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Cow genome map

           
Conread name:
           
Pig4-TMW8026F11
        

               
Conread position:
               
96-499
               

               
Cow position:
               
chr1:52487546-52487951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
304, 346
               

               
Conread position:
               
259-484
               

               
Cow position:
               
chr1:60045257-60045029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
12, 96
               

               
Conread position:
               
275-470
               

               
Cow position:
               
chr1:12090594-12090402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
88, 21
               

               
Conread position:
               
276-499
               

               
Cow position:
               
chr1:4582803-4582580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
87, 18
               

               
Conread position:
               
277-499
               

               
Cow position:
               
chr1:48581367-48581158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
139, 9
               

               
Conread position:
               
279-499
               

               
Cow position:
               
chr1:38706594-38706825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
54, 147
               

               
Conread position:
               
280-486
               

               
Cow position:
               
chr1:102266022-102266226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
41, 72
               

               
Conread position:
               
281-492
               

               
Cow position:
               
chr1:25956153-25955931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
11, 53
               

               
Conread position:
               
282-473
               

               
Cow position:
               
chr1:95828880-95829078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
50, 36
               

               
Conread position:
               
284-493
               

               
Cow position:
               
chr1:62852478-62852690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
45, 11
               

               
Conread position:
               
286-482
               

               
Cow position:
               
chr1:29935142-29935342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
85, 46
               

               
Conread position:
               
288-470
               

               
Cow position:
               
chr1:39095736-39095546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
11, 116
               

               
Conread position:
               
288-499
               

               
Cow position:
               
chr1:34160076-34159864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
85, 18
               

               
Conread position:
               
290-484
               

               
Cow position:
               
chr1:196758-196961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
19, 130
               

               
Conread position:
               
293-473
               

               
Cow position:
               
chr1:86110499-86110689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
293-495
               

               
Cow position:
               
chr1:84787503-84787303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
130, 14
               

               
Conread position:
               
295-486
               

               
Cow position:
               
chr1:43311531-43311730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
60, 37
               

               
Conread position:
               
295-499
               

               
Cow position:
               
chr1:67529301-67529084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
296-497
               

               
Cow position:
               
chr1:38419264-38419054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
68, 30
               

               
Conread position:
               
297-498
               

               
Cow position:
               
chr1:32014427-32014226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
67, 30
               

               
Conread position:
               
297-498
               

               
Cow position:
               
chr1:84103830-84104031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
100, 30
               

               
Conread position:
               
300-478
               

               
Cow position:
               
chr1:81615886-81615704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
63, 34
               

               
Conread position:
               
300-494
               

               
Cow position:
               
chr1:41022654-41022453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
28, 111
               

               
Conread position:
               
303-497
               

               
Cow position:
               
chr1:53623180-53622987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
30, 50
               

               
Conread position:
               
304-499
               

               
Cow position:
               
chr1:7748448-7748242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
55, 30
               

               
Conread position:
               
304-499
               

               
Cow position:
               
chr1:7752612-7752408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
55, 30
               

               
Conread position:
               
304-501
               

               
Cow position:
               
chr1:11913650-11913851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
58, 28
               

               
Conread position:
               
306-498
               

               
Cow position:
               
chr1:97611441-97611631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
11, 91
               

               
Conread position:
               
310-483
               

               
Cow position:
               
chr1:56225694-56225514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
17, 92
               

               
Conread position:
               
310-498
               

               
Cow position:
               
chr1:82880858-82880675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
116, 64
               

               
Conread position:
               
310-499
               

               
Cow position:
               
chr1:22461020-22461209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
34, 52
               

               
Conread position:
               
311-484
               

               
Cow position:
               
chr1:98556892-98557075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
312-493
               

               
Cow position:
               
chr1:78857111-78857294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
21, 39
               

               
Conread position:
               
312-499
               

               
Cow position:
               
chr1:36688155-36688349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
48, 131
               

               
Conread position:
               
312-499
               

               
Cow position:
               
chr1:95153101-95152900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
313-484
               

               
Cow position:
               
chr1:93590367-93590542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
50, 21
               

               
Conread position:
               
313-493
               

               
Cow position:
               
chr1:45449517-45449337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
12, 39
               

               
Conread position:
               
313-499
               

               
Cow position:
               
chr1:15875883-15875689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
48, 103
               

               
Conread position:
               
313-499
               

               
Cow position:
               
chr1:89297884-89298081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
47, 23
               

               
Conread position:
               
313-499
               

               
Cow position:
               
chr1:89301493-89301690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
47, 23
               

               
Conread position:
               
313-499
               

               
Cow position:
               
chr1:96081703-96081509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
30, 150
               

               
Conread position:
               
314-467
               

               
Cow position:
               
chr1:84238897-84239062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
314-479
               

               
Cow position:
               
chr1:102768400-102768226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
314-484
               

               
Cow position:
               
chr1:91065935-91066107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
47, 20
               

               
Conread position:
               
314-491
               

               
Cow position:
               
chr1:13414246-13414060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
23, 69
               

               
Conread position:
               
314-492
               

               
Cow position:
               
chr1:96599077-96599256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 117
               

               
Conread position:
               
314-493
               

               
Cow position:
               
chr1:42292141-42291960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
314-493
               

               
Cow position:
               
chr1:82917259-82917440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
314-493
               

               
Cow position:
               
chr1:101855806-101855988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
314-495
               

               
Cow position:
               
chr1:101835039-101834848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
314-497
               

               
Cow position:
               
chr1:45873858-45874039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
61, 34
               

               
Conread position:
               
314-498
               

               
Cow position:
               
chr1:46031185-46030989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
22, 130
               

               
Conread position:
               
314-499
               

               
Cow position:
               
chr1:53403003-53402810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
314-500
               

               
Cow position:
               
chr1:101632130-101632308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
112, 18
               

               
Conread position:
               
314-503
               

               
Cow position:
               
chr1:40078013-40077819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
46, 104
               

               
Conread position:
               
314-504
               

               
Cow position:
               
chr1:70416536-70416736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
16, 103
               

               
Conread position:
               
316-465
               

               
Cow position:
               
chr1:186061-186218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
87, 11
               

               
Conread position:
               
316-499
               

               
Cow position:
               
chr1:42797094-42796906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
21, 48
               

               
Conread position:
               
316-499
               

               
Cow position:
               
chr1:55428733-55428927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
48, 11
               

               
Conread position:
               
317-499
               

               
Cow position:
               
chr1:39683922-39684115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
43, 141
               

               
Conread position:
               
317-499
               

               
Cow position:
               
chr1:76518634-76518451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
90, 26
               

               
Conread position:
               
318-470
               

               
Cow position:
               
chr1:87220663-87220513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
15, 80
               

               
Conread position:
               
318-476
               

               
Cow position:
               
chr1:1605922-1606084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
15, 31
               

               
Conread position:
               
318-490
               

               
Cow position:
               
chr1:70483116-70483296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
44, 87
               

               
Conread position:
               
318-493
               

               
Cow position:
               
chr1:36018565-36018748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
46, 34
               

               
Conread position:
               
318-498
               

               
Cow position:
               
chr1:20667531-20667712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
44, 86
               

               
Conread position:
               
318-498
               

               
Cow position:
               
chr1:88231547-88231735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
318-499
               

               
Cow position:
               
chr1:87095002-87095185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
20, 33
               

               
Conread position:
               
318-499
               

               
Cow position:
               
chr1:101507568-101507389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
107, 16
               

               
Conread position:
               
318-500
               

               
Cow position:
               
chr1:10778773-10778592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
46, 84
               

               
Conread position:
               
319-442
               

               
Cow position:
               
chr1:49711064-49710941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
10, 92
               

               
Conread position:
               
320-482
               

               
Cow position:
               
chr1:1956123-1956288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
32, 12
               

               
Conread position:
               
320-496
               

               
Cow position:
               
chr1:18936630-18936805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
13, 29
               

               
Conread position:
               
320-501
               

               
Cow position:
               
chr1:22231865-22231675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
44, 10
               

               
Conread position:
               
321-499
               

               
Cow position:
               
chr1:33206657-33206852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
322-480
               

               
Cow position:
               
chr1:3666820-3666983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
42, 10
               

               
Conread position:
               
322-499
               

               
Cow position:
               
chr1:54156519-54156705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
42, 97
               

               
Conread position:
               
322-499
               

               
Cow position:
               
chr1:73020449-73020633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
41, 10
               

               
Conread position:
               
322-499
               

               
Cow position:
               
chr1:82505208-82505034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
83, 106
               

               
Conread position:
               
323-492
               

               
Cow position:
               
chr1:2462585-2462412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
45, 91
               

               
Conread position:
               
323-495
               

               
Cow position:
               
chr1:50843641-50843819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
327-478
               

               
Cow position:
               
chr1:54645633-54645477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
327-490
               

               
Cow position:
               
chr1:102648490-102648316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
37, 85
               

               
Conread position:
               
327-493
               

               
Cow position:
               
chr1:96932467-96932308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
99, 67
               

               
Conread position:
               
327-498
               

               
Cow position:
               
chr1:63461088-63460908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
327-499
               

               
Cow position:
               
chr1:88360095-88359907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
327-499
               

               
Cow position:
               
chr1:100474449-100474263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
327-503
               

               
Cow position:
               
chr1:34771289-34771478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
327-503
               

               
Cow position:
               
chr1:100800558-100800744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
11, 82
               

               
Conread position:
               
328-486
               

               
Cow position:
               
chr1:46172814-46172647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
329-503
               

               
Cow position:
               
chr1:22192978-22192794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
35, 71
               

               
Conread position:
               
332-493
               

               
Cow position:
               
chr1:23332710-23332869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
72, 56
               

               
Conread position:
               
332-493
               

               
Cow position:
               
chr1:101151754-101151592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
332-498
               

               
Cow position:
               
chr1:6031826-6031654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
334-493
               

               
Cow position:
               
chr1:75745063-75744897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
334-495
               

               
Cow position:
               
chr1:42868747-42868907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
29, 43
               

               
Conread position:
               
334-499
               

               
Cow position:
               
chr1:32035511-32035681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
29, 80
               

               
Conread position:
               
334-499
               

               
Cow position:
               
chr1:69694804-69694964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
89, 59
               

               
Conread position:
               
334-503
               

               
Cow position:
               
chr1:59675797-59675626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
92, 130
               

               
Conread position:
               
335-486
               

               
Cow position:
               
chr1:69411493-69411655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
335-493
               

               
Cow position:
               
chr1:97125122-97124964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
90, 70
               

               
Conread position:
               
335-496
               

               
Cow position:
               
chr1:100513099-100512926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
335-504
               

               
Cow position:
               
chr1:1802367-1802191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
336-493
               

               
Cow position:
               
chr1:91810937-91810781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
90, 66
               

               
Conread position:
               
336-499
               

               
Cow position:
               
chr1:6381977-6381801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
25, 126
               

               
Conread position:
               
336-499
               

               
Cow position:
               
chr1:65318778-65318604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
336-499
               

               
Cow position:
               
chr1:73721565-73721389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
336-501
               

               
Cow position:
               
chr1:53521106-53520938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
87, 60
               

               
Conread position:
               
337-491
               

               
Cow position:
               
chr1:63212059-63212222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
24, 122
               

               
Conread position:
               
337-495
               

               
Cow position:
               
chr1:55357089-55357262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
337-496
               

               
Cow position:
               
chr1:50930791-50930947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
89, 13
               

               
Conread position:
               
338-477
               

               
Cow position:
               
chr1:51064963-51065102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
66, 44
               

               
Conread position:
               
338-499
               

               
Cow position:
               
chr1:72813817-72813645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
338-499
               

               
Cow position:
               
chr1:83606257-83606421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
343-498
               

               
Cow position:
               
chr1:81638733-81638577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
20, 58
               

               
Conread position:
               
346-493
               

               
Cow position:
               
chr1:100376005-100375857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
350-496
               

               
Cow position:
               
chr1:24534083-24534225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
76, 47
               

               
Conread position:
               
355-490
               

               
Cow position:
               
chr1:40160541-40160677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
358-493
               

               
Cow position:
               
chr1:93385246-93385110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
360-481
               

               
Cow position:
               
chr1:99629330-99629211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
360-495
               

               
Cow position:
               
chr1:15334056-15333924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
68, 43
               

               
Conread position:
               
360-495
               

               
Cow position:
               
chr1:82337613-82337747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
66, 50
               

               
Conread position:
               
360-499
               

               
Cow position:
               
chr1:11729339-11729204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
66, 25
               

               
Conread position:
               
360-499
               

               
Cow position:
               
chr1:23373029-23372888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
28, 57
               

               
Conread position:
               
360-499
               

               
Cow position:
               
chr1:31630115-31630258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
360-499
               

               
Cow position:
               
chr1:38277858-38277999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
360-499
               

               
Cow position:
               
chr1:49433093-49433235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
360-499
               

               
Cow position:
               
chr1:54258737-54258596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
47, 103
               

               
Conread position:
               
360-499
               

               
Cow position:
               
chr1:54569869-54569727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
360-499
               

               
Cow position:
               
chr1:70146740-70146882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
360-499
               

               
Cow position:
               
chr1:92996718-92996862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
360-499
               

               
Cow position:
               
chr1:99642201-99642340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
62, 51
               

               
Conread position:
               
360-500
               

               
Cow position:
               
chr1:2972088-2971945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
360-504
               

               
Cow position:
               
chr1:61011343-61011205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
66, 31
               

               
Conread position:
               
360-558
               

               
Cow position:
               
chr1:47886312-47886508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
72, 38
               

               
Conread position:
               
361-497
               

               
Cow position:
               
chr1:6941633-6941499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
57, 39
               

               
Conread position:
               
361-497
               

               
Cow position:
               
chr1:22730900-22730765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
361-523
               

               
Cow position:
               
chr1:6959046-6958886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
57, 39
               

               
Conread position:
               
371-484
               

               
Cow position:
               
chr1:17196468-17196583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
371-487
               

               
Cow position:
               
chr1:101280580-101280697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
371-499
               

               
Cow position:
               
chr1:73494434-73494567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
389-494
               

               
Cow position:
               
chr1:68672462-68672568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
389-499
               

               
Cow position:
               
chr1:65909650-65909540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
389-503
               

               
Cow position:
               
chr1:99024091-99024206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
391-499
               

               
Cow position:
               
chr1:84768741-84768850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
391-502
               

               
Cow position:
               
chr1:78697635-78697746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
35, 10
               

               
Conread position:
               
394-499
               

               
Cow position:
               
chr1:54157431-54157325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
278-504
               

               
Cow position:
               
chr10:37014864-37014628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
15, 37
               

               
Conread position:
               
279-459
               

               
Cow position:
               
chr10:46607577-46607760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
45, 72
               

               
Conread position:
               
279-499
               

               
Cow position:
               
chr10:7291588-7291808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
85, 55
               

               
Conread position:
               
284-504
               

               
Cow position:
               
chr10:52296720-52296489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
286-484
               

               
Cow position:
               
chr10:58043908-58044114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
78, 30
               

               
Conread position:
               
289-503
               

               
Cow position:
               
chr10:23478727-23478934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
137, 28
               

               
Conread position:
               
289-510
               

               
Cow position:
               
chr10:39124353-39124122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
20, 5
               

               
Conread position:
               
290-501
               

               
Cow position:
               
chr10:35486225-35486441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
42, 24
               

               
Conread position:
               
293-499
               

               
Cow position:
               
chr10:23379343-23379133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
10, 19
               

               
Conread position:
               
295-499
               

               
Cow position:
               
chr10:17447999-17448199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
8, 49
               

               
Conread position:
               
296-493
               

               
Cow position:
               
chr10:51740697-51740500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
49, 18
               

               
Conread position:
               
299-500
               

               
Cow position:
               
chr10:13586910-13586703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
98, 14
               

               
Conread position:
               
299-503
               

               
Cow position:
               
chr10:22972795-22973010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
300-493
               

               
Cow position:
               
chr10:22797809-22798005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
9, 106
               

               
Conread position:
               
300-495
               

               
Cow position:
               
chr10:38195776-38195973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
14, 52
               

               
Conread position:
               
301-499
               

               
Cow position:
               
chr10:62277118-62277330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
23, 7
               

               
Conread position:
               
307-499
               

               
Cow position:
               
chr10:9959417-9959215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
57, 29
               

               
Conread position:
               
309-493
               

               
Cow position:
               
chr10:27258939-27259125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
309-499
               

               
Cow position:
               
chr10:47543271-47543075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
310-498
               

               
Cow position:
               
chr10:19503083-19503284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
310-499
               

               
Cow position:
               
chr10:48316120-48316309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
27, 101
               

               
Conread position:
               
311-499
               

               
Cow position:
               
chr10:24871365-24871164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
53, 7
               

               
Conread position:
               
312-484
               

               
Cow position:
               
chr10:9656333-9656508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
52, 25
               

               
Conread position:
               
312-490
               

               
Cow position:
               
chr10:48347898-48347714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
51, 18
               

               
Conread position:
               
312-491
               

               
Cow position:
               
chr10:66128045-66127858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
313-480
               

               
Cow position:
               
chr10:32799074-32799240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
77, 37
               

               
Conread position:
               
313-486
               

               
Cow position:
               
chr10:6555627-6555793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
313-493
               

               
Cow position:
               
chr10:59853919-59853738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
314-483
               

               
Cow position:
               
chr10:61171448-61171273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
46, 23
               

               
Conread position:
               
314-484
               

               
Cow position:
               
chr10:26008-25838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
111, 93
               

               
Conread position:
               
314-484
               

               
Cow position:
               
chr10:62781236-62781064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
314-495
               

               
Cow position:
               
chr10:50050088-50049908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
50, 27
               

               
Conread position:
               
314-499
               

               
Cow position:
               
chr10:16598881-16598688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
48, 16
               

               
Conread position:
               
314-499
               

               
Cow position:
               
chr10:16645000-16645187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
10, 38
               

               
Conread position:
               
314-499
               

               
Cow position:
               
chr10:19539632-19539823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
51, 28
               

               
Conread position:
               
314-499
               

               
Cow position:
               
chr10:22980787-22980979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
47, 91
               

               
Conread position:
               
314-499
               

               
Cow position:
               
chr10:47159398-47159214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
49, 89
               

               
Conread position:
               
314-500
               

               
Cow position:
               
chr10:13927916-13927733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
59, 44
               

               
Conread position:
               
314-500
               

               
Cow position:
               
chr10:24830888-24831084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
80, 16
               

               
Conread position:
               
314-503
               

               
Cow position:
               
chr10:16417416-16417604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
112, 72
               

               
Conread position:
               
314-503
               

               
Cow position:
               
chr10:61146740-61146539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
46, 20
               

               
Conread position:
               
315-490
               

               
Cow position:
               
chr10:64285620-64285786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
113, 12
               

               
Conread position:
               
316-494
               

               
Cow position:
               
chr10:69934593-69934777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
47, 20
               

               
Conread position:
               
316-499
               

               
Cow position:
               
chr10:39258312-39258495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
84, 16
               

               
Conread position:
               
316-499
               

               
Cow position:
               
chr10:58638195-58638013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
49, 11
               

               
Conread position:
               
317-492
               

               
Cow position:
               
chr10:52152990-52152801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
317-495
               

               
Cow position:
               
chr10:9797720-9797907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
317-495
               

               
Cow position:
               
chr10:30261427-30261603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
21, 41
               

               
Conread position:
               
317-499
               

               
Cow position:
               
chr10:49846965-49846774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
318-477
               

               
Cow position:
               
chr10:35017930-35017754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
318-484
               

               
Cow position:
               
chr10:15817609-15817779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
44, 89
               

               
Conread position:
               
318-496
               

               
Cow position:
               
chr10:6516892-6516697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
318-498
               

               
Cow position:
               
chr10:20485371-20485559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
43, 74
               

               
Conread position:
               
318-498
               

               
Cow position:
               
chr10:26631582-26631409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
40, 80
               

               
Conread position:
               
319-465
               

               
Cow position:
               
chr10:46683580-46683429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
74, 17
               

               
Conread position:
               
319-484
               

               
Cow position:
               
chr10:48407321-48407152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
319-487
               

               
Cow position:
               
chr10:57095017-57095189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
43, 89
               

               
Conread position:
               
319-499
               

               
Cow position:
               
chr10:2849517-2849349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
107, 47
               

               
Conread position:
               
319-499
               

               
Cow position:
               
chr10:3986076-3985889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
42, 13
               

               
Conread position:
               
319-499
               

               
Cow position:
               
chr10:28843548-28843357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
319-524
               

               
Cow position:
               
chr10:15601990-15602207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
320-493
               

               
Cow position:
               
chr10:36319507-36319678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
102, 26
               

               
Conread position:
               
320-498
               

               
Cow position:
               
chr10:64042271-64042084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
44, 129
               

               
Conread position:
               
320-499
               

               
Cow position:
               
chr10:4184390-4184195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
320-499
               

               
Cow position:
               
chr10:39410986-39410806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
40, 30
               

               
Conread position:
               
320-499
               

               
Cow position:
               
chr10:52881433-52881619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
43, 10
               

               
Conread position:
               
321-495
               

               
Cow position:
               
chr10:1976143-1976314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
102, 15
               

               
Conread position:
               
321-499
               

               
Cow position:
               
chr10:7309263-7309453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
321-499
               

               
Cow position:
               
chr10:21528975-21528787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
42, 9
               

               
Conread position:
               
321-499
               

               
Cow position:
               
chr10:21546349-21546161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
42, 17
               

               
Conread position:
               
321-499
               

               
Cow position:
               
chr10:58148984-58149170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
40, 87
               

               
Conread position:
               
322-492
               

               
Cow position:
               
chr10:46754758-46754596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
322-499
               

               
Cow position:
               
chr10:6531981-6532159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
41, 70
               

               
Conread position:
               
322-499
               

               
Cow position:
               
chr10:46228866-46228688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
66, 8
               

               
Conread position:
               
323-484
               

               
Cow position:
               
chr10:25466246-25466081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
323-490
               

               
Cow position:
               
chr10:15570384-15570217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
103, 92
               

               
Conread position:
               
323-491
               

               
Cow position:
               
chr10:20553363-20553192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
40, 80
               

               
Conread position:
               
323-492
               

               
Cow position:
               
chr10:29166464-29166279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
327-496
               

               
Cow position:
               
chr10:15871711-15871869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
99, 28
               

               
Conread position:
               
327-499
               

               
Cow position:
               
chr10:30787445-30787628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
334-484
               

               
Cow position:
               
chr10:27544625-27544467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
27, 80
               

               
Conread position:
               
334-493
               

               
Cow position:
               
chr10:10476531-10476691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
334-493
               

               
Cow position:
               
chr10:41162813-41162974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
334-493
               

               
Cow position:
               
chr10:64198884-64198725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
94, 112
               

               
Conread position:
               
334-495
               

               
Cow position:
               
chr10:37971935-37971772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
27, 57
               

               
Conread position:
               
334-499
               

               
Cow position:
               
chr10:10634385-10634218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
19, 73
               

               
Conread position:
               
334-499
               

               
Cow position:
               
chr10:17844938-17844766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
30, 77
               

               
Conread position:
               
334-499
               

               
Cow position:
               
chr10:36855954-36856132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
334-502
               

               
Cow position:
               
chr10:282371-282202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
334-502
               

               
Cow position:
               
chr10:23506316-23506494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
30, 143
               

               
Conread position:
               
336-477
               

               
Cow position:
               
chr10:69611712-69611571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
55, 38
               

               
Conread position:
               
336-484
               

               
Cow position:
               
chr10:39387619-39387468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
25, 70
               

               
Conread position:
               
336-495
               

               
Cow position:
               
chr10:50533707-50533865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
28, 55
               

               
Conread position:
               
336-497
               

               
Cow position:
               
chr10:12253265-12253428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
26, 54
               

               
Conread position:
               
336-499
               

               
Cow position:
               
chr10:6664201-6664033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
27, 73
               

               
Conread position:
               
337-499
               

               
Cow position:
               
chr10:18042352-18042179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
338-456
               

               
Cow position:
               
chr10:991842-991961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
339-493
               

               
Cow position:
               
chr10:36775194-36775349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
343-499
               

               
Cow position:
               
chr10:23127821-23127987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
360-491
               

               
Cow position:
               
chr10:49168890-49169027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
48, 21
               

               
Conread position:
               
360-499
               

               
Cow position:
               
chr10:19372197-19372337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
360-499
               

               
Cow position:
               
chr10:46043132-46042993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
47, 97
               

               
Conread position:
               
360-499
               

               
Cow position:
               
chr10:61982528-61982385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
360-501
               

               
Cow position:
               
chr10:30836894-30837039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
361-499
               

