

               
               
               Conread position:41-268
               
               
               Cow position:chr5:35988832-35989075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):83, 66

               
               
               Conread position:41-268
               
               
               Cow position:chr5:58796126-58795882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):83, 66

               
               
               Conread position:41-269
               
               
               Cow position:chr5:35762807-35763050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):83, 66

               
               
               Conread position:41-275
               
               
               Cow position:chr5:7042200-7041952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):83, 65

               
               
               Conread position:42-268
               
               
               Cow position:chr5:59339335-59339577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):82, 65

               
               
               Conread position:42-282
               
               
               Cow position:chr5:41951563-41951306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):85, 65

               
               
               Conread position:44-268
               
               
               Cow position:chr5:15112711-15112471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):78, 113

               
               
               Conread position:45-254
               
               
               Cow position:chr5:64759211-64758991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):61, 119

               
               
               Conread position:45-269
               
               
               Cow position:chr5:42727271-42727032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):79, 53

               
               
               Conread position:50-269
               
               
               Cow position:chr5:3242934-3242705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):34, 26

               
               
               Conread position:52-258
               
               
               Cow position:chr5:12323268-12323045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:53-268
               
               
               Cow position:chr5:4015226-4014995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):71, 54

               
               
               Conread position:53-268
               
               
               Cow position:chr5:70290012-70290244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:54-263
               
               
               Cow position:chr5:5337674-5337449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):78, 53

               
               
               Conread position:54-275
               
               
               Cow position:chr5:48804891-48804655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):70, 25

               
               
               Conread position:55-188
               
               
               Cow position:chr5:61576049-61576184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):69, 52

               
               
               Conread position:55-268
               
               
               Cow position:chr5:55176416-55176651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):69, 52

               
               
               Conread position:57-265
               
               
               Cow position:chr5:33270004-33270233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:58-304
               
               
               Cow position:chr5:31480686-31480946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):66, 49

               
               
               Conread position:60-284
               
               
               Cow position:chr5:51936696-51936934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):64, 47

               
               
               Conread position:61-306
               
               
               Cow position:chr5:30486789-30487047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):61, 39

               
               
               Conread position:66-265
               
               
               Cow position:chr5:47756306-47756524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):58, 41

               
               
               Conread position:67-269
               
               
               Cow position:chr5:47601350-47601571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 34

               
               
               Conread position:78-256
               
               
               Cow position:chr5:12873302-12873495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):46, 22

               
               
               Conread position:78-265
               
               
               Cow position:chr5:32809450-32809247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):46, 29

               
               
               Conread position:79-261
               
               
               Cow position:chr5:28456959-28456761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):45, 28

               
               
               Conread position:79-261
               
               
               Cow position:chr5:28460261-28460063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):45, 28

               
               
               Conread position:79-284
               
               
               Cow position:chr5:59758948-59759168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):45, 28

               
               
               Conread position:80-303
               
               
               Cow position:chr5:34885852-34885616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):44, 28

               
               
               Conread position:93-269
               
               
               Cow position:chr5:6528249-6528440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):31, 14

               
               
               Conread position:1-157
               
               
               Cow position:chr6:12927208-12927364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-178
               
               
               Cow position:chr6:22332856-22332678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 109

               
               
               Conread position:1-182
               
               
               Cow position:chr6:28482307-28482489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:1-184
               
               
               Cow position:chr6:34503884-34503700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):123, 18

               
               
               Conread position:1-184
               
               
               Cow position:chr6:49391620-49391432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):156, 107

               
               
               Conread position:1-186
               
               
               Cow position:chr6:66234979-66235165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:1-188
               
               
               Cow position:chr6:6200969-6201157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-188
               
               
               Cow position:chr6:25773984-25773798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):114, 123

               
               
               Conread position:1-188
               
               
               Cow position:chr6:32121387-32121577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):115, 46

               
               
               Conread position:1-188
               
               
               Cow position:chr6:51877395-51877583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):129, 14

               
               
               Conread position:1-189
               
               
               Cow position:chr6:10695354-10695540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):123, 16

               
               
               Conread position:1-189
               
               
               Cow position:chr6:12389347-12389546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:1-189
               
               
               Cow position:chr6:16593588-16593774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):112, 39

               
               
               Conread position:1-189
               
               
               Cow position:chr6:26697418-26697234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):123, 23

               
               
               Conread position:1-192
               
               
               Cow position:chr6:50637896-50638089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-196
               
               
               Cow position:chr6:9320920-9321117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-211
               
               
               Cow position:chr6:53811207-53811423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):104, 22

               
               
               Conread position:1-211
               
               
               Cow position:chr6:55170110-55170322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):188, 106

               
               
               Conread position:1-226
               
               
               Cow position:chr6:19059913-19060148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:180
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-236
               
               
               Cow position:chr6:60441635-60441884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-249
               
               
               Cow position:chr6:18474417-18474153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-249
               
               
               Cow position:chr6:57384004-57384258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):187, 15

               
               
               Conread position:1-257
               
               
               Cow position:chr6:43789728-43789459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):69, 86

               
               
               Conread position:1-258
               
               
               Cow position:chr6:4389352-4389624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:204
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-258
               
               
               Cow position:chr6:4468254-4468524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):189, 106

               
               
               Conread position:1-258
               
               
               Cow position:chr6:7009235-7009500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):119, 78

               
               
               Conread position:1-258
               
               
               Cow position:chr6:26914592-26914861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):123, 32

               
               
               Conread position:1-258
               
               
               Cow position:chr6:58075712-58075991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-260
               
               
               Cow position:chr6:3445174-3444905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 106

               
               
               Conread position:1-260
               
               
               Cow position:chr6:19809172-19809444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):107, 82

               
               
               Conread position:1-260
               
               
               Cow position:chr6:26771482-26771207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:205
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-260
               
               
               Cow position:chr6:34476116-34475843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-260
               
               
               Cow position:chr6:56556972-56556697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:202
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-262
               
               
               Cow position:chr6:6768777-6769044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):187, 91

               
               
               Conread position:1-262
               
               
               Cow position:chr6:18448023-18447741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:212
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):128, 106

               
               
               Conread position:1-262
               
               
               Cow position:chr6:23695488-23695765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:203
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr6:3118749-3118466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):122, 37

               
               
               Conread position:1-264
               
               
               Cow position:chr6:18962029-18961753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):123, 29

               
               
               Conread position:1-264
               
               
               Cow position:chr6:18987723-18987986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):121, 18

               
               
               Conread position:1-264
               
               
               Cow position:chr6:21712346-21712625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr6:29239198-29239478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):29, 108

               
               
               Conread position:1-264
               
               
               Cow position:chr6:41232104-41232380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):187, 0

               
               
               Conread position:1-264
               
               
               Cow position:chr6:47171685-47171962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):28, 134

               
               
               Conread position:1-264
               
               
               Cow position:chr6:55538635-55538354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:1-265
               
               
               Cow position:chr6:529215-528933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):37, 76

               
               
               Conread position:1-265
               
               
               Cow position:chr6:1637317-1637037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):125, 113

               
               
               Conread position:1-265
               
               
               Cow position:chr6:1797265-1797545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):123, 114

               
               
               Conread position:1-265
               
               
               Cow position:chr6:2185862-2185582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr6:8205827-8206107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):82, 75

               
               
               Conread position:1-265
               
               
               Cow position:chr6:11453227-11452947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr6:12550758-12551038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr6:12622961-12623241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr6:16645511-16645791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr6:20515215-20515495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:212
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr6:21590217-21590488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1-265
               
               
               Cow position:chr6:25358568-25358847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 27

               
               
               Conread position:1-265
               
               
               Cow position:chr6:28294185-28293905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr6:28343141-28343421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr6:39358841-39358569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr6:42420758-42421037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):121, 99

               
               
               Conread position:1-265
               
               
               Cow position:chr6:42565178-42565456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):120, 27

               
               
               Conread position:1-265
               
               
               Cow position:chr6:44017188-44016902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:1-265
               
               
               Cow position:chr6:47339873-47339586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr6:48567852-48567572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):122, 49

               
               
               Conread position:1-265
               
               
               Cow position:chr6:49442603-49442860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):171, 108

               
               
               Conread position:1-265
               
               
               Cow position:chr6:54648035-54647752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-265
               
               
               Cow position:chr6:55762880-55763160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:209
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr6:58073527-58073813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr6:58390382-58390104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):123, 44

               
               
               Conread position:1-265
               
               
               Cow position:chr6:63094297-63094577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:210
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:89611-89332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):28, 108

               
               
               Conread position:1-268
               
               
               Cow position:chr6:181902-181620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:222948-222667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:479186-479469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:1817374-1817092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):123, 43

               
               
               Conread position:1-268
               
               
               Cow position:chr6:1834635-1834914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):35, 26

               
               
               Conread position:1-268
               
               
               Cow position:chr6:2074138-2074421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 109

               
               
               Conread position:1-268
               
               
               Cow position:chr6:2390037-2389754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:2867820-2867537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:2875396-2875122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:201
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:3152852-3153135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:3271841-3271556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr6:3885867-3885583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr6:4865049-4864765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):38, 111

               
               
               Conread position:1-268
               
               
               Cow position:chr6:6182087-6181803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-268
               
               
               Cow position:chr6:6613931-6614208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):189, 52

               
               
               Conread position:1-268
               
               
               Cow position:chr6:7467011-7466728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:8636766-8637048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:8753818-8753536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:9737624-9737339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:10266492-10266212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr6:11169205-11169481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):189, 72

               
               
               Conread position:1-268
               
               
               Cow position:chr6:11288828-11288544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-268
               
               
               Cow position:chr6:11442330-11442049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):189, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr6:11869296-11869014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):123, 97

               
               
               Conread position:1-268
               
               
               Cow position:chr6:14064167-14063885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:14696881-14696599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:14826839-14827099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):41, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr6:16410694-16410969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):188, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:16765901-16765619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):123, 72

               
               
               Conread position:1-268
               
               
               Cow position:chr6:17865031-17865313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr6:18803419-18803136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:19103268-19102984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):123, 175

               
               
               Conread position:1-268
               
               
               Cow position:chr6:19570291-19570012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:20451598-20451880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):123, 32

               
               
               Conread position:1-268
               
               
               Cow position:chr6:22507243-22507519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):112, 40

               
               
               Conread position:1-268
               
               
               Cow position:chr6:22737066-22736783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:23567968-23567685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):119, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:24075063-24074793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):110, 40

               
               
               Conread position:1-268
               
               
               Cow position:chr6:24242926-24243202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:202
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):119, 35

               
               
               Conread position:1-268
               
               
               Cow position:chr6:24757858-24757575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:25218420-25218702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr6:25363191-25363474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:25374468-25374185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:25790098-25789814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr6:26412875-26413155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):123, 17

               
               
               Conread position:1-268
               
               
               Cow position:chr6:26667385-26667101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):74, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr6:27526365-27526083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:27887562-27887830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:194
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):123, 15

               
               
               Conread position:1-268
               
               
               Cow position:chr6:28065629-28065910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):123, 35

               
               
               Conread position:1-268
               
               
               Cow position:chr6:28112198-28111915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):129, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr6:28322681-28322406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:28791318-28791606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):112, 260

               
               
               Conread position:1-268
               
               
               Cow position:chr6:33451461-33451740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:208
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:33489594-33489312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:34115514-34115789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):126, 53

               
               
               Conread position:1-268
               
               
               Cow position:chr6:36531915-36532197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:36901650-36901933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:38872888-38872607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:208
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:39088262-39088545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):124, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr6:39137131-39137398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):191, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:39330892-39330609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:39998841-39998558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:40031684-40031967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr6:40251163-40250881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 52

               
               
               Conread position:1-268
               
               
               Cow position:chr6:40975805-40976086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):112, 60

               
               
               Conread position:1-268
               
               
               Cow position:chr6:41192987-41193273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):34, 21

               
               
               Conread position:1-268
               
               
               Cow position:chr6:41876561-41876278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr6:42481521-42481804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:43394174-43394442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):123, 66

               
               
               Conread position:1-268
               
               
               Cow position:chr6:44146311-44146026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:44598411-44598128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:45723485-45723201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):123, 175

               
               
               Conread position:1-268
               
               
               Cow position:chr6:46584774-46585057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):32, 38

               
               
               Conread position:1-268
               
               
               Cow position:chr6:46607867-46607586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):123, 95

               
               
               Conread position:1-268
               
               
               Cow position:chr6:46633750-46634036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr6:47039571-47039300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:49411186-49410911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):189, 120

               
               
               Conread position:1-268
               
               
               Cow position:chr6:49444756-49445041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:212
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):41, 52

               
               
               Conread position:1-268
               
               
               Cow position:chr6:49707108-49706825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:49794598-49794881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:51718195-51718478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:51733721-51734003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr6:51869577-51869858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:52697256-52697539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:53271294-53271577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:53345287-53345569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:213
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:53739931-53740214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:54218158-54218445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:54886975-54886692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:55388377-55388659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:57308861-57309144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr6:58940730-58940449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):126, 16

               
               
               Conread position:1-268
               
               
               Cow position:chr6:60876935-60877218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):110, 174

               
               
               Conread position:1-268
               
               
               Cow position:chr6:61549087-61548804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:63040696-63040412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):34, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr6:64720787-64721069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):110, 170

               
               
               Conread position:1-268
               
               
               Cow position:chr6:65844695-65844979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):123, 175

               
               
               Conread position:1-268
               
               
               Cow position:chr6:65909965-65910248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):83, 75

               
               
               Conread position:1-268
               
               
               Cow position:chr6:65921115-65920836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):187, 122

               
               
               Conread position:1-268
               
               
               Cow position:chr6:65930860-65931144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):101, 156

               
               
               Conread position:1-268
               
               
               Cow position:chr6:67214235-67214515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:207
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):189, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr6:67553872-67554153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):123, 84

               
               
               Conread position:1-269
               
               
               Cow position:chr6:47917-47631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):62, 37

               
               
               Conread position:1-269
               
               
               Cow position:chr6:327723-327439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):124, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr6:1887159-1886873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):32, 109

               
               
               Conread position:1-269
               
               
               Cow position:chr6:2607104-2607387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr6:13307758-13307483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr6:13741188-13741471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr6:27477492-27477777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr6:33460582-33460862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr6:33884443-33884159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr6:37761880-37762163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):123, 38

               
               
               Conread position:1-269
               
               
               Cow position:chr6:40358238-40357953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-269
               
               
               Cow position:chr6:47540014-47540300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 107

               
               
               Conread position:1-269
               
               
               Cow position:chr6:50120293-50120012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):123, 18

               
               
               Conread position:1-269
               
               
               Cow position:chr6:54865703-54865421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr6:55040727-55040443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:213
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr6:67403728-67403444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-270
               
               
               Cow position:chr6:2012514-2012794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:210
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):123, 35

               
               
               Conread position:1-270
               
               
               Cow position:chr6:6068198-6067914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 274

               
               
               Conread position:1-270
               
               
               Cow position:chr6:7801870-7801590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):197, 114

               
               
               Conread position:1-270
               
               
               Cow position:chr6:10332618-10332331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-270
               
               
               Cow position:chr6:48872716-48872432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:1-270
               
               
               Cow position:chr6:50983673-50983958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-271
               
               
               Cow position:chr6:50114338-50114619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):121, 18

               
               
               Conread position:1-275
               
               
               Cow position:chr6:62486857-62486567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):123, 34

               
               
               Conread position:1-277
               
               
               Cow position:chr6:8210091-8209803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-277
               
               
               Cow position:chr6:15182378-15182670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:214
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-277
               
               
               Cow position:chr6:56501803-56502095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-278
               
               
               Cow position:chr6:68048741-68049033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-283
               
               
               Cow position:chr6:2894720-2895015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-284
               
               
               Cow position:chr6:11638248-11637953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):189, 256

               
               
               Conread position:1-284
               
               
               Cow position:chr6:21541564-21541869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-284
               
               
               Cow position:chr6:42267356-42267656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-284
               
               
               Cow position:chr6:51674405-51674698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):188, 114

               
               
               Conread position:1-289
               
               
               Cow position:chr6:643103-642796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:226
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-292
               
               
               Cow position:chr6:25783796-25784105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):59, 32

               
               
               Conread position:1-296
               
               
               Cow position:chr6:9322632-9322939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):107, 73

               
               
               Conread position:1-297
               
               
               Cow position:chr6:14950020-14949710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-300
               
               
               Cow position:chr6:53933357-53933048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):124, 106

               
               
               Conread position:1-301
               
               
               Cow position:chr6:539775-540086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 206

               
               
               Conread position:1-301
               
               
               Cow position:chr6:67950421-67950736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 113

               
               
               Conread position:1-302
               
               
               Cow position:chr6:17344835-17345157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 62

               
               
               Conread position:1-302
               
               
               Cow position:chr6:47988554-47988868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 18

               
               
               Conread position:1-303
               
               
               Cow position:chr6:19044830-19045143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-303
               
               
               Cow position:chr6:42617117-42617435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):52, 37

               
               
               Conread position:1-305
               
               
               Cow position:chr6:55141194-55140870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):32, 39

               
               
               Conread position:1-306
               
               
               Cow position:chr6:16699752-16700073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):43, 85

               
               
               Conread position:1-306
               
               
               Cow position:chr6:47977571-47977890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):121, 291

               
               
               Conread position:1-306
               
               
               Cow position:chr6:50527142-50527469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):122, 321

               
               
               Conread position:2-164
               
               
               Cow position:chr6:223858-223694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:2-257
               
               
               Cow position:chr6:35873094-35872825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-258
               
               
               Cow position:chr6:21396578-21396306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:204
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):51, 106

               
               
               Conread position:2-268
               
               
               Cow position:chr6:15275600-15275318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-268
               
               
               Cow position:chr6:56441439-56441157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-269
               
               
               Cow position:chr6:65862177-65862460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:2-281
               
               
               Cow position:chr6:4903155-4902864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):122, 32

               
               
               Conread position:2-284
               
               
               Cow position:chr6:27240472-27240189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:216
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-305
               
               
               Cow position:chr6:33509077-33509384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):122, 36

               
               
               Conread position:3-265
               
               
               Cow position:chr6:45666297-45666020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):121, 25

               
               
               Conread position:3-268
               
               
               Cow position:chr6:706636-706917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-268
               
               
               Cow position:chr6:22017537-22017255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):132, 25

               
               
               Conread position:3-268
               
               
               Cow position:chr6:40550059-40549778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-269
               
               
               Cow position:chr6:17050012-17050294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):33, 25

               
               
               Conread position:3-269
               
               
               Cow position:chr6:40814003-40814286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:3-281
               
               
               Cow position:chr6:15938352-15938079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 104

               
               
               Conread position:3-281
               
               
               Cow position:chr6:42518461-42518755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):127, 275

               
               
               Conread position:3-281
               
               
               Cow position:chr6:46283465-46283177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):33, 105

               
               
               Conread position:4-260
               
               
               Cow position:chr6:21832018-21831745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):64, 104

               
               
               Conread position:4-267
               
               
               Cow position:chr6:42931601-42931326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):120, 41

               
               
               Conread position:4-268
               
               
               Cow position:chr6:7175007-7174736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:4-268
               
               
               Cow position:chr6:46666600-46666880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):120, 103

               
               
               Conread position:5-262
               
               
               Cow position:chr6:7104594-7104320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):33, 104

               
               
               Conread position:6-274
               
               
               Cow position:chr6:60456322-60456609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):27, 62

               
               
               Conread position:7-186
               
               
               Cow position:chr6:33921757-33921576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):116, 100

               
               
               Conread position:7-189
               
               
               Cow position:chr6:22225355-22225169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):73, 101

               
               
               Conread position:7-268
               
               
               Cow position:chr6:25822502-25822230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):31, 20

               
               
               Conread position:7-306
               
               
               Cow position:chr6:34075522-34075841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:228
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):116, 100

               
               
               Conread position:8-268
               
               
               Cow position:chr6:19719218-19719493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):115, 20

               
               
               Conread position:8-303
               
               
               Cow position:chr6:49733432-49733744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):116, 100

               
               
               Conread position:9-268
               
               
               Cow position:chr6:34494316-34494591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):111, 98

               
               
               Conread position:10-265
               
               
               Cow position:chr6:7175624-7175348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):74, 9

               
               
               Conread position:10-269
               
               
               Cow position:chr6:9733332-9733057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):114, 97

               
               
               Conread position:10-303
               
               
               Cow position:chr6:16103748-16103441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 22

               
               
               Conread position:11-258
               
               
               Cow position:chr6:44098588-44098851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):113, 96

               
               
               Conread position:11-269
               
               
               Cow position:chr6:33852287-33852009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):12, 28

               
               
               Conread position:12-287
               
               
               Cow position:chr6:52478942-52478646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:218
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):24, 16

               
               
               Conread position:12-305
               
               
               Cow position:chr6:16737522-16737833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):112, 102

               
               
               Conread position:15-270
               
               
               Cow position:chr6:66873835-66874103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):109, 66

               
               
               Conread position:15-274
               
               
               Cow position:chr6:14839521-14839247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):109, 92

               
               
               Conread position:16-197
               
               
               Cow position:chr6:20410682-20410506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):91, 71

               
               
               Conread position:16-211
               
               
               Cow position:chr6:38896367-38896163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):108, 91

               
               
               Conread position:16-265
               
               
               Cow position:chr6:42106540-42106281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):108, 80

               
               
               Conread position:16-303
               
               
               Cow position:chr6:55143621-55143315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:223
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):16, 93

               
               
               Conread position:16-303
               
               
               Cow position:chr6:65904955-65905253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:218
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):49, 17

               
               
               Conread position:18-264
               
               
               Cow position:chr6:51296693-51296450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):106, 96

               
               
               Conread position:18-268
               
               
               Cow position:chr6:17556888-17557148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):172, 39

               
               
               Conread position:23-291
               
               
               Cow position:chr6:28503848-28504139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):17, 85

               
               
               Conread position:24-268
               
               
               Cow position:chr6:15310351-15310090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):18, 84

               
               
               Conread position:24-269
               
               
               Cow position:chr6:5958498-5958242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):106, 64

               
               
               Conread position:24-283
               
               
               Cow position:chr6:18142644-18142909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):100, 82

               
               
               Conread position:25-268
               
               
               Cow position:chr6:19819108-19819367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):105, 83

               
               
               Conread position:26-262
               
               
               Cow position:chr6:62015161-62015412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):98, 81

               
               
               Conread position:27-268
               
               
               Cow position:chr6:5851908-5851657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):8, 81

               
               
               Conread position:28-243
               
               
               Cow position:chr6:1784249-1784017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):8, 80

               
               
               Conread position:28-265
               
               
               Cow position:chr6:67544775-67544522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):96, 79

               
               
               Conread position:28-268
               
               
               Cow position:chr6:28558953-28559188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):8, 83

               
               
               Conread position:28-268
               
               
               Cow position:chr6:65711344-65711600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):96, 79

               
               
               Conread position:28-277
               
               
               Cow position:chr6:61136683-61136951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):56, 81

               
               
               Conread position:29-265
               
               
               Cow position:chr6:60673067-60673318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):14, 79

               
               
               Conread position:30-268
               
               
               Cow position:chr6:20689803-20689553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):94, 77

               
               
               Conread position:35-264
               
               
               Cow position:chr6:53178161-53178409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:35-264
               
               
               Cow position:chr6:53918204-53917959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):95, 72

               
               
               Conread position:35-284
               
               
               Cow position:chr6:64431471-64431731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):89, 72

               
               
               Conread position:36-268
               
               
               Cow position:chr6:46246570-46246332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):93, 72

               
               
               Conread position:36-269
               
               
               Cow position:chr6:38233530-38233758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):88, 40

               
               
               Conread position:36-287
               
               
               Cow position:chr6:60485214-60485470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):88, 27

               
               
               Conread position:37-284
               
               
               Cow position:chr6:3979136-3978871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):25, 71

               
               
               Conread position:41-186
               
               
               Cow position:chr6:36892392-36892539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):83, 66

               
               
               Conread position:41-261
               
               
               Cow position:chr6:36928181-36928419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):83, 67

               
               
               Conread position:41-264
               
               
               Cow position:chr6:20552573-20552334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):83, 66

               
               
               Conread position:43-268
               
               
               Cow position:chr6:1770661-1770422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):80, 41

               
               
               Conread position:43-268
               
               
               Cow position:chr6:9226200-9226441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):79, 64

               
               
               Conread position:43-268
               
               
               Cow position:chr6:53542787-53542546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):81, 71

               
               
               Conread position:45-268
               
               
               Cow position:chr6:22877616-22877381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:46-269
               
               
               Cow position:chr6:23987204-23986962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):78, 61

               
               
               Conread position:47-270
               
               
               Cow position:chr6:7253902-7253663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):77, 60

               
               
               Conread position:49-265
               
               
               Cow position:chr6:58439530-58439751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:169
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:50-268
               
               
               Cow position:chr6:50571857-50572091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):74, 57

               
               
               Conread position:51-268
               
               
               Cow position:chr6:32916377-32916147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):73, 6

               
               
               Conread position:51-284
               
               
               Cow position:chr6:13366839-13367087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):68, 59

               
               
               Conread position:54-260
               
               
               Cow position:chr6:7131304-7131106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):70, 53

               
               
               Conread position:57-268
               
               
               Cow position:chr6:18049481-18049252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:57-268
               
               
               Cow position:chr6:19170830-19171058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:58-265
               
               
               Cow position:chr6:48169492-48169715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):66, 49

               
               
               Conread position:59-249
               
               
               Cow position:chr6:67304329-67304535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):65, 48

               
               
               Conread position:61-265
               
               
               Cow position:chr6:5096000-5095784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):63, 46

               
               
               Conread position:67-265
               
               
               Cow position:chr6:66566013-66566226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):60, 47

               
               
               Conread position:68-265
               
               
               Cow position:chr6:53140837-53140624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):56, 39

               
               
               Conread position:68-276
               
               
               Cow position:chr6:1174944-1174720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):56, 32

               
               
               Conread position:71-265
               
               
               Cow position:chr6:20245644-20245854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):53, 36

               
               
               Conread position:78-264
               
               
               Cow position:chr6:19695109-19695311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):45, 29

               
               
               Conread position:100-293
               
               
               Cow position:chr6:43788928-43788726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):23, 180

               
               
               Conread position:129-284
               
               
               Cow position:chr6:24652560-24652391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):60, 167

               
               
               Conread position:1-118
               
               
               Cow position:chr7:15400182-15400300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:1-168
               
               
               Cow position:chr7:51872216-51872049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-171
               
               
               Cow position:chr7:27604204-27604032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:1-179
               
               
               Cow position:chr7:46823163-46823341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-184
               
               
               Cow position:chr7:27713314-27713497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-184
               
               
               Cow position:chr7:44697373-44697559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):35, 99

               
               
               Conread position:1-184
               
               
               Cow position:chr7:46148370-46148555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):89, 106

               
               
               Conread position:1-186
               
               
               Cow position:chr7:11460406-11460221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-186
               
               
               Cow position:chr7:20168077-20168266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1-186
               
               
               Cow position:chr7:30769255-30769075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1-186
               
               
               Cow position:chr7:35061482-35061669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-186
               
               
               Cow position:chr7:42223484-42223297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:150
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-186
               
               
               Cow position:chr7:58953126-58953316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):35, 29

               
               
               Conread position:1-187
               
               
               Cow position:chr7:29301259-29301071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-188
               
               
               Cow position:chr7:2245030-2244845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):123, 26

               
               
               Conread position:1-188
               
               
               Cow position:chr7:4132629-4132822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:1-188
               
               
               Cow position:chr7:4452094-4452283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-188
               
               
               Cow position:chr7:12384637-12384825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):89, 107

               
               
               Conread position:1-188
               
               
               Cow position:chr7:24873560-24873370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):63, 110

               
               
               Conread position:1-188
               
               
               Cow position:chr7:29121273-29121462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:152
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-188
               
               
               Cow position:chr7:30022895-30022709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 60

               
               
               Conread position:1-188
               
               
               Cow position:chr7:30307225-30307411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):124, 95

               
               
               Conread position:1-188
               
               
               Cow position:chr7:35892907-35893098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):43, 107

               
               
               Conread position:1-188
               
               
               Cow position:chr7:38081660-38081841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):123, 34

               
               
               Conread position:1-188
               
               
               Cow position:chr7:39100511-39100316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):79, 73

               
               
               Conread position:1-188
               
               
               Cow position:chr7:39152545-39152734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):79, 73

               
               
               Conread position:1-188
               
               
               Cow position:chr7:48666919-48667107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):123, 88

               
               
               Conread position:1-189
               
               
               Cow position:chr7:58334830-58334654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:1-189
               
               
               Cow position:chr7:65440695-65440884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):128, 14

               
               
               Conread position:1-196
               
               
               Cow position:chr7:33804246-33804439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):123, 38

               
               
               Conread position:1-196
               
               
               Cow position:chr7:45658862-45658677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:1-204
               
               
               Cow position:chr7:50066793-50066579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):40, 113

               
               
               Conread position:1-211
               
               
               Cow position:chr7:14135083-14134865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):119, 175

               
               
               Conread position:1-211
               
               
               Cow position:chr7:32712976-32712757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):123, 156

               
               
               Conread position:1-211
               
               
               Cow position:chr7:64573616-64573398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):75, 113

               
               
               Conread position:1-240
               
               
               Cow position:chr7:63947389-63947136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):123, 96

               
               
               Conread position:1-250
               
               
               Cow position:chr7:42334856-42335127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-254
               
               
               Cow position:chr7:64103901-64103633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:201
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):120, 54

               
               
               Conread position:1-255
               
               
               Cow position:chr7:27981541-27981265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):89, 14

               
               
               Conread position:1-255
               
               
               Cow position:chr7:28427518-28427794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):89, 14

               
               
               Conread position:1-255
               
               
               Cow position:chr7:46749703-46749974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):89, 107

               
               
               Conread position:1-256
               
               
               Cow position:chr7:37454780-37455053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:1-257
               
               
               Cow position:chr7:26737825-26737553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-257
               
               
               Cow position:chr7:45927658-45927387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):115, 106

               
               
               Conread position:1-258
               
               
               Cow position:chr7:8868322-8868587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:1-258
               
               
               Cow position:chr7:9928927-9928654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:208
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):123, 29

               
               
               Conread position:1-258
               
               
               Cow position:chr7:15258604-15258861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):128, 106

               
               