               
Cow position:
               
chr10:54699568-54699706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
115, 61
               

               
Conread position:
               
371-495
               

               
Cow position:
               
chr10:54848904-54848781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
61, 31
               

               
Conread position:
               
379-493
               

               
Cow position:
               
chr10:34687203-34687088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
389-495
               

               
Cow position:
               
chr10:24375654-24375548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
37, 84
               

               
Conread position:
               
389-499
               

               
Cow position:
               
chr10:13158224-13158112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
389-499
               

               
Cow position:
               
chr10:13316051-13315938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
220-505
               

               
Cow position:
               
chr11:2084434-2084143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
24, 73
               

               
Conread position:
               
252-499
               

               
Cow position:
               
chr11:44176859-44176602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
14, 32
               

               
Conread position:
               
268-503
               

               
Cow position:
               
chr11:51627244-51626999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
101, 24
               

               
Conread position:
               
273-493
               

               
Cow position:
               
chr11:33369395-33369162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
36, 65
               

               
Conread position:
               
273-499
               

               
Cow position:
               
chr11:77745013-77745246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
49, 91
               

               
Conread position:
               
274-498
               

               
Cow position:
               
chr11:84385399-84385633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
279-498
               

               
Cow position:
               
chr11:31994303-31994081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
58, 15
               

               
Conread position:
               
281-500
               

               
Cow position:
               
chr11:30476229-30475999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
22, 5
               

               
Conread position:
               
283-480
               

               
Cow position:
               
chr11:62102212-62102423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
284-499
               

               
Cow position:
               
chr11:13500247-13500021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
19, 123
               

               
Conread position:
               
289-499
               

               
Cow position:
               
chr11:18508805-18509025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
291-502
               

               
Cow position:
               
chr11:17278458-17278672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
35, 47
               

               
Conread position:
               
292-503
               

               
Cow position:
               
chr11:35924274-35924062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
41, 21
               

               
Conread position:
               
293-490
               

               
Cow position:
               
chr11:68570169-68570366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
40, 67
               

               
Conread position:
               
295-499
               

               
Cow position:
               
chr11:43914513-43914297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
296-484
               

               
Cow position:
               
chr11:32800837-32800646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
30, 65
               

               
Conread position:
               
296-493
               

               
Cow position:
               
chr11:33414448-33414248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
14, 77
               

               
Conread position:
               
299-493
               

               
Cow position:
               
chr11:30797341-30797149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
27, 36
               

               
Conread position:
               
300-484
               

               
Cow position:
               
chr11:44032220-44032032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
63, 14
               

               
Conread position:
               
300-497
               

               
Cow position:
               
chr11:70756678-70756485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
33, 18
               

               
Conread position:
               
303-499
               

               
Cow position:
               
chr11:81614315-81614508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
105, 27
               

               
Conread position:
               
303-501
               

               
Cow position:
               
chr11:4662851-4663043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
304-493
               

               
Cow position:
               
chr11:6413496-6413687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
304-493
               

               
Cow position:
               
chr11:27688188-27688379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
22, 42
               

               
Conread position:
               
305-494
               

               
Cow position:
               
chr11:30172510-30172315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
34, 102
               

               
Conread position:
               
305-499
               

               
Cow position:
               
chr11:58186084-58185888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
21, 106
               

               
Conread position:
               
309-499
               

               
Cow position:
               
chr11:36092713-36092911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
52, 77
               

               
Conread position:
               
310-469
               

               
Cow position:
               
chr11:28078693-28078529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
49, 17
               

               
Conread position:
               
310-487
               

               
Cow position:
               
chr11:76896172-76896357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
54, 16
               

               
Conread position:
               
312-468
               

               
Cow position:
               
chr11:7928878-7928710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
52, 23
               

               
Conread position:
               
312-484
               

               
Cow position:
               
chr11:18209991-18210153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
312-495
               

               
Cow position:
               
chr11:36112612-36112429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
114, 103
               

               
Conread position:
               
312-499
               

               
Cow position:
               
chr11:31228156-31227968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
60, 43
               

               
Conread position:
               
312-499
               

               
Cow position:
               
chr11:39462815-39462629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
11, 51
               

               
Conread position:
               
312-504
               

               
Cow position:
               
chr11:33347997-33348186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
50, 24
               

               
Conread position:
               
312-504
               

               
Cow position:
               
chr11:60493542-60493737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
71, 106
               

               
Conread position:
               
313-490
               

               
Cow position:
               
chr11:35212970-35213153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
57, 23
               

               
Conread position:
               
314-480
               

               
Cow position:
               
chr11:17517599-17517423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
49, 13
               

               
Conread position:
               
314-484
               

               
Cow position:
               
chr11:372512-372684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
21, 134
               

               
Conread position:
               
314-490
               

               
Cow position:
               
chr11:8264429-8264608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
11, 52
               

               
Conread position:
               
314-490
               

               
Cow position:
               
chr11:8521016-8520838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
314-493
               

               
Cow position:
               
chr11:3175871-3175685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
11, 94
               

               
Conread position:
               
314-495
               

               
Cow position:
               
chr11:19549677-19549490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
46, 154
               

               
Conread position:
               
314-499
               

               
Cow position:
               
chr11:62811497-62811303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
47, 146
               

               
Conread position:
               
315-495
               

               
Cow position:
               
chr11:47110455-47110258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
49, 17
               

               
Conread position:
               
316-498
               

               
Cow position:
               
chr11:19147944-19148130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
43, 11
               

               
Conread position:
               
316-499
               

               
Cow position:
               
chr11:26143902-26144090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
48, 16
               

               
Conread position:
               
316-499
               

               
Cow position:
               
chr11:66188124-66188311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
45, 16
               

               
Conread position:
               
316-499
               

               
Cow position:
               
chr11:67804936-67804755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
37, 139
               

               
Conread position:
               
316-500
               

               
Cow position:
               
chr11:23278763-23278960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
13, 73
               

               
Conread position:
               
317-479
               

               
Cow position:
               
chr11:19578132-19577967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
318-490
               

               
Cow position:
               
chr11:15772515-15772699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
318-493
               

               
Cow position:
               
chr11:15999845-15999669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
11, 26
               

               
Conread position:
               
318-493
               

               
Cow position:
               
chr11:36266078-36266255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
318-498
               

               
Cow position:
               
chr11:46499188-46499017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
108, 48
               

               
Conread position:
               
318-499
               

               
Cow position:
               
chr11:16315071-16314878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
318-500
               

               
Cow position:
               
chr11:34113448-34113270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
108, 23
               

               
Conread position:
               
318-504
               

               
Cow position:
               
chr11:63849761-63849955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
26, 44
               

               
Conread position:
               
319-484
               

               
Cow position:
               
chr11:36182886-36182715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
44, 11
               

               
Conread position:
               
319-490
               

               
Cow position:
               
chr11:44859099-44859272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
319-498
               

               
Cow position:
               
chr11:41549139-41549328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
21, 97
               

               
Conread position:
               
319-499
               

               
Cow position:
               
chr11:47784976-47784780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
320-470
               

               
Cow position:
               
chr11:17493664-17493518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
76, 17
               

               
Conread position:
               
320-490
               

               
Cow position:
               
chr11:74839798-74839625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
43, 85
               

               
Conread position:
               
320-496
               

               
Cow position:
               
chr11:62742454-62742637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
44, 12
               

               
Conread position:
               
320-499
               

               
Cow position:
               
chr11:1067254-1067434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
87, 28
               

               
Conread position:
               
320-499
               

               
Cow position:
               
chr11:35536770-35536593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
106, 81
               

               
Conread position:
               
320-499
               

               
Cow position:
               
chr11:47837514-47837325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
321-499
               

               
Cow position:
               
chr11:46884570-46884379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
321-499
               

               
Cow position:
               
chr11:70600633-70600823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
322-484
               

               
Cow position:
               
chr11:30830430-30830593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
40, 82
               

               
Conread position:
               
322-484
               

               
Cow position:
               
chr11:57767380-57767210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
40, 8
               

               
Conread position:
               
322-497
               

               
Cow position:
               
chr11:77241895-77241712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
41, 90
               

               
Conread position:
               
322-499
               

               
Cow position:
               
chr11:44620143-44619960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
41, 8
               

               
Conread position:
               
323-498
               

               
Cow position:
               
chr11:9270548-9270719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
38, 9
               

               
Conread position:
               
324-497
               

               
Cow position:
               
chr11:83926222-83926051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
102, 49
               

               
Conread position:
               
324-499
               

               
Cow position:
               
chr11:19946612-19946441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
32, 82
               

               
Conread position:
               
324-499
               

               
Cow position:
               
chr11:35669776-35669946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
99, 6
               

               
Conread position:
               
324-499
               

               
Cow position:
               
chr11:49396334-49396520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
325-494
               

               
Cow position:
               
chr11:32693304-32693473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
93, 105
               

               
Conread position:
               
327-499
               

               
Cow position:
               
chr11:29482253-29482430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
332-493
               

               
Cow position:
               
chr11:21468866-21468706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
90, 77
               

               
Conread position:
               
334-456
               

               
Cow position:
               
chr11:5226162-5226038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
334-470
               

               
Cow position:
               
chr11:65826573-65826716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
334-478
               

               
Cow position:
               
chr11:21886011-21885860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
28, 140
               

               
Conread position:
               
334-490
               

               
Cow position:
               
chr11:37490406-37490562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
88, 14
               

               
Conread position:
               
334-493
               

               
Cow position:
               
chr11:3546251-3546407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
334-493
               

               
Cow position:
               
chr11:12350081-12350242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
334-493
               

               
Cow position:
               
chr11:75921586-75921433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
334-494
               

               
Cow position:
               
chr11:36300403-36300572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
29, 121
               

               
Conread position:
               
334-499
               

               
Cow position:
               
chr11:6233697-6233874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
334-499
               

               
Cow position:
               
chr11:38236426-38236257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
334-504
               

               
Cow position:
               
chr11:46427226-46427407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
336-484
               

               
Cow position:
               
chr11:17721622-17721781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
336-495
               

               
Cow position:
               
chr11:34279915-34279752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
336-496
               

               
Cow position:
               
chr11:63498952-63499121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
27, 88
               

               
Conread position:
               
336-499
               

               
Cow position:
               
chr11:63485111-63484943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
26, 66
               

               
Conread position:
               
336-499
               

               
Cow position:
               
chr11:67312964-67312786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
336-504
               

               
Cow position:
               
chr11:63919888-63920053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
90, 30
               

               
Conread position:
               
337-498
               

               
Cow position:
               
chr11:63435689-63435527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
60, 13
               

               
Conread position:
               
339-494
               

               
Cow position:
               
chr11:7924252-7924404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
90, 26
               

               
Conread position:
               
340-483
               

               
Cow position:
               
chr11:70978577-70978712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
340-499
               

               
Cow position:
               
chr11:84977199-84977353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
83, 60
               

               
Conread position:
               
348-496
               

               
Cow position:
               
chr11:63909497-63909658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
359-500
               

               
Cow position:
               
chr11:36920427-36920572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
29, 53
               

               
Conread position:
               
360-482
               

               
Cow position:
               
chr11:78820295-78820173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
360-483
               

               
Cow position:
               
chr11:6319985-6320111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
360-484
               

               
Cow position:
               
chr11:21173291-21173417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
360-484
               

               
Cow position:
               
chr11:29786347-29786478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
360-484
               

               
Cow position:
               
chr11:37435841-37435967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
360-495
               

               
Cow position:
               
chr11:21843993-21844127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
63, 90
               

               
Conread position:
               
360-496
               

               
Cow position:
               
chr11:30209675-30209814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
360-499
               

               
Cow position:
               
chr11:9836309-9836451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
360-499
               

               
Cow position:
               
chr11:13043002-13043140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
72, 37
               

               
Conread position:
               
360-499
               

               
Cow position:
               
chr11:34136387-34136246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
30, 75
               

               
Conread position:
               
360-499
               

               
Cow position:
               
chr11:47411988-47411846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
360-499
               

               
Cow position:
               
chr11:60720308-60720450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
360-499
               

               
Cow position:
               
chr11:66041418-66041284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
66, 37
               

               
Conread position:
               
361-470
               

               
Cow position:
               
chr11:34144774-34144890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
371-499
               

               
Cow position:
               
chr11:79869465-79869331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
372-478
               

               
Cow position:
               
chr11:62081838-62081941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
51, 29
               

               
Conread position:
               
379-502
               

               
Cow position:
               
chr11:30306555-30306432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
46, 92
               

               
Conread position:
               
383-495
               

               
Cow position:
               
chr11:60470076-60470188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
385-498
               

               
Cow position:
               
chr11:59916266-59916153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
41, 21
               

               
Conread position:
               
256-494
               

               
Cow position:
               
chr12:43974521-43974278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
16, 31
               

               
Conread position:
               
284-483
               

               
Cow position:
               
chr12:38774039-38774242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
80, 15
               

               
Conread position:
               
286-494
               

               
Cow position:
               
chr12:3454909-3454684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
287-484
               

               
Cow position:
               
chr12:3371663-3371857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
70, 21
               

               
Conread position:
               
289-502
               

               
Cow position:
               
chr12:30590964-30590749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
11, 65
               

               
Conread position:
               
295-484
               

               
Cow position:
               
chr12:20479140-20479338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
295-501
               

               
Cow position:
               
chr12:12699442-12699658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
65, 37
               

               
Conread position:
               
296-499
               

               
Cow position:
               
chr12:42180942-42181144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
5, 37
               

               
Conread position:
               
296-500
               

               
Cow position:
               
chr12:25456614-25456393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
68, 36
               

               
Conread position:
               
297-499
               

               
Cow position:
               
chr12:21780354-21780147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
36, 67
               

               
Conread position:
               
298-500
               

               
Cow position:
               
chr12:6958413-6958204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
61, 36
               

               
Conread position:
               
300-492
               

               
Cow position:
               
chr12:20654298-20654486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
33, 51
               

               
Conread position:
               
306-482
               

               
Cow position:
               
chr12:23714859-23714676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
307-499
               

               
Cow position:
               
chr12:42286152-42285955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
21, 91
               

               
Conread position:
               
307-503
               

               
Cow position:
               
chr12:12301114-12300899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
312-470
               

               
Cow position:
               
chr12:19258458-19258290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
312-499
               

               
Cow position:
               
chr12:30042903-30042710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
12, 52
               

               
Conread position:
               
313-493
               

               
Cow position:
               
chr12:21903948-21903774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
16, 45
               

               
Conread position:
               
314-499
               

               
Cow position:
               
chr12:24396986-24397178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
46, 159
               

               
Conread position:
               
314-499
               

               
Cow position:
               
chr12:39149868-39150067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
315-509
               

               
Cow position:
               
chr12:43610694-43610884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
10, 64
               

               
Conread position:
               
316-480
               

               
Cow position:
               
chr12:26868639-26868810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
13, 22
               

               
Conread position:
               
316-490
               

               
Cow position:
               
chr12:43645329-43645504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
15, 95
               

               
Conread position:
               
316-498
               

               
Cow position:
               
chr12:35137095-35136904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
316-500
               

               
Cow position:
               
chr12:7110385-7110182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
6, 15
               

               
Conread position:
               
318-499
               

               
Cow position:
               
chr12:14223158-14222966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
318-499
               

               
Cow position:
               
chr12:26749774-26749967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
318-499
               

               
Cow position:
               
chr12:30806025-30805838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
27, 14
               

               
Conread position:
               
318-499
               

               
Cow position:
               
chr12:37123819-37123634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
36, 32
               

               
Conread position:
               
318-499
               

               
Cow position:
               
chr12:45001895-45002082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
319-490
               

               
Cow position:
               
chr12:43644001-43644173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
12, 92
               

               
Conread position:
               
319-497
               

               
Cow position:
               
chr12:7884505-7884694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
319-498
               

               
Cow position:
               
chr12:35770850-35771035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
319-499
               

               
Cow position:
               
chr12:48415346-48415531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
43, 90
               

               
Conread position:
               
320-470
               

               
Cow position:
               
chr12:19697568-19697414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
18, 84
               

               
Conread position:
               
320-499
               

               
Cow position:
               
chr12:4720107-4719932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
12, 31
               

               
Conread position:
               
321-496
               

               
Cow position:
               
chr12:46333516-46333333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
16, 120
               

               
Conread position:
               
322-499
               

               
Cow position:
               
chr12:3586285-3586103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
37, 54
               

               
Conread position:
               
323-470
               

               
Cow position:
               
chr12:21819592-21819446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
84, 20
               

               
Conread position:
               
326-470
               

               
Cow position:
               
chr12:44892376-44892221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
35, 120
               

               
Conread position:
               
327-470
               

               
Cow position:
               
chr12:26576058-26575910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
34, 83
               

               
Conread position:
               
327-499
               

               
Cow position:
               
chr12:33976369-33976184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
328-552
               

               
Cow position:
               
chr12:28598436-28598179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
332-499
               

               
Cow position:
               
chr12:8943054-8943239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
334-483
               

               
Cow position:
               
chr12:42562057-42561902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
25, 84
               

               
Conread position:
               
334-493
               

               
Cow position:
               
chr12:15509612-15509771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
334-493
               

               
Cow position:
               
chr12:24391461-24391310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
92, 23
               

               
Conread position:
               
334-498
               

               
Cow position:
               
chr12:43855049-43854879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
30, 65
               

               
Conread position:
               
334-499
               

               
Cow position:
               
chr12:6410577-6410750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
25, 46
               

               
Conread position:
               
334-499
               

               
Cow position:
               
chr12:26357208-26357386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
334-501
               

               
Cow position:
               
chr12:29057549-29057372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
335-493
               

               
Cow position:
               
chr12:26945687-26945844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
91, 68
               

               
Conread position:
               
336-496
               

               
Cow position:
               
chr12:22859607-22859450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
90, 46
               

               
Conread position:
               
340-484
               

               
Cow position:
               
chr12:29779773-29779914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
7, 13
               

               
Conread position:
               
340-495
               

               
Cow position:
               
chr12:41159734-41159576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
344-456
               

               
Cow position:
               
chr12:10861884-10861775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
79, 52
               

               
Conread position:
               
360-484
               

               
Cow position:
               
chr12:14987924-14987799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
360-484
               

               
Cow position:
               
chr12:17744740-17744864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
51, 36
               

               
Conread position:
               
360-484
               

               
Cow position:
               
chr12:21389998-21389871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
360-490
               

               
Cow position:
               
chr12:44861133-44861266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
360-498
               

               
Cow position:
               
chr12:5635328-5635468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
360-498
               

               
Cow position:
               
chr12:26147044-26147184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
360-498
               

               
Cow position:
               
chr12:33323370-33323510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
360-499
               

               
Cow position:
               
chr12:4866938-4866802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
66, 28
               

               
Conread position:
               
360-499
               

               
Cow position:
               
chr12:20355347-20355200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
360-499
               

               
Cow position:
               
chr12:25417451-25417585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
63, 12
               

               
Conread position:
               
360-499
               

               
Cow position:
               
chr12:38126397-38126539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
362-499
               

               
Cow position:
               
chr12:11106456-11106596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
362-499
               

               
Cow position:
               
chr12:23574892-23574748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
369-499
               

               
Cow position:
               
chr12:9514479-9514346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
371-483
               

               
Cow position:
               
chr12:35124005-35123890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
376-499
               

               
Cow position:
               
chr12:24222411-24222536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
382-499
               

               
Cow position:
               
chr12:27430610-27430491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
388-500
               

               
Cow position:
               
chr12:22341344-22341231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
17, 102
               

               
Conread position:
               
389-499
               

               
Cow position:
               
chr12:42698150-42698260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
34, 98
               

               
Conread position:
               
390-499
               

               
Cow position:
               
chr12:41474184-41474074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
256-499
               

               
Cow position:
               
chr13:15996748-15996996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
108, 10
               

               
Conread position:
               
259-504
               

               
Cow position:
               
chr13:51940471-51940701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
167, 13
               

               
Conread position:
               
286-478
               

               
Cow position:
               
chr13:14782086-14782283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
39, 123
               

               
Conread position:
               
290-498
               

               
Cow position:
               
chr13:6091658-6091447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
66, 44
               

               
Conread position:
               
291-489
               

               
Cow position:
               
chr13:53847377-53847170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
46, 118
               

               
Conread position:
               
294-483
               

               
Cow position:
               
chr13:37751305-37751120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
96, 9
               

               
Conread position:
               
294-499
               

               
Cow position:
               
chr13:10220709-10220923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
70, 36
               

               
Conread position:
               
296-479
               

               
Cow position:
               
chr13:12449230-12449046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
92, 149
               

               
Conread position:
               
296-499
               

               
Cow position:
               
chr13:10925172-10924959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
68, 161
               

               
Conread position:
               
297-484
               

               
Cow position:
               
chr13:25579432-25579243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
103, 17
               

               
Conread position:
               
299-469
               

               
Cow position:
               
chr13:24004371-24004200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
300-490
               

               
Cow position:
               
chr13:43576775-43576967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
33, 51
               

               
Conread position:
               
300-499
               

               
Cow position:
               
chr13:12707494-12707295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
29, 153
               

               
Conread position:
               
300-499
               

               
Cow position:
               
chr13:20137580-20137783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
32, 53
               

               
Conread position:
               
304-493
               

               
Cow position:
               
chr13:22990868-22990678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
22, 8
               

               
Conread position:
               
304-495
               

               
Cow position:
               
chr13:9899923-9900116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
46, 33
               

               
Conread position:
               
304-499
               

               
Cow position:
               
chr13:47193164-47193352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
7, 34
               

               
Conread position:
               
305-499
               

               
Cow position:
               
chr13:22046249-22046046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
68, 37
               

               
Conread position:
               
306-499
               

               
Cow position:
               
chr13:6113766-6113564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
56, 24
               

               
Conread position:
               
306-499
               

               
Cow position:
               
chr13:24796644-24796840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
32, 21
               

               
Conread position:
               
307-499
               

               
Cow position:
               
chr13:5758571-5758380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
23, 100
               

               
Conread position:
               
307-499
               

               
Cow position:
               
chr13:18491370-18491558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
115, 27
               

               
Conread position:
               
310-490
               

               
Cow position:
               
chr13:34694239-34694058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
19, 97
               

               
Conread position:
               
312-483
               

               
Cow position:
               
chr13:34141571-34141746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
14, 70
               

               
Conread position:
               
312-484
               

               
Cow position:
               
chr13:14084685-14084528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
312-499
               

               
Cow position:
               
chr13:9707981-9707787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
11, 99
               

               
Conread position:
               
312-499
               

               
Cow position:
               
chr13:17813238-17813433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
313-495
               

               
Cow position:
               
chr13:311200-311396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
313-495
               

               
Cow position:
               
chr13:26480433-26480248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
50, 22
               

               
Conread position:
               
313-504
               

               
Cow position:
               
chr13:28071641-28071838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
314-487
               

               
Cow position:
               
chr13:10986739-10986551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
314-494
               

               
Cow position:
               
chr13:14795976-14796167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
48, 22
               

               
Conread position:
               
314-494
               

               
Cow position:
               
chr13:28536554-28536360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
314-499
               

               
Cow position:
               
chr13:5263500-5263319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
19, 37
               

               
Conread position:
               
314-499
               

               
Cow position:
               
chr13:13797048-13796849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
314-499
               

               
Cow position:
               
chr13:21275628-21275821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
50, 18
               

               
Conread position:
               
314-499
               

               
Cow position:
               
chr13:60509344-60509158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
86, 13
               

               
Conread position:
               
314-500
               

               
Cow position:
               
chr13:15162864-15162669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
49, 16
               

               
Conread position:
               
314-502
               

               
Cow position:
               
chr13:52893916-52894112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
315-499
               

               
Cow position:
               
chr13:19006658-19006472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
92, 19
               

               
Conread position:
               
315-504
               

               
Cow position:
               
chr13:3153517-3153717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
316-450
               

               
Cow position:
               
chr13:16138024-16138157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
74, 14
               

               
Conread position:
               
316-484
               

               
Cow position:
               
chr13:16907984-16908164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
316-493
               

               
Cow position:
               
chr13:42613861-42614040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
316-499
               

               
Cow position:
               
chr13:38702869-38702667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
6, 162
               

               
Conread position:
               
316-499
               

               
Cow position:
               
chr13:42640152-42640348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
71, 18
               
316-499UCSC Genome Browser

               
Conread position:
               

               

               
Cow position:
               
chr13:54128826-54128634 (view  custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
45, 20
               
317-484UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr13:53619772-53619951 (view  custom track)

               
               
               
Alignm length:
180

               
               
               
Alignm identity:
133

               
               