               Conread position:1-258
               
               
               Cow position:chr7:32283408-32283681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 106

               
               
               Conread position:1-258
               
               
               Cow position:chr7:35111065-35111340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):19, 116

               
               
               Conread position:1-258
               
               
               Cow position:chr7:50371243-50371517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-260
               
               
               Cow position:chr7:27456085-27455812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):119, 106

               
               
               Conread position:1-260
               
               
               Cow position:chr7:39020602-39020327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-261
               
               
               Cow position:chr7:39094602-39094327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-262
               
               
               Cow position:chr7:48860016-48859733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):123, 99

               
               
               Conread position:1-263
               
               
               Cow position:chr7:29509465-29509742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:209
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-263
               
               
               Cow position:chr7:31171455-31171177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-263
               
               
               Cow position:chr7:48243169-48243449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-263
               
               
               Cow position:chr7:59437966-59438244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):122, 73

               
               
               Conread position:1-263
               
               
               Cow position:chr7:65818996-65818722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):41, 27

               
               
               Conread position:1-264
               
               
               Cow position:chr7:10122220-10122482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):196, 28

               
               
               Conread position:1-264
               
               
               Cow position:chr7:18872708-18872984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):131, 108

               
               
               Conread position:1-264
               
               
               Cow position:chr7:60945701-60945977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):121, 9

               
               
               Conread position:1-264
               
               
               Cow position:chr7:61824349-61824082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):207, 97

               
               
               Conread position:1-265
               
               
               Cow position:chr7:11959-11680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr7:899524-899241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 175

               
               
               Conread position:1-265
               
               
               Cow position:chr7:1350838-1350559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):123, 29

               
               
               Conread position:1-265
               
               
               Cow position:chr7:9079873-9080147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):190, 107

               
               
               Conread position:1-265
               
               
               Cow position:chr7:12994650-12994937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):32, 46

               
               
               Conread position:1-265
               
               
               Cow position:chr7:13962560-13962834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):70, 89

               
               
               Conread position:1-265
               
               
               Cow position:chr7:14005379-14005647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):185, 95

               
               
               Conread position:1-265
               
               
               Cow position:chr7:23477806-23477532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 18

               
               
               Conread position:1-265
               
               
               Cow position:chr7:27515874-27515587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):114, 21

               
               
               Conread position:1-265
               
               
               Cow position:chr7:28643001-28643277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):129, 75

               
               
               Conread position:1-265
               
               
               Cow position:chr7:34425095-34425375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr7:36717970-36717689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:209
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr7:37372539-37372819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:1-265
               
               
               Cow position:chr7:39163886-39164162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):79, 73

               
               
               Conread position:1-265
               
               
               Cow position:chr7:40650903-40651184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):14, 171

               
               
               Conread position:1-265
               
               
               Cow position:chr7:42301710-42301430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr7:43485060-43484789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):187, 73

               
               
               Conread position:1-265
               
               
               Cow position:chr7:43489972-43490252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr7:53268686-53268964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr7:58302453-58302173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-265
               
               
               Cow position:chr7:58614301-58614567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr7:58867072-58867350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):123, 76

               
               
               Conread position:1-265
               
               
               Cow position:chr7:58966766-58967047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):28, 116

               
               
               Conread position:1-265
               
               
               Cow position:chr7:66895045-66894768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:210
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):123, 41

               
               
               Conread position:1-266
               
               
               Cow position:chr7:19069071-19068792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):123, 35

               
               
               Conread position:1-266
               
               
               Cow position:chr7:25103706-25103994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):111, 284

               
               
               Conread position:1-266
               
               
               Cow position:chr7:27552205-27551926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):123, 35

               
               
               Conread position:1-266
               
               
               Cow position:chr7:53074721-53074997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-266
               
               
               Cow position:chr7:59688025-59688310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr7:249992-249717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):124, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr7:759126-758843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):82, 75

               
               
               Conread position:1-268
               
               
               Cow position:chr7:1366963-1366680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr7:1375186-1375470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):44, 108

               
               
               Conread position:1-268
               
               
               Cow position:chr7:1392268-1392551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr7:6566190-6566473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr7:7278288-7278570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr7:8140351-8140068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):82, 75

               
               
               Conread position:1-268
               
               
               Cow position:chr7:8338636-8338919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr7:8877377-8877652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr7:10427694-10427411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr7:10998498-10998781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr7:11440099-11439816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr7:13530197-13529914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr7:13645869-13645579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr7:14428734-14429018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr7:14539360-14539643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr7:14542557-14542276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):126, 38

               
               
               Conread position:1-268
               
               
               Cow position:chr7:18639973-18639690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr7:18873591-18873875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):101, 178

               
               
               Conread position:1-268
               
               
               Cow position:chr7:19267876-19267594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):32, 38

               
               
               Conread position:1-268
               
               
               Cow position:chr7:19798439-19798157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 92

               
               
               Conread position:1-268
               
               
               Cow position:chr7:19956885-19956602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr7:20770335-20770057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):123, 67

               
               
               Conread position:1-268
               
               
               Cow position:chr7:20879611-20879894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 278

               
               
               Conread position:1-268
               
               
               Cow position:chr7:21123939-21123667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):187, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr7:21231290-21231007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr7:21315605-21315884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):35, 53

               
               
               Conread position:1-268
               
               
               Cow position:chr7:22357996-22357713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr7:23646094-23646378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):75, 112

               
               
               Conread position:1-268
               
               
               Cow position:chr7:23761459-23761743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):61, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr7:24423370-24423649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr7:24778618-24778336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr7:24804787-24804506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):112, 46

               
               
               Conread position:1-268
               
               
               Cow position:chr7:24827013-24826730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr7:24989123-24989405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):129, 60

               
               
               Conread position:1-268
               
               
               Cow position:chr7:24990776-24991058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):123, 42

               
               
               Conread position:1-268
               
               
               Cow position:chr7:25022423-25022141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):129, 60

               
               
               Conread position:1-268
               
               
               Cow position:chr7:26455524-26455241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):33, 156

               
               
               Conread position:1-268
               
               
               Cow position:chr7:27394855-27395137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr7:27573546-27573830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):129, 175

               
               
               Conread position:1-268
               
               
               Cow position:chr7:29843842-29844128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr7:31349519-31349789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):123, 97

               
               
               Conread position:1-268
               
               
               Cow position:chr7:32901500-32901787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):128, 113

               
               
               Conread position:1-268
               
               
               Cow position:chr7:33068808-33068525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 108

               
               
               Conread position:1-268
               
               
               Cow position:chr7:33280719-33280437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr7:34428053-34428336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr7:34489638-34489921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr7:34819791-34820072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):123, 66

               
               
               Conread position:1-268
               
               
               Cow position:chr7:35778945-35779225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 73

               
               
               Conread position:1-268
               
               
               Cow position:chr7:36080343-36080061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):123, 64

               
               
               Conread position:1-268
               
               
               Cow position:chr7:36247602-36247886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr7:36507747-36508023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):123, 25

               
               
               Conread position:1-268
               
               
               Cow position:chr7:37166575-37166858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr7:37190397-37190680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr7:37516462-37516745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr7:38400576-38400860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr7:39530333-39530049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):34, 26

               
               
               Conread position:1-268
               
               
               Cow position:chr7:39572165-39571881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 157

               
               
               Conread position:1-268
               
               
               Cow position:chr7:39903602-39903879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr7:39939235-39939514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):189, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr7:40203722-40204005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr7:41231917-41231642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):123, 39

               
               
               Conread position:1-268
               
               
               Cow position:chr7:41405027-41404736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):45, 117

               
               
               Conread position:1-268
               
               
               Cow position:chr7:41771434-41771162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):123, 65

               
               
               Conread position:1-268
               
               
               Cow position:chr7:42296576-42296294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-268
               
               
               Cow position:chr7:42431316-42431600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 37

               
               
               Conread position:1-268
               
               
               Cow position:chr7:42593816-42593539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr7:45765595-45765312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr7:46195642-46195925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr7:46897198-46897482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):123, 175

               
               
               Conread position:1-268
               
               
               Cow position:chr7:48437508-48437241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):110, 174

               
               
               Conread position:1-268
               
               
               Cow position:chr7:49467498-49467210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr7:49794155-49793872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr7:51019289-51019571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr7:52167520-52167811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr7:53361888-53361601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):123, 52

               
               
               Conread position:1-268
               
               
               Cow position:chr7:53698423-53698141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr7:53772814-53772539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):113, 52

               
               
               Conread position:1-268
               
               
               Cow position:chr7:53988537-53988836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr7:54478304-54478020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):123, 175

               
               
               Conread position:1-268
               
               
               Cow position:chr7:56669198-56668931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):211, 99

               
               
               Conread position:1-268
               
               
               Cow position:chr7:56887281-56887004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):97, 222

               
               
               Conread position:1-268
               
               
               Cow position:chr7:57911100-57911383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr7:58905041-58904758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr7:59660241-59660523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr7:60726722-60726439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):32, 38

               
               
               Conread position:1-268
               
               
               Cow position:chr7:62793276-62793558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr7:62900038-62900322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr7:64238329-64238046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr7:64353704-64353986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr7:64391729-64391456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:199
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr7:65814856-65815138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):129, 35

               
               
               Conread position:1-268
               
               
               Cow position:chr7:66153510-66153226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr7:66908974-66909253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:202
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr7:67803464-67803743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-269
               
               
               Cow position:chr7:194184-193900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1-269
               
               
               Cow position:chr7:205252-205532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:211
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):33, 56

               
               
               Conread position:1-269
               
               
               Cow position:chr7:3027433-3027158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):187, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr7:3130550-3130832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):190, 0

               
               
               Conread position:1-269
               
               
               Cow position:chr7:13593282-13593551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr7:15566267-15566550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):129, 26

               
               
               Conread position:1-269
               
               
               Cow position:chr7:19463070-19462786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr7:21326550-21326822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):188, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr7:21423643-21423359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr7:23229015-23229301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr7:39795590-39795874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-269
               
               
               Cow position:chr7:46411690-46411974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):123, 73

               
               
               Conread position:1-269
               
               
               Cow position:chr7:52383491-52383210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-269
               
               
               Cow position:chr7:53992200-53992477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:210
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):189, 14

               
               
               Conread position:1-269
               
               
               Cow position:chr7:55042812-55043093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr7:55534188-55533904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1-269
               
               
               Cow position:chr7:63022604-63022888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-270
               
               
               Cow position:chr7:14522947-14523227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):122, 62

               
               
               Conread position:1-270
               
               
               Cow position:chr7:65869771-65869484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-270
               
               
               Cow position:chr7:68776993-68776706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):119, 106

               
               
               Conread position:1-273
               
               
               Cow position:chr7:22653048-22652774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):189, 25

               
               
               Conread position:1-276
               
               
               Cow position:chr7:51674392-51674099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):19, 96

               
               
               Conread position:1-276
               
               
               Cow position:chr7:63298770-63299061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):115, 106

               
               
               Conread position:1-277
               
               
               Cow position:chr7:9432-9722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-277
               
               
               Cow position:chr7:6816706-6816411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):32, 38

               
               
               Conread position:1-277
               
               
               Cow position:chr7:39325261-39325531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):265, 32

               
               
               Conread position:1-281
               
               
               Cow position:chr7:19414979-19414685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:1-283
               
               
               Cow position:chr7:40404997-40405292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:223
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):79, 71

               
               
               Conread position:1-283
               
               
               Cow position:chr7:53986491-53986197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-284
               
               
               Cow position:chr7:8624751-8625054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):60, 37

               
               
               Conread position:1-284
               
               
               Cow position:chr7:11419657-11419358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:218
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-284
               
               
               Cow position:chr7:19923964-19923667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-284
               
               
               Cow position:chr7:28163146-28163444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:219
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-284
               
               
               Cow position:chr7:35652584-35652285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 107

               
               
               Conread position:1-284
               
               
               Cow position:chr7:40318432-40318727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):123, 267

               
               
               Conread position:1-284
               
               
               Cow position:chr7:44621692-44621393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):113, 27

               
               
               Conread position:1-284
               
               
               Cow position:chr7:53070852-53071151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-284
               
               
               Cow position:chr7:63085060-63085356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:219
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):123, 85

               
               
               Conread position:1-286
               
               
               Cow position:chr7:23090801-23091105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):81, 73

               
               
               Conread position:1-292
               
               
               Cow position:chr7:12408763-12408459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):123, 35

               
               
               Conread position:1-295
               
               
               Cow position:chr7:26771365-26771669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 106

               
               
               Conread position:1-297
               
               
               Cow position:chr7:43234963-43234652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):58, 10

               
               
               Conread position:1-298
               
               
               Cow position:chr7:19096569-19096257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-298
               
               
               Cow position:chr7:43907705-43908013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):122, 95

               
               
               Conread position:1-299
               
               
               Cow position:chr7:40264192-40263890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-300
               
               
               Cow position:chr7:61551391-61551706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-303
               
               
               Cow position:chr7:24213327-24213664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:246
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:1-303
               
               
               Cow position:chr7:27557929-27557612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:236
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-303
               
               
               Cow position:chr7:33719477-33719794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):123, 22

               
               
               Conread position:1-303
               
               
               Cow position:chr7:41727389-41727700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):166, 32

               
               
               Conread position:1-303
               
               
               Cow position:chr7:47045951-47046254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:221
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):183, 106

               
               
               Conread position:1-306
               
               
               Cow position:chr7:52537047-52536745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):119, 97

               
               
               Conread position:2-258
               
               
               Cow position:chr7:1033020-1032749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:2-268
               
               
               Cow position:chr7:18256205-18255924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):121, 36

               
               
               Conread position:2-268
               
               
               Cow position:chr7:30664758-30665037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):111, 153

               
               
               Conread position:2-268
               
               
               Cow position:chr7:39147289-39147572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):64, 73

               
               
               Conread position:2-268
               
               
               Cow position:chr7:57580378-57580097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):137, 74

               
               
               Conread position:2-268
               
               
               Cow position:chr7:59775039-59775319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:211
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):31, 40

               
               
               Conread position:2-269
               
               
               Cow position:chr7:62732715-62732963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:2-302
               
               
               Cow position:chr7:25195009-25195310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):122, 36

               
               
               Conread position:3-181
               
               
               Cow position:chr7:29474132-29474314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):32, 106

               
               
               Conread position:3-186
               
               
               Cow position:chr7:49844547-49844354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:3-196
               
               
               Cow position:chr7:24932906-24932705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):32, 152

               
               
               Conread position:3-211
               
               
               Cow position:chr7:7477035-7476818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-265
               
               
               Cow position:chr7:15654578-15654302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):121, 65

               
               
               Conread position:3-269
               
               
               Cow position:chr7:45157628-45157909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):120, 104

               
               
               Conread position:3-269
               
               
               Cow position:chr7:65121852-65122118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-270
               
               
               Cow position:chr7:47771485-47771197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-276
               
               
               Cow position:chr7:59667533-59667824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):122, 104

               
               
               Conread position:3-284
               
               
               Cow position:chr7:25414892-25415190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):16, 105

               
               
               Conread position:3-303
               
               
               Cow position:chr7:48407365-48407047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 95

               
               
               Conread position:4-268
               
               
               Cow position:chr7:62284227-62283947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):120, 103

               
               
               Conread position:5-268
               
               
               Cow position:chr7:11783922-11783643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:204
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):119, 14

               
               
               Conread position:6-186
               
               
               Cow position:chr7:16158570-16158390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):30, 24

               
               
               Conread position:6-265
               
               
               Cow position:chr7:11870335-11870057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:209
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):118, 101

               
               
               Conread position:6-268
               
               
               Cow position:chr7:8785464-8785742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):118, 102

               
               
               Conread position:7-256
               
               
               Cow position:chr7:23257359-23257088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):116, 91

               
               
               Conread position:7-258
               
               
               Cow position:chr7:23465237-23464976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):183, 100

               
               
               Conread position:7-269
               
               
               Cow position:chr7:54580411-54580689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):117, 100

               
               
               Conread position:7-269
               
               
               Cow position:chr7:56098107-56098390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):117, 100

               
               
               Conread position:7-297
               
               
               Cow position:chr7:25024003-25023698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):116, 103

               
               
               Conread position:7-303
               
               
               Cow position:chr7:32285917-32286219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):114, 143

               
               
               Conread position:7-303
               
               
               Cow position:chr7:51643704-51644019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):78, 144

               
               
               Conread position:8-270
               
               
               Cow position:chr7:43833658-43833937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):116, 161

               
               
               Conread position:9-264
               
               
               Cow position:chr7:1721466-1721194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):115, 98

               
               
               Conread position:9-268
               
               
               Cow position:chr7:62602697-62602972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):27, 99

               
               
               Conread position:10-268
               
               
               Cow position:chr7:442540-442267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):114, 97

               
               
               Conread position:11-262
               
               
               Cow position:chr7:41297149-41296882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):113, 57

               
               
               Conread position:15-264
               
               
               Cow position:chr7:34422793-34422531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):176, 92

               
               
               Conread position:15-276
               
               
               Cow position:chr7:52209617-52209340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):109, 34

               
               
               Conread position:15-284
               
               
               Cow position:chr7:64236779-64236495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):109, 92

               
               
               Conread position:16-263
               
               
               Cow position:chr7:20105515-20105249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):104, 17

               
               
               Conread position:16-284
               
               
               Cow position:chr7:17590977-17591269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):91, 141

               
               
               Conread position:16-298
               
               
               Cow position:chr7:10036837-10037132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):18, 99

               
               
               Conread position:18-268
               
               
               Cow position:chr7:52294638-52294910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):18, 53

               
               
               Conread position:18-269
               
               
               Cow position:chr7:15547348-15547613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):105, 89

               
               
               Conread position:18-269
               
               
               Cow position:chr7:60220613-60220880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):106, 89

               
               
               Conread position:19-284
               
               
               Cow position:chr7:44544557-44544275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):105, 8

               
               
               Conread position:21-263
               
               
               Cow position:chr7:66131594-66131835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):102, 29

               
               
               Conread position:21-268
               
               
               Cow position:chr7:11448059-11448322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):103, 86

               
               
               Conread position:21-268
               
               
               Cow position:chr7:23520013-23520276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):103, 86

               
               
               Conread position:21-268
               
               
               Cow position:chr7:34433764-34433504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):169, 17

               
               
               Conread position:22-211
               
               
               Cow position:chr7:61790842-61790645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):102, 85

               
               
               Conread position:22-265
               
               
               Cow position:chr7:20779651-20779910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):13, 86

               
               
               Conread position:22-268
               
               
               Cow position:chr7:32316415-32316675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:198
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):102, 85

               
               
               Conread position:22-305
               
               
               Cow position:chr7:28563867-28563570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):102, 85

               
               
               Conread position:23-268
               
               
               Cow position:chr7:43784139-43784404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):112, 85

               
               
               Conread position:28-265
               
               
               Cow position:chr7:14631895-14632149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:28-303
               
               
               Cow position:chr7:17783413-17783120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):96, 79

               
               
               Conread position:29-265
               
               
               Cow position:chr7:14766616-14766369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):51, 79

               
               
               Conread position:30-263
               
               
               Cow position:chr7:17816282-17816529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):94, 80

               
               
               Conread position:30-265
               
               
               Cow position:chr7:37568551-37568800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):94, 20

               
               
               Conread position:30-289
               
               
               Cow position:chr7:55085511-55085236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):94, 70

               
               
               Conread position:32-265
               
               
               Cow position:chr7:9146162-9146418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):48, 76

               
               
               Conread position:34-258
               
               
               Cow position:chr7:5241649-5241887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):90, 36

               
               
               Conread position:35-264
               
               
               Cow position:chr7:64229374-64229129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):89, 72

               
               
               Conread position:35-265
               
               
               Cow position:chr7:10760333-10760087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):89, 72

               
               
               Conread position:35-265
               
               
               Cow position:chr7:47697276-47697513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):150, 72

               
               
               Conread position:35-268
               
               
               Cow position:chr7:65225-65475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):89, 141

               
               
               Conread position:35-268
               
               
               Cow position:chr7:26632286-26632036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):80, 205

               
               
               Conread position:35-284
               
               
               Cow position:chr7:59691599-59691867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):16, 75

               
               
               Conread position:37-295
               
               
               Cow position:chr7:40311835-40311567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):87, 70

               
               
               Conread position:38-268
               
               
               Cow position:chr7:19182361-19182607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):91, 69

               
               
               Conread position:38-268
               
               
               Cow position:chr7:19912793-19912547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):85, 23

               
               
               Conread position:38-306
               
               
               Cow position:chr7:22624566-22624289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):91, 69

               
               
               Conread position:41-260
               
               
               Cow position:chr7:50289038-50288811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):147, 66

               
               
               Conread position:41-263
               
               
               Cow position:chr7:22345270-22345033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):83, 66

               
               
               Conread position:41-268
               
               
               Cow position:chr7:23206101-23205858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):82, 66

               
               
               Conread position:41-268
               
               
               Cow position:chr7:35300993-35300772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):82, 67

               
               
               Conread position:41-269
               
               
               Cow position:chr7:25512589-25512346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):83, 66

               
               
               Conread position:42-268
               
               
               Cow position:chr7:23447359-23447128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:45-188
               
               
               Cow position:chr7:40407421-40407567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):33, 63

               
               
               Conread position:45-268
               
               
               Cow position:chr7:46396277-46396517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:46-264
               
               
               Cow position:chr7:463456-463688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):78, 61

               
               
               Conread position:52-268
               
               
               Cow position:chr7:6057672-6057905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):72, 58

               
               
               Conread position:52-268
               
               
               Cow position:chr7:26895832-26896064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):72, 55

               
               
               Conread position:53-268
               
               
               Cow position:chr7:13493896-13494126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):74, 54

               
               
               Conread position:57-269
               
               
               Cow position:chr7:26783234-26783011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):68, 50

               
               
               Conread position:57-282
               
               
               Cow position:chr7:23664546-23664303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):67, 50

               
               
               Conread position:58-269
               
               
               Cow position:chr7:49647911-49648139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:59-265
               
               
               Cow position:chr7:1599228-1599007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):65, 49

               
               
               Conread position:61-268
               
               
               Cow position:chr7:47775425-47775644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):63, 45

               
               
               Conread position:67-268
               
               
               Cow position:chr7:46874706-46874922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:68-269
               
               
               Cow position:chr7:46117090-46116876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):56, 39

               
               
               Conread position:70-298
               
               
               Cow position:chr7:33299039-33298800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):53, 8

               
               
               Conread position:79-265
               
               
               Cow position:chr7:38901703-38901903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):45, 28

               
               
               Conread position:81-261
               
               
               Cow position:chr7:63749894-63749713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):44, 26

               
               
               Conread position:102-305
               
               
               Cow position:chr7:55316932-55316720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):22, 48

               
               
               Conread position:132-268
               
               
               Cow position:chr7:44454640-44454490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:1-151
               
               
               Cow position:chr8:1583387-1583537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-178
               
               
               Cow position:chr8:32132456-32132270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):32, 113

               
               
               Conread position:1-181
               
               
               Cow position:chr8:45130819-45130636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-184
               
               
               Cow position:chr8:58417134-58417325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:1-186
               
               
               Cow position:chr8:4797864-4798052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):60, 35

               
               
               Conread position:1-186
               
               
               Cow position:chr8:19718922-19718735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):123, 109

               
               
               Conread position:1-186
               
               
               Cow position:chr8:56728387-56728574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-187
               
               
               Cow position:chr8:41417746-41417931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-188
               
               
               Cow position:chr8:24372249-24372060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):123, 109

               
               
               Conread position:1-188
               
               
               Cow position:chr8:39321526-39321337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):119, 106

               
               
               Conread position:1-188
               
               
               Cow position:chr8:44559599-44559409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:1-188
               
               
               Cow position:chr8:46845082-46844893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-188
               
               
               Cow position:chr8:47751228-47751037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):45, 107

               
               
               Conread position:1-188
               
               
               Cow position:chr8:53252231-53252042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-189
               
               
               Cow position:chr8:6724929-6724739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):118, 106

               
               
               Conread position:1-189
               
               
               Cow position:chr8:36345067-36344877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):123, 109

               
               
               Conread position:1-189
               
               
               Cow position:chr8:39191994-39191798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):75, 180

               
               
               Conread position:1-196
               
               
               Cow position:chr8:644590-644405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:1-211
               
               
               Cow position:chr8:25672204-25672423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):110, 174

               
               
               Conread position:1-232
               
               
               Cow position:chr8:53450961-53451208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-244
               
               
               Cow position:chr8:55359790-55360051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):34, 79

               
               
               Conread position:1-249
               
               
               Cow position:chr8:18016985-18017248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:197
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):122, 107

               
               
               Conread position:1-253
               
               
               Cow position:chr8:53865258-53865532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):32, 38

               
               
               Conread position:1-255
               
               
               Cow position:chr8:24193449-24193718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):126, 106

               
               
               Conread position:1-255
               
               
               Cow position:chr8:59250194-59250460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:199
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):118, 106

               
               
               Conread position:1-257
               
               
               Cow position:chr8:812827-813098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-258
               
               
               Cow position:chr8:1252428-1252690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):187, 39

               
               
               Conread position:1-258
               
               
               Cow position:chr8:3332746-3332474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):82, 75

               
               
               Conread position:1-258
               
               
               Cow position:chr8:8016156-8015890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):181, 116

               
               
               Conread position:1-258
               
               
               Cow position:chr8:28230008-28229735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-258
               
               
               Cow position:chr8:34400373-34400644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-260
               
               
               Cow position:chr8:17315506-17315779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):187, 0

               
               
               Conread position:1-260
               
               
               Cow position:chr8:17489101-17488839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):122, 32

               
               
               Conread position:1-260
               
               
               Cow position:chr8:23111614-23111338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-260
               
               
               Cow position:chr8:33592275-33592550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):34, 27

               
               
               Conread position:1-260
               
               
               Cow position:chr8:35529587-35529862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-260
               
               
               Cow position:chr8:36332734-36332454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:1-260
               
               
               Cow position:chr8:53214842-53214568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-261
               
               
               Cow position:chr8:21212254-21212531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:202
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:1-261
               
               
               Cow position:chr8:24687016-24686740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:203
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-261
               
               
               Cow position:chr8:32967034-32967307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):32, 39

               
               
               Conread position:1-262
               
               
               Cow position:chr8:1589542-1589268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):23, 98

               
               
               Conread position:1-262
               
               
               Cow position:chr8:6530887-6531164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-262
               
               
               Cow position:chr8:8987501-8987225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):67, 52

               
               
               Conread position:1-262
               
               
               Cow position:chr8:58636231-58636506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-263
               
               
               Cow position:chr8:13737909-13738192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):121, 37

               
               
               Conread position:1-263
               
               
               Cow position:chr8:42556786-42556503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):67, 98

               
               
               Conread position:1-264
               
               
               Cow position:chr8:11805708-11805988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:1-264
               
               
               Cow position:chr8:19996261-19995983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr8:20836586-20836867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1-264
               
               
               Cow position:chr8:51060229-51059947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:1-265
               
               
               Cow position:chr8:8311593-8311313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr8:13374004-13374283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:206
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr8:13831021-13830741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr8:14258991-14259262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):187, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr8:21224612-21224332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:207
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr8:33814402-33814683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):21, 107

               
               
               Conread position:1-265
               
               
               Cow position:chr8:38561546-38561268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-265
               
               
               Cow position:chr8:41046633-41046383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):40, 56

               
               
               Conread position:1-265
               
               
               Cow position:chr8:42117266-42117544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr8:45354592-45354312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-265
               
               
               Cow position:chr8:50988606-50988326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr8:53320429-53320717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:215
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):114, 48

               
               
               Conread position:1-265
               
               
               Cow position:chr8:59277771-59277492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):28, 5

               
               
               Conread position:1-268
               
               
               Cow position:chr8:656212-655930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):110, 174

               
               
               Conread position:1-268
               
               
               Cow position:chr8:795292-795009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:833837-834109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):123, 9

               
               
               Conread position:1-268
               
               
               Cow position:chr8:1115329-1115048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):120, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:1469049-1469332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:1508418-1508135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:2166316-2166033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:2947275-2946992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:3852980-3852698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):108, 21

               
               
               Conread position:1-268
               
               
               Cow position:chr8:3957094-3957377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:4690313-4690596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:4727714-4727431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:5020915-5021198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:6328528-6328811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:6588118-6587835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:7131798-7132081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:8678391-8678108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:8873287-8873004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:8914641-8914922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):187, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr8:8971095-8970813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr8:9169341-9169060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):32, 38

               
               
               Conread position:1-268
               
               
               Cow position:chr8:10699978-10699713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:10739660-10739378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr8:10752265-10752546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):129, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr8:11118042-11117759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:11836424-11836697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):123, 75

               
               
               Conread position:1-268
               
               
               Cow position:chr8:11901322-11901039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:12286688-12286406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:12310794-12310511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:12453091-12453367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:12814304-12814583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):126, 90

               
               
               Conread position:1-268
               
               
               Cow position:chr8:14302613-14302896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:14587961-14587678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:14924970-14924687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr8:16195034-16195311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):129, 149

               
               
               Conread position:1-268
               
               
               Cow position:chr8:16302991-16303274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):129, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr8:16938989-16938706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:16939791-16939503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):39, 111

               
               
               Conread position:1-268
               
               
               Cow position:chr8:18049073-18049347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):189, 99

               
               
               Conread position:1-268
               
               
               Cow position:chr8:18296356-18296074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:18567993-18567707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:19600933-19601226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):112, 160

               
               
               Conread position:1-268
               
               
               Cow position:chr8:20885441-20885158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:21077064-21077340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr8:21195610-21195891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-268
               
               
               Cow position:chr8:21219619-21219894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):122, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr8:21788589-21788308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:21990016-21990298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-268
               
               
               Cow position:chr8:22376273-22375991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):121, 173

               
               
               Conread position:1-268
               
               
               Cow position:chr8:23019021-23018740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):123, 48

               
               
               Conread position:1-268
               
               
               Cow position:chr8:23137279-23137000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:24234593-24234876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):41, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr8:24404443-24404726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:24724711-24724991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):123, 50

               
               
               Conread position:1-268
               
               
               Cow position:chr8:24912132-24911849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:25093320-25093603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:25591280-25591562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:207
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:25772728-25772446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):112, 173

               
               
               Conread position:1-268
               
               
               Cow position:chr8:26014936-26015216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):121, 35

               
               