               
Alignm E-value:
2e-24

               
               
               
Alignm gaps (pig, cow):
47, 0
317-503UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr13:20271459-20271259 (view  custom track)

               
               
               
Alignm length:
202

               
               
               
Alignm identity:
148

               
               
               
Alignm E-value:
7e-25

               
               
               
Alignm gaps (pig, cow):
45, 162

               
               
               Conread position:318-475
               
               
               Cow position:chr13:20854687-20854518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):46, 100

               
               
               Conread position:318-486
               
               
               Cow position:chr13:20534673-20534845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):45, 85

               
               
               Conread position:318-490
               
               
               Cow position:chr13:28081487-28081675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:318-499
               
               
               Cow position:chr13:20876136-20875955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):108, 18

               
               
               Conread position:318-499
               
               
               Cow position:chr13:37775435-37775245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:319-493
               
               
               Cow position:chr13:2233526-2233350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:319-498
               
               
               Cow position:chr13:28439191-28439370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):104, 15

               
               
               Conread position:320-487
               
               
               Cow position:chr13:8699967-8699787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):42, 14

               
               
               Conread position:320-490
               
               
               Cow position:chr13:1462516-1462339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:320-493
               
               
               Cow position:chr13:57929787-57929614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):102, 10

               
               
               Conread position:320-494
               
               
               Cow position:chr13:6486477-6486289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):44, 12

               
               
               Conread position:320-524
               
               
               Cow position:chr13:56432035-56431841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):106, 30

               
               
               Conread position:321-484
               
               
               Cow position:chr13:14543913-14544082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):42, 11

               
               
               Conread position:321-499
               
               
               Cow position:chr13:52055816-52055630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):43, 13

               
               
               Conread position:321-504
               
               
               Cow position:chr13:14575994-14576180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 9

               
               
               Conread position:323-490
               
               
               Cow position:chr13:50623033-50622859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:324-484
               
               
               Cow position:chr13:16790004-16790156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):102, 46

               
               
               Conread position:324-499
               
               
               Cow position:chr13:34261013-34261193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):14, 80

               
               
               Conread position:324-504
               
               
               Cow position:chr13:18166511-18166699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 92

               
               
               Conread position:325-478
               
               
               Cow position:chr13:5092614-5092453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 11

               
               
               Conread position:325-486
               
               
               Cow position:chr13:54652528-54652373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):101, 7

               
               
               Conread position:326-499
               
               
               Cow position:chr13:18340322-18340495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):78, 34

               
               
               Conread position:327-495
               
               
               Cow position:chr13:10522721-10522896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):33, 82

               
               
               Conread position:327-499
               
               
               Cow position:chr13:6973944-6974123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):37, 78

               
               
               Conread position:327-501
               
               
               Cow position:chr13:53865418-53865600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):36, 10

               
               
               Conread position:331-493
               
               
               Cow position:chr13:42203817-42203981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:333-503
               
               
               Cow position:chr13:46298966-46298790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:334-474
               
               
               Cow position:chr13:24009667-24009521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:334-494
               
               
               Cow position:chr13:2907095-2907256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:334-495
               
               
               Cow position:chr13:8232807-8232960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):89, 68

               
               
               Conread position:334-499
               
               
               Cow position:chr13:42200409-42200581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):30, 72

               
               
               Conread position:334-499
               
               
               Cow position:chr13:62007896-62008069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):30, 64

               
               
               Conread position:335-494
               
               
               Cow position:chr13:18994917-18995084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:336-477
               
               
               Cow position:chr13:19393087-19393232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):28, 72

               
               
               Conread position:336-478
               
               
               Cow position:chr13:33854890-33854743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):27, 66

               
               
               Conread position:336-493
               
               
               Cow position:chr13:3278171-3278013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:337-494
               
               
               Cow position:chr13:15083464-15083621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):18, 12

               
               
               Conread position:337-496
               
               
               Cow position:chr13:15193096-15192928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):23, 158

               
               
               Conread position:340-492
               
               
               Cow position:chr13:9492571-9492726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):23, 62

               
               
               Conread position:352-484
               
               
               Cow position:chr13:43919451-43919314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:353-493
               
               
               Cow position:chr13:62325778-62325919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:360-475
               
               
               Cow position:chr13:7097410-7097524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):63, 28

               
               
               Conread position:360-492
               
               
               Cow position:chr13:11260101-11260230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):63, 43

               
               
               Conread position:360-495
               
               
               Cow position:chr13:47243730-47243593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:360-498
               
               
               Cow position:chr13:19779031-19778891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr13:6926336-6926479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr13:17823126-17822988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):66, 47

               
               
               Conread position:360-499
               
               
               Cow position:chr13:55080962-55081104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:360-500
               
               
               Cow position:chr13:8667439-8667582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:360-501
               
               
               Cow position:chr13:17159058-17158914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:360-503
               
               
               Cow position:chr13:7190791-7190930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:363-487
               
               
               Cow position:chr13:52177429-52177550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:371-486
               
               
               Cow position:chr13:52057392-52057506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):55, 31

               
               
               Conread position:373-502
               
               
               Cow position:chr13:38703042-38702914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):50, 69

               
               
               Conread position:378-499
               
               
               Cow position:chr13:18615220-18615346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:379-493
               
               
               Cow position:chr13:56728890-56729005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:384-499
               
               
               Cow position:chr13:3211398-3211511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:96
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):42, 14

               
               
               Conread position:390-501
               
               
               Cow position:chr13:57446267-57446154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:393-499
               
               
               Cow position:chr13:21294930-21295037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:87
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:403-495
               
               
               Cow position:chr13:42229178-42229271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:94
               
               
               Alignm identity:80
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:253-499
               
               
               Cow position:chr14:16256542-16256778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):173, 13

               
               
               Conread position:265-484
               
               
               Cow position:chr14:27608956-27609175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):94, 47

               
               
               Conread position:265-493
               
               
               Cow position:chr14:3923690-3923921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:280-483
               
               
               Cow position:chr14:36151116-36151328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):84, 50

               
               
               Conread position:282-503
               
               
               Cow position:chr14:8036123-8036347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:284-484
               
               
               Cow position:chr14:20010714-20010501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):53, 30

               
               
               Conread position:284-492
               
               
               Cow position:chr14:38747488-38747690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):49, 12

               
               
               Conread position:286-493
               
               
               Cow position:chr14:24880803-24880592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):22, 123

               
               
               Conread position:287-493
               
               
               Cow position:chr14:1859797-1859605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):25, 16

               
               
               Conread position:288-496
               
               
               Cow position:chr14:38920758-38920968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):10, 23

               
               
               Conread position:299-499
               
               
               Cow position:chr14:37152125-37151921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):60, 106

               
               
               Conread position:302-499
               
               
               Cow position:chr14:8083012-8083217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 6

               
               
               Conread position:308-499
               
               
               Cow position:chr14:24785478-24785677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):56, 104

               
               
               Conread position:310-494
               
               
               Cow position:chr14:4282689-4282490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:311-499
               
               
               Cow position:chr14:27652982-27653183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):12, 25

               
               
               Conread position:312-484
               
               
               Cow position:chr14:4848172-4848352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:312-493
               
               
               Cow position:chr14:46032046-46032224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):23, 61

               
               
               Conread position:313-496
               
               
               Cow position:chr14:43192688-43192860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:313-504
               
               
               Cow position:chr14:47200311-47200100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:314-499
               
               
               Cow position:chr14:20245336-20245150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):5, 84

               
               
               Conread position:314-499
               
               
               Cow position:chr14:27303481-27303677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:314-503
               
               
               Cow position:chr14:13809779-13809963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):112, 47

               
               
               Conread position:315-495
               
               
               Cow position:chr14:11056907-11056714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):45, 32

               
               
               Conread position:315-499
               
               
               Cow position:chr14:23419619-23419817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:318-459
               
               
               Cow position:chr14:42633199-42633332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:318-491
               
               
               Cow position:chr14:14466621-14466444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):15, 33

               
               
               Conread position:318-493
               
               
               Cow position:chr14:31893417-31893593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):11, 127

               
               
               Conread position:318-493
               
               
               Cow position:chr14:38458431-38458607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:318-499
               
               
               Cow position:chr14:19618913-19618732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):80, 16

               
               
               Conread position:318-499
               
               
               Cow position:chr14:40230806-40230616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:319-479
               
               
               Cow position:chr14:20234362-20234194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:319-484
               
               
               Cow position:chr14:41156890-41156720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):44, 78

               
               
               Conread position:319-496
               
               
               Cow position:chr14:21357387-21357574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:320-484
               
               
               Cow position:chr14:32784285-32784111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):44, 15

               
               
               Conread position:320-499
               
               
               Cow position:chr14:13385200-13385387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):41, 18

               
               
               Conread position:321-484
               
               
               Cow position:chr14:40952104-40952275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:321-499
               
               
               Cow position:chr14:18270195-18270380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):39, 9

               
               
               Conread position:321-499
               
               
               Cow position:chr14:27823267-27823451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):42, 11

               
               
               Conread position:321-499
               
               
               Cow position:chr14:44713251-44713438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:321-504
               
               
               Cow position:chr14:30023365-30023173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 9

               
               
               Conread position:322-496
               
               
               Cow position:chr14:10721868-10721690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):39, 12

               
               
               Conread position:322-499
               
               
               Cow position:chr14:5959159-5958964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):42, 14

               
               
               Conread position:324-501
               
               
               Cow position:chr14:24387287-24387462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):39, 10

               
               
               Conread position:332-484
               
               
               Cow position:chr14:10693403-10693250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):56, 18

               
               
               Conread position:334-484
               
               
               Cow position:chr14:25912499-25912655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):30, 72

               
               
               Conread position:334-493
               
               
               Cow position:chr14:6595472-6595632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:334-493
               
               
               Cow position:chr14:11917013-11917170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:334-493
               
               
               Cow position:chr14:44067341-44067499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):31, 42

               
               
               Conread position:335-494
               
               
               Cow position:chr14:24981299-24981474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:336-499
               
               
               Cow position:chr14:1796044-1796210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):28, 100

               
               
               Conread position:337-478
               
               
               Cow position:chr14:20466784-20466935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:337-495
               
               
               Cow position:chr14:37447611-37447448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:337-499
               
               
               Cow position:chr14:23078933-23078773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):95, 11

               
               
               Conread position:338-493
               
               
               Cow position:chr14:42153548-42153391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:345-483
               
               
               Cow position:chr14:37479234-37479363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):82, 50

               
               
               Conread position:360-494
               
               
               Cow position:chr14:13516112-13515973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr14:35381469-35381609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):33, 88

               
               
               Conread position:360-499
               
               
               Cow position:chr14:38144230-38144088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:360-500
               
               
               Cow position:chr14:18412714-18412571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:360-501
               
               
               Cow position:chr14:21593122-21592983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):66, 48

               
               
               Conread position:360-503
               
               
               Cow position:chr14:24806476-24806620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:371-478
               
               
               Cow position:chr14:21530185-21530075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:90
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:389-499
               
               
               Cow position:chr14:25073033-25073144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:389-499
               
               
               Cow position:chr14:42436933-42437044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:254-469
               
               
               Cow position:chr15:33785008-33784789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):14, 32

               
               
               Conread position:276-499
               
               
               Cow position:chr15:20856639-20856410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:280-493
               
               
               Cow position:chr15:6649066-6649282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):49, 148

               
               
               Conread position:282-494
               
               
               Cow position:chr15:22531509-22531729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):20, 131

               
               
               Conread position:289-499
               
               
               Cow position:chr15:4248006-4248214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):44, 37

               
               
               Conread position:291-468
               
               
               Cow position:chr15:42129114-42129304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):27, 15

               
               
               Conread position:291-468
               
               
               Cow position:chr15:42137085-42137275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):27, 15

               
               
               Conread position:291-494
               
               
               Cow position:chr15:20422916-20422717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):135, 65

               
               
               Conread position:296-484
               
               
               Cow position:chr15:16928236-16928043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):42, 53

               
               
               Conread position:304-501
               
               
               Cow position:chr15:20459450-20459240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):34, 8

               
               
               Conread position:306-495
               
               
               Cow position:chr15:44119592-44119405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):101, 31

               
               
               Conread position:306-499
               
               
               Cow position:chr15:53028226-53028429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:306-504
               
               
               Cow position:chr15:28098985-28099183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):22, 53

               
               
               Conread position:307-484
               
               
               Cow position:chr15:34223732-34223917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:307-498
               
               
               Cow position:chr15:21893643-21893844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):31, 106

               
               
               Conread position:308-486
               
               
               Cow position:chr15:5710275-5710455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):6, 71

               
               
               Conread position:309-487
               
               
               Cow position:chr15:35759590-35759419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):18, 89

               
               
               Conread position:309-493
               
               
               Cow position:chr15:36649857-36649672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):20, 51

               
               
               Conread position:310-499
               
               
               Cow position:chr15:4418533-4418334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):52, 24

               
               
               Conread position:310-503
               
               
               Cow position:chr15:41625016-41624824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):84, 48

               
               
               Conread position:312-478
               
               
               Cow position:chr15:244651-244826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:312-499
               
               
               Cow position:chr15:19554058-19553858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:313-490
               
               
               Cow position:chr15:52463997-52463821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):109, 19

               
               
               Conread position:313-503
               
               
               Cow position:chr15:40562812-40562612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:314-454
               
               
               Cow position:chr15:19119713-19119569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):25, 64

               
               
               Conread position:314-484
               
               
               Cow position:chr15:27976000-27975820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):58, 20

               
               
               Conread position:314-490
               
               
               Cow position:chr15:9879508-9879320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:314-493
               
               
               Cow position:chr15:3036636-3036816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):28, 160

               
               
               Conread position:314-499
               
               
               Cow position:chr15:22939442-22939259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):18, 37

               
               
               Conread position:314-499
               
               
               Cow position:chr15:27900633-27900444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:314-499
               
               
               Cow position:chr15:36388172-36388357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):44, 22

               
               
               Conread position:314-502
               
               
               Cow position:chr15:6129083-6128897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):23, 60

               
               
               Conread position:315-499
               
               
               Cow position:chr15:21822054-21821858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:315-499
               
               
               Cow position:chr15:26529771-26529956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):49, 17

               
               
               Conread position:316-468
               
               
               Cow position:chr15:3591276-3591429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):44, 87

               
               
               Conread position:316-500
               
               
               Cow position:chr15:31637169-31637367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):48, 184

               
               
               Conread position:316-500
               
               
               Cow position:chr15:36391548-36391741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):45, 14

               
               
               Conread position:316-504
               
               
               Cow position:chr15:4138006-4138206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):26, 169

               
               
               Conread position:317-484
               
               
               Cow position:chr15:30983918-30983756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):101, 19

               
               
               Conread position:317-494
               
               
               Cow position:chr15:5522832-5523019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):16, 34

               
               
               Conread position:318-484
               
               
               Cow position:chr15:5409019-5408846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):13, 93

               
               
               Conread position:318-495
               
               
               Cow position:chr15:5235104-5234935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):114, 32

               
               
               Conread position:318-497
               
               
               Cow position:chr15:21420826-21421002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):43, 21

               
               
               Conread position:318-499
               
               
               Cow position:chr15:48052722-48052538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):45, 90

               
               
               Conread position:319-432
               
               
               Cow position:chr15:6656796-6656912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:319-499
               
               
               Cow position:chr15:4295647-4295829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):87, 28

               
               
               Conread position:319-499
               
               
               Cow position:chr15:16603712-16603891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):26, 80

               
               
               Conread position:320-495
               
               
               Cow position:chr15:29810003-29810185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):41, 74

               
               
               Conread position:320-496
               
               
               Cow position:chr15:10073835-10074025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):42, 12

               
               
               Conread position:320-497
               
               
               Cow position:chr15:28823934-28823755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):42, 76

               
               
               Conread position:321-499
               
               
               Cow position:chr15:43626343-43626535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:321-503
               
               
               Cow position:chr15:45574746-45574566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):38, 11

               
               
               Conread position:322-470
               
               
               Cow position:chr15:27927024-27927173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):82, 66

               
               
               Conread position:322-478
               
               
               Cow position:chr15:23572799-23572641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):11, 29

               
               
               Conread position:322-499
               
               
               Cow position:chr15:15154181-15154366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):41, 10

               
               
               Conread position:322-499
               
               
               Cow position:chr15:26919390-26919209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):16, 73

               
               
               Conread position:322-500
               
               
               Cow position:chr15:21520022-21520217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:323-499
               
               
               Cow position:chr15:20487319-20487137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):68, 11

               
               
               Conread position:324-496
               
               
               Cow position:chr15:38883028-38883212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:325-490
               
               
               Cow position:chr15:10785903-10786069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:325-499
               
               
               Cow position:chr15:32977945-32977780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):100, 15

               
               
               Conread position:327-497
               
               
               Cow position:chr15:12913614-12913434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:327-499
               
               
               Cow position:chr15:4500584-4500769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):35, 7

               
               
               Conread position:327-499
               
               
               Cow position:chr15:9106935-9107100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:331-495
               
               
               Cow position:chr15:26912179-26912010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:331-499
               
               
               Cow position:chr15:31929009-31928830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:334-476
               
               
               Cow position:chr15:22463552-22463689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):70, 34

               
               
               Conread position:334-493
               
               
               Cow position:chr15:18449892-18450058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:334-493
               
               
               Cow position:chr15:39668109-39667952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:334-495
               
               
               Cow position:chr15:32324316-32324142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:334-501
               
               
               Cow position:chr15:11996136-11995959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:334-502
               
               
               Cow position:chr15:12722976-12723158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:335-493
               
               
               Cow position:chr15:40562553-40562394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:336-484
               
               
               Cow position:chr15:41528072-41527921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):27, 65

               
               
               Conread position:336-495
               
               
               Cow position:chr15:14353017-14353166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:336-495
               
               
               Cow position:chr15:36773787-36773632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):12, 62

               
               
               Conread position:336-497
               
               
               Cow position:chr15:21903513-21903346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):27, 58

               
               
               Conread position:337-501
               
               
               Cow position:chr15:25788286-25788451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:338-499
               
               
               Cow position:chr15:41582794-41582946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:338-502
               
               
               Cow position:chr15:38196181-38196010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):26, 65

               
               
               Conread position:360-494
               
               
               Cow position:chr15:17227002-17226862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:360-496
               
               
               Cow position:chr15:5691029-5691164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:360-498
               
               
               Cow position:chr15:38860205-38860063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr15:9465601-9465743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:360-500
               
               
               Cow position:chr15:52432265-52432409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):34, 131

               
               
               Conread position:382-503
               
               
               Cow position:chr15:23927936-23927812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:385-499
               
               
               Cow position:chr15:14261306-14261191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:93
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:388-501
               
               
               Cow position:chr15:16911708-16911594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:389-499
               
               
               Cow position:chr15:39316887-39316776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:92
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:165-499
               
               
               Cow position:chr16:18429947-18429611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):52, 10

               
               
               Conread position:275-483
               
               
               Cow position:chr16:45193548-45193769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):10, 114

               
               
               Conread position:281-493
               
               
               Cow position:chr16:23721801-23722013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):48, 23

               
               
               Conread position:284-487
               
               
               Cow position:chr16:42107877-42107665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:285-493
               
               
               Cow position:chr16:31626045-31626254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:285-501
               
               
               Cow position:chr16:27326877-27327103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 46

               
               
               Conread position:288-498
               
               
               Cow position:chr16:50453997-50453783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):43, 145

               
               
               Conread position:289-495
               
               
               Cow position:chr16:26069983-26069778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):20, 46

               
               
               Conread position:289-499
               
               
               Cow position:chr16:14343810-14343603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):34, 19

               
               
               Conread position:291-483
               
               
               Cow position:chr16:44138249-44138453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):25, 53

               
               
               Conread position:292-497
               
               
               Cow position:chr16:8522149-8522363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):31, 190

               
               
               Conread position:293-493
               
               
               Cow position:chr16:3775969-3775759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:296-477
               
               
               Cow position:chr16:21974724-21974918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):66, 36

               
               
               Conread position:296-493
               
               
               Cow position:chr16:53406617-53406414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:296-499
               
               
               Cow position:chr16:56082124-56082341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:297-491
               
               
               Cow position:chr16:31149611-31149411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):32, 116

               
               
               Conread position:297-494
               
               
               Cow position:chr16:45943527-45943737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:297-499
               
               
               Cow position:chr16:13306633-13306848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:297-499
               
               
               Cow position:chr16:30211685-30211478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 110

               
               
               Conread position:299-493
               
               
               Cow position:chr16:45233584-45233392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):30, 7

               
               
               Conread position:299-499
               
               
               Cow position:chr16:38243438-38243639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):94, 51

               
               
               Conread position:299-500
               
               
               Cow position:chr16:56912455-56912664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 190

               
               
               Conread position:300-499
               
               
               Cow position:chr16:44394509-44394304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):33, 51

               
               
               Conread position:306-499
               
               
               Cow position:chr16:43308339-43308537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):58, 138

               
               
               Conread position:308-493
               
               
               Cow position:chr16:20252994-20253180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:308-497
               
               
               Cow position:chr16:18353731-18353932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):71, 26

               
               
               Conread position:309-499
               
               
               Cow position:chr16:56670689-56670895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):55, 5

               
               
               Conread position:310-504
               
               
               Cow position:chr16:39165447-39165258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):28, 43

               
               
               Conread position:312-484
               
               
               Cow position:chr16:4856890-4857063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):21, 14

               
               
               Conread position:312-489
               
               
               Cow position:chr16:6266134-6266310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:312-496
               
               
               Cow position:chr16:22738491-22738300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):26, 120

               
               
               Conread position:314-484
               
               
               Cow position:chr16:7665857-7665676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):8, 25

               
               
               Conread position:314-484
               
               
               Cow position:chr16:11053973-11053799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:314-491
               
               
               Cow position:chr16:56565803-56565628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):111, 13

               
               
               Conread position:314-499
               
               
               Cow position:chr16:23472961-23472773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 83

               
               
               Conread position:314-500
               
               
               Cow position:chr16:28199236-28199051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):24, 37

               
               
               Conread position:314-501
               
               
               Cow position:chr16:21657375-21657185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):12, 92

               
               
               Conread position:316-486
               
               
               Cow position:chr16:19402549-19402725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):6, 17

               
               
               Conread position:316-495
               
               
               Cow position:chr16:16968495-16968674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):48, 12

               
               
               Conread position:316-499
               
               
               Cow position:chr16:11083212-11083022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):48, 101

               
               
               Conread position:317-455
               
               
               Cow position:chr16:21027375-21027237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):106, 85

               
               
               Conread position:317-497
               
               
               Cow position:chr16:30646726-30646538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):16, 94

               
               
               Conread position:317-499
               
               
               Cow position:chr16:41530093-41530276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):48, 67

               
               
               Conread position:317-501
               
               
               Cow position:chr16:36922533-36922717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):108, 83

               
               
               Conread position:318-456
               
               
               Cow position:chr16:23344568-23344706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):11, 105

               
               
               Conread position:318-498
               
               
               Cow position:chr16:13995984-13996172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):52, 14

               
               
               Conread position:318-499
               
               
               Cow position:chr16:46548048-46548245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:318-499
               
               
               Cow position:chr16:50282221-50282408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):44, 74

               
               
               Conread position:318-499
               
               
               Cow position:chr16:50286717-50286536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):12, 33

               
               
               Conread position:319-499
               
               
               Cow position:chr16:7496462-7496280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):41, 76

               
               
               Conread position:319-499
               
               
               Cow position:chr16:14841581-14841383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:320-499
               
               
               Cow position:chr16:4102630-4102807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):75, 46

               
               
               Conread position:320-499
               
               
               Cow position:chr16:18572846-18573030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):44, 10

               
               
               Conread position:321-494
               
               
               Cow position:chr16:8448452-8448626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):43, 22

               
               
               Conread position:322-493
               
               
               Cow position:chr16:22380152-22380323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):47, 76

               
               
               Conread position:322-493
               
               
               Cow position:chr16:25657308-25657132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):74, 8

               
               
               Conread position:322-494
               
               
               Cow position:chr16:18156370-18156178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:322-499
               
               
               Cow position:chr16:28233098-28233281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):41, 8

               
               
               Conread position:323-454
               
               
               Cow position:chr16:319252-319119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):70, 7

               
               
               Conread position:323-470
               
               
               Cow position:chr16:9127014-9126863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):41, 92

               
               
               Conread position:325-484
               
               
               Cow position:chr16:8205875-8206045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 63

               
               
               Conread position:326-497
               
               
               Cow position:chr16:46552997-46552819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 10

               
               
               Conread position:326-499
               
               
               Cow position:chr16:33405295-33405469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):11, 32