               Conread position:1-268
               
               
               Cow position:chr8:26176854-26176574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):123, 103

               
               
               Conread position:1-268
               
               
               Cow position:chr8:26607394-26607676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):79, 73

               
               
               Conread position:1-268
               
               
               Cow position:chr8:26625332-26625618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:26671255-26670972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:27152517-27152240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):123, 45

               
               
               Conread position:1-268
               
               
               Cow position:chr8:27366889-27366628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):94, 109

               
               
               Conread position:1-268
               
               
               Cow position:chr8:28321436-28321719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:28379319-28379030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):90, 64

               
               
               Conread position:1-268
               
               
               Cow position:chr8:29012116-29012397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:30488987-30488705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):129, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr8:31703613-31703320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr8:35473208-35473491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:35962318-35962601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:36560600-36560326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):123, 88

               
               
               Conread position:1-268
               
               
               Cow position:chr8:36632535-36632252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):123, 175

               
               
               Conread position:1-268
               
               
               Cow position:chr8:37391941-37391662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):83, 77

               
               
               Conread position:1-268
               
               
               Cow position:chr8:38089875-38090157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):123, 85

               
               
               Conread position:1-268
               
               
               Cow position:chr8:38357888-38358169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:209
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:39739775-39739492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:39845094-39845377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:40115643-40115360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:40330948-40330665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:40744104-40743815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):122, 64

               
               
               Conread position:1-268
               
               
               Cow position:chr8:41650648-41650932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):82, 75

               
               
               Conread position:1-268
               
               
               Cow position:chr8:41658895-41658614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:42159657-42159941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):41, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr8:43858588-43858308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):129, 15

               
               
               Conread position:1-268
               
               
               Cow position:chr8:44113977-44114259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:44500994-44500711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:45070840-45071118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):123, 52

               
               
               Conread position:1-268
               
               
               Cow position:chr8:45791822-45791541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-268
               
               
               Cow position:chr8:46235161-46235446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):42, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr8:46655490-46655770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:1-268
               
               
               Cow position:chr8:46843401-46843117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):77, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr8:47065687-47065405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:47656999-47656716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:48767209-48767502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr8:49620354-49620637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):82, 75

               
               
               Conread position:1-268
               
               
               Cow position:chr8:49720595-49720878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):123, 277

               
               
               Conread position:1-268
               
               
               Cow position:chr8:49934131-49933848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:50683957-50684240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:50957862-50957578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr8:51427161-51427444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):124, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:51602969-51602692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr8:51856193-51856476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):110, 174

               
               
               Conread position:1-268
               
               
               Cow position:chr8:51880464-51880180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):102, 142

               
               
               Conread position:1-268
               
               
               Cow position:chr8:52309265-52308982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):123, 152

               
               
               Conread position:1-268
               
               
               Cow position:chr8:54051775-54052051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):104, 123

               
               
               Conread position:1-268
               
               
               Cow position:chr8:55189922-55190205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr8:55444534-55444252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr8:58123824-58123544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):9, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr8:59177839-59177556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):123, 99

               
               
               Conread position:1-268
               
               
               Cow position:chr8:60065012-60065293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):129, 14

               
               
               Conread position:1-268
               
               
               Cow position:chr8:60067793-60068076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):110, 174

               
               
               Conread position:1-268
               
               
               Cow position:chr8:60813741-60813459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):129, 105

               
               
               Conread position:1-269
               
               
               Cow position:chr8:1500036-1499752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-269
               
               
               Cow position:chr8:3446614-3446334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr8:6464233-6463951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr8:7101453-7101175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr8:12445482-12445198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):88, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr8:12842516-12842800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr8:16297298-16297014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr8:22058752-22058462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1-269
               
               
               Cow position:chr8:38596755-38596474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):11, 50

               
               
               Conread position:1-269
               
               
               Cow position:chr8:39384683-39384399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr8:41943214-41943496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):110, 175

               
               
               Conread position:1-269
               
               
               Cow position:chr8:47678905-47679190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr8:48099683-48099399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:211
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr8:48955372-48955651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:210
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):46, 20

               
               
               Conread position:1-269
               
               
               Cow position:chr8:54069912-54070195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):22, 108

               
               
               Conread position:1-269
               
               
               Cow position:chr8:59258078-59257794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr8:61195557-61195269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:215
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):92, 178

               
               
               Conread position:1-270
               
               
               Cow position:chr8:1011057-1011331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 190

               
               
               Conread position:1-270
               
               
               Cow position:chr8:1936225-1936497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):43, 108

               
               
               Conread position:1-270
               
               
               Cow position:chr8:24868309-24868028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:208
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):122, 67

               
               
               Conread position:1-270
               
               
               Cow position:chr8:53608886-53608605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-270
               
               
               Cow position:chr8:57136070-57136354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:212
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):123, 97

               
               
               Conread position:1-275
               
               
               Cow position:chr8:53838845-53839135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-276
               
               
               Cow position:chr8:29918080-29917788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:215
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-277
               
               
               Cow position:chr8:19546258-19546543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):116, 10

               
               
               Conread position:1-277
               
               
               Cow position:chr8:21206348-21206640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:220
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-277
               
               
               Cow position:chr8:40888735-40888439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:217
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):77, 109

               
               
               Conread position:1-277
               
               
               Cow position:chr8:55122991-55122698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-282
               
               
               Cow position:chr8:17126618-17126319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:1-282
               
               
               Cow position:chr8:19194569-19194853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):95, 107

               
               
               Conread position:1-282
               
               
               Cow position:chr8:27659085-27659377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-283
               
               
               Cow position:chr8:32719424-32719696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):143, 75

               
               
               Conread position:1-284
               
               
               Cow position:chr8:1999089-1999387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-284
               
               
               Cow position:chr8:21827283-21826985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:218
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):6, 167

               
               
               Conread position:1-284
               
               
               Cow position:chr8:29416881-29416581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:224
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):128, 105

               
               
               Conread position:1-284
               
               
               Cow position:chr8:36648988-36648693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 110

               
               
               Conread position:1-284
               
               
               Cow position:chr8:47752455-47752156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):124, 105

               
               
               Conread position:1-289
               
               
               Cow position:chr8:28884271-28884578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:226
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:1-289
               
               
               Cow position:chr8:37122414-37122723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):13, 109

               
               
               Conread position:1-290
               
               
               Cow position:chr8:11136232-11135927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 90

               
               
               Conread position:1-290
               
               
               Cow position:chr8:23025862-23026161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:221
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):113, 147

               
               
               Conread position:1-290
               
               
               Cow position:chr8:30483149-30482847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-291
               
               
               Cow position:chr8:20080631-20080326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-293
               
               
               Cow position:chr8:36858676-36858368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):122, 85

               
               
               Conread position:1-293
               
               
               Cow position:chr8:38043218-38042906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 291

               
               
               Conread position:1-297
               
               
               Cow position:chr8:42009875-42010176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):162, 14

               
               
               Conread position:1-299
               
               
               Cow position:chr8:47868779-47868459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:1-303
               
               
               Cow position:chr8:225942-225619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:234
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):41, 107

               
               
               Conread position:1-303
               
               
               Cow position:chr8:7607711-7607390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:241
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-303
               
               
               Cow position:chr8:54302440-54302754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-303
               
               
               Cow position:chr8:57943917-57943601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 35

               
               
               Conread position:1-305
               
               
               Cow position:chr8:28669843-28670164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:234
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-306
               
               
               Cow position:chr8:41951083-41951405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):115, 27

               
               
               Conread position:1-306
               
               
               Cow position:chr8:45830320-45830644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 150

               
               
               Conread position:1-306
               
               
               Cow position:chr8:51446245-51445923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):123, 112

               
               
               Conread position:2-157
               
               
               Cow position:chr8:615571-615416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-188
               
               
               Cow position:chr8:38331040-38330853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):121, 63

               
               
               Conread position:2-211
               
               
               Cow position:chr8:19053196-19053419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):34, 26

               
               
               Conread position:2-258
               
               
               Cow position:chr8:27600755-27601025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):122, 41

               
               
               Conread position:2-264
               
               
               Cow position:chr8:43439051-43439327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:205
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:2-264
               
               
               Cow position:chr8:47463451-47463729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-268
               
               
               Cow position:chr8:18656823-18656542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):122, 82

               
               
               Conread position:2-268
               
               
               Cow position:chr8:33652916-33652634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-268
               
               
               Cow position:chr8:36893449-36893164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:2-270
               
               
               Cow position:chr8:983180-983463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:215
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):120, 89

               
               
               Conread position:2-283
               
               
               Cow position:chr8:29027156-29026862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:3-186
               
               
               Cow position:chr8:6747676-6747494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):119, 88

               
               
               Conread position:3-186
               
               
               Cow position:chr8:45288007-45287824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):82, 106

               
               
               Conread position:3-260
               
               
               Cow position:chr8:50949229-50949507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):33, 55

               
               
               Conread position:3-262
               
               
               Cow position:chr8:33407369-33407094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):121, 105

               
               
               Conread position:3-265
               
               
               Cow position:chr8:43478515-43478792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-268
               
               
               Cow position:chr8:6077067-6076797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):184, 114

               
               
               Conread position:3-268
               
               
               Cow position:chr8:33431738-33432000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):187, 33

               
               
               Conread position:3-269
               
               
               Cow position:chr8:46329145-46329426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):120, 104

               
               
               Conread position:3-272
               
               
               Cow position:chr8:47666363-47666081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):121, 77

               
               
               Conread position:3-284
               
               
               Cow position:chr8:1597107-1596811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):119, 75

               
               
               Conread position:4-157
               
               
               Cow position:chr8:52619850-52619697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):120, 103

               
               
               Conread position:4-263
               
               
               Cow position:chr8:8312567-8312298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:4-265
               
               
               Cow position:chr8:45878514-45878787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):117, 32

               
               
               Conread position:4-265
               
               
               Cow position:chr8:45925095-45925369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):117, 103

               
               
               Conread position:4-269
               
               
               Cow position:chr8:41747624-41747347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):132, 12

               
               
               Conread position:4-301
               
               
               Cow position:chr8:27368556-27368865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):120, 104

               
               
               Conread position:6-269
               
               
               Cow position:chr8:54210065-54210348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:7-258
               
               
               Cow position:chr8:8531651-8531386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):120, 21

               
               
               Conread position:7-260
               
               
               Cow position:chr8:34253480-34253749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):117, 101

               
               
               Conread position:7-264
               
               
               Cow position:chr8:35944806-35945079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):117, 100

               
               
               Conread position:7-269
               
               
               Cow position:chr8:55026428-55026709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:9-186
               
               
               Cow position:chr8:46615244-46615423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):115, 98

               
               
               Conread position:9-284
               
               
               Cow position:chr8:9917362-9917655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):113, 159

               
               
               Conread position:9-296
               
               
               Cow position:chr8:6087521-6087817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):163, 29

               
               
               Conread position:10-258
               
               
               Cow position:chr8:24660036-24659772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):114, 97

               
               
               Conread position:10-306
               
               
               Cow position:chr8:47861463-47861152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):114, 40

               
               
               Conread position:12-268
               
               
               Cow position:chr8:28251126-28250855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):112, 16

               
               
               Conread position:12-268
               
               
               Cow position:chr8:49397642-49397914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):112, 95

               
               
               Conread position:12-268
               
               
               Cow position:chr8:60454679-60454939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):176, 95

               
               
               Conread position:15-268
               
               
               Cow position:chr8:5679231-5678961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):144, 92

               
               
               Conread position:15-269
               
               
               Cow position:chr8:9640828-9641098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):109, 92

               
               
               Conread position:15-270
               
               
               Cow position:chr8:17180605-17180339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:200
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):109, 26

               
               
               Conread position:16-258
               
               
               Cow position:chr8:4274140-4274379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):161, 186

               
               
               Conread position:16-263
               
               
               Cow position:chr8:14947837-14947563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):44, 100

               
               
               Conread position:16-268
               
               
               Cow position:chr8:39182572-39182303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:19-292
               
               
               Cow position:chr8:47466459-47466172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):105, 88

               
               
               Conread position:21-268
               
               
               Cow position:chr8:4523368-4523108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:22-269
               
               
               Cow position:chr8:24933631-24933897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:23-264
               
               
               Cow position:chr8:58875565-58875816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):171, 73

               
               
               Conread position:23-265
               
               
               Cow position:chr8:8325627-8325370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):12, 85

               
               
               Conread position:23-282
               
               
               Cow position:chr8:44005278-44005005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):101, 50

               
               
               Conread position:23-287
               
               
               Cow position:chr8:38523258-38523531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):101, 17

               
               
               Conread position:23-302
               
               
               Cow position:chr8:19283911-19284206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):8, 85

               
               
               Conread position:24-276
               
               
               Cow position:chr8:21151480-21151203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):12, 6

               
               
               Conread position:25-268
               
               
               Cow position:chr8:55710890-55711133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 151

               
               
               Conread position:27-268
               
               
               Cow position:chr8:8031016-8030759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):97, 80

               
               
               Conread position:28-268
               
               
               Cow position:chr8:11787722-11787467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):96, 80

               
               
               Conread position:30-188
               
               
               Cow position:chr8:24128393-24128553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):95, 77

               
               
               Conread position:30-269
               
               
               Cow position:chr8:24987942-24988192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):94, 46

               
               
               Conread position:31-249
               
               
               Cow position:chr8:39807444-39807215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):93, 76

               
               
               Conread position:35-196
               
               
               Cow position:chr8:55726769-55726606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):89, 72

               
               
               Conread position:35-265
               
               
               Cow position:chr8:53787757-53788003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):89, 72

               
               
               Conread position:36-265
               
               
               Cow position:chr8:57042623-57042380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):88, 71

               
               
               Conread position:39-303
               
               
               Cow position:chr8:55198043-55198325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):85, 69

               
               
               Conread position:41-268
               
               
               Cow position:chr8:51444484-51444255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):83, 66

               
               
               Conread position:43-270
               
               
               Cow position:chr8:9943022-9942779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):81, 64

               
               
               Conread position:49-269
               
               
               Cow position:chr8:18729950-18730181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):75, 26

               
               
               Conread position:50-268
               
               
               Cow position:chr8:22085121-22084888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):74, 57

               
               
               Conread position:51-268
               
               
               Cow position:chr8:43852596-43852365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):73, 63

               
               
               Conread position:53-268
               
               
               Cow position:chr8:661053-660822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):71, 54

               
               
               Conread position:53-268
               
               
               Cow position:chr8:53430753-53430987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:53-270
               
               
               Cow position:chr8:33584652-33584890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):67, 44

               
               
               Conread position:53-299
               
               
               Cow position:chr8:42794837-42794574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):71, 123

               
               
               Conread position:54-268
               
               
               Cow position:chr8:47889788-47890018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):70, 53

               
               
               Conread position:58-265
               
               
               Cow position:chr8:19443456-19443233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):66, 49

               
               
               Conread position:58-269
               
               
               Cow position:chr8:19368140-19367913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:58-269
               
               
               Cow position:chr8:26650824-26651050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):62, 49

               
               
               Conread position:59-269
               
               
               Cow position:chr8:60267355-60267581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):65, 48

               
               
               Conread position:60-306
               
               
               Cow position:chr8:37376603-37376339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):64, 16

               
               
               Conread position:64-268
               
               
               Cow position:chr8:42881065-42880852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):60, 43