               
               
               Conread position:326-499
               
               
               Cow position:chr16:50569466-50569287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):38, 86

               
               
               Conread position:327-499
               
               
               Cow position:chr16:13712737-13712909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):41, 75

               
               
               Conread position:327-499
               
               
               Cow position:chr16:42444365-42444180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:327-499
               
               
               Cow position:chr16:51144004-51143823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):34, 78

               
               
               Conread position:332-491
               
               
               Cow position:chr16:23187738-23187576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):10, 69

               
               
               Conread position:333-498
               
               
               Cow position:chr16:12077282-12077462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:334-483
               
               
               Cow position:chr16:6547670-6547820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:334-484
               
               
               Cow position:chr16:9985204-9985354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):39, 70

               
               
               Conread position:334-484
               
               
               Cow position:chr16:21369992-21370151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:334-493
               
               
               Cow position:chr16:10809629-10809469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:334-493
               
               
               Cow position:chr16:16163515-16163676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:334-499
               
               
               Cow position:chr16:23955633-23955808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:334-499
               
               
               Cow position:chr16:49229576-49229744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):28, 98

               
               
               Conread position:336-484
               
               
               Cow position:chr16:25839807-25839659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):90, 40

               
               
               Conread position:336-494
               
               
               Cow position:chr16:19053695-19053854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:337-480
               
               
               Cow position:chr16:46184345-46184200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):72, 24

               
               
               Conread position:337-499
               
               
               Cow position:chr16:22327705-22327534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:340-499
               
               
               Cow position:chr16:15905052-15905226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:360-483
               
               
               Cow position:chr16:49860397-49860277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:360-484
               
               
               Cow position:chr16:12220849-12220720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:360-486
               
               
               Cow position:chr16:27759437-27759569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:360-490
               
               
               Cow position:chr16:29060547-29060410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:360-498
               
               
               Cow position:chr16:31241129-31241269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr16:4910359-4910501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr16:11957415-11957554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):66, 48

               
               
               Conread position:360-499
               
               
               Cow position:chr16:38355271-38355405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):66, 28

               
               
               Conread position:360-499
               
               
               Cow position:chr16:50289314-50289176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:361-484
               
               
               Cow position:chr16:7812855-7812729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:361-499
               
               
               Cow position:chr16:7928220-7928361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:362-499
               
               
               Cow position:chr16:820412-820274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):64, 35

               
               
               Conread position:362-499
               
               
               Cow position:chr16:9958990-9958853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):64, 48

               
               
               Conread position:379-502
               
               
               Cow position:chr16:19712344-19712466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):47, 18

               
               
               Conread position:389-498
               
               
               Cow position:chr16:12097776-12097666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:389-504
               
               
               Cow position:chr16:53086205-53086322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:163-479
               
               
               Cow position:chr17:21181870-21181535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):9, 84

               
               
               Conread position:261-484
               
               
               Cow position:chr17:18766687-18766915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):102, 18

               
               
               Conread position:274-484
               
               
               Cow position:chr17:36791422-36791205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):59, 32

               
               
               Conread position:274-500
               
               
               Cow position:chr17:25121952-25122180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):50, 20

               
               
               Conread position:277-493
               
               
               Cow position:chr17:21718700-21718927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):25, 142

               
               
               Conread position:279-500
               
               
               Cow position:chr17:32027164-32027389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):26, 72

               
               
               Conread position:280-470
               
               
               Cow position:chr17:21619501-21619682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):49, 38

               
               
               Conread position:288-486
               
               
               Cow position:chr17:24898489-24898277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):25, 16

               
               
               Conread position:289-499
               
               
               Cow position:chr17:10508162-10508370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):12, 22

               
               
               Conread position:291-495
               
               
               Cow position:chr17:9770783-9770571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):73, 39

               
               
               Conread position:291-499
               
               
               Cow position:chr17:20929527-20929305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):23, 15

               
               
               Conread position:296-482
               
               
               Cow position:chr17:28468399-28468203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):67, 30

               
               
               Conread position:296-483
               
               
               Cow position:chr17:31480749-31480958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):17, 147

               
               
               Conread position:299-500
               
               
               Cow position:chr17:15684775-15684573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):60, 37

               
               
               Conread position:300-503
               
               
               Cow position:chr17:44850995-44851199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:302-482
               
               
               Cow position:chr17:6787209-6787017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):62, 28

               
               
               Conread position:303-484
               
               
               Cow position:chr17:21039823-21039636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):61, 14

               
               
               Conread position:305-484
               
               
               Cow position:chr17:9824933-9824748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):57, 29

               
               
               Conread position:310-492
               
               
               Cow position:chr17:7698310-7698117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):12, 171

               
               
               Conread position:312-486
               
               
               Cow position:chr17:32993370-32993547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):51, 21

               
               
               Conread position:312-495
               
               
               Cow position:chr17:40772089-40771900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):52, 25

               
               
               Conread position:314-489
               
               
               Cow position:chr17:42419963-42419783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):9, 21

               
               
               Conread position:314-496
               
               
               Cow position:chr17:24077647-24077467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):11, 75

               
               
               Conread position:314-497
               
               
               Cow position:chr17:3387976-3387783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):47, 29

               
               
               Conread position:314-499
               
               
               Cow position:chr17:21972870-21973066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):44, 20

               
               
               Conread position:314-499
               
               
               Cow position:chr17:25875650-25875459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):50, 16

               
               
               Conread position:314-499
               
               
               Cow position:chr17:25930292-25930475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 22

               
               
               Conread position:314-504
               
               
               Cow position:chr17:20932587-20932390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:316-476
               
               
               Cow position:chr17:22128169-22128009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):10, 28

               
               
               Conread position:316-477
               
               
               Cow position:chr17:25352452-25352283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):14, 56

               
               
               Conread position:316-486
               
               
               Cow position:chr17:32332835-32333014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:317-470
               
               
               Cow position:chr17:20157863-20157700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:317-483
               
               
               Cow position:chr17:24029984-24030152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:317-499
               
               
               Cow position:chr17:11985630-11985814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):21, 89

               
               
               Conread position:318-484
               
               
               Cow position:chr17:21236779-21236601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:318-486
               
               
               Cow position:chr17:32989724-32989553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):45, 15

               
               
               Conread position:318-493
               
               
               Cow position:chr17:5048184-5048000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:318-493
               
               
               Cow position:chr17:17035200-17035019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:318-497
               
               
               Cow position:chr17:35457574-35457750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):14, 33

               
               
               Conread position:318-498
               
               
               Cow position:chr17:40355505-40355323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):19, 33

               
               
               Conread position:318-499
               
               
               Cow position:chr17:26225282-26225091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:318-501
               
               
               Cow position:chr17:28982432-28982243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):23, 120

               
               
               Conread position:318-503
               
               
               Cow position:chr17:5898270-5898467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:320-478
               
               
               Cow position:chr17:32418864-32419031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):13, 97

               
               
               Conread position:320-499
               
               
               Cow position:chr17:12289156-12289345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:320-499
               
               
               Cow position:chr17:21489382-21489561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):105, 80

               
               
               Conread position:321-484
               
               
               Cow position:chr17:10512497-10512655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):100, 15

               
               
               Conread position:321-484
               
               
               Cow position:chr17:40276987-40276819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:322-477
               
               
               Cow position:chr17:7865075-7864910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:322-484
               
               
               Cow position:chr17:21003582-21003750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):42, 12

               
               
               Conread position:322-501
               
               
               Cow position:chr17:9940943-9940757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):75, 14

               
               
               Conread position:323-497
               
               
               Cow position:chr17:1634255-1634426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):103, 27

               
               
               Conread position:323-499
               
               
               Cow position:chr17:10825724-10825544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):41, 11

               
               
               Conread position:324-498
               
               
               Cow position:chr17:20884773-20884587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:324-499
               
               
               Cow position:chr17:34078873-34079047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):83, 28

               
               
               Conread position:325-499
               
               
               Cow position:chr17:8723195-8723370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):74, 9

               
               
               Conread position:329-473
               
               
               Cow position:chr17:31985706-31985851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:332-490
               
               
               Cow position:chr17:5044102-5044259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):94, 71

               
               
               Conread position:332-490
               
               
               Cow position:chr17:18588309-18588157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):94, 43

               
               
               Conread position:334-484
               
               
               Cow position:chr17:1282029-1282179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):92, 38

               
               
               Conread position:335-484
               
               
               Cow position:chr17:14049973-14050128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:336-499
               
               
               Cow position:chr17:20992802-20992978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:336-504
               
               
               Cow position:chr17:5344855-5344676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:338-484
               
               
               Cow position:chr17:27303746-27303890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):88, 44

               
               
               Conread position:338-499
               
               
               Cow position:chr17:31991164-31990997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):59, 111

               
               
               Conread position:340-492
               
               
               Cow position:chr17:43717108-43717267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):23, 63

               
               
               Conread position:344-499
               
               
               Cow position:chr17:12219727-12219875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):82, 53

               
               
               Conread position:344-499
               
               
               Cow position:chr17:25097672-25097519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:355-499
               
               
               Cow position:chr17:30665480-30665336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):54, 78

               
               
               Conread position:360-484
               
               
               Cow position:chr17:30359659-30359537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:360-495
               
               
               Cow position:chr17:950179-950039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:360-495
               
               
               Cow position:chr17:25189493-25189353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:360-498
               
               
               Cow position:chr17:20848727-20848587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr17:7802969-7803111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr17:17180248-17180107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):34, 14

               
               
               Conread position:360-499
               
               
               Cow position:chr17:21363588-21363445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):37, 49

               
               
               Conread position:360-499
               
               
               Cow position:chr17:24862658-24862522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):63, 34

               
               
               Conread position:360-499
               
               
               Cow position:chr17:26072555-26072697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:361-489
               
               
               Cow position:chr17:8660399-8660269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:361-528
               
               
               Cow position:chr17:26183549-26183376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:362-499
               
               
               Cow position:chr17:6329313-6329179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):74, 39

               
               
               Conread position:362-509
               
               
               Cow position:chr17:18775988-18776133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):64, 39

               
               
               Conread position:376-487
               
               
               Cow position:chr17:10803065-10802953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:389-499
               
               
               Cow position:chr17:22074323-22074434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:389-499
               
               
               Cow position:chr17:27202871-27202982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:389-499
               
               
               Cow position:chr17:28814317-28814429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:389-499
               
               
               Cow position:chr17:37430330-37430441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:390-500
               
               
               Cow position:chr17:5720045-5719935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):36, 99

               
               
               Conread position:390-503
               
               
               Cow position:chr17:38833217-38833103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:207-489
               
               
               Cow position:chr18:24507936-24508231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):72, 35

               
               
               Conread position:275-470
               
               
               Cow position:chr18:4857498-4857705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):49, 31

               
               
               Conread position:275-499
               
               
               Cow position:chr18:4718471-4718249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):132, 57

               
               
               Conread position:280-509
               
               
               Cow position:chr18:44909268-44909031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):18, 51

               
               
               Conread position:283-504
               
               
               Cow position:chr18:48242387-48242175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):45, 21

               
               
               Conread position:285-494
               
               
               Cow position:chr18:21676663-21676874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):12, 50

               
               
               Conread position:286-499
               
               
               Cow position:chr18:31159053-31159283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):16, 132

               
               
               Conread position:286-499
               
               
               Cow position:chr18:51675882-51676099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):68, 24

               
               
               Conread position:293-476
               
               
               Cow position:chr18:45903700-45903884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):10, 68

               
               
               Conread position:296-500
               
               
               Cow position:chr18:45558343-45558137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):94, 31

               
               
               Conread position:299-483
               
               
               Cow position:chr18:51712533-51712711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):127, 9

               
               
               Conread position:299-497
               
               
               Cow position:chr18:6005303-6005507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):65, 38

               
               
               Conread position:300-495
               
               
               Cow position:chr18:21782883-21782681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:301-493
               
               
               Cow position:chr18:16356296-16356490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):28, 13

               
               
               Conread position:302-493
               
               
               Cow position:chr18:28657725-28657915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):62, 30

               
               
               Conread position:303-475
               
               
               Cow position:chr18:10757862-10758041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):61, 104

               
               
               Conread position:305-507
               
               
               Cow position:chr18:5189499-5189711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):56, 29

               
               
               Conread position:307-504
               
               
               Cow position:chr18:27637685-27637477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:308-479
               
               
               Cow position:chr18:31556965-31557150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:310-478
               
               
               Cow position:chr18:49602854-49603032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:310-482
               
               
               Cow position:chr18:4907333-4907154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):13, 98

               
               
               Conread position:310-497
               
               
               Cow position:chr18:6818477-6818672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):13, 29

               
               
               Conread position:310-499
               
               
               Cow position:chr18:39114935-39115128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):15, 43

               
               
               Conread position:311-476
               
               
               Cow position:chr18:1793870-1793703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:311-499
               
               
               Cow position:chr18:49970464-49970663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:312-462
               
               
               Cow position:chr18:51259320-51259168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:313-477
               
               
               Cow position:chr18:53561020-53560861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):113, 78

               
               
               Conread position:314-459
               
               
               Cow position:chr18:49401423-49401269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:314-490
               
               
               Cow position:chr18:20641325-20641497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):8, 39

               
               
               Conread position:314-499
               
               
               Cow position:chr18:24719481-24719303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):24, 13

               
               
               Conread position:314-566
               
               
               Cow position:chr18:37804815-37804568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):15, 67

               
               
               Conread position:315-493
               
               
               Cow position:chr18:33361327-33361151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):22, 55

               
               
               Conread position:316-498
               
               
               Cow position:chr18:10051927-10051738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):47, 20

               
               
               Conread position:316-499
               
               
               Cow position:chr18:52251670-52251867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:318-490
               
               
               Cow position:chr18:50632265-50632443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):46, 79

               
               
               Conread position:318-500
               
               
               Cow position:chr18:19868078-19868272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:319-493
               
               
               Cow position:chr18:53787238-53787063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):63, 161

               
               
               Conread position:319-497
               
               
               Cow position:chr18:3518434-3518258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):98, 81

               
               
               Conread position:319-501
               
               
               Cow position:chr18:15351549-15351744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:320-495
               
               
               Cow position:chr18:33883958-33883774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:320-499
               
               
               Cow position:chr18:4530733-4530549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):16, 9

               
               
               Conread position:320-499
               
               
               Cow position:chr18:50359502-50359322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):41, 14

               
               
               Conread position:320-500
               
               
               Cow position:chr18:29390034-29390206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):106, 12

               
               
               Conread position:321-498
               
               
               Cow position:chr18:45897904-45897722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):40, 89

               
               
               Conread position:322-499
               
               
               Cow position:chr18:23898586-23898408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 11

               
               
               Conread position:323-499
               
               
               Cow position:chr18:23446894-23447071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):86, 37

               
               
               Conread position:323-500
               
               
               Cow position:chr18:51413756-51413580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):41, 82

               
               
               Conread position:324-484
               
               
               Cow position:chr18:52414141-52413972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:325-502
               
               
               Cow position:chr18:19961964-19962157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 7

               
               
               Conread position:326-495
               
               
               Cow position:chr18:46647000-46647166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):97, 75

               
               
               Conread position:327-499
               
               
               Cow position:chr18:19809513-19809692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):37, 9

               
               
               Conread position:334-484
               
               
               Cow position:chr18:49038618-49038467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):30, 71

               
               
               Conread position:334-486
               
               
               Cow position:chr18:28322816-28322660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):27, 6

               
               
               Conread position:334-493
               
               
               Cow position:chr18:32295683-32295517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:334-493
               
               
               Cow position:chr18:56157071-56157231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:334-496
               
               
               Cow position:chr18:41702998-41702827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):27, 71

               
               
               Conread position:334-503
               
               
               Cow position:chr18:22045247-22045427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):26, 148

               
               
               Conread position:335-484
               
               
               Cow position:chr18:858981-858829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:336-464
               
               
               Cow position:chr18:20059868-20059996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):88, 15

               
               
               Conread position:336-484
               
               
               Cow position:chr18:33159105-33158947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:336-484
               
               
               Cow position:chr18:48407894-48407744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):28, 53

               
               
               Conread position:336-495
               
               
               Cow position:chr18:4851323-4851489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):27, 69

               
               
               Conread position:338-495
               
               
               Cow position:chr18:911963-912113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):88, 17

               
               
               Conread position:344-499
               
               
               Cow position:chr18:11754281-11754120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:352-493
               
               
               Cow position:chr18:43145576-43145717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):70, 125

               
               
               Conread position:360-484
               
               
               Cow position:chr18:21969672-21969800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:360-484
               
               
               Cow position:chr18:35857795-35857919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):62, 47

               
               
               Conread position:360-499
               
               
               Cow position:chr18:2774007-2774148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr18:23821700-23821842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr18:24266274-24266417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr18:51643240-51643375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:360-500
               
               
               Cow position:chr18:26586483-26586624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):47, 123

               
               
               Conread position:360-556
               
               
               Cow position:chr18:48962068-48961872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):43, 131

               
               
               Conread position:361-498
               
               
               Cow position:chr18:4757902-4758042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:361-504
               
               
               Cow position:chr18:4489773-4489923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:389-499
               
               
               Cow position:chr18:35692957-35692846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:389-501
               
               
               Cow position:chr18:51392542-51392655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:389-503
               
               
               Cow position:chr18:52245308-52245194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):36, 90

               
               
               Conread position:391-499
               
               
               Cow position:chr18:22214587-22214478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:228-482
               
               
               Cow position:chr19:19174813-19174547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):48, 91

               
               
               Conread position:272-499
               
               
               Cow position:chr19:52750508-52750746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:281-494
               
               
               Cow position:chr19:18034900-18035117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):45, 83

               
               
               Conread position:284-474
               
               
               Cow position:chr19:37109374-37109566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):30, 15

               
               
               Conread position:285-494
               
               
               Cow position:chr19:32666939-32666738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):13, 29

               
               
               Conread position:285-499
               
               
               Cow position:chr19:26167686-26167900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):79, 19

               
               
               Conread position:289-483
               
               
               Cow position:chr19:13121056-13121255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):70, 48

               
               
               Conread position:294-478
               
               
               Cow position:chr19:38910544-38910734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):64, 43

               
               
               Conread position:294-499
               
               
               Cow position:chr19:3857684-3857894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):70, 82

               
               
               Conread position:298-499
               
               
               Cow position:chr19:21176527-21176729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):62, 32

               
               
               Conread position:299-483
               
               
               Cow position:chr19:39795404-39795218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):25, 104

               
               
               Conread position:300-503
               
               
               Cow position:chr19:17260129-17259915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:303-500
               
               
               Cow position:chr19:53378915-53378714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):91, 14

               
               
               Conread position:305-484
               
               
               Cow position:chr19:30917723-30917917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:306-484
               
               
               Cow position:chr19:4485930-4486123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:307-499
               
               
               Cow position:chr19:39758733-39758535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):15, 26

               
               
               Conread position:308-499
               
               
               Cow position:chr19:12760893-12761091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):56, 17

               
               
               Conread position:310-440
               
               
               Cow position:chr19:12948844-12948976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:310-499
               
               
               Cow position:chr19:52356463-52356264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):27, 110

               
               
               Conread position:312-484
               
               
               Cow position:chr19:27968486-27968669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):49, 74

               
               
               Conread position:312-499
               
               
               Cow position:chr19:51285844-51285652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):48, 20

               
               
               Conread position:314-493
               
               
               Cow position:chr19:418027-417848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):112, 20

               
               
               Conread position:314-495
               
               
               Cow position:chr19:11211070-11211266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):50, 23

               
               
               Conread position:316-475
               
               
               Cow position:chr19:27105195-27105044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):110, 14

               
               
               Conread position:316-495
               
               
               Cow position:chr19:11191427-11191604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):17, 27

               
               
               Conread position:316-498
               
               
               Cow position:chr19:30471151-30471341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:317-484
               
               
               Cow position:chr19:6417811-6417636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):47, 82

               
               
               Conread position:318-486
               
               
               Cow position:chr19:49683661-49683840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:318-490
               
               
               Cow position:chr19:55999314-55999141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):13, 59

               
               
               Conread position:318-493
               
               
               Cow position:chr19:17068275-17068107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):104, 12

               
               
               Conread position:318-499
               
               
               Cow position:chr19:10970906-10971085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):108, 46

               
               
               Conread position:318-499
               
               
               Cow position:chr19:11816522-11816711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):43, 21

               
               
               Conread position:318-499
               
               
               Cow position:chr19:17355061-17354870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):46, 125

               
               
               Conread position:318-499
               
               
               Cow position:chr19:23304288-23304478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):46, 18

               
               
               Conread position:318-499
               
               
               Cow position:chr19:36845447-36845262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:318-503
               
               
               Cow position:chr19:46822912-46822718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):18, 135

               
               
               Conread position:319-499
               
               
               Cow position:chr19:8185408-8185215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:320-499
               
               
               Cow position:chr19:39384847-39385029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:320-503
               
               
               Cow position:chr19:16870579-16870768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:321-495
               
               
               Cow position:chr19:12747579-12747760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 13

               
               
               Conread position:321-499
               
               
               Cow position:chr19:41695474-41695649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):101, 44

               
               
               Conread position:321-501
               
               
               Cow position:chr19:40051199-40051383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):59, 10

               
               
               Conread position:321-507
               
               
               Cow position:chr19:51031385-51031579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):40, 9

               
               
               Conread position:321-509
               
               
               Cow position:chr19:14588601-14588404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):34, 9

               
               
               Conread position:322-495
               
               
               Cow position:chr19:24956046-24956225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):41, 8

               
               
               Conread position:323-499
               
               
               Cow position:chr19:30007382-30007204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):40, 117

               
               
               Conread position:323-504
               
               
               Cow position:chr19:47987042-47986866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):102, 7

               
               
               Conread position:324-495
               
               
               Cow position:chr19:729552-729730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):39, 95

               
               
               Conread position:324-499
               
               
               Cow position:chr19:39254253-39254433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:327-495
               
               
               Cow position:chr19:31768441-31768614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:334-479
               
               
               Cow position:chr19:49290272-49290425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):27, 80

               
               
               Conread position:334-484
               
               
               Cow position:chr19:41347554-41347402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 73

               
               
               Conread position:334-493
               
               
               Cow position:chr19:1033401-1033243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):88, 113

               
               
               Conread position:334-497
               
               
               Cow position:chr19:1553895-1553722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):59, 130

               
               
               Conread position:334-499
               
               
               Cow position:chr19:12698503-12698331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):37, 14

               
               
               Conread position:336-470
               
               
               Cow position:chr19:47772750-47772887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:336-494
               
               
               Cow position:chr19:10242744-10242595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):153, 50

               
               
               Conread position:336-495
               
               
               Cow position:chr19:34166552-34166383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:336-499
               
               
               Cow position:chr19:43373232-43373051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:336-506
               
               
               Cow position:chr19:51637229-51637044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:337-499
               
               
               Cow position:chr19:14581532-14581375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):89, 13

               
               
               Conread position:338-493
               
               
               Cow position:chr19:40658307-40658458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):88, 20

               
               
               Conread position:338-497
               
               
               Cow position:chr19:6280664-6280504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):88, 61

               
               
               Conread position:339-497
               
               
               Cow position:chr19:42515525-42515362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:340-495
               
               
               Cow position:chr19:15091965-15092120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):20, 59

               
               
               Conread position:359-499
               
               
               Cow position:chr19:25526431-25526296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):67, 29

               
               
               Conread position:360-484
               
               
               Cow position:chr19:35072900-35073026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:360-494
               
               
               Cow position:chr19:41585123-41584987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 66

               
               
               Conread position:360-495
               
               
               Cow position:chr19:12469663-12469794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:360-496
               
               
               Cow position:chr19:34608048-34608185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr19:5522007-5522143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):71, 41

               
               
               Conread position:360-499
               
               
               Cow position:chr19:30227674-30227532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr19:31652712-31652570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr19:44757329-44757468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):67, 127

               
               
               Conread position:360-503
               
               
               Cow position:chr19:54157584-54157729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):40, 86

               
               
               Conread position:360-504
               
               
               Cow position:chr19:53073008-53073155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:360-550
               
               
               Cow position:chr19:18984306-18984097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:361-492
               
               
               Cow position:chr19:43560745-43560612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:379-486
               
               
               Cow position:chr19:22167083-22167193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:90
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:390-499
               
               
               Cow position:chr19:33237296-33237186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:188-499
               
               
               Cow position:chr2:29394678-29394985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):24, 31

               
               
               Conread position:248-495
               
               
               Cow position:chr2:2437323-2437577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):29, 83

               
               
               Conread position:261-499
               
               
               Cow position:chr2:5300861-5300620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):50, 94

               
               
               Conread position:275-499
               
               
               Cow position:chr2:38837260-38837493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):89, 35

               
               
               Conread position:282-482
               
               
               Cow position:chr2:13317837-13317622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:283-493
               
               
               Cow position:chr2:68998567-68998348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:285-493
               
               
               Cow position:chr2:10842508-10842713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):72, 41

               
               
               Conread position:287-495
               
               
               Cow position:chr2:44313472-44313691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):72, 40

               
               
               Conread position:288-493
               
               
               Cow position:chr2:192239-192436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):50, 77

               
               
               Conread position:290-483
               
               
               Cow position:chr2:18243777-18243578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):49, 16

               
               
               Conread position:293-474
               
               
               Cow position:chr2:75562244-75562056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):68, 19

               
               
               Conread position:293-499
               
               
               Cow position:chr2:12139314-12139525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):49, 15

               
               
               Conread position:295-484
               
               
               Cow position:chr2:18589299-18589495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):12, 42

               
               
               Conread position:295-498
               
               
               Cow position:chr2:80275066-80275269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):38, 56

               
               
               Conread position:295-499
               
               
               Cow position:chr2:16488225-16488013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:298-490
               
               
               Cow position:chr2:30127058-30127257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):63, 13

               
               
               Conread position:299-483
               
               
               Cow position:chr2:2486076-2485884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):13, 29

               
               
               Conread position:299-499
               
               
               Cow position:chr2:78669692-78669901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):64, 11

               
               
               Conread position:300-494
               
               
               Cow position:chr2:16847416-16847209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:301-498
               
               
               Cow position:chr2:27173585-27173393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):33, 25

               
               
               Conread position:301-499
               
               
               Cow position:chr2:41040474-41040686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):34, 11

               
               
               Conread position:302-482
               
               
               Cow position:chr2:43139439-43139616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):117, 12

               
               
               Conread position:302-493
               
               
               Cow position:chr2:2365043-2364854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):36, 134

               
               
               Conread position:304-499
               
               
               Cow position:chr2:30954365-30954573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):33, 14

               
               
               Conread position:306-501
               
               
               Cow position:chr2:2754794-2754992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):30, 57

               
               
               Conread position:307-499
               
               
               Cow position:chr2:70449247-70449050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):21, 104

               
               
               Conread position:308-494
               
               
               Cow position:chr2:81481060-81480874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):20, 44

               
               
               Conread position:310-498
               
               
               Cow position:chr2:16409684-16409497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):118, 22

               
               
               Conread position:310-499
               
               
               Cow position:chr2:46300828-46300635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):28, 57

               
               
               Conread position:312-483
               
               
               Cow position:chr2:64465568-64465736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:312-499
               
               
               Cow position:chr2:19320219-19320023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):51, 22

               
               
               Conread position:312-499
               
               
               Cow position:chr2:46383261-46383442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):113, 6

               
               
               Conread position:312-504
               
               
               Cow position:chr2:76861241-76861437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):26, 39

               
               
               Conread position:313-483
               
               
               Cow position:chr2:46162171-46161997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:313-494
               
               
               Cow position:chr2:70908124-70908301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):25, 38

               
               
               Conread position:313-499
               
               
               Cow position:chr2:17492310-17492494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):15, 38

               
               
               Conread position:314-480
               
               
               Cow position:chr2:6039232-6039056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):47, 13

               
               
               Conread position:314-483
               
               
               Cow position:chr2:72126947-72126778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):108, 16

               
               
               Conread position:314-484
               
               
               Cow position:chr2:40489020-40488845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:314-484
               
               
               Cow position:chr2:47165613-47165791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:314-484
               
               
               Cow position:chr2:47879454-47879280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):23, 75

               
               
               Conread position:314-484
               
               
               Cow position:chr2:74070544-74070371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):50, 28

               
               
               Conread position:314-493
               
               
               Cow position:chr2:52151048-52151225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):15, 86

               
               
               Conread position:314-496
               
               
               Cow position:chr2:7194422-7194235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):50, 12

               
               
               Conread position:314-499
               
               
               Cow position:chr2:1304166-1303973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):48, 25

               
               
               Conread position:314-499
               
               
               Cow position:chr2:32048697-32048504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:314-499
               
               
               Cow position:chr2:36124652-36124457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):19, 153

               
               
               Conread position:314-499
               
               
               Cow position:chr2:66561817-66562017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:314-504
               
               
               Cow position:chr2:17940079-17940268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):93, 16

               
               
               Conread position:315-499
               
               
               Cow position:chr2:46312652-46312464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):47, 91

               
               
               Conread position:316-499
               
               
               Cow position:chr2:485789-485600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):48, 16

               
               
               Conread position:316-499
               
               
               Cow position:chr2:23301941-23301755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):45, 14

               
               
               Conread position:316-499
               
               
               Cow position:chr2:54700671-54700480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):45, 16

               
               
               Conread position:316-501
               
               
               Cow position:chr2:9476225-9476412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 90

               
               
               Conread position:316-503
               
               
               Cow position:chr2:39642963-39642770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):48, 32

               
               
               Conread position:317-501
               
               
               Cow position:chr2:16109532-16109717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):47, 105

               
               
               Conread position:318-480
               
               
               Cow position:chr2:55958871-55959040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):26, 93

               
               
               Conread position:318-493
               
               
               Cow position:chr2:44103461-44103635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):11, 44

               
               
               Conread position:318-499
               
               
               Cow position:chr2:14826493-14826300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:318-499
               
               
               Cow position:chr2:21950189-21949999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):19, 95

               
               
               Conread position:318-499
               
               
               Cow position:chr2:26361973-26361778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):18, 104

               
               
               Conread position:318-499
               
               
               Cow position:chr2:46317076-46316894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):89, 32

               
               
               Conread position:318-499
               
               
               Cow position:chr2:64323441-64323264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):15, 33

               
               
               Conread position:318-499
               
               
               Cow position:chr2:69199111-69199296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):50, 91

               
               
               Conread position:319-496
               
               
               Cow position:chr2:4016648-4016821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):106, 17

               
               
               Conread position:319-498
               
               
               Cow position:chr2:38658584-38658762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):107, 45

               
               
               Conread position:320-476
               
               
               Cow position:chr2:79245612-79245446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:320-484
               
               
               Cow position:chr2:46342938-46343109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):40, 77

               
               
               Conread position:320-485
               
               
               Cow position:chr2:9543522-9543348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):41, 14

               
               
               Conread position:320-499
               
               
               Cow position:chr2:19137679-19137866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):41, 85

               
               
               Conread position:320-499
               
               
               Cow position:chr2:56350700-56350893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:321-484
               
               
               Cow position:chr2:53491250-53491412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 80

               
               
               Conread position:321-499
               
               
               Cow position:chr2:15219320-15219137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:321-499
               
               
               Cow position:chr2:36117449-36117273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):86, 29

               
               
               Conread position:321-502
               
               
               Cow position:chr2:38619229-38619415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):43, 9

               
               
               Conread position:322-461
               
               
               Cow position:chr2:44076277-44076138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):16, 79

               
               
               Conread position:322-492
               
               
               Cow position:chr2:74078906-74079081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):39, 125

               
               
               Conread position:322-493
               
               
               Cow position:chr2:52484755-52484931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):42, 98

               
               
               Conread position:322-495
               
               
               Cow position:chr2:50913805-50913988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:322-499
               
               
               Cow position:chr2:21171811-21171628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):40, 12

               
               
               Conread position:322-499
               
               
               Cow position:chr2:46053682-46053494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):42, 12

               
               
               Conread position:323-468
               
               
               Cow position:chr2:58336014-58336168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:323-477
               
               
               Cow position:chr2:44063569-44063730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:323-499
               
               
               Cow position:chr2:39363216-39363026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):38, 9

               
               
               Conread position:324-484
               
               
               Cow position:chr2:39590463-39590296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:325-478
               
               
               Cow position:chr2:39068486-39068330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):39, 81

               
               
               Conread position:325-484
               
               
               Cow position:chr2:81493406-81493560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:326-470
               
               
               Cow position:chr2:8798254-8798111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):100, 46

               
               
               Conread position:326-495
               
               
               Cow position:chr2:39384463-39384633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):12, 97

               
               
               Conread position:327-484
               
               
               Cow position:chr2:19494420-19494253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):11, 80

               
               
               Conread position:329-476
               
               
               Cow position:chr2:41185653-41185504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):66, 127

               
               
               Conread position:332-492
               
               
               Cow position:chr2:276866-276707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):41, 79

               
               
               Conread position:332-493
               
               
               Cow position:chr2:72920654-72920815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):92, 46

               
               
               Conread position:332-501
               
               
               Cow position:chr2:49932021-49931851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:333-483
               
               
               Cow position:chr2:81294028-81293867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:334-484
               
               
               Cow position:chr2:43995128-43994974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):29, 72

               
               
               Conread position:334-493
               
               
               Cow position:chr2:5479505-5479663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:334-493
               
               
               Cow position:chr2:72612627-72612467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:334-494
               
               
               Cow position:chr2:21049137-21049303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):30, 72

               
               
               Conread position:334-496
               
               
               Cow position:chr2:31460147-31460307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:334-497
               
               
               Cow position:chr2:17966844-17967003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):94, 45

               
               
               Conread position:334-499
               
               
               Cow position:chr2:44198078-44197898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:334-500
               
               
               Cow position:chr2:10710126-10710291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):48, 64

               
               
               Conread position:336-484
               
               
               Cow position:chr2:45642297-45642449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):26, 64

               
               
               Conread position:336-484
               
               
               Cow position:chr2:68328656-68328814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:336-492
               
               
               Cow position:chr2:30384069-30384237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:336-499
               
               
               Cow position:chr2:24722081-24722247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:336-499
               
               
               Cow position:chr2:30351508-30351682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:336-499
               
               
               Cow position:chr2:45478406-45478573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):28, 70

               
               
               Conread position:336-499
               
               
               Cow position:chr2:71486971-71486802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:336-500
               
               
               Cow position:chr2:66480004-66480162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):86, 64

               
               
               Conread position:338-492
               
               
               Cow position:chr2:37113012-37113165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:338-499
               
               
               Cow position:chr2:15652942-15653089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:340-466
               
               
               Cow position:chr2:6258162-6258290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:343-500
               
               
               Cow position:chr2:50766660-50766495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:347-499
               
               
               Cow position:chr2:20900282-20900439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:352-499
               
               
               Cow position:chr2:35988445-35988595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:354-503
               
               
               Cow position:chr2:53575817-53575968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):43, 127

               
               
               Conread position:359-480
               
               
               Cow position:chr2:39350325-39350447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:359-496
               
               
               Cow position:chr2:75190829-75190691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):35, 23

               
               
               Conread position:359-502
               
               
               Cow position:chr2:47784950-47784805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):29, 105

               
               
               Conread position:360-484
               
               
               Cow position:chr2:37652416-37652287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:360-484
               
               
               Cow position:chr2:49716923-49717049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):40, 81

               
               
               Conread position:360-484
               
               
               Cow position:chr2:56338870-56338992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:360-494
               
               
               Cow position:chr2:52466286-52466424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:360-497
               
               
               Cow position:chr2:16669633-16669494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr2:2827907-2827767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:360-499
               
               
               Cow position:chr2:12686631-12686766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):66, 37

               
               
               Conread position:360-499
               
               
               Cow position:chr2:37224233-37224094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):66, 50

               
               
               Conread position:360-499
               
               
               Cow position:chr2:45907715-45907574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr2:53653016-53652875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr2:72528125-72527984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:366-499
               
               
               Cow position:chr2:20940842-20940709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:371-495
               
               
               Cow position:chr2:68870844-68870718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:389-499
               
               
               Cow position:chr2:61421033-61421144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:91
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:392-499
               
               
               Cow position:chr2:64773518-64773409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:90
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:403-495
               
               
               Cow position:chr2:80963528-80963622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:83
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:263-499
               
               
               Cow position:chr20:9033901-9034150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):35, 197

               
               
               Conread position:285-498
               
               
               Cow position:chr20:30744432-30744654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:286-494
               
               
               Cow position:chr20:14490532-14490316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):38, 127

               
               
               Conread position:286-499
               
               
               Cow position:chr20:37919090-37919304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):84, 13

               
               
               Conread position:299-500
               
               
               Cow position:chr20:24712115-24711906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:300-498
               
               
               Cow position:chr20:11359366-11359565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):63, 27

               
               
               Conread position:308-503
               
               
               Cow position:chr20:15496699-15496888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):21, 93

               
               
               Conread position:312-494
               
               
               Cow position:chr20:11188562-11188735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):111, 22

               
               
               Conread position:312-500
               
               
               Cow position:chr20:34097682-34097888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:313-499
               
               
               Cow position:chr20:34221742-34221545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):47, 21

               
               
               Conread position:314-468
               
               
               Cow position:chr20:11135504-11135657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):108, 13

               
               
               Conread position:314-475
               
               
               Cow position:chr20:13995069-13994904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):50, 23

               
               
               Conread position:314-480
               
               
               Cow position:chr20:2316168-2316340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):48, 20

               
               
               Conread position:314-484
               
               
               Cow position:chr20:6054247-6054428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:314-499
               
               
               Cow position:chr20:3141834-3141640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):49, 22

               
               
               Conread position:314-499
               
               
               Cow position:chr20:21279641-21279452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):49, 96

               
               
               Conread position:314-499
               
               
               Cow position:chr20:29990189-29990381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):40, 166

               
               
               Conread position:315-483
               
               
               Cow position:chr20:9100523-9100361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):112, 25

               
               
               Conread position:316-489
               
               
               Cow position:chr20:11822727-11822554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):13, 25

               
               
               Conread position:316-499
               
               
               Cow position:chr20:20459853-20459658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):13, 152

               
               
               Conread position:316-499
               
               
               Cow position:chr20:21291914-21291726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):93, 34

               
               
               Conread position:318-484
               
               
               Cow position:chr20:2823126-2822951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):32, 43

               
               
               Conread position:318-492
               
               
               Cow position:chr20:23846409-23846592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:318-493
               
               
               Cow position:chr20:23164862-23164679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):104, 80

               
               
               Conread position:318-496
               
               
               Cow position:chr20:41977898-41977724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):10, 55

               
               
               Conread position:318-499
               
               
               Cow position:chr20:13652124-13652301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):109, 16

               
               
               Conread position:319-483
               
               
               Cow position:chr20:21941682-21941515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):19, 87

               
               
               Conread position:321-493
               
               
               Cow position:chr20:13023252-13023430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):43, 9

               
               
               Conread position:322-495
               
               
               Cow position:chr20:354657-354831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):78, 28

               
               
               Conread position:323-498
               
               
               Cow position:chr20:21345689-21345500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):41, 14

               
               
               Conread position:323-499
               
               
               Cow position:chr20:35207954-35208143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):65, 11

               
               
               Conread position:324-486
               
               
               Cow position:chr20:23879856-23880028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):37, 153

               
               
               Conread position:325-499
               
               
               Cow position:chr20:5078525-5078338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):37, 7

               
               
               Conread position:327-468
               
               
               Cow position:chr20:14980260-14980408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):37, 89

               
               
               Conread position:327-497
               
               
               Cow position:chr20:14283170-14282987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:327-499
               
               
               Cow position:chr20:30710396-30710569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):64, 97

               
               
               Conread position:333-499
               
               
               Cow position:chr20:10188505-10188341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):94, 19

               
               
               Conread position:334-483
               
               
               Cow position:chr20:4891878-4892037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:334-493
               
               
               Cow position:chr20:34467721-34467879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):92, 68

               
               
               Conread position:334-497
               
               
               Cow position:chr20:6372324-6372493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):63, 123

               
               
               Conread position:334-499
               
               
               Cow position:chr20:12126061-12126238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:334-499
               
               
               Cow position:chr20:20099362-20099534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):26, 84

               
               
               Conread position:334-499
               
               
               Cow position:chr20:29845295-29845117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:334-503
               
               
               Cow position:chr20:27340553-27340377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:334-504
               
               
               Cow position:chr20:8245957-8245780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):27, 90

               
               
               Conread position:336-494
               
               
               Cow position:chr20:3599164-3599329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):29, 72

               
               
               Conread position:337-499
               
               
               Cow position:chr20:25474786-25474619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:343-500
               
               
               Cow position:chr20:36671200-36671366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):49, 99

               
               
               Conread position:344-493
               
               
               Cow position:chr20:23633391-23633541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:357-503
               
               
               Cow position:chr20:15515222-15515378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:360-473
               
               
               Cow position:chr20:36741669-36741555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:90
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:360-491
               
               
               Cow position:chr20:14433215-14433347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):47, 61

               
               
               Conread position:360-557
               
               
               Cow position:chr20:1824426-1824617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):72, 41

               
               
               Conread position:361-484
               
               
               Cow position:chr20:5814773-5814647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:361-499
               
               
               Cow position:chr20:19746175-19746037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):11, 37

               
               
               Conread position:371-504
               
               
               Cow position:chr20:22485056-22484920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):27, 21

               
               
               Conread position:389-499
               
               
               Cow position:chr20:580741-580854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:390-499
               
               
               Cow position:chr20:23678539-23678651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:91
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:225-489
               
               
               Cow position:chr21:3796578-3796838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):201, 6

               
               
               Conread position:279-498
               
               
               Cow position:chr21:40589158-40589394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:286-499
               
               
               Cow position:chr21:27145686-27145905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):52, 82

               
               
               Conread position:287-484
               
               
               Cow position:chr21:38720556-38720352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):77, 8

               
               
               Conread position:287-499
               
               
               Cow position:chr21:27409433-27409645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):21, 9

               
               
               Conread position:289-489
               
               
               Cow position:chr21:43656008-43655799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:294-490
               
               
               Cow position:chr21:8986328-8986117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):34, 12

               
               
               Conread position:299-483
               
               
               Cow position:chr21:8430796-8430997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:299-493
               
               
               Cow position:chr21:3430842-3430651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):26, 62

               
               
               Conread position:306-483
               
               
               Cow position:chr21:42145111-42144926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):17, 100

               
               
               Conread position:306-495
               
               
               Cow position:chr21:36508519-36508325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):57, 89

               
               
               Conread position:306-498
               
               
               Cow position:chr21:957946-957760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:308-498
               
               
               Cow position:chr21:9416526-9416337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):173, 24

               
               
               Conread position:311-475
               
               
               Cow position:chr21:16119878-16120050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:311-507
               
               
               Cow position:chr21:12473781-12473982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):53, 19

               
               
               Conread position:312-499
               
               
               Cow position:chr21:39319127-39319323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:313-499
               
               
               Cow position:chr21:32339468-32339653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):40, 79

               
               
               Conread position:314-470
               
               
               Cow position:chr21:30113704-30113863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:314-490
               
               
               Cow position:chr21:37299741-37299558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:314-494
               
               
               Cow position:chr21:23673026-23672837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:314-509
               
               
               Cow position:chr21:48482248-48482453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):23, 86

               
               
               Conread position:315-499
               
               
               Cow position:chr21:16797132-16796938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:315-499
               
               
               Cow position:chr21:37360959-37361155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:316-499
               
               
               Cow position:chr21:28244747-28244557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:316-502
               
               
               Cow position:chr21:3178121-3177931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):52, 14

               
               
               Conread position:317-503
               
               
               Cow position:chr21:8523910-8523724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):45, 25

               
               
               Conread position:318-493
               
               
               Cow position:chr21:34581430-34581598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):13, 78

               
               
               Conread position:318-499
               
               
               Cow position:chr21:3135592-3135782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):46, 16

               
               
               Conread position:318-499
               
               
               Cow position:chr21:41738186-41737995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):11, 69

               
               
               Conread position:318-504
               
               
               Cow position:chr21:34010120-34010314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):42, 18

               
               
               Conread position:319-499
               
               
               Cow position:chr21:5406088-5405903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:319-499
               
               
               Cow position:chr21:14452509-14452321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:319-502
               
               
               Cow position:chr21:13134873-13134685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):52, 169

               
               
               Conread position:320-483
               
               
               Cow position:chr21:18495492-18495324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):21, 80

               
               
               Conread position:320-499
               
               
               Cow position:chr21:27744305-27744112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:320-565
               
               
               Cow position:chr21:44732767-44733021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):18, 86

               
               
               Conread position:321-484
               
               
               Cow position:chr21:44251570-44251741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):42, 9

               
               
               Conread position:321-498
               
               
               Cow position:chr21:229409-229241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:322-499
               
               
               Cow position:chr21:976876-977061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:322-499
               
               
               Cow position:chr21:17184190-17184004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):42, 12

               
               
               Conread position:322-502
               
               
               Cow position:chr21:47713745-47713924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):68, 28

               
               
               Conread position:323-484
               
               
               Cow position:chr21:641854-641689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):41, 9

               
               
               Conread position:324-484
               
               
               Cow position:chr21:15271168-15271335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):35, 93

               
               
               Conread position:324-499
               
               
               Cow position:chr21:6051776-6051590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:324-499
               
               
               Cow position:chr21:40059288-40059117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):13, 77

               
               
               Conread position:327-495
               
               
               Cow position:chr21:33791129-33791290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:327-499
               
               
               Cow position:chr21:40551474-40551658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:327-503
               
               
               Cow position:chr21:2787536-2787715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:328-503
               
               
               Cow position:chr21:9736969-9736793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:332-493
               
               
               Cow position:chr21:4043785-4043623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:333-477
               
               
               Cow position:chr21:24797917-24797763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:334-484
               
               
               Cow position:chr21:42905141-42905296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:334-493
               
               
               Cow position:chr21:9590786-9590632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):92, 19

               
               
               Conread position:334-499
               
               
               Cow position:chr21:3585103-3585281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:334-503
               
               
               Cow position:chr21:12494112-12494289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):48, 43

               
               
               Conread position:335-500
               
               
               Cow position:chr21:18341479-18341305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:336-497
               
               
               Cow position:chr21:47763867-47764028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):73, 41

               
               
               Conread position:336-499
               
               
               Cow position:chr21:29978517-29978673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):90, 21

               
               
               Conread position:336-499
               
               
               Cow position:chr21:30970194-30970022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:336-499
               
               
               Cow position:chr21:36121488-36121314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:336-499
               
               
               Cow position:chr21:36763321-36763148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:336-499
               
               
               Cow position:chr21:41041207-41041031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 96

               
               
               Conread position:336-500
               
               
               Cow position:chr21:40291495-40291661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):16, 71

               
               
               Conread position:337-484
               
               
               Cow position:chr21:20318770-20318612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:337-486
               
               
               Cow position:chr21:30243435-30243581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):13, 82

               
               
               Conread position:337-496
               
               
               Cow position:chr21:21169250-21169405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):63, 30

               
               
               Conread position:338-484
               
               
               Cow position:chr21:30031138-30031284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):85, 72

               
               
               Conread position:338-497
               
               
               Cow position:chr21:7768683-7768527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):90, 63

               
               
               Conread position:338-499
               
               
               Cow position:chr21:20160935-20160763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:340-484
               
               
               Cow position:chr21:42007213-42007360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:343-499
               
               
               Cow position:chr21:17642748-17642897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:344-493
               
               
               Cow position:chr21:3015943-3016093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:346-492
               
               
               Cow position:chr21:15413953-15414100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:348-498
               
               
               Cow position:chr21:13043788-13043933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:353-495
               
               
               Cow position:chr21:29418805-29418659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr21:2536910-2537052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr21:15869913-15869777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):70, 34

               
               
               Conread position:360-504
               
               
               Cow position:chr21:31258695-31258548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:360-566
               
               
               Cow position:chr21:27568120-27567906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):42, 12

               
               
               Conread position:361-484
               
               
               Cow position:chr21:7424788-7424912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:362-499
               
               
               Cow position:chr21:8545796-8545936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:365-482
               
               
               Cow position:chr21:9990732-9990613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:374-499
               
               
               Cow position:chr21:13225930-13225802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:382-504
               
               
               Cow position:chr21:30157601-30157723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:396-499
               
               
               Cow position:chr21:15976823-15976720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 63

               
               
               Conread position:260-499
               
               
               Cow position:chr22:9372791-9372541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):104, 35

               
               
               Conread position:263-499
               
               
               Cow position:chr22:14372430-14372190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):62, 8

               
               
               Conread position:278-499
               
               
               Cow position:chr22:12777128-12777357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:279-501
               
               
               Cow position:chr22:1320732-1320512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):143, 19

               
               
               Conread position:279-505
               
               
               Cow position:chr22:4583808-4583573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):82, 31

               
               
               Conread position:284-484
               
               
               Cow position:chr22:9171643-9171443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):26, 58