               
               
               Conread position:81-268
               
               
               Cow position:chr8:35556007-35555817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):43, 26

               
               
               Conread position:82-268
               
               
               Cow position:chr8:46952074-46952274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):42, 26

               
               
               Conread position:101-270
               
               
               Cow position:chr8:26600119-26600303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:106-303
               
               
               Cow position:chr8:35581085-35580879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):18, 9

               
               
               Conread position:1-122
               
               
               Cow position:chr9:55620711-55620590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):88, 108

               
               
               Conread position:1-154
               
               
               Cow position:chr9:8600229-8600074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:1-180
               
               
               Cow position:chr9:58252138-58251958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-182
               
               
               Cow position:chr9:3060757-3060940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-185
               
               
               Cow position:chr9:3311855-3312041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-186
               
               
               Cow position:chr9:24917720-24917534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:1-188
               
               
               Cow position:chr9:5345842-5345653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-188
               
               
               Cow position:chr9:20901558-20901739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:1-188
               
               
               Cow position:chr9:51692033-51691850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:1-188
               
               
               Cow position:chr9:63555943-63555753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:1-189
               
               
               Cow position:chr9:5327797-5327609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):123, 52

               
               
               Conread position:1-189
               
               
               Cow position:chr9:18243414-18243224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-189
               
               
               Cow position:chr9:18506260-18506070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-189
               
               
               Cow position:chr9:40142791-40142601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-196
               
               
               Cow position:chr9:5533366-5533158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:1-197
               
               
               Cow position:chr9:18343553-18343355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-201
               
               
               Cow position:chr9:18215272-18215478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):121, 85

               
               
               Conread position:1-211
               
               
               Cow position:chr9:55341719-55341940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):76, 108

               
               
               Conread position:1-249
               
               
               Cow position:chr9:33067796-33067532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-249
               
               
               Cow position:chr9:52001534-52001286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):123, 22

               
               
               Conread position:1-253
               
               
               Cow position:chr9:41417041-41416773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-256
               
               
               Cow position:chr9:22754428-22754171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):177, 37

               
               
               Conread position:1-258
               
               
               Cow position:chr9:16218069-16218340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 109

               
               
               Conread position:1-258
               
               
               Cow position:chr9:18252351-18252624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-258
               
               
               Cow position:chr9:22439935-22440198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:195
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):118, 69

               
               
               Conread position:1-259
               
               
               Cow position:chr9:4929199-4928930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:1-259
               
               
               Cow position:chr9:34945456-34945175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):113, 40

               
               
               Conread position:1-260
               
               
               Cow position:chr9:59479289-59479014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-262
               
               
               Cow position:chr9:648354-648076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):43, 79

               
               
               Conread position:1-262
               
               
               Cow position:chr9:5524768-5524493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:208
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):123, 29

               
               
               Conread position:1-262
               
               
               Cow position:chr9:8525637-8525367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):37, 65

               
               
               Conread position:1-262
               
               
               Cow position:chr9:10143854-10144132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):61, 107

               
               
               Conread position:1-262
               
               
               Cow position:chr9:37017463-37017186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-263
               
               
               Cow position:chr9:8720337-8720060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):124, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr9:13994756-13994488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-264
               
               
               Cow position:chr9:52407741-52407470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:203
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):35, 29

               
               
               Conread position:1-264
               
               
               Cow position:chr9:64049982-64050260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:206
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr9:125949-125669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-265
               
               
               Cow position:chr9:5269135-5268855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:207
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):123, 48

               
               
               Conread position:1-265
               
               
               Cow position:chr9:8998921-8998654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:207
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):187, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr9:9260706-9260426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):106, 278

               
               
               Conread position:1-265
               
               
               Cow position:chr9:17579894-17579614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr9:17740369-17740646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:202
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr9:19155716-19155437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1-265
               
               
               Cow position:chr9:20393551-20393829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:210
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr9:20816420-20816140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr9:21840715-21840453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):29, 107

               
               
               Conread position:1-265
               
               
               Cow position:chr9:22656367-22656647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:210
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr9:32812913-32812645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr9:34742050-34742327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):123, 49

               
               
               Conread position:1-265
               
               
               Cow position:chr9:39681937-39681657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr9:39971612-39971332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):53, 15

               
               
               Conread position:1-265
               
               
               Cow position:chr9:46316210-46316489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr9:48017243-48017524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):53, 108

               
               
               Conread position:1-265
               
               
               Cow position:chr9:53607815-53608095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-266
               
               
               Cow position:chr9:1950492-1950220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:206
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):118, 75

               
               
               Conread position:1-266
               
               
               Cow position:chr9:48773909-48773622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-267
               
               
               Cow position:chr9:41999681-41999963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr9:1520150-1520433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr9:1855854-1855575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):123, 73

               
               
               Conread position:1-268
               
               
               Cow position:chr9:1983927-1984210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr9:1990985-1990698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):121, 95

               
               
               Conread position:1-268
               
               
               Cow position:chr9:2676481-2676198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):74, 79

               
               
               Conread position:1-268
               
               
               Cow position:chr9:2717882-2718162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):123, 40

               
               
               Conread position:1-268
               
               
               Cow position:chr9:3756279-3755996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):82, 75

               
               
               Conread position:1-268
               
               
               Cow position:chr9:3997204-3996922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:215
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr9:4939925-4939642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):119, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr9:5628387-5628670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):108, 174

               
               
               Conread position:1-268
               
               
               Cow position:chr9:5839574-5839281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):37, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr9:5886830-5886545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr9:6253133-6253415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr9:6693693-6693977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):129, 175

               
               
               Conread position:1-268
               
               
               Cow position:chr9:7006308-7006592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):113, 156

               
               
               Conread position:1-268
               
               
               Cow position:chr9:7058486-7058202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr9:7830326-7830043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr9:8235814-8236097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr9:8387681-8387964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr9:9016641-9016923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 48

               
               
               Conread position:1-268
               
               
               Cow position:chr9:9780374-9780096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):111, 18

               
               
               Conread position:1-268
               
               
               Cow position:chr9:10326802-10327086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr9:10566796-10566513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):9, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr9:10857600-10857871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 60

               
               
               Conread position:1-268
               
               
               Cow position:chr9:11477691-11477406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr9:11841591-11841308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr9:12285138-12284855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-268
               
               
               Cow position:chr9:13303818-13304101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):123, 73

               
               
               Conread position:1-268
               
               
               Cow position:chr9:13313111-13313394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr9:13472023-13471745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):189, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr9:15805347-15805625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 14

               
               
               Conread position:1-268
               
               
               Cow position:chr9:15842987-15843269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr9:17296537-17296250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr9:17410610-17410893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr9:17905179-17905463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr9:19222463-19222745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:209
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr9:19546087-19546370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr9:20407208-20406932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):123, 49

               
               
               Conread position:1-268
               
               
               Cow position:chr9:21412870-21413153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr9:22623582-22623299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr9:22755369-22755086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):111, 37

               
               
               Conread position:1-268
               
               
               Cow position:chr9:23000574-23000857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr9:23343174-23342881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr9:24726100-24726382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr9:26577280-26577565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):35, 26

               
               
               Conread position:1-268
               
               
               Cow position:chr9:27781343-27781060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr9:28681769-28682052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr9:28773697-28773413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr9:29106597-29106881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):106, 175

               
               
               Conread position:1-268
               
               
               Cow position:chr9:29330077-29330354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):62, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr9:29516319-29516036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr9:30187274-30187556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-268
               
               
               Cow position:chr9:31077093-31077382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):59, 112

               
               
               Conread position:1-268
               
               
               Cow position:chr9:32236838-32236555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr9:32238962-32238681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr9:32972934-32973217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr9:33843892-33844172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):123, 103

               
               
               Conread position:1-268
               
               
               Cow position:chr9:34000034-34000315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):123, 97

               
               
               Conread position:1-268
               
               
               Cow position:chr9:34696717-34697000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr9:37158043-37157761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr9:37173836-37173553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr9:37251581-37251864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr9:37253973-37254256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr9:38634348-38634629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:209
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):126, 46

               
               
               Conread position:1-268
               
               
               Cow position:chr9:40316693-40316973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):110, 14

               
               
               Conread position:1-268
               
               
               Cow position:chr9:40326971-40327254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:209
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr9:42570784-42571067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr9:46627879-46628162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr9:46667214-46666937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):129, 52

               
               
               Conread position:1-268
               
               
               Cow position:chr9:46875247-46874963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):21, 107

               
               
               Conread position:1-268
               
               
               Cow position:chr9:47882717-47882434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr9:49982526-49982801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr9:50519865-50519577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):32, 38

               
               
               Conread position:1-268
               
               
               Cow position:chr9:50900081-50899800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr9:51178084-51177802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr9:51621287-51620997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):19, 113

               
               
               Conread position:1-268
               
               
               Cow position:chr9:52753652-52753371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr9:56301025-56300746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr9:59161539-59161256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr9:59454330-59454047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chr9:59539574-59539854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):131, 27

               
               
               Conread position:1-268
               
               
               Cow position:chr9:60590351-60590636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr9:64017649-64017366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr9:3053659-3053938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):187, 119

               
               
               Conread position:1-269
               
               
               Cow position:chr9:6764202-6763918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):82, 75

               
               
               Conread position:1-269
               
               
               Cow position:chr9:6887147-6887432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:216
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):124, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr9:7159260-7159539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):82, 35

               
               
               Conread position:1-269
               
               
               Cow position:chr9:15982503-15982785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr9:21459583-21459860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 109

               
               
               Conread position:1-269
               
               
               Cow position:chr9:25969927-25969641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):69, 108

               
               
               Conread position:1-269
               
               
               Cow position:chr9:26478134-26477847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):123, 60

               
               
               Conread position:1-269
               
               
               Cow position:chr9:26718645-26718929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-269
               
               
               Cow position:chr9:28657212-28656929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr9:28726151-28726431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):69, 35

               
               
               Conread position:1-269
               
               
               Cow position:chr9:29184559-29184843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):126, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr9:34059064-34058781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):129, 35

               
               
               Conread position:1-269
               
               
               Cow position:chr9:35129403-35129118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:214
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):35, 26

               
               
               Conread position:1-269
               
               
               Cow position:chr9:35592570-35592278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):38, 107

               
               
               Conread position:1-269
               
               
               Cow position:chr9:35904175-35904456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):123, 75

               
               
               Conread position:1-269
               
               
               Cow position:chr9:44914535-44914817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 106

               
               
               Conread position:1-269
               
               
               Cow position:chr9:61739486-61739211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):92, 112

               
               
               Conread position:1-270
               
               
               Cow position:chr9:5400342-5400057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):123, 97

               
               
               Conread position:1-270
               
               
               Cow position:chr9:9200144-9200427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):121, 107

               
               
               Conread position:1-270
               
               
               Cow position:chr9:25701624-25701342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-270
               
               
               Cow position:chr9:28025389-28025674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:1-270
               
               
               Cow position:chr9:51929275-51929016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):124, 38

               
               
               Conread position:1-270
               
               
               Cow position:chr9:54997464-54997731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-270
               
               
               Cow position:chr9:62668984-62668698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):21, 107

               
               
               Conread position:1-270
               
               
               Cow position:chr9:64105572-64105280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):34, 100

               
               
               Conread position:1-280
               
               
               Cow position:chr9:29338457-29338752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:214
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-281
               
               
               Cow position:chr9:6089682-6089385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-282
               
               
               Cow position:chr9:42172286-42172578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):32, 38

               
               
               Conread position:1-284
               
               
               Cow position:chr9:8909004-8908704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:220
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-284
               
               
               Cow position:chr9:28017257-28016959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):123, 32

               
               
               Conread position:1-284
               
               
               Cow position:chr9:34901042-34901328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):123, 71

               
               
               Conread position:1-287
               
               
               Cow position:chr9:23005028-23004746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:210
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-289
               
               
               Cow position:chr9:8338621-8338324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):123, 32

               
               
               Conread position:1-289
               
               
               Cow position:chr9:25238847-25238543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-293
               
               
               Cow position:chr9:20900536-20900845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-303
               
               
               Cow position:chr9:17871226-17871548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):123, 75

               
               
               Conread position:1-305
               
               
               Cow position:chr9:22803093-22802774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-305
               
               
               Cow position:chr9:25959034-25958716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-306
               
               
               Cow position:chr9:23388098-23388423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):41, 108

               
               
               Conread position:2-188
               
               
               Cow position:chr9:25764705-25764518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):122, 108

               
               
               Conread position:2-257
               
               
               Cow position:chr9:1997709-1997436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:2-266
               
               
               Cow position:chr9:3932542-3932263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):31, 37

               
               
               Conread position:2-268
               
               
               Cow position:chr9:9567129-9566847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):120, 105

               
               
               Conread position:2-268
               
               
               Cow position:chr9:9723306-9723587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-268
               
               
               Cow position:chr9:19539673-19539393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):128, 105

               
               
               Conread position:2-268
               
               
               Cow position:chr9:26115276-26115554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):122, 25

               
               
               Conread position:2-268
               
               
               Cow position:chr9:30401840-30402124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):68, 26

               
               
               Conread position:2-269
               
               
               Cow position:chr9:12259689-12259403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):91, 176

               
               
               Conread position:2-269
               
               
               Cow position:chr9:27038682-27038966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):34, 106

               
               
               Conread position:2-284
               
               
               Cow position:chr9:43302034-43301742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):122, 48

               
               
               Conread position:2-303
               
               
               Cow position:chr9:55983149-55983470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 244

               
               
               Conread position:3-261
               
               
               Cow position:chr9:52632938-52633207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):185, 105

               
               
               Conread position:3-265
               
               
               Cow position:chr9:8154752-8154478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:202
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):185, 111

               
               
               Conread position:3-265
               
               
               Cow position:chr9:34523796-34523525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 9

               
               
               Conread position:3-268
               
               
               Cow position:chr9:9558556-9558276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-268
               
               
               Cow position:chr9:9817471-9817205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:200
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):14, 7

               
               
               Conread position:3-268
               
               
               Cow position:chr9:30162773-30162494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):121, 105

               
               
               Conread position:3-268
               
               
               Cow position:chr9:34238184-34237904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-279
               
               
               Cow position:chr9:19266572-19266868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):68, 35

               
               
               Conread position:3-284
               
               
               Cow position:chr9:29361861-29362159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):39, 97

               
               
               Conread position:5-268
               
               
               Cow position:chr9:62729768-62730046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:206
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):119, 102

               
               
               Conread position:5-269
               
               
               Cow position:chr9:61846109-61846380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):116, 71

               
               
               Conread position:6-265
               
               
               Cow position:chr9:49292517-49292791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):122, 30

               
               
               Conread position:7-268
               
               
               Cow position:chr9:58674328-58674053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):117, 93

               
               
               Conread position:8-303
               
               
               Cow position:chr9:19079428-19079729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):56, 31

               
               
               Conread position:10-250
               
               
               Cow position:chr9:13493613-13493873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):20, 101

               
               
               Conread position:11-269
               
               
               Cow position:chr9:17568710-17568433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):62, 17

               
               
               Conread position:12-269
               
               
               Cow position:chr9:16300003-16300273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):112, 31

               
               
               Conread position:15-250
               
               
               Cow position:chr9:11312950-11313200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):109, 92

               
               
               Conread position:15-260
               
               
               Cow position:chr9:54413048-54412787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):109, 92