               
               
               Conread position:284-499
               
               
               Cow position:chr22:2704541-2704318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):37, 47

               
               
               Conread position:285-499
               
               
               Cow position:chr22:14488172-14487955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 11

               
               
               Conread position:286-498
               
               
               Cow position:chr22:16916699-16916909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):116, 28

               
               
               Conread position:286-498
               
               
               Cow position:chr22:20035060-20034849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):50, 18

               
               
               Conread position:286-503
               
               
               Cow position:chr22:3257422-3257646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:288-486
               
               
               Cow position:chr22:6686490-6686689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):37, 17

               
               
               Conread position:291-499
               
               
               Cow position:chr22:4156580-4156797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):20, 37

               
               
               Conread position:292-499
               
               
               Cow position:chr22:33399253-33399469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):68, 115

               
               
               Conread position:295-499
               
               
               Cow position:chr22:18926588-18926376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):9, 38

               
               
               Conread position:295-499
               
               
               Cow position:chr22:23265414-23265632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:296-483
               
               
               Cow position:chr22:1309504-1309698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):14, 105

               
               
               Conread position:297-499
               
               
               Cow position:chr22:23630121-23630331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):40, 111

               
               
               Conread position:299-499
               
               
               Cow position:chr22:1326648-1326439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):26, 6

               
               
               Conread position:299-501
               
               
               Cow position:chr22:37140624-37140423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):123, 26

               
               
               Conread position:299-502
               
               
               Cow position:chr22:43130915-43131127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):65, 31

               
               
               Conread position:301-499
               
               
               Cow position:chr22:11696968-11697175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:303-493
               
               
               Cow position:chr22:5674031-5673837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:305-484
               
               
               Cow position:chr22:26189094-26188905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):59, 29

               
               
               Conread position:308-499
               
               
               Cow position:chr22:15490879-15490674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:310-479
               
               
               Cow position:chr22:12996591-12996769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:311-491
               
               
               Cow position:chr22:21484149-21483969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):21, 80

               
               
               Conread position:311-493
               
               
               Cow position:chr22:39880360-39880543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):16, 127

               
               
               Conread position:312-440
               
               
               Cow position:chr22:5677241-5677370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:312-471
               
               
               Cow position:chr22:42772755-42772593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):16, 94

               
               
               Conread position:312-500
               
               
               Cow position:chr22:1821373-1821565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):49, 75

               
               
               Conread position:314-477
               
               
               Cow position:chr22:13286662-13286490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):45, 102

               
               
               Conread position:314-484
               
               
               Cow position:chr22:4075668-4075852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:314-493
               
               
               Cow position:chr22:11033316-11033141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):112, 16

               
               
               Conread position:314-499
               
               
               Cow position:chr22:12681593-12681780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):11, 47

               
               
               Conread position:314-499
               
               
               Cow position:chr22:26268064-26267867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:314-539
               
               
               Cow position:chr22:26112581-26112343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):47, 127

               
               
               Conread position:316-491
               
               
               Cow position:chr22:8357790-8357615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):61, 51

               
               
               Conread position:316-496
               
               
               Cow position:chr22:3842828-3842640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):84, 18

               
               
               Conread position:317-479
               
               
               Cow position:chr22:13735070-13735234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):106, 83

               
               
               Conread position:317-494
               
               
               Cow position:chr22:8287392-8287207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):21, 90

               
               
               Conread position:318-492
               
               
               Cow position:chr22:27275675-27275489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:318-493
               
               
               Cow position:chr22:40371574-40371398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):11, 126

               
               
               Conread position:318-499
               
               
               Cow position:chr22:6096806-6096997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):42, 96

               
               
               Conread position:318-499
               
               
               Cow position:chr22:7075110-7074924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:319-492
               
               
               Cow position:chr22:530368-530551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):19, 82

               
               
               Conread position:319-494
               
               
               Cow position:chr22:12573414-12573229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:319-504
               
               
               Cow position:chr22:39907885-39908074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:320-483
               
               
               Cow position:chr22:3301138-3301303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):11, 24

               
               
               Conread position:320-484
               
               
               Cow position:chr22:8090328-8090497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):39, 14

               
               
               Conread position:320-484
               
               
               Cow position:chr22:43398206-43398037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):41, 10

               
               
               Conread position:320-495
               
               
               Cow position:chr22:4535115-4535305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):44, 16

               
               
               Conread position:320-499
               
               
               Cow position:chr22:12316013-12315831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):39, 17

               
               
               Conread position:320-500
               
               
               Cow position:chr22:6149190-6149372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):13, 31

               
               
               Conread position:320-504
               
               
               Cow position:chr22:8412737-8412543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):39, 14

               
               
               Conread position:321-497
               
               
               Cow position:chr22:12188267-12188459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:321-497
               
               
               Cow position:chr22:12195353-12195546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:322-474
               
               
               Cow position:chr22:10416432-10416277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:323-477
               
               
               Cow position:chr22:6127984-6128135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):103, 27

               
               
               Conread position:323-499
               
               
               Cow position:chr22:2876594-2876778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 11

               
               
               Conread position:324-478
               
               
               Cow position:chr22:24890425-24890262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:326-499
               
               
               Cow position:chr22:38815000-38815179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):35, 88

               
               
               Conread position:327-484
               
               
               Cow position:chr22:12678220-12678387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:327-499
               
               
               Cow position:chr22:27322499-27322334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):91, 66

               
               
               Conread position:332-483
               
               
               Cow position:chr22:9127594-9127444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):91, 64

               
               
               Conread position:334-469
               
               
               Cow position:chr22:32484746-32484879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:334-493
               
               
               Cow position:chr22:32617904-32617744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:335-480
               
               
               Cow position:chr22:43730475-43730324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):26, 71

               
               
               Conread position:335-484
               
               
               Cow position:chr22:42618188-42618035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):36, 73

               
               
               Conread position:337-493
               
               
               Cow position:chr22:46545525-46545682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:359-502
               
               
               Cow position:chr22:16564305-16564165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):64, 41

               
               
               Conread position:360-493
               
               
               Cow position:chr22:1074426-1074290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr22:18933552-18933696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr22:25254333-25254192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr22:43237248-43237388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:360-501
               
               
               Cow position:chr22:23675814-23675950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):66, 37

               
               
               Conread position:360-502
               
               
               Cow position:chr22:15737392-15737250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):63, 47

               
               
               Conread position:360-503
               
               
               Cow position:chr22:39471996-39472142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):47, 96

               
               
               Conread position:361-499
               
               
               Cow position:chr22:1991755-1991619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:361-499
               
               
               Cow position:chr22:6486122-6485982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):43, 82

               
               
               Conread position:372-490
               
               
               Cow position:chr22:1106217-1106096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:388-499
               
               
               Cow position:chr22:6326576-6326464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:389-500
               
               
               Cow position:chr22:21530228-21530340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:390-504
               
               
               Cow position:chr22:23176312-23176426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):47, 17

               
               
               Conread position:391-499
               
               
               Cow position:chr22:10553556-10553665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:394-498
               
               
               Cow position:chr22:25540125-25540020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:279-493
               
               
               Cow position:chr23:2047196-2046978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):7, 130

               
               
               Conread position:279-499
               
               
               Cow position:chr23:12405566-12405795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):5, 40

               
               
               Conread position:286-493
               
               
               Cow position:chr23:15262807-15262610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):140, 24

               
               
               Conread position:296-499
               
               
               Cow position:chr23:32621515-32621309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):17, 32

               
               
               Conread position:306-478
               
               
               Cow position:chr23:22238591-22238775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:308-495
               
               
               Cow position:chr23:39813729-39813529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):10, 192

               
               
               Conread position:309-484
               
               
               Cow position:chr23:2281962-2282141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):7, 100

               
               
               Conread position:311-499
               
               
               Cow position:chr23:35239577-35239377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):15, 174

               
               
               Conread position:312-456
               
               
               Cow position:chr23:20541055-20541202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:312-490
               
               
               Cow position:chr23:2425983-2425805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):17, 89

               
               
               Conread position:312-491
               
               
               Cow position:chr23:25933369-25933191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):76, 24

               
               
               Conread position:312-497
               
               
               Cow position:chr23:38267182-38267373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:312-500
               
               
               Cow position:chr23:19179148-19179350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):49, 18

               
               
               Conread position:313-493
               
               
               Cow position:chr23:987334-987514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):16, 33

               
               
               Conread position:314-484
               
               
               Cow position:chr23:26986050-26986230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):11, 167

               
               
               Conread position:314-498
               
               
               Cow position:chr23:32479795-32479991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:314-499
               
               
               Cow position:chr23:187395-187204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):50, 12

               
               
               Conread position:315-484
               
               
               Cow position:chr23:35718528-35718352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:316-503
               
               
               Cow position:chr23:10676077-10675873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:317-484
               
               
               Cow position:chr23:19739343-19739525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:318-480
               
               
               Cow position:chr23:4521666-4521840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):46, 18

               
               
               Conread position:318-484
               
               
               Cow position:chr23:7709998-7709831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):55, 70

               
               
               Conread position:318-499
               
               
               Cow position:chr23:2471221-2471028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:318-499
               
               
               Cow position:chr23:13520660-13520477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):46, 87

               
               
               Conread position:318-499
               
               
               Cow position:chr23:26283936-26283750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):75, 142

               
               
               Conread position:318-502
               
               
               Cow position:chr23:4291573-4291377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:319-484
               
               
               Cow position:chr23:534442-534268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):19, 87

               
               
               Conread position:319-493
               
               
               Cow position:chr23:2763857-2764036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:319-499
               
               
               Cow position:chr23:38245-38053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:319-499
               
               
               Cow position:chr23:2395383-2395572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):45, 100

               
               
               Conread position:319-499
               
               
               Cow position:chr23:23409928-23409759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:319-504
               
               
               Cow position:chr23:19565661-19565471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):42, 95

               
               
               Conread position:320-493
               
               
               Cow position:chr23:17597636-17597458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):43, 89

               
               
               Conread position:320-499
               
               
               Cow position:chr23:17462796-17462615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):18, 31

               
               
               Conread position:320-499
               
               
               Cow position:chr23:22530223-22530413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:321-440
               
               
               Cow position:chr23:31000007-30999884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:321-478
               
               
               Cow position:chr23:27849206-27849043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):42, 95

               
               
               Conread position:321-482
               
               
               Cow position:chr23:13553493-13553660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):52, 9

               
               
               Conread position:321-503
               
               
               Cow position:chr23:30617266-30617457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):43, 9

               
               
               Conread position:322-483
               
               
               Cow position:chr23:39775926-39775768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):110, 8

               
               
               Conread position:322-499
               
               
               Cow position:chr23:5436431-5436617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):42, 16

               
               
               Conread position:324-491
               
               
               Cow position:chr23:5723735-5723571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):72, 19

               
               
               Conread position:324-499
               
               
               Cow position:chr23:18417285-18417118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):100, 10

               
               
               Conread position:325-494
               
               
               Cow position:chr23:29480085-29479914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):11, 49

               
               
               Conread position:326-484
               
               
               Cow position:chr23:38992888-38993049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):42, 87

               
               
               Conread position:331-483
               
               
               Cow position:chr23:9726347-9726500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):62, 19

               
               
               Conread position:332-484
               
               
               Cow position:chr23:21664503-21664345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):29, 78

               
               
               Conread position:333-499
               
               
               Cow position:chr23:16797610-16797779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:334-451
               
               
               Cow position:chr23:33152995-33153116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:334-486
               
               
               Cow position:chr23:33232500-33232663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:334-494
               
               
               Cow position:chr23:28529751-28529924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:334-499
               
               
               Cow position:chr23:39573065-39573226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:336-483
               
               
               Cow position:chr23:32107554-32107709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):55, 134

               
               
               Conread position:336-484
               
               
               Cow position:chr23:35930146-35929991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):23, 81

               
               
               Conread position:336-497
               
               
               Cow position:chr23:164952-164787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:336-499
               
               
               Cow position:chr23:1480840-1480665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:360-484
               
               
               Cow position:chr23:1954443-1954320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):76, 37

               
               
               Conread position:360-494
               
               
               Cow position:chr23:20397302-20397438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):34, 85

               
               
               Conread position:360-497
               
               
               Cow position:chr23:22573741-22573881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:360-498
               
               
               Cow position:chr23:24779375-24779516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr23:11081423-11081282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):40, 115

               
               
               Conread position:360-499
               
               
               Cow position:chr23:11129399-11129259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):28, 14

               
               
               Conread position:360-499
               
               
               Cow position:chr23:21423931-21423793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):76, 42

               
               
               Conread position:360-502
               
               
               Cow position:chr23:769375-769519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:379-493
               
               
               Cow position:chr23:4279473-4279360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:90
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:389-499
               
               
               Cow position:chr23:39780891-39780780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:390-483
               
               
               Cow position:chr23:13599476-13599382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:81
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:392-495
               
               
               Cow position:chr23:4241508-4241612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:85
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:402-499
               
               
               Cow position:chr23:16699918-16700016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:82
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:5-169
               
               
               Cow position:chr24:10308995-10308836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:280-493
               
               
               Cow position:chr24:11595221-11595429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):11, 33

               
               
               Conread position:282-499
               
               
               Cow position:chr24:43499885-43499657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):45, 17

               
               
               Conread position:292-484
               
               
               Cow position:chr24:18484775-18484980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):36, 16

               
               
               Conread position:296-499
               
               
               Cow position:chr24:12200192-12200410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):26, 152

               
               
               Conread position:296-499
               
               
               Cow position:chr24:17689402-17689612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):67, 16

               
               
               Conread position:300-504
               
               
               Cow position:chr24:11840390-11840181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):62, 18

               
               
               Conread position:300-504
               
               
               Cow position:chr24:27149591-27149377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):23, 39

               
               
               Conread position:301-499
               
               
               Cow position:chr24:11028482-11028690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):63, 9

               
               
               Conread position:306-483
               
               
               Cow position:chr24:22129443-22129623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):58, 101

               
               
               Conread position:307-502
               
               
               Cow position:chr24:6103029-6102822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):15, 35

               
               
               Conread position:312-476
               
               
               Cow position:chr24:14587967-14587801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:312-499
               
               
               Cow position:chr24:28690881-28690684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):48, 181

               
               
               Conread position:312-499
               
               
               Cow position:chr24:36286760-36286568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):52, 20

               
               
               Conread position:314-440
               
               
               Cow position:chr24:32054840-32054705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:314-480
               
               
               Cow position:chr24:27719337-27719509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):47, 83

               
               
               Conread position:314-494
               
               
               Cow position:chr24:7777450-7777624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):26, 15

               
               
               Conread position:314-495
               
               
               Cow position:chr24:31383301-31383119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):48, 92

               
               
               Conread position:314-497
               
               
               Cow position:chr24:16089423-16089229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:316-482
               
               
               Cow position:chr24:34301845-34302023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):5, 37

               
               
               Conread position:316-486
               
               
               Cow position:chr24:230473-230295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):7, 87

               
               
               Conread position:316-499
               
               
               Cow position:chr24:26848551-26848734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):72, 11

               
               
               Conread position:317-483
               
               
               Cow position:chr24:34768385-34768553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:317-499
               
               
               Cow position:chr24:3494061-3493883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):16, 34

               
               
               Conread position:317-499
               
               
               Cow position:chr24:28024457-28024278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):28, 48

               
               
               Conread position:318-475
               
               
               Cow position:chr24:25482433-25482277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):13, 41

               
               
               Conread position:318-497
               
               
               Cow position:chr24:39960821-39960997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):106, 15

               
               
               Conread position:318-498
               
               
               Cow position:chr24:39523261-39523449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):41, 94

               
               
               Conread position:318-499
               
               
               Cow position:chr24:10300263-10300075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:318-499
               
               
               Cow position:chr24:25970896-25971075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):55, 16

               
               
               Conread position:318-503
               
               
               Cow position:chr24:250348-250543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):46, 14

               
               
               Conread position:319-468
               
               
               Cow position:chr24:43027037-43027197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):44, 17

               
               
               Conread position:319-492
               
               
               Cow position:chr24:6151965-6151791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):113, 33

               
               
               Conread position:320-479
               
               
               Cow position:chr24:38006535-38006699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):13, 31

               
               
               Conread position:320-484
               
               
               Cow position:chr24:19187109-19186951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):11, 31

               
               
               Conread position:320-499
               
               
               Cow position:chr24:44040835-44041006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:320-503
               
               
               Cow position:chr24:18750896-18750702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):44, 16

               
               
               Conread position:321-498
               
               
               Cow position:chr24:17955279-17955443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):102, 43

               
               
               Conread position:321-498
               
               
               Cow position:chr24:37252342-37252156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):41, 15

               
               
               Conread position:321-509
               
               
               Cow position:chr24:2992692-2992896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):17, 125

               
               
               Conread position:322-502
               
               
               Cow position:chr24:27810333-27810153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):42, 12

               
               
               Conread position:323-492
               
               
               Cow position:chr24:34390456-34390282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 74

               
               
               Conread position:323-499
               
               
               Cow position:chr24:5152709-5152522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):38, 13

               
               
               Conread position:324-480
               
               
               Cow position:chr24:12121082-12120914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:325-499
               
               
               Cow position:chr24:17104391-17104571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 11

               
               
               Conread position:326-478
               
               
               Cow position:chr24:13610482-13610328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):100, 50

               
               
               Conread position:327-484
               
               
               Cow position:chr24:27202249-27202102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):99, 7

               
               
               Conread position:328-499
               
               
               Cow position:chr24:27553279-27553094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):36, 140

               
               
               Conread position:328-499
               
               
               Cow position:chr24:34742929-34742752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:333-499
               
               
               Cow position:chr24:33944580-33944400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:334-485
               
               
               Cow position:chr24:35217560-35217407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:334-493
               
               
               Cow position:chr24:15340292-15340450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):92, 37

               
               
               Conread position:334-504
               
               
               Cow position:chr24:28355531-28355700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):152, 69

               
               
               Conread position:336-479
               
               
               Cow position:chr24:28553401-28553545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):27, 66

               
               
               Conread position:336-490
               
               
               Cow position:chr24:17832658-17832813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:336-495
               
               
               Cow position:chr24:23000172-23000016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):37, 41

               
               
               Conread position:336-499
               
               
               Cow position:chr24:39218381-39218553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:336-499
               
               
               Cow position:chr24:41406065-41405893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:360-477
               
               
               Cow position:chr24:33098334-33098452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:360-480
               
               
               Cow position:chr24:36554563-36554680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):70, 41

               
               
               Conread position:360-484
               
               
               Cow position:chr24:18810972-18810845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:360-484
               
               
               Cow position:chr24:22420101-22419974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:360-484
               
               
               Cow position:chr24:31816715-31816592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):62, 43

               
               
               Conread position:360-495
               
               
               Cow position:chr24:41565962-41566096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):46, 93

               
               
               Conread position:360-499
               
               
               Cow position:chr24:9300768-9300626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr24:18741427-18741573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr24:32890909-32891045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):66, 41

               
               
               Conread position:360-503
               
               
               Cow position:chr24:16510110-16509972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):66, 37

               
               
               Conread position:371-499
               
               
               Cow position:chr24:19465788-19465918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:389-498
               
               
               Cow position:chr24:18313823-18313933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:282-484
               
               
               Cow position:chr25:20069957-20069750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):91, 36

               
               
               Conread position:285-484
               
               
               Cow position:chr25:15999302-15999516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:286-493
               
               
               Cow position:chr25:18026075-18026290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:289-500
               
               
               Cow position:chr25:20008375-20008154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):15, 24

               
               
               Conread position:295-483
               
               
               Cow position:chr25:30619307-30619100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:296-482
               
               
               Cow position:chr25:8347882-8347689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):51, 31

               
               
               Conread position:297-503
               
               
               Cow position:chr25:37965495-37965274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:297-504
               
               
               Cow position:chr25:32745567-32745354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):28, 9

               
               
               Conread position:304-493
               
               
               Cow position:chr25:34655068-34655257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):25, 72

               
               
               Conread position:306-489
               
               
               Cow position:chr25:36785476-36785659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):32, 24

               
               
               Conread position:307-494
               
               
               Cow position:chr25:2586374-2586199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:310-494
               
               
               Cow position:chr25:15573596-15573414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):113, 20

               
               
               Conread position:312-490
               
               
               Cow position:chr25:15305897-15305708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:314-498
               
               
               Cow position:chr25:19106617-19106440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):47, 74

               
               
               Conread position:316-495
               
               
               Cow position:chr25:11316113-11315929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):45, 19

               
               
               Conread position:316-499
               
               
               Cow position:chr25:36872842-36873035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:318-456
               
               
               Cow position:chr25:25098066-25097926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:318-480
               
               
               Cow position:chr25:24984216-24984375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):104, 82

               
               
               Conread position:318-486
               
               
               Cow position:chr25:38958156-38957989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):23, 64

               
               
               Conread position:318-492
               
               
               Cow position:chr25:24202797-24202984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:318-499
               
               
               Cow position:chr25:432837-433027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:318-499
               
               
               Cow position:chr25:11957016-11956825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):20, 102

               
               
               Conread position:321-484
               
               
               Cow position:chr25:35802458-35802627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 16

               
               
               Conread position:321-496
               
               
               Cow position:chr25:5922506-5922682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):43, 86

               
               
               Conread position:321-499
               
               
               Cow position:chr25:1823893-1824076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):11, 30

               
               
               Conread position:322-478
               
               
               Cow position:chr25:6891110-6891272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):65, 51

               
               
               Conread position:322-496
               
               
               Cow position:chr25:18201725-18201905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):41, 8

               
               
               Conread position:323-499
               
               
               Cow position:chr25:18551127-18551313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):43, 136

               
               
               Conread position:324-484
               
               
               Cow position:chr25:21893539-21893374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 86

               
               
               Conread position:334-493
               
               
               Cow position:chr25:11373713-11373873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:334-493
               
               
               Cow position:chr25:14164393-14164222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:336-480
               
               
               Cow position:chr25:23769704-23769847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):90, 67

               
               
               Conread position:336-484
               
               
               Cow position:chr25:11543408-11543556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):28, 7

               
               
               Conread position:336-499
               
               
               Cow position:chr25:9616031-9615858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:336-499
               
               
               Cow position:chr25:14513299-14513136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):37, 41

               
               
               Conread position:341-502
               
               
               Cow position:chr25:8596291-8596452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):79, 9

               
               
               Conread position:346-502
               
               
               Cow position:chr25:33776230-33776073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:348-503
               
               
               Cow position:chr25:12773457-12773297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:360-478
               
               
               Cow position:chr25:18568054-18568175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:360-492
               
               
               Cow position:chr25:26989361-26989225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr25:31514344-31514202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:360-503
               
               
               Cow position:chr25:7298733-7298885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:360-503
               
               
               Cow position:chr25:9640874-9641020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:361-482
               
               
               Cow position:chr25:23323656-23323528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:361-492
               
               
               Cow position:chr25:7380678-7380811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):32, 52

               
               
               Conread position:361-509
               
               
               Cow position:chr25:10817271-10817412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):65, 38

               
               
               Conread position:389-480
               
               
               Cow position:chr25:17775129-17775037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:93
               
               
               Alignm identity:79
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:389-503
               
               
               Cow position:chr25:35624747-35624862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:163-499
               
               
               Cow position:chr26:33252936-33253276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):9, 84

               
               
               Conread position:290-499
               
               
               Cow position:chr26:6794404-6794185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:297-499
               
               
               Cow position:chr26:8649286-8649087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):40, 15

               
               
               Conread position:298-484
               
               
               Cow position:chr26:33175477-33175660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):101, 28

               
               
               Conread position:300-503
               
               
               Cow position:chr26:3699306-3699105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):33, 143

               
               
               Conread position:301-487
               
               
               Cow position:chr26:2930015-2930207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:302-499
               
               
               Cow position:chr26:4854791-4854585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):9, 112

               
               
               Conread position:306-490
               
               
               Cow position:chr26:33037984-33038174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):54, 103

               
               
               Conread position:314-471
               
               
               Cow position:chr26:21311684-21311856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):49, 18

               
               
               Conread position:314-487
               
               
               Cow position:chr26:7524986-7525155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):112, 29

               
               
               Conread position:314-499
               
               
               Cow position:chr26:3192217-3192403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):49, 16

               
               
               Conread position:314-499
               
               
               Cow position:chr26:34314912-34314731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):112, 60

               
               
               Conread position:314-503
               
               
               Cow position:chr26:16166472-16166659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):93, 13

               
               
               Conread position:316-486
               
               
               Cow position:chr26:34026809-34026984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:316-490
               
               
               Cow position:chr26:10502957-10502778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):15, 85