               
               
               Conread position:15-305
               
               
               Cow position:chr9:34689024-34689328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:218
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):175, 92

               
               
               Conread position:16-268
               
               
               Cow position:chr9:44269141-44268874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):108, 91

               
               
               Conread position:16-269
               
               
               Cow position:chr9:8778635-8778910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):108, 92

               
               
               Conread position:17-263
               
               
               Cow position:chr9:33100591-33100841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):107, 205

               
               
               Conread position:17-281
               
               
               Cow position:chr9:21462276-21462557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):16, 22

               
               
               Conread position:20-259
               
               
               Cow position:chr9:56293908-56293665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):103, 132

               
               
               Conread position:21-263
               
               
               Cow position:chr9:38183920-38184177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):102, 15

               
               
               Conread position:23-188
               
               
               Cow position:chr9:24887816-24887649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:23-188
               
               
               Cow position:chr9:45284986-45285155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:23-268
               
               
               Cow position:chr9:29149340-29149096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):101, 18

               
               
               Conread position:24-265
               
               
               Cow position:chr9:47499645-47499898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):100, 12

               
               
               Conread position:24-268
               
               
               Cow position:chr9:4977108-4976847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:25-268
               
               
               Cow position:chr9:55534054-55534314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:26-268
               
               
               Cow position:chr9:55074584-55074839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):154, 29

               
               
               Conread position:28-265
               
               
               Cow position:chr9:44500292-44500544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):96, 63

               
               
               Conread position:29-268
               
               
               Cow position:chr9:37510563-37510313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):95, 78

               
               
               Conread position:32-258
               
               
               Cow position:chr9:28746978-28747219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):92, 74

               
               
               Conread position:36-261
               
               
               Cow position:chr9:1846470-1846708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:36-268
               
               
               Cow position:chr9:7410323-7410078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):87, 71

               
               
               Conread position:37-258
               
               
               Cow position:chr9:4631011-4630789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):87, 28

               
               
               Conread position:38-268
               
               
               Cow position:chr9:49434053-49434299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):86, 69

               
               
               Conread position:38-284
               
               
               Cow position:chr9:5246389-5246125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):9, 70

               
               
               Conread position:41-268
               
               
               Cow position:chr9:3388229-3387987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):83, 66

               
               
               Conread position:41-269
               
               
               Cow position:chr9:55425442-55425686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):84, 66

               
               
               Conread position:41-273
               
               
               Cow position:chr9:30722465-30722223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):79, 66

               
               
               Conread position:41-275
               
               
               Cow position:chr9:15006238-15006494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):83, 67

               
               
               Conread position:42-265
               
               
               Cow position:chr9:1464235-1463997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):81, 72

               
               
               Conread position:42-268
               
               
               Cow position:chr9:6707301-6707058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):82, 65

               
               
               Conread position:42-269
               
               
               Cow position:chr9:64344483-64344724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):60, 235

               
               
               Conread position:42-284
               
               
               Cow position:chr9:31663003-31662746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):82, 65

               
               
               Conread position:43-268
               
               
               Cow position:chr9:6952622-6952386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):13, 56

               
               
               Conread position:52-260
               
               
               Cow position:chr9:25037779-25037554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 56

               
               
               Conread position:53-265
               
               
               Cow position:chr9:8998083-8997855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):67, 54

               
               
               Conread position:56-268
               
               
               Cow position:chr9:5434135-5433927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):68, 35

               
               
               Conread position:61-305
               
               
               Cow position:chr9:23422212-23422464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):63, 46

               
               
               Conread position:67-263
               
               
               Cow position:chr9:22828585-22828373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):57, 40

               
               
               Conread position:67-268
               
               
               Cow position:chr9:21963096-21963313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):53, 40

               
               
               Conread position:67-303
               
               
               Cow position:chr9:6626981-6626733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):57, 37

               
               
               Conread position:76-268
               
               
               Cow position:chr9:56031831-56032033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):48, 15

               
               
               Conread position:78-303
               
               
               Cow position:chr9:29580138-29579896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):46, 32

               
               
               Conread position:78-306
               
               
               Cow position:chr9:51566005-51566240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):111, 29

               
               
               Conread position:81-268
               
               
               Cow position:chr9:31124423-31124627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:98-268
               
               
               Cow position:chr9:31347426-31347249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):32, 10

               
               
               Conread position:104-265
               
               
               Cow position:chr9:1751885-1751712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:1-122
               
               
               Cow position:chrX:30421671-30421550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):86, 107

               
               
               Conread position:1-164
               
               
               Cow position:chrX:1958512-1958346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-167
               
               
               Cow position:chrX:40542146-40542311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-169
               
               
               Cow position:chrX:40187455-40187625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):123, 97

               
               
               Conread position:1-182
               
               
               Cow position:chrX:40559786-40559603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-184
               
               
               Cow position:chrX:22771657-22771470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1-185
               
               
               Cow position:chrX:39730662-39730477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):129, 40

               
               
               Conread position:1-185
               
               
               Cow position:chrX:45976036-45976222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):124, 27

               
               
               Conread position:1-186
               
               
               Cow position:chrX:35260453-35260640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-188
               
               
               Cow position:chrX:12996381-12996195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:1-188
               
               
               Cow position:chrX:45113111-45113302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:1-189
               
               
               Cow position:chrX:865873-866063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-257
               
               
               Cow position:chrX:23316943-23316671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:1-258
               
               
               Cow position:chrX:25816780-25816505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:209
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):21, 108

               
               
               Conread position:1-258
               
               
               Cow position:chrX:34564777-34565050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-258
               
               
               Cow position:chrX:38852636-38852909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-259
               
               
               Cow position:chrX:13405820-13405545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-259
               
               
               Cow position:chrX:26755152-26754878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:1-260
               
               
               Cow position:chrX:1499065-1499346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-260
               
               
               Cow position:chrX:10528297-10528022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-260
               
               
               Cow position:chrX:16040204-16039928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):41, 98

               
               
               Conread position:1-260
               
               
               Cow position:chrX:23988018-23988289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):187, 106

               
               
               Conread position:1-260
               
               
               Cow position:chrX:29903219-29903494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-260
               
               
               Cow position:chrX:31202318-31202592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):118, 29

               
               
               Conread position:1-262
               
               
               Cow position:chrX:11674533-11674812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):126, 54

               
               
               Conread position:1-262
               
               
               Cow position:chrX:24826811-24827093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):83, 27

               
               
               Conread position:1-262
               
               
               Cow position:chrX:32871309-32871032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-262
               
               
               Cow position:chrX:37781599-37781331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):118, 9

               
               
               Conread position:1-263
               
               
               Cow position:chrX:28632998-28632723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):124, 18

               
               
               Conread position:1-263
               
               
               Cow position:chrX:36250387-36250107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):113, 105

               
               
               Conread position:1-264
               
               
               Cow position:chrX:33763821-33764100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:205
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-264
               
               
               Cow position:chrX:37489203-37489474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:212
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):92, 109

               
               
               Conread position:1-264
               
               
               Cow position:chrX:44961190-44961469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):79, 73

               
               
               Conread position:1-265
               
               
               Cow position:chrX:3361298-3361576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chrX:3649331-3649052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chrX:7512969-7513248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 69

               
               
               Conread position:1-265
               
               
               Cow position:chrX:10256665-10256387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chrX:15007674-15007394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chrX:16000001-15999745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):193, 22

               
               
               Conread position:1-265
               
               
               Cow position:chrX:18488237-18487957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chrX:21415558-21415845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):114, 49

               
               
               Conread position:1-265
               
               
               Cow position:chrX:24366474-24366194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:210
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):79, 27

               
               
               Conread position:1-265
               
               
               Cow position:chrX:24587977-24587697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-265
               
               
               Cow position:chrX:27117440-27117721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chrX:27498244-27498525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:1-265
               
               
               Cow position:chrX:34554213-34554487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):123, 73

               
               
               Conread position:1-265
               
               
               Cow position:chrX:35388433-35388150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):52, 109

               
               
               Conread position:1-265
               
               
               Cow position:chrX:35680822-35681092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-265
               
               
               Cow position:chrX:36195569-36195849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:209
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chrX:38072290-38072014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-265
               
               
               Cow position:chrX:39546503-39546216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:215
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):111, 107

               
               
               Conread position:1-265
               
               
               Cow position:chrX:39560175-39559895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-265
               
               
               Cow position:chrX:41122547-41122829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-265
               
               
               Cow position:chrX:42086340-42086619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 106

               
               
               Conread position:1-265
               
               
               Cow position:chrX:45373806-45373535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:202
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):119, 97

               
               
               Conread position:1-267
               
               
               Cow position:chrX:36513938-36514212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):11, 223

               
               
               Conread position:1-268
               
               
               Cow position:chrX:160905-161188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:323392-323675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:525153-525436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:1055915-1055628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:1331413-1331692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):102, 117

               
               
               Conread position:1-268
               
               
               Cow position:chrX:1550424-1550710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):107, 177

               
               
               Conread position:1-268
               
               
               Cow position:chrX:2479150-2478867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-268
               
               
               Cow position:chrX:3405878-3405595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):123, 22

               
               
               Conread position:1-268
               
               
               Cow position:chrX:3417660-3417379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):123, 21

               
               
               Conread position:1-268
               
               
               Cow position:chrX:3596590-3596307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:3653251-3653523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):193, 99

               
               
               Conread position:1-268
               
               
               Cow position:chrX:4123313-4123595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):77, 37

               
               
               Conread position:1-268
               
               
               Cow position:chrX:4869036-4869303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):123, 21

               
               
               Conread position:1-268
               
               
               Cow position:chrX:5375835-5376129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):27, 117

               
               
               Conread position:1-268
               
               
               Cow position:chrX:6012628-6012347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-268
               
               
               Cow position:chrX:6372658-6372941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:6493209-6493492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:6543734-6544016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):126, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:6566551-6566834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:7571380-7571666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):32, 38

               
               
               Conread position:1-268
               
               
               Cow position:chrX:7572857-7573139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1-268
               
               
               Cow position:chrX:8434727-8434447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):123, 175

               
               
               Conread position:1-268
               
               
               Cow position:chrX:8483567-8483848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:8782221-8782504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:9018826-9018543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:9085856-9085573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:9169137-9168854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:9651569-9651285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):35, 21

               
               
               Conread position:1-268
               
               
               Cow position:chrX:10416048-10415766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:10866389-10866107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-268
               
               
               Cow position:chrX:11819841-11820118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):123, 86

               
               
               Conread position:1-268
               
               
               Cow position:chrX:11950016-11949733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1-268
               
               
               Cow position:chrX:12249279-12249561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):123, 66

               
               
               Conread position:1-268
               
               
               Cow position:chrX:12309909-12309629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):124, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:12458174-12458458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):121, 175

               
               
               Conread position:1-268
               
               
               Cow position:chrX:14030495-14030778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:14162668-14162951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:1-268
               
               
               Cow position:chrX:14407973-14407690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:14458690-14458408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:14462786-14463073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):107, 159

               
               
               Conread position:1-268
               
               
               Cow position:chrX:14598323-14598605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:15120409-15120129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):112, 21

               
               
               Conread position:1-268
               
               
               Cow position:chrX:15439160-15438889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):178, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:15531675-15531395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:16046624-16046908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-268
               
               
               Cow position:chrX:16074065-16074336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:16078145-16078429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:1-268
               
               
               Cow position:chrX:16086646-16086364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):119, 52

               
               
               Conread position:1-268
               
               
               Cow position:chrX:16279128-16279409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):124, 53

               
               
               Conread position:1-268
               
               
               Cow position:chrX:16285688-16285969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:16359532-16359249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:16465777-16466060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:16478392-16478662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:16703148-16703430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):112, 155

               
               
               Conread position:1-268
               
               
               Cow position:chrX:16711432-16711714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:1-268
               
               
               Cow position:chrX:16853913-16853629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:214
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):34, 107

               
               
               Conread position:1-268
               
               
               Cow position:chrX:17497573-17497856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:17892016-17892303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 110

               
               
               Conread position:1-268
               
               
               Cow position:chrX:18078434-18078150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):123, 175

               
               
               Conread position:1-268
               
               
               Cow position:chrX:18462498-18462215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:18898173-18897891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):123, 35

               
               
               Conread position:1-268
               
               
               Cow position:chrX:18950260-18949985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):123, 49

               
               
               Conread position:1-268
               
               
               Cow position:chrX:19109564-19109281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:19399255-19399538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:20582508-20582790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):123, 75

               
               
               Conread position:1-268
               
               
               Cow position:chrX:20675584-20675860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):123, 59

               
               
               Conread position:1-268
               
               
               Cow position:chrX:20742464-20742746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):123, 75

               
               
               Conread position:1-268
               
               
               Cow position:chrX:20878285-20878003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:21226951-21227232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:205
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):131, 174

               
               
               Conread position:1-268
               
               
               Cow position:chrX:21785246-21785527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):112, 247

               
               
               Conread position:1-268
               
               
               Cow position:chrX:22449391-22449674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):124, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:22493484-22493767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:22538477-22538194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:1-268
               
               
               Cow position:chrX:22568540-22568259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:209
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:22600936-22600656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):187, 78

               
               
               Conread position:1-268
               
               
               Cow position:chrX:22612863-22613146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:22811363-22811646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:22812539-22812822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:23038520-23038237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:23280484-23280766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:23341516-23341237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):178, 113

               
               
               Conread position:1-268
               
               
               Cow position:chrX:23387061-23386779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):123, 35

               
               
               Conread position:1-268
               
               
               Cow position:chrX:23396084-23396366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):123, 35

               
               
               Conread position:1-268
               
               
               Cow position:chrX:24105105-24105386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):123, 79

               
               
               Conread position:1-268
               
               
               Cow position:chrX:24280411-24280695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-268
               
               
               Cow position:chrX:24292202-24291922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):114, 178

               
               
               Conread position:1-268
               
               
               Cow position:chrX:24317544-24317826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):93, 27

               
               
               Conread position:1-268
               
               
               Cow position:chrX:24424924-24424633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:1-268
               
               
               Cow position:chrX:24447289-24447561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):178, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:24482892-24482611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-268
               
               
               Cow position:chrX:24735421-24735698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-268
               
               
               Cow position:chrX:24769383-24769100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:24788234-24787956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:1-268
               
               
               Cow position:chrX:25459161-25458877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):67, 107

               
               
               Conread position:1-268
               
               
               Cow position:chrX:26230039-26229747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):71, 118

               
               
               Conread position:1-268
               
               
               Cow position:chrX:26275615-26275899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):17, 107

               
               
               Conread position:1-268
               
               
               Cow position:chrX:27095596-27095879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-268
               
               
               Cow position:chrX:27422804-27422521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:27759184-27759467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:27977354-27977069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:1-268
               
               
               Cow position:chrX:27997128-27997410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):123, 44

               
               
               Conread position:1-268
               
               
               Cow position:chrX:28024740-28025023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-268
               
               
               Cow position:chrX:28588448-28588730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:28752863-28752580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:29225955-29226236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):123, 92

               
               
               Conread position:1-268
               
               
               Cow position:chrX:29841692-29841409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:29849154-29848871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:29915748-29915467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):112, 261

               
               
               Conread position:1-268
               
               
               Cow position:chrX:30133831-30133564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:30139307-30139024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):32, 38