               
               
               Conread position:316-499
               
               
               Cow position:chr26:6714068-6714262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):47, 18

               
               
               Conread position:316-499
               
               
               Cow position:chr26:34060568-34060373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:317-503
               
               
               Cow position:chr26:16550218-16550020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:318-465
               
               
               Cow position:chr26:8257022-8256873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:318-483
               
               
               Cow position:chr26:13828283-13828125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):105, 18

               
               
               Conread position:318-484
               
               
               Cow position:chr26:23106202-23106373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:318-493
               
               
               Cow position:chr26:23602132-23602308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):11, 145

               
               
               Conread position:318-504
               
               
               Cow position:chr26:20291463-20291657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):46, 94

               
               
               Conread position:319-503
               
               
               Cow position:chr26:22864287-22864471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):63, 47

               
               
               Conread position:320-499
               
               
               Cow position:chr26:12893202-12893387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):44, 88

               
               
               Conread position:321-499
               
               
               Cow position:chr26:12807078-12807260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):10, 89

               
               
               Conread position:321-499
               
               
               Cow position:chr26:17398802-17398616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:322-484
               
               
               Cow position:chr26:24453683-24453855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):16, 47

               
               
               Conread position:323-470
               
               
               Cow position:chr26:32831351-32831513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:323-492
               
               
               Cow position:chr26:26048297-26048458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):103, 65

               
               
               Conread position:324-498
               
               
               Cow position:chr26:26244945-26245130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):37, 132

               
               
               Conread position:327-494
               
               
               Cow position:chr26:16795992-16796166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):37, 79

               
               
               Conread position:328-484
               
               
               Cow position:chr26:11371118-11370964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):94, 62

               
               
               Conread position:334-490
               
               
               Cow position:chr26:11875011-11875172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):29, 74

               
               
               Conread position:334-493
               
               
               Cow position:chr26:23109235-23109075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:334-493
               
               
               Cow position:chr26:28244966-28245126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:334-499
               
               
               Cow position:chr26:5407193-5407019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:335-486
               
               
               Cow position:chr26:15132853-15132690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:336-496
               
               
               Cow position:chr26:31779757-31779590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:336-499
               
               
               Cow position:chr26:6823371-6823199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):28, 149

               
               
               Conread position:336-502
               
               
               Cow position:chr26:8187085-8186914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):24, 84

               
               
               Conread position:337-472
               
               
               Cow position:chr26:32842573-32842720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):27, 118

               
               
               Conread position:338-513
               
               
               Cow position:chr26:2994490-2994675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):26, 81

               
               
               Conread position:359-495
               
               
               Cow position:chr26:9501891-9501752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:360-484
               
               
               Cow position:chr26:25225551-25225678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:360-484
               
               
               Cow position:chr26:31173451-31173324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:360-490
               
               
               Cow position:chr26:8811309-8811176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:360-494
               
               
               Cow position:chr26:5168571-5168438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):68, 43

               
               
               Conread position:360-499
               
               
               Cow position:chr26:21822869-21823005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):64, 41

               
               
               Conread position:360-499
               
               
               Cow position:chr26:29663975-29664119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr26:31633910-31633768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr26:32353543-32353680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):66, 30

               
               
               Conread position:361-498
               
               
               Cow position:chr26:32563526-32563390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):71, 93

               
               
               Conread position:361-499
               
               
               Cow position:chr26:32834396-32834539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:371-484
               
               
               Cow position:chr26:26407623-26407735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):55, 39

               
               
               Conread position:373-499
               
               
               Cow position:chr26:16435484-16435616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:378-484
               
               
               Cow position:chr26:7154030-7153924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:88
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):51, 68

               
               
               Conread position:382-499
               
               
               Cow position:chr26:19774142-19774259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):41, 29

               
               
               Conread position:386-500
               
               
               Cow position:chr26:33691334-33691449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:388-499
               
               
               Cow position:chr26:8353121-8353009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:89
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:274-500
               
               
               Cow position:chr27:23632304-23632534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):38, 148

               
               
               Conread position:276-482
               
               
               Cow position:chr27:23495994-23495792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):51, 9

               
               
               Conread position:287-509
               
               
               Cow position:chr27:29236270-29236507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):49, 29

               
               
               Conread position:289-464
               
               
               Cow position:chr27:14965883-14965708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):134, 41

               
               
               Conread position:289-484
               
               
               Cow position:chr27:22220266-22220472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):75, 21

               
               
               Conread position:293-502
               
               
               Cow position:chr27:25382419-25382215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):36, 11

               
               
               Conread position:301-498
               
               
               Cow position:chr27:20548547-20548743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):126, 49

               
               
               Conread position:309-499
               
               
               Cow position:chr27:18435386-18435200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):24, 42

               
               
               Conread position:312-470
               
               
               Cow position:chr27:17948010-17948173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:313-486
               
               
               Cow position:chr27:2949578-2949407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):50, 95

               
               
               Conread position:313-495
               
               
               Cow position:chr27:20749262-20749081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):60, 19

               
               
               Conread position:314-470
               
               
               Cow position:chr27:18215418-18215260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):50, 20

               
               
               Conread position:314-499
               
               
               Cow position:chr27:15867144-15867323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):109, 13

               
               
               Conread position:314-503
               
               
               Cow position:chr27:30914746-30914947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):15, 24

               
               
               Conread position:315-499
               
               
               Cow position:chr27:18491305-18491489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):20, 83

               
               
               Conread position:315-499
               
               
               Cow position:chr27:29388422-29388605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):18, 45

               
               
               Conread position:316-470
               
               
               Cow position:chr27:27020356-27020193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:316-496
               
               
               Cow position:chr27:19991889-19992084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):22, 82

               
               
               Conread position:317-484
               
               
               Cow position:chr27:7343686-7343510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:318-483
               
               
               Cow position:chr27:26118251-26118417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):91, 32

               
               
               Conread position:318-484
               
               
               Cow position:chr27:26226544-26226372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):46, 22

               
               
               Conread position:318-493
               
               
               Cow position:chr27:22212917-22213085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):11, 79

               
               
               Conread position:318-495
               
               
               Cow position:chr27:22560083-22559894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):42, 68

               
               
               Conread position:318-498
               
               
               Cow position:chr27:5553216-5553402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):52, 18

               
               
               Conread position:318-499
               
               
               Cow position:chr27:20812667-20812838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):63, 71

               
               
               Conread position:318-499
               
               
               Cow position:chr27:24303686-24303880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:318-501
               
               
               Cow position:chr27:19779623-19779813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:319-491
               
               
               Cow position:chr27:24223700-24223876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):44, 11

               
               
               Conread position:319-493
               
               
               Cow position:chr27:15434076-15434252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:320-499
               
               
               Cow position:chr27:19452742-19452935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:320-499
               
               
               Cow position:chr27:19932814-19933002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):44, 10

               
               
               Conread position:320-501
               
               
               Cow position:chr27:8790997-8790808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):41, 66

               
               
               Conread position:321-499
               
               
               Cow position:chr27:26980219-26980029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:321-501
               
               
               Cow position:chr27:20514573-20514758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):43, 11

               
               
               Conread position:321-519
               
               
               Cow position:chr27:11561521-11561731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:322-495
               
               
               Cow position:chr27:25809770-25809586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):8, 69

               
               
               Conread position:324-484
               
               
               Cow position:chr27:29246394-29246229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):45, 12

               
               
               Conread position:324-499
               
               
               Cow position:chr27:13940800-13940624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):40, 12

               
               
               Conread position:325-495
               
               
               Cow position:chr27:26087070-26087245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):38, 84

               
               
               Conread position:328-490
               
               
               Cow position:chr27:7412146-7412317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):16, 85

               
               
               Conread position:334-496
               
               
               Cow position:chr27:28177949-28177786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):88, 136

               
               
               Conread position:334-498
               
               
               Cow position:chr27:28260760-28260603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):98, 25

               
               
               Conread position:334-500
               
               
               Cow position:chr27:7847485-7847654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:334-500
               
               
               Cow position:chr27:15865988-15866153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):87, 38

               
               
               Conread position:334-502
               
               
               Cow position:chr27:14169170-14169338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):92, 21

               
               
               Conread position:336-439
               
               
               Cow position:chr27:1059055-1058951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:88
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:336-480
               
               
               Cow position:chr27:26807787-26807651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:336-499
               
               
               Cow position:chr27:21951219-21951045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:342-496
               
               
               Cow position:chr27:26317833-26317995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):21, 154

               
               
               Conread position:360-498
               
               
               Cow position:chr27:22254584-22254728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr27:16705047-16705184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):68, 33

               
               
               Conread position:360-499
               
               
               Cow position:chr27:27747674-27747532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:360-503
               
               
               Cow position:chr27:17908467-17908322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):40, 99

               
               
               Conread position:361-484
               
               
               Cow position:chr27:232346-232472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:361-521
               
               
               Cow position:chr27:23177517-23177358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):66, 48

               
               
               Conread position:362-502
               
               
               Cow position:chr27:212747-212891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):31, 120

               
               
               Conread position:389-484
               
               
               Cow position:chr27:30489588-30489492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:81
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:233-495
               
               
               Cow position:chr28:7697679-7697950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):128, 70

               
               
               Conread position:269-430
               
               
               Cow position:chr28:25283855-25283694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):29, 129

               
               
               Conread position:279-499
               
               
               Cow position:chr28:3424037-3423805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):33, 16

               
               
               Conread position:279-499
               
               
               Cow position:chr28:4307639-4307869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):43, 33

               
               
               Conread position:284-501
               
               
               Cow position:chr28:7350900-7350680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):45, 10

               
               
               Conread position:286-483
               
               
               Cow position:chr28:17620110-17620317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):74, 26

               
               
               Conread position:288-484
               
               
               Cow position:chr28:2077742-2077543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):71, 24

               
               
               Conread position:288-499
               
               
               Cow position:chr28:26982499-26982710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):42, 16

               
               
               Conread position:289-493
               
               
               Cow position:chr28:2593915-2593715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:299-499
               
               
               Cow position:chr28:10615713-10615918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):64, 110

               
               
               Conread position:299-503
               
               
               Cow position:chr28:2820004-2819798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):21, 9

               
               
               Conread position:300-478
               
               
               Cow position:chr28:24646821-24646640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):22, 106

               
               
               Conread position:305-499
               
               
               Cow position:chr28:13048054-13048256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:305-499
               
               
               Cow position:chr28:24707129-24706925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):96, 32

               
               
               Conread position:308-484
               
               
               Cow position:chr28:4027239-4027420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):16, 70

               
               
               Conread position:310-483
               
               
               Cow position:chr28:6563669-6563853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):54, 26

               
               
               Conread position:312-484
               
               
               Cow position:chr28:9740682-9740509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:312-487
               
               
               Cow position:chr28:24726226-24726397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):27, 50

               
               
               Conread position:312-490
               
               
               Cow position:chr28:1930686-1930859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):114, 18

               
               
               Conread position:312-493
               
               
               Cow position:chr28:24651391-24651572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):17, 95

               
               
               Conread position:312-499
               
               
               Cow position:chr28:11307295-11307491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):49, 24

               
               
               Conread position:313-487
               
               
               Cow position:chr28:5805885-5805707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):50, 73

               
               
               Conread position:313-499
               
               
               Cow position:chr28:7964464-7964650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):13, 39

               
               
               Conread position:314-484
               
               
               Cow position:chr28:3678582-3678405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:314-498
               
               
               Cow position:chr28:4022892-4022701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):50, 13

               
               
               Conread position:314-498
               
               
               Cow position:chr28:11866447-11866637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):47, 22

               
               
               Conread position:314-499
               
               
               Cow position:chr28:6059249-6059442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:314-499
               
               
               Cow position:chr28:10053109-10053297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):19, 94

               
               
               Conread position:314-565
               
               
               Cow position:chr28:6301305-6301044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):51, 23

               
               
               Conread position:316-503
               
               
               Cow position:chr28:21008452-21008641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):46, 18

               
               
               Conread position:317-499
               
               
               Cow position:chr28:3725991-3726181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):45, 15

               
               
               Conread position:318-480
               
               
               Cow position:chr28:16200522-16200696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:318-490
               
               
               Cow position:chr28:12974094-12973918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):15, 35

               
               
               Conread position:318-496
               
               
               Cow position:chr28:25728398-25728225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):105, 19

               
               
               Conread position:318-497
               
               
               Cow position:chr28:34830372-34830184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:318-499
               
               
               Cow position:chr28:19038800-19038991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):10, 15

               
               
               Conread position:319-477
               
               
               Cow position:chr28:11828742-11828912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:319-490
               
               
               Cow position:chr28:21845168-21844994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):44, 88

               
               
               Conread position:319-499
               
               
               Cow position:chr28:19217028-19216850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):54, 17

               
               
               Conread position:321-490
               
               
               Cow position:chr28:17740039-17739859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):39, 13

               
               
               Conread position:321-497
               
               
               Cow position:chr28:10959014-10958832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):41, 84

               
               
               Conread position:321-499
               
               
               Cow position:chr28:4881034-4881212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):39, 79

               
               
               Conread position:321-499
               
               
               Cow position:chr28:5204399-5204223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):61, 9

               
               
               Conread position:321-503
               
               
               Cow position:chr28:10978051-10977865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):43, 11

               
               
               Conread position:322-483
               
               
               Cow position:chr28:3143672-3143834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):73, 10

               
               
               Conread position:322-484
               
               
               Cow position:chr28:26960699-26960866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):41, 88

               
               
               Conread position:322-499
               
               
               Cow position:chr28:5144302-5144493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):41, 13

               
               
               Conread position:322-499
               
               
               Cow position:chr28:13448326-13448151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):101, 8

               
               
               Conread position:323-499
               
               
               Cow position:chr28:4823813-4823632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):76, 7

               
               
               Conread position:325-483
               
               
               Cow position:chr28:23410123-23410279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):70, 39

               
               
               Conread position:325-484
               
               
               Cow position:chr28:3492577-3492741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 5

               
               
               Conread position:325-501
               
               
               Cow position:chr28:23793110-23793283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:328-499
               
               
               Cow position:chr28:8167158-8167326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):100, 16

               
               
               Conread position:334-493
               
               
               Cow position:chr28:22362445-22362287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):88, 62

               
               
               Conread position:334-499
               
               
               Cow position:chr28:7008779-7008950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):26, 78

               
               
               Conread position:334-501
               
               
               Cow position:chr28:4379498-4379666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:335-493
               
               
               Cow position:chr28:4016724-4016565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):28, 68

               
               
               Conread position:338-492
               
               
               Cow position:chr28:31649261-31649114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:341-496
               
               
               Cow position:chr28:25400062-25399900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):54, 117

               
               
               Conread position:359-497
               
               
               Cow position:chr28:5236042-5235911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:360-495
               
               
               Cow position:chr28:16569971-16569837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr28:5232105-5231966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):33, 67

               
               
               Conread position:360-499
               
               
               Cow position:chr28:5674039-5673903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):70, 37

               
               
               Conread position:360-499
               
               
               Cow position:chr28:20397201-20397342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr28:26743798-26743654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:361-498
               
               
               Cow position:chr28:26530701-26530837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):65, 35

               
               
               Conread position:389-499
               
               
               Cow position:chr28:8149493-8149604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:254-493
               
               
               Cow position:chr29:10846800-10847038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):22, 66

               
               
               Conread position:267-490
               
               
               Cow position:chr29:11050920-11050695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):27, 40

               
               
               Conread position:284-476
               
               
               Cow position:chr29:3192670-3192871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:288-493
               
               
               Cow position:chr29:27487420-27487213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):114, 48

               
               
               Conread position:292-499
               
               
               Cow position:chr29:8798776-8798994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:296-490
               
               
               Cow position:chr29:2219610-2219417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):130, 54

               
               
               Conread position:296-494
               
               
               Cow position:chr29:13028684-13028466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:296-499
               
               
               Cow position:chr29:1933342-1933550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):71, 10

               
               
               Conread position:299-499
               
               
               Cow position:chr29:5046884-5046674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):32, 36

               
               
               Conread position:301-459
               
               
               Cow position:chr29:1992265-1992425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:303-495
               
               
               Cow position:chr29:27042498-27042297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):15, 41

               
               
               Conread position:304-486
               
               
               Cow position:chr29:6636306-6636113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):28, 113

               
               
               Conread position:308-484
               
               
               Cow position:chr29:12025266-12025437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):115, 22

               
               
               Conread position:310-491
               
               
               Cow position:chr29:30294649-30294844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:313-484
               
               
               Cow position:chr29:28420974-28420791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:314-481
               
               
               Cow position:chr29:25432668-25432492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):50, 18

               
               
               Conread position:314-482
               
               
               Cow position:chr29:18605452-18605622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):76, 127

               
               
               Conread position:314-484
               
               
               Cow position:chr29:936419-936243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):49, 89

               
               
               Conread position:316-495
               
               
               Cow position:chr29:28775263-28775438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):111, 11

               
               
               Conread position:316-499
               
               
               Cow position:chr29:16200259-16200457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:316-499
               
               
               Cow position:chr29:17297342-17297157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):15, 35

               
               
               Conread position:316-499
               
               
               Cow position:chr29:26631263-26631062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:318-484
               
               
               Cow position:chr29:7414705-7414537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):56, 12

               
               
               Conread position:318-493
               
               
               Cow position:chr29:43313411-43313235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):11, 141

               
               
               Conread position:318-499
               
               
               Cow position:chr29:26211265-26211073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:318-499
               
               
               Cow position:chr29:31934588-31934400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):41, 81

               
               
               Conread position:318-500
               
               
               Cow position:chr29:4440994-4441184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):46, 16

               
               
               Conread position:319-492
               
               
               Cow position:chr29:396613-396434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):45, 91

               
               
               Conread position:322-492
               
               
               Cow position:chr29:109878-109715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:325-489
               
               
               Cow position:chr29:40889483-40889648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:327-483
               
               
               Cow position:chr29:7040666-7040835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):33, 7

               
               
               Conread position:329-477
               
               
               Cow position:chr29:36357329-36357169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:332-492
               
               
               Cow position:chr29:5064962-5064803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):29, 68

               
               
               Conread position:332-499
               
               
               Cow position:chr29:24187865-24188044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:334-484
               
               
               Cow position:chr29:706779-706920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:334-484
               
               
               Cow position:chr29:17110149-17109993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):26, 76

               
               
               Conread position:334-493
               
               
               Cow position:chr29:21542053-21542211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):91, 66

               
               
               Conread position:334-493
               
               
               Cow position:chr29:42792311-42792153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:334-495
               
               
               Cow position:chr29:28979320-28979477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):26, 61

               
               
               Conread position:334-499
               
               
               Cow position:chr29:19187222-19187047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:336-490
               
               
               Cow position:chr29:29645130-29645292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:336-492
               
               
               Cow position:chr29:40583979-40583814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):27, 47

               
               
               Conread position:338-484
               
               
               Cow position:chr29:13091284-13091431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):24, 140

               
               
               Conread position:339-499
               
               
               Cow position:chr29:40916989-40916828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):49, 137

               
               
               Conread position:340-499
               
               
               Cow position:chr29:21443151-21443317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:345-484
               
               
               Cow position:chr29:13639184-13639330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):19, 43

               
               
               Conread position:360-473
               
               
               Cow position:chr29:7143460-7143342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:360-484
               
               
               Cow position:chr29:28257303-28257177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:360-495
               
               
               Cow position:chr29:29057337-29057200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):33, 52

               
               
               Conread position:360-499
               
               
               Cow position:chr29:5520323-5520464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr29:15947330-15947188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr29:23142171-23142314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr29:34359665-34359800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):66, 37

               
               
               Conread position:360-499
               
               
               Cow position:chr29:35677380-35677522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:379-493
               
               
               Cow position:chr29:17051866-17051981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:91
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:379-494
               
               
               Cow position:chr29:30455946-30455831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):47, 9

               
               
               Conread position:199-471
               
               
               Cow position:chr3:58497977-58497684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):13, 45

               
               
               Conread position:269-499
               
               
               Cow position:chr3:11229130-11229366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):8, 147

               
               
               Conread position:278-499
               
               
               Cow position:chr3:25037775-25037993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:280-504
               
               
               Cow position:chr3:9662942-9663178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):8, 26

               
               
               Conread position:284-494
               
               
               Cow position:chr3:49363329-49363113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:286-484
               
               
               Cow position:chr3:23804727-23804519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):28, 134

               
               
               Conread position:286-493
               
               
               Cow position:chr3:83325432-83325217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:291-499
               
               
               Cow position:chr3:27976316-27976525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):32, 13

               
               
               Conread position:295-479
               
               
               Cow position:chr3:58527587-58527401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):69, 32

               
               
               Conread position:296-499
               
               
               Cow position:chr3:3163908-3164111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):110, 18

               
               
               Conread position:296-499
               
               
               Cow position:chr3:81616236-81616454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:296-500
               
               
               Cow position:chr3:39873499-39873697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):120, 18

               
               
               Conread position:299-484
               
               
               Cow position:chr3:65058907-65058712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):54, 122

               
               
               Conread position:299-495
               
               
               Cow position:chr3:81087441-81087637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):104, 28

               
               
               Conread position:299-498
               
               
               Cow position:chr3:84807129-84807329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):33, 11

               
               
               Conread position:300-493
               
               
               Cow position:chr3:66120910-66120713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:301-484
               
               
               Cow position:chr3:24774848-24774667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):63, 106

               
               
               Conread position:304-490
               
               
               Cow position:chr3:36159998-36160185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):69, 9

               
               
               Conread position:305-487
               
               
               Cow position:chr3:36411886-36412077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:306-484
               
               
               Cow position:chr3:2506285-2506464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):44, 36

               
               
               Conread position:306-484
               
               
               Cow position:chr3:40212836-40213020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):58, 21

               
               
               Conread position:306-493
               
               
               Cow position:chr3:2635825-2635635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:306-499
               
               
               Cow position:chr3:26982249-26982057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:308-501
               
               
               Cow position:chr3:31352684-31352878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):21, 81

               
               
               Conread position:310-484
               
               
               Cow position:chr3:20158272-20158082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:310-484
               
               
               Cow position:chr3:30941002-30940821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):54, 170

               
               
               Conread position:310-498
               
               
               Cow position:chr3:51150326-51150127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):53, 24

               
               
               Conread position:310-499
               
               
               Cow position:chr3:65237220-65237023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):51, 102

               
               
               Conread position:312-483
               
               
               Cow position:chr3:40343845-40344015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):110, 14

               
               
               Conread position:312-484
               
               
               Cow position:chr3:59597361-59597192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):18, 51

               
               
               Conread position:312-495
               
               
               Cow position:chr3:4517989-4518180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):52, 100

               
               
               Conread position:312-499
               
               
               Cow position:chr3:83215463-83215261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):52, 24

               
               
               Conread position:313-475
               
               
               Cow position:chr3:50328213-50328390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:313-483
               
               
               Cow position:chr3:14599114-14598951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):146, 83

               
               
               Conread position:313-484
               
               
               Cow position:chr3:4549210-4549041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):51, 17

               
               
               Conread position:313-499
               
               
               Cow position:chr3:53904630-53904456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):16, 82

               
               
               Conread position:313-503
               
               
               Cow position:chr3:53910300-53910103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:314-466
               
               
               Cow position:chr3:77478714-77478560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:314-483
               
               
               Cow position:chr3:19611160-19611337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):50, 98

               
               
               Conread position:314-484
               
               
               Cow position:chr3:22165222-22165402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):9, 23

               
               
               Conread position:314-499
               
               
               Cow position:chr3:3656708-3656513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:314-499
               
               
               Cow position:chr3:19793091-19792904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):24, 81

               
               
               Conread position:314-499
               
               
               Cow position:chr3:55318706-55318898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):47, 22

               
               
               Conread position:314-504
               
               
               Cow position:chr3:69650704-69650895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:156
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):24, 80

               
               
               Conread position:315-486
               
               
               Cow position:chr3:17039801-17039624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):39, 19

               
               
               Conread position:315-493
               
               
               Cow position:chr3:14601520-14601699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:315-499
               
               
               Cow position:chr3:76056096-76056286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):49, 95

               
               
               Conread position:316-483
               
               
               Cow position:chr3:19641246-19641072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):17, 35

               
               
               Conread position:316-499
               
               
               Cow position:chr3:15443547-15443730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):91, 16

               
               
               Conread position:316-511
               
               
               Cow position:chr3:24596240-24596435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):9, 82

               
               
               Conread position:317-483
               
               
               Cow position:chr3:3453772-3453594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:317-484
               
               
               Cow position:chr3:19788650-19788816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):38, 45

               
               