               
               
               Conread position:1-268
               
               
               Cow position:chrX:30159518-30159251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:30172231-30171950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:30228637-30228351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):73, 110

               
               
               Conread position:1-268
               
               
               Cow position:chrX:30455145-30454862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):126, 174

               
               
               Conread position:1-268
               
               
               Cow position:chrX:30531551-30531272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:1-268
               
               
               Cow position:chrX:30688542-30688825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:30822993-30823275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:30940658-30940941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:31488991-31489272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:214
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):94, 14

               
               
               Conread position:1-268
               
               
               Cow position:chrX:31814412-31814129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:32144685-32144403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):85, 75

               
               
               Conread position:1-268
               
               
               Cow position:chrX:34222228-34222509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):121, 137

               
               
               Conread position:1-268
               
               
               Cow position:chrX:34990538-34990801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):122, 35

               
               
               Conread position:1-268
               
               
               Cow position:chrX:35240341-35240624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:35268372-35268650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):123, 80

               
               
               Conread position:1-268
               
               
               Cow position:chrX:35409151-35409428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):84, 75

               
               
               Conread position:1-268
               
               
               Cow position:chrX:35533328-35533611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:35609463-35609746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:1-268
               
               
               Cow position:chrX:36535258-36534975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:36729861-36730144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:36794471-36794754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:37134056-37133774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:1-268
               
               
               Cow position:chrX:37764720-37764437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:37772957-37772674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:38051955-38051672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:214
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-268
               
               
               Cow position:chrX:38151166-38151448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):123, 35

               
               
               Conread position:1-268
               
               
               Cow position:chrX:38227616-38227330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1-268
               
               
               Cow position:chrX:39185650-39185933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:39698804-39699086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:39714028-39714309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:39757510-39757793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:40224768-40224483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):43, 108

               
               
               Conread position:1-268
               
               
               Cow position:chrX:40268953-40269236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:40452743-40452453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:223
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:41156788-41157071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-268
               
               
               Cow position:chrX:41790959-41790680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):66, 110

               
               
               Conread position:1-268
               
               
               Cow position:chrX:41847057-41846774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):123, 95

               
               
               Conread position:1-268
               
               
               Cow position:chrX:44192965-44192683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):123, 35

               
               
               Conread position:1-268
               
               
               Cow position:chrX:45413172-45412893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):121, 107

               
               
               Conread position:1-268
               
               
               Cow position:chrX:46297137-46297420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-268
               
               
               Cow position:chrX:48310908-48310620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-269
               
               
               Cow position:chrX:4905513-4905228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):123, 175

               
               
               Conread position:1-269
               
               
               Cow position:chrX:5353826-5353542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):123, 113

               
               
               Conread position:1-269
               
               
               Cow position:chrX:7551326-7551034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):34, 121

               
               
               Conread position:1-269
               
               
               Cow position:chrX:10412493-10412225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):123, 32

               
               
               Conread position:1-269
               
               
               Cow position:chrX:11083133-11082852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:215
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):123, 90

               
               
               Conread position:1-269
               
               
               Cow position:chrX:15329130-15329414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-269
               
               
               Cow position:chrX:23572323-23572039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chrX:23969834-23970119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:1-269
               
               
               Cow position:chrX:26531436-26531719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):110, 136

               
               
               Conread position:1-269
               
               
               Cow position:chrX:27305406-27305687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):121, 36

               
               
               Conread position:1-269
               
               
               Cow position:chrX:27705070-27705354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chrX:29602563-29602284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-269
               
               
               Cow position:chrX:30143807-30143524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chrX:30180450-30180165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:1-269
               
               
               Cow position:chrX:31728940-31729219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 39

               
               
               Conread position:1-269
               
               
               Cow position:chrX:34543241-34543524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chrX:39292266-39291982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-269
               
               
               Cow position:chrX:39558888-39558606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):35, 26

               
               
               Conread position:1-269
               
               
               Cow position:chrX:40545145-40544849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:1-269
               
               
               Cow position:chrX:41879453-41879170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-270
               
               
               Cow position:chrX:6406823-6407107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):123, 89

               
               
               Conread position:1-270
               
               
               Cow position:chrX:8517081-8517370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-270
               
               
               Cow position:chrX:13058036-13058326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):124, 107

               
               
               Conread position:1-270
               
               
               Cow position:chrX:15718212-15717917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):39, 118

               
               
               Conread position:1-270
               
               
               Cow position:chrX:20726237-20726522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-270
               
               
               Cow position:chrX:22115807-22115520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 64

               
               
               Conread position:1-270
               
               
               Cow position:chrX:25575436-25575724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-270
               
               
               Cow position:chrX:38438965-38439235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):123, 75

               
               
               Conread position:1-270
               
               
               Cow position:chrX:42462272-42461986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-270
               
               
               Cow position:chrX:45430545-45430256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):101, 52

               
               
               Conread position:1-276
               
               
               Cow position:chrX:4750895-4750607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):123, 108

               
               
               Conread position:1-277
               
               
               Cow position:chrX:35025285-35025574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:216
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):193, 27

               
               
               Conread position:1-277
               
               
               Cow position:chrX:38963590-38963882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-284
               
               
               Cow position:chrX:878893-878592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:1-284
               
               
               Cow position:chrX:21592764-21593062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:222
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):122, 90

               
               
               Conread position:1-284
               
               
               Cow position:chrX:23135053-23135351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):67, 107

               
               
               Conread position:1-284
               
               
               Cow position:chrX:27446172-27446467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):189, 106

               
               
               Conread position:1-284
               
               
               Cow position:chrX:44054280-44054580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):41, 107

               
               
               Conread position:1-287
               
               
               Cow position:chrX:7424904-7425208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):126, 77

               
               
               Conread position:1-291
               
               
               Cow position:chrX:20131413-20131096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):33, 41

               
               
               Conread position:1-297
               
               
               Cow position:chrX:27772605-27772322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):122, 75

               
               
               Conread position:1-298
               
               
               Cow position:chrX:11855646-11855958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-303
               
               
               Cow position:chrX:19878510-19878832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):123, 107

               
               
               Conread position:1-303
               
               
               Cow position:chrX:33493209-33493525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-303
               
               
               Cow position:chrX:33589614-33589935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-303
               
               
               Cow position:chrX:35847693-35848012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 105

               
               
               Conread position:1-304
               
               
               Cow position:chrX:13785906-13785586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 286

               
               
               Conread position:1-304
               
               
               Cow position:chrX:33538404-33538721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-305
               
               
               Cow position:chrX:17230984-17231280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:1-306
               
               
               Cow position:chrX:28559357-28559036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:1-306
               
               
               Cow position:chrX:29049454-29049770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:233
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):123, 76

               
               
               Conread position:1-306
               
               
               Cow position:chrX:34441966-34441650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):123, 41

               
               
               Conread position:1-306
               
               
               Cow position:chrX:36975317-36975643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):33, 110

               
               
               Conread position:2-197
               
               
               Cow position:chrX:41527033-41526843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:2-265
               
               
               Cow position:chrX:22603960-22603682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):122, 66

               
               
               Conread position:2-268
               
               
               Cow position:chrX:2486152-2485871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-268
               
               
               Cow position:chrX:41103266-41103548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:212
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:2-303
               
               
               Cow position:chrX:21662573-21662893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 167

               
               
               Conread position:3-255
               
               
               Cow position:chrX:38961367-38961099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-260
               
               
               Cow position:chrX:29760166-29760451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):41, 116

               
               
               Conread position:3-264
               
               
               Cow position:chrX:9898861-9898586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-268
               
               
               Cow position:chrX:5280374-5280093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-268
               
               
               Cow position:chrX:5289208-5288927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:210
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-268
               
               
               Cow position:chrX:26760089-26759809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-268
               
               
               Cow position:chrX:35272845-35273104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):34, 96

               
               
               Conread position:3-283
               
               
               Cow position:chrX:46533041-46532741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:220
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:4-261
               
               
               Cow position:chrX:45658599-45658327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):126, 19

               
               
               Conread position:4-265
               
               
               Cow position:chrX:42470456-42470180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:204
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):120, 53

               
               
               Conread position:4-268
               
               
               Cow position:chrX:12465975-12466255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):120, 103

               
               
               Conread position:4-268
               
               
               Cow position:chrX:31949449-31949171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:208
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):120, 81

               
               
               Conread position:5-268
               
               
               Cow position:chrX:44930121-44930394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:5-270
               
               
               Cow position:chrX:40481389-40481111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):119, 102

               
               
               Conread position:6-268
               
               
               Cow position:chrX:27749527-27749249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):118, 101

               
               
               Conread position:7-268
               
               
               Cow position:chrX:29780228-29780505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):117, 100

               
               
               Conread position:10-265
               
               
               Cow position:chrX:33803535-33803259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):114, 97

               
               
               Conread position:11-269
               
               
               Cow position:chrX:19929917-19930191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):113, 19

               
               
               Conread position:11-282
               
               
               Cow position:chrX:27443074-27442776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:12-277
               
               
               Cow position:chrX:30093876-30093594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):111, 95

               
               
               Conread position:15-265
               
               
               Cow position:chrX:42994114-42994371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:198
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):175, 49

               
               
               Conread position:15-268
               
               
               Cow position:chrX:671518-671249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):65, 50

               
               
               Conread position:15-268
               
               
               Cow position:chrX:3569942-3570211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):108, 92

               
               
               Conread position:16-269
               
               
               Cow position:chrX:25337694-25337938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):108, 22

               
               
               Conread position:16-302
               
               
               Cow position:chrX:28624267-28623964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):99, 91

               
               
               Conread position:17-189
               
               
               Cow position:chrX:32743038-32743205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):16, 22

               
               
               Conread position:18-264
               
               
               Cow position:chrX:24441756-24441491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):106, 89

               
               
               Conread position:19-268
               
               
               Cow position:chrX:14133972-14134235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):105, 18

               
               
               Conread position:20-257
               
               
               Cow position:chrX:5871813-5872065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):168, 87

               
               
               Conread position:20-303
               
               
               Cow position:chrX:39352159-39351853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):105, 87

               
               
               Conread position:21-264
               
               
               Cow position:chrX:2351559-2351818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):103, 86

               
               
               Conread position:21-265
               
               
               Cow position:chrX:6695853-6695588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):103, 87

               
               
               Conread position:21-265
               
               
               Cow position:chrX:38940873-38941134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):66, 87

               
               
               Conread position:21-268
               
               
               Cow position:chrX:3387603-3387866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):103, 86

               
               
               Conread position:21-268
               
               
               Cow position:chrX:27105754-27106018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):24, 94

               
               
               Conread position:21-268
               
               
               Cow position:chrX:38934751-38935015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):66, 87

               
               
               Conread position:22-264
               
               
               Cow position:chrX:45786628-45786886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):102, 85

               
               
               Conread position:22-268
               
               
               Cow position:chrX:8869887-8869624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):102, 85

               
               
               Conread position:23-268
               
               
               Cow position:chrX:22077826-22078087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):101, 84

               
               
               Conread position:23-268
               
               
               Cow position:chrX:34754693-34754432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):107, 75

               
               
               Conread position:23-270
               
               
               Cow position:chrX:31745998-31745735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):101, 84

               
               
               Conread position:25-188
               
               
               Cow position:chrX:31251766-31251931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):98, 82

               
               
               Conread position:28-263
               
               
               Cow position:chrX:37572668-37572919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):97, 79

               
               
               Conread position:28-268
               
               
               Cow position:chrX:23121887-23122144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):96, 223

               
               
               Conread position:28-276
               
               
               Cow position:chrX:12437728-12437467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):95, 22

               
               
               Conread position:29-269
               
               
               Cow position:chrX:12115546-12115802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):95, 78

               
               
               Conread position:29-270
               
               
               Cow position:chrX:21862165-21861913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:193
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):95, 78

               
               
               Conread position:29-305
               
               
               Cow position:chrX:40279307-40279593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):95, 78

               
               
               Conread position:34-264
               
               
               Cow position:chrX:47243795-47243547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:35-265
               
               
               Cow position:chrX:13648273-13648027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):89, 72

               
               
               Conread position:35-270
               
               
               Cow position:chrX:29864920-29864669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):89, 79

               
               
               Conread position:36-305
               
               
               Cow position:chrX:38840362-38840647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):88, 8

               
               
               Conread position:38-177
               
               
               Cow position:chrX:29937533-29937673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):86, 26

               
               
               Conread position:38-262
               
               
               Cow position:chrX:34238234-34238475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):86, 69

               
               
               Conread position:41-264
               
               
               Cow position:chrX:27760858-27761096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):86, 66

               
               
               Conread position:41-265
               
               
               Cow position:chrX:2185747-2185984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):83, 50

               
               
               Conread position:41-268
               
               
               Cow position:chrX:32094934-32094690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:41-295
               
               
               Cow position:chrX:12980830-12980561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:202
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):83, 66

               
               
               Conread position:42-187
               
               
               Cow position:chrX:18215449-18215597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):82, 65

               
               
               Conread position:43-188
               
               
               Cow position:chrX:6235138-6234991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):81, 65

               
               
               Conread position:43-284
               
               
               Cow position:chrX:31385236-31385494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):80, 256

               
               
               Conread position:45-303
               
               
               Cow position:chrX:42381908-42381632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):63, 99

               
               
               Conread position:46-269
               
               
               Cow position:chrX:18695403-18695160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):59, 30

               
               
               Conread position:48-269
               
               
               Cow position:chrX:48287907-48287679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):76, 59

               
               
               Conread position:49-268
               
               
               Cow position:chrX:47654829-47655064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):75, 58

               
               
               Conread position:49-284
               
               
               Cow position:chrX:13868230-13868473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):142, 68

               
               
               Conread position:50-265
               
               
               Cow position:chrX:21833410-21833642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:52-265
               
               
               Cow position:chrX:27516065-27516290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):70, 11

               
               
               Conread position:54-260
               
               
               Cow position:chrX:40180341-40180118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:57-293
               
               
               Cow position:chrX:32128461-32128210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):67, 50

               
               
               Conread position:58-268
               
               
               Cow position:chrX:30162544-30162757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):67, 33

               
               
               Conread position:62-303
               
               
               Cow position:chrX:25163331-25163589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):61, 45

               
               
               Conread position:64-268
               
               
               Cow position:chrX:27019745-27019963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):60, 44

               
               
               Conread position:64-268
               
               
               Cow position:chrX:34413316-34413536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):60, 43

               
               
               Conread position:67-268
               
               
               Cow position:chrX:8899568-8899784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):57, 40

               
               
               Conread position:77-269
               
               
               Cow position:chrX:21666038-21665832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):37, 182

               
               
               Conread position:78-268
               
               
               Cow position:chrX:42222014-42221808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):46, 30

               
               
               Conread position:78-269
               
               
               Cow position:chrX:38094971-38094764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):46, 29

               
               
               Conread position:79-254
               
               
               Cow position:chrX:10438096-10437904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):45, 28

               
               
               Conread position:86-265
               
               
               Cow position:chrX:12096684-12096490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):38, 21

               
               
               Conread position:94-268
               
               
               Cow position:chrX:26441210-26441020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):30, 13

               
               
               Conread position:102-299
               
               
               Cow position:chrX:32419767-32419978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):22, 8

               
               
               Conread position:110-268
               
               
               Cow position:chrX:11581522-11581694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):13, 138