               Conread position:317-495
               
               
               Cow position:chr3:57764401-57764221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):47, 18

               
               
               Conread position:317-499
               
               
               Cow position:chr3:76267793-76267976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):19, 35

               
               
               Conread position:318-493
               
               
               Cow position:chr3:5045972-5046154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:318-493
               
               
               Cow position:chr3:31896775-31896952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:318-498
               
               
               Cow position:chr3:18687092-18686906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):19, 93

               
               
               Conread position:318-499
               
               
               Cow position:chr3:9025901-9026087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):24, 153

               
               
               Conread position:318-499
               
               
               Cow position:chr3:14465527-14465707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):45, 14

               
               
               Conread position:318-499
               
               
               Cow position:chr3:23471273-23471460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):20, 95

               
               
               Conread position:318-500
               
               
               Cow position:chr3:72027828-72027635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):46, 166

               
               
               Conread position:318-513
               
               
               Cow position:chr3:29813415-29813215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):46, 78

               
               
               Conread position:319-473
               
               
               Cow position:chr3:41233156-41233302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):17, 70

               
               
               Conread position:319-477
               
               
               Cow position:chr3:23168880-23169045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:319-496
               
               
               Cow position:chr3:64909907-64910094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:319-497
               
               
               Cow position:chr3:31309167-31309353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):44, 15

               
               
               Conread position:319-498
               
               
               Cow position:chr3:48900143-48900333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):42, 15

               
               
               Conread position:319-499
               
               
               Cow position:chr3:2016619-2016434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):42, 24

               
               
               Conread position:319-499
               
               
               Cow position:chr3:56948908-56949089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):44, 81

               
               
               Conread position:319-499
               
               
               Cow position:chr3:64280750-64280931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):42, 90

               
               
               Conread position:319-504
               
               
               Cow position:chr3:51577937-51578132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):45, 156

               
               
               Conread position:320-499
               
               
               Cow position:chr3:47284986-47284812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:320-499
               
               
               Cow position:chr3:80958322-80958512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):44, 164

               
               
               Conread position:320-502
               
               
               Cow position:chr3:21642172-21641983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):77, 13

               
               
               Conread position:320-502
               
               
               Cow position:chr3:52651903-52652082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):10, 31

               
               
               Conread position:320-516
               
               
               Cow position:chr3:76300961-76300752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:321-484
               
               
               Cow position:chr3:44594799-44594635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):67, 29

               
               
               Conread position:321-489
               
               
               Cow position:chr3:22221511-22221336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):43, 13

               
               
               Conread position:321-490
               
               
               Cow position:chr3:5305990-5305806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:321-495
               
               
               Cow position:chr3:71423384-71423552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):105, 9

               
               
               Conread position:321-498
               
               
               Cow position:chr3:58010651-58010829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):38, 9

               
               
               Conread position:321-499
               
               
               Cow position:chr3:14553048-14552874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):12, 30

               
               
               Conread position:321-499
               
               
               Cow position:chr3:49482531-49482717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 9

               
               
               Conread position:321-500
               
               
               Cow position:chr3:18059887-18059701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):38, 9

               
               
               Conread position:321-503
               
               
               Cow position:chr3:23037323-23037514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):43, 13

               
               
               Conread position:322-480
               
               
               Cow position:chr3:23151496-23151666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:322-487
               
               
               Cow position:chr3:7381649-7381822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):42, 10

               
               
               Conread position:322-495
               
               
               Cow position:chr3:39812243-39812050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):41, 12

               
               
               Conread position:322-499
               
               
               Cow position:chr3:47198944-47199128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 8

               
               
               Conread position:322-499
               
               
               Cow position:chr3:61023846-61024024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):84, 28

               
               
               Conread position:323-499
               
               
               Cow position:chr3:35583017-35582839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):6, 39

               
               
               Conread position:323-500
               
               
               Cow position:chr3:59474304-59474121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 74

               
               
               Conread position:324-483
               
               
               Cow position:chr3:45882082-45881913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:324-499
               
               
               Cow position:chr3:18699926-18700112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):40, 12

               
               
               Conread position:325-499
               
               
               Cow position:chr3:28896839-28897023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):36, 96

               
               
               Conread position:326-484
               
               
               Cow position:chr3:20911230-20911396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:327-480
               
               
               Cow position:chr3:8526199-8526347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):37, 81

               
               
               Conread position:327-498
               
               
               Cow position:chr3:75966602-75966784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):37, 89

               
               
               Conread position:329-494
               
               
               Cow position:chr3:80023137-80023310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):35, 51

               
               
               Conread position:331-479
               
               
               Cow position:chr3:621617-621453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:331-499
               
               
               Cow position:chr3:73395291-73395115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:332-428
               
               
               Cow position:chr3:5646015-5646112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:82
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:332-499
               
               
               Cow position:chr3:58432280-58432446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):29, 61

               
               
               Conread position:333-484
               
               
               Cow position:chr3:10958070-10958226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):29, 69

               
               
               Conread position:333-499
               
               
               Cow position:chr3:77271113-77271278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):90, 78

               
               
               Conread position:334-468
               
               
               Cow position:chr3:27146065-27145928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):67, 124

               
               
               Conread position:334-477
               
               
               Cow position:chr3:22078251-22078096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:334-483
               
               
               Cow position:chr3:37041589-37041434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:334-484
               
               
               Cow position:chr3:66639934-66639784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:334-493
               
               
               Cow position:chr3:9718004-9717853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:334-493
               
               
               Cow position:chr3:19435281-19435121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:334-498
               
               
               Cow position:chr3:70402811-70402644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):30, 72

               
               
               Conread position:334-499
               
               
               Cow position:chr3:23203067-23203232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):73, 16

               
               
               Conread position:335-500
               
               
               Cow position:chr3:29234506-29234683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:336-496
               
               
               Cow position:chr3:8061291-8061128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 76

               
               
               Conread position:336-497
               
               
               Cow position:chr3:52457080-52456917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):28, 109

               
               
               Conread position:337-475
               
               
               Cow position:chr3:27108717-27108866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:337-494
               
               
               Cow position:chr3:7662027-7661856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:337-499
               
               
               Cow position:chr3:80565121-80564965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):90, 6

               
               
               Conread position:338-499
               
               
               Cow position:chr3:15751554-15751714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:338-503
               
               
               Cow position:chr3:3292625-3292460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):88, 104

               
               
               Conread position:343-476
               
               
               Cow position:chr3:61323489-61323353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:359-484
               
               
               Cow position:chr3:38783747-38783620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:360-476
               
               
               Cow position:chr3:65413136-65413256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:360-494
               
               
               Cow position:chr3:74787564-74787429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):52, 26

               
               
               Conread position:360-496
               
               
               Cow position:chr3:82366267-82366126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr3:7566283-7566418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):70, 37

               
               
               Conread position:360-499
               
               
               Cow position:chr3:15153826-15153690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):66, 42

               
               
               Conread position:360-499
               
               
               Cow position:chr3:35624405-35624546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr3:70334554-70334696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr3:70756501-70756643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr3:83199651-83199510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):28, 57

               
               
               Conread position:360-501
               
               
               Cow position:chr3:53046520-53046666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:360-503
               
               
               Cow position:chr3:68624357-68624212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:364-499
               
               
               Cow position:chr3:73709181-73709046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:372-502
               
               
               Cow position:chr3:14211860-14211987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):54, 29

               
               
               Conread position:382-493
               
               
               Cow position:chr3:44243637-44243525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:382-499
               
               
               Cow position:chr3:56704204-56704322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:389-498
               
               
               Cow position:chr3:12711805-12711916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:91
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:389-499
               
               
               Cow position:chr3:84175714-84175824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):39, 27

               
               
               Conread position:390-484
               
               
               Cow position:chr3:59621539-59621634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:81
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:397-499
               
               
               Cow position:chr3:57624566-57624463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:85
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:1-265
               
               
               Cow position:chr4:45653762-45654038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):40, 49

               
               
               Conread position:217-484
               
               
               Cow position:chr4:17789989-17790261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):106, 193

               
               
               Conread position:245-499
               
               
               Cow position:chr4:348150-348409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):19, 11

               
               
               Conread position:278-495
               
               
               Cow position:chr4:43910017-43909781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:278-497
               
               
               Cow position:chr4:479556-479774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):19, 8

               
               
               Conread position:279-493
               
               
               Cow position:chr4:17782708-17782928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):16, 5

               
               
               Conread position:279-494
               
               
               Cow position:chr4:4320755-4320971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):85, 20

               
               
               Conread position:279-499
               
               
               Cow position:chr4:30691246-30691020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):45, 52

               
               
               Conread position:282-503
               
               
               Cow position:chr4:46656376-46656141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:286-493
               
               
               Cow position:chr4:10411002-10410798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):12, 112

               
               
               Conread position:290-484
               
               
               Cow position:chr4:38946438-38946246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):117, 16

               
               
               Conread position:290-500
               
               
               Cow position:chr4:32694011-32693803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):71, 5

               
               
               Conread position:292-484
               
               
               Cow position:chr4:44772821-44773012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):115, 20

               
               
               Conread position:295-496
               
               
               Cow position:chr4:44927314-44927522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):21, 145

               
               
               Conread position:296-490
               
               
               Cow position:chr4:12720342-12720151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):33, 12

               
               
               Conread position:297-499
               
               
               Cow position:chr4:508682-508893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):31, 122

               
               
               Conread position:299-490
               
               
               Cow position:chr4:25422257-25422065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):28, 157

               
               
               Conread position:299-499
               
               
               Cow position:chr4:61608745-61608949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):23, 44

               
               
               Conread position:301-523
               
               
               Cow position:chr4:7326712-7326933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):51, 7

               
               
               Conread position:303-484
               
               
               Cow position:chr4:43579193-43579382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):31, 52

               
               
               Conread position:303-499
               
               
               Cow position:chr4:9925421-9925613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):58, 29

               
               
               Conread position:305-490
               
               
               Cow position:chr4:40393029-40392840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):56, 102

               
               
               Conread position:306-492
               
               
               Cow position:chr4:34562585-34562404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):133, 51

               
               
               Conread position:308-497
               
               
               Cow position:chr4:56239650-56239842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):55, 28

               
               
               Conread position:308-499
               
               
               Cow position:chr4:46761826-46761623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:309-499
               
               
               Cow position:chr4:19199070-19199271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):55, 27

               
               
               Conread position:309-512
               
               
               Cow position:chr4:63770040-63769836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):31, 5

               
               
               Conread position:310-484
               
               
               Cow position:chr4:66412386-66412217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):35, 41

               
               
               Conread position:310-499
               
               
               Cow position:chr4:22101050-22101249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:311-499
               
               
               Cow position:chr4:47038981-47038783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):19, 26

               
               
               Conread position:312-469
               
               
               Cow position:chr4:8871624-8871460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:312-499
               
               
               Cow position:chr4:45685666-45685473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):14, 78

               
               
               Conread position:312-499
               
               
               Cow position:chr4:56410556-56410361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):48, 94

               
               
               Conread position:313-496
               
               
               Cow position:chr4:13140900-13141078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):24, 83

               
               
               Conread position:313-499
               
               
               Cow position:chr4:47230786-47230982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:314-486
               
               
               Cow position:chr4:45840602-45840427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:314-499
               
               
               Cow position:chr4:5790855-5790658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:314-499
               
               
               Cow position:chr4:25802900-25802706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:314-499
               
               
               Cow position:chr4:61268387-61268207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):109, 60

               
               
               Conread position:314-557
               
               
               Cow position:chr4:8083600-8083839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):112, 20

               
               
               Conread position:315-483
               
               
               Cow position:chr4:34383136-34383310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):37, 12

               
               
               Conread position:315-484
               
               
               Cow position:chr4:23271492-23271313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:315-490
               
               
               Cow position:chr4:17851053-17851228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):48, 28

               
               
               Conread position:316-484
               
               
               Cow position:chr4:60363559-60363381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):8, 28

               
               
               Conread position:317-495
               
               
               Cow position:chr4:16070478-16070656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):14, 49

               
               
               Conread position:317-495
               
               
               Cow position:chr4:19238424-19238235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:317-498
               
               
               Cow position:chr4:41099139-41098952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):47, 17

               
               
               Conread position:317-502
               
               
               Cow position:chr4:22482526-22482338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:318-470
               
               
               Cow position:chr4:20142706-20142866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):70, 152

               
               
               Conread position:318-482
               
               
               Cow position:chr4:27657177-27657008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):55, 70

               
               
               Conread position:318-482
               
               
               Cow position:chr4:59001933-59002107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:318-483
               
               
               Cow position:chr4:16636872-16637043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):55, 16

               
               
               Conread position:318-483
               
               
               Cow position:chr4:19200311-19200144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):46, 88

               
               
               Conread position:318-483
               
               
               Cow position:chr4:23846847-23847019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):17, 90

               
               
               Conread position:318-484
               
               
               Cow position:chr4:23600359-23600198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):108, 46

               
               
               Conread position:318-484
               
               
               Cow position:chr4:52823195-52823371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):19, 98

               
               
               Conread position:318-488
               
               
               Cow position:chr4:59557643-59557466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):33, 18

               
               
               Conread position:318-499
               
               
               Cow position:chr4:47283806-47283997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:318-506
               
               
               Cow position:chr4:10968193-10968380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):46, 16

               
               
               Conread position:319-495
               
               
               Cow position:chr4:56591250-56591058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):18, 180

               
               
               Conread position:319-499
               
               
               Cow position:chr4:28836735-28836552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 130

               
               
               Conread position:319-499
               
               
               Cow position:chr4:41900167-41899987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):44, 24

               
               
               Conread position:319-499
               
               
               Cow position:chr4:45626434-45626611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):20, 81

               
               
               Conread position:319-502
               
               
               Cow position:chr4:45662312-45662495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):89, 136

               
               
               Conread position:319-566
               
               
               Cow position:chr4:49808712-49808455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):71, 31

               
               
               Conread position:320-499
               
               
               Cow position:chr4:48227492-48227672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):45, 12

               
               
               Conread position:320-503
               
               
               Cow position:chr4:561834-561644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):42, 96

               
               
               Conread position:320-503
               
               
               Cow position:chr4:28660345-28660539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):44, 12

               
               
               Conread position:320-504
               
               
               Cow position:chr4:60527383-60527191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:321-495
               
               
               Cow position:chr4:45706239-45706059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:321-497
               
               
               Cow position:chr4:22344826-22345004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):102, 56

               
               
               Conread position:321-498
               
               
               Cow position:chr4:42231831-42232007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):52, 56

               
               
               Conread position:321-499
               
               
               Cow position:chr4:12591018-12591198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):51, 21

               
               
               Conread position:322-495
               
               
               Cow position:chr4:21112380-21112552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 82

               
               
               Conread position:322-561
               
               
               Cow position:chr4:57590477-57590730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:323-483
               
               
               Cow position:chr4:20147385-20147215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:323-484
               
               
               Cow position:chr4:39010251-39010080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 9

               
               
               Conread position:323-498
               
               
               Cow position:chr4:32458657-32458844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):39, 13

               
               
               Conread position:323-502
               
               
               Cow position:chr4:12867301-12867117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):18, 84

               
               
               Conread position:324-495
               
               
               Cow position:chr4:55694369-55694194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):40, 52

               
               
               Conread position:325-492
               
               
               Cow position:chr4:19420558-19420734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):36, 9

               
               
               Conread position:325-496
               
               
               Cow position:chr4:53126295-53126130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):98, 78

               
               
               Conread position:326-499
               
               
               Cow position:chr4:54543463-54543648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:327-484
               
               
               Cow position:chr4:51617799-51617968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:327-484
               
               
               Cow position:chr4:51769301-51769134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:327-499
               
               
               Cow position:chr4:45636368-45636182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:328-499
               
               
               Cow position:chr4:61188681-61188853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):66, 24

               
               
               Conread position:329-484
               
               
               Cow position:chr4:2628725-2628559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:332-478
               
               
               Cow position:chr4:30250092-30250234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):32, 52

               
               
               Conread position:332-499
               
               
               Cow position:chr4:16881182-16881343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):31, 74

               
               
               Conread position:334-476
               
               
               Cow position:chr4:61258165-61258018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:334-483
               
               
               Cow position:chr4:19578572-19578417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):29, 67

               
               
               Conread position:334-484
               
               
               Cow position:chr4:61969541-61969695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:334-493
               
               
               Cow position:chr4:22127825-22127985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:334-497
               
               
               Cow position:chr4:10016446-10016610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):75, 57

               
               
               Conread position:334-499
               
               
               Cow position:chr4:12127450-12127623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):23, 77

               
               
               Conread position:334-499
               
               
               Cow position:chr4:45250162-45249986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:335-494
               
               
               Cow position:chr4:13326774-13326935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):58, 8

               
               
               Conread position:335-499
               
               
               Cow position:chr4:29247012-29247185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:335-502
               
               
               Cow position:chr4:46446999-46447169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:336-477
               
               
               Cow position:chr4:25973896-25974036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):90, 65

               
               
               Conread position:336-484
               
               
               Cow position:chr4:22331307-22331155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):28, 65

               
               
               Conread position:336-495
               
               
               Cow position:chr4:45582935-45583103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:336-495
               
               
               Cow position:chr4:56805350-56805196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):90, 65

               
               
               Conread position:336-496
               
               
               Cow position:chr4:46494488-46494320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:336-497
               
               
               Cow position:chr4:61286724-61286562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):26, 73

               
               
               Conread position:336-499
               
               
               Cow position:chr4:19102689-19102866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:337-478
               
               
               Cow position:chr4:27425889-27425748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):10, 67

               
               
               Conread position:338-484
               
               
               Cow position:chr4:38999601-38999454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):71, 59

               
               
               Conread position:338-499
               
               
               Cow position:chr4:20912249-20912096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:344-495
               
               
               Cow position:chr4:45074229-45074079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):82, 44

               
               
               Conread position:359-503
               
               
               Cow position:chr4:22050957-22051104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:360-480
               
               
               Cow position:chr4:45801672-45801550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:95
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:360-484
               
               
               Cow position:chr4:27511702-27511575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr4:7698419-7698282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):64, 30

               
               
               Conread position:360-499
               
               
               Cow position:chr4:45775176-45775322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr4:53819530-53819670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:362-494
               
               
               Cow position:chr4:58248555-58248421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:371-495
               
               
               Cow position:chr4:46455922-46456049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:382-499
               
               
               Cow position:chr4:33870208-33870090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:383-498
               
               
               Cow position:chr4:59378042-59377926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:385-499
               
               
               Cow position:chr4:1236743-1236857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:389-500
               
               
               Cow position:chr4:44782501-44782389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:389-503
               
               
               Cow position:chr4:19098599-19098484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:93
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:392-499
               
               
               Cow position:chr4:21532972-21533080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:259-499
               
               
               Cow position:chr5:49821727-49821477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):33, 5

               
               
               Conread position:276-493
               
               
               Cow position:chr5:32731138-32731355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):150, 99

               
               
               Conread position:281-487
               
               
               Cow position:chr5:55068970-55068767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):83, 5

               
               
               Conread position:285-490
               
               
               Cow position:chr5:12874760-12874965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):137, 194

               
               
               Conread position:286-486
               
               
               Cow position:chr5:63832192-63831990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 24

               
               
               Conread position:286-491
               
               
               Cow position:chr5:57074062-57074273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):36, 128

               
               
               Conread position:286-493
               
               
               Cow position:chr5:27550688-27550897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:286-499
               
               
               Cow position:chr5:61049605-61049381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):75, 50

               
               
               Conread position:286-499
               
               
               Cow position:chr5:65140568-65140345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):75, 18

               
               
               Conread position:287-495
               
               
               Cow position:chr5:3677991-3677772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):20, 75

               
               
               Conread position:291-484
               
               
               Cow position:chr5:35208528-35208325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):19, 8

               
               
               Conread position:294-482
               
               
               Cow position:chr5:15770200-15770390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):103, 33

               
               
               Conread position:297-479
               
               
               Cow position:chr5:24108796-24108991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:298-499
               
               
               Cow position:chr5:56434133-56433930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):35, 50

               
               
               Conread position:300-480
               
               
               Cow position:chr5:53779403-53779223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):23, 14

               
               
               Conread position:305-499
               
               
               Cow position:chr5:36839199-36839009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:306-499
               
               
               Cow position:chr5:11426983-11427184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):18, 32

               
               
               Conread position:308-504
               
               
               Cow position:chr5:46022806-46023019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:309-499
               
               
               Cow position:chr5:22102799-22102607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):55, 23

               
               
               Conread position:310-493
               
               
               Cow position:chr5:49183393-49183205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:310-496
               
               
               Cow position:chr5:21003545-21003365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):113, 25

               
               
               Conread position:312-484
               
               
               Cow position:chr5:51053398-51053585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:312-485
               
               
               Cow position:chr5:32976009-32975821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:312-494
               
               
               Cow position:chr5:6245419-6245610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):52, 93

               
               
               Conread position:312-494
               
               
               Cow position:chr5:52853214-52853025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):21, 98

               
               
               Conread position:312-499
               
               
               Cow position:chr5:4280691-4280497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):24, 99

               
               
               Conread position:312-500
               
               
               Cow position:chr5:64843720-64843922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):52, 28

               
               
               Conread position:313-499
               
               
               Cow position:chr5:59627337-59627149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:314-486
               
               
               Cow position:chr5:26548900-26549078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):46, 20

               
               
               Conread position:314-489
               
               
               Cow position:chr5:55942144-55942320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):34, 45

               
               
               Conread position:314-495
               
               
               Cow position:chr5:12557043-12557234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:314-496
               
               
               Cow position:chr5:65679737-65679921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:314-499
               
               
               Cow position:chr5:5856095-5855907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):8, 38

               
               
               Conread position:314-499
               
               
               Cow position:chr5:58519171-58519367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:314-499
               
               
               Cow position:chr5:69338057-69337869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):61, 18

               
               
               Conread position:315-493
               
               
               Cow position:chr5:34204060-34203882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):22, 43

               
               
               Conread position:316-484
               
               
               Cow position:chr5:26147830-26147655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):44, 29

               
               
               Conread position:316-484
               
               
               Cow position:chr5:73167771-73167947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):24, 97

               
               
               Conread position:316-490
               
               
               Cow position:chr5:66972670-66972487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):48, 16

               
               
               Conread position:317-499
               
               
               Cow position:chr5:11667943-11668136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:317-499
               
               
               Cow position:chr5:17566202-17566390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:317-499
               
               
               Cow position:chr5:46681482-46681670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:318-470
               
               
               Cow position:chr5:41628436-41628587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):11, 83

               
               
               Conread position:318-479
               
               
               Cow position:chr5:12504550-12504721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:318-484
               
               
               Cow position:chr5:36038763-36038938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):13, 88

               
               
               Conread position:318-484
               
               
               Cow position:chr5:65941020-65941186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):13, 44

               
               
               Conread position:318-493
               
               
               Cow position:chr5:56463285-56463115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):11, 59

               
               
               Conread position:318-498
               
               
               Cow position:chr5:44796496-44796684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):46, 97

               
               
               Conread position:319-482
               
               
               Cow position:chr5:43858179-43858354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:319-493
               
               
               Cow position:chr5:29010487-29010311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:319-499
               
               
               Cow position:chr5:2355757-2355569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:319-499
               
               
               Cow position:chr5:24915286-24915478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:319-502
               
               
               Cow position:chr5:49358448-49358632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):10, 116

               
               
               Conread position:319-503
               
               
               Cow position:chr5:14168075-14167887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):26, 34

               
               
               Conread position:320-483
               
               
               Cow position:chr5:40122370-40122545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:320-483
               
               
               Cow position:chr5:45436267-45436431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):40, 16

               
               
               Conread position:320-496
               
               
               Cow position:chr5:33273933-33273745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):44, 17

               
               
               Conread position:321-468
               
               
               Cow position:chr5:28660468-28660310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:321-479
               
               
               Cow position:chr5:56643304-56643136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):43, 15

               
               
               Conread position:321-492
               
               
               Cow position:chr5:55177117-55176942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):40, 89

               
               
               Conread position:321-499
               
               
               Cow position:chr5:35969777-35969581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:321-499
               
               
               Cow position:chr5:52001390-52001574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):42, 9

               
               
               Conread position:321-500
               
               
               Cow position:chr5:50101144-50101327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):38, 11

               
               
               Conread position:321-525
               
               
               Cow position:chr5:19052557-19052769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):44, 17

               
               
               Conread position:322-484
               
               
               Cow position:chr5:25035018-25035194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:322-484
               
               
               Cow position:chr5:43839764-43839935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 8

               
               
               Conread position:322-486
               
               
               Cow position:chr5:20288023-20288201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):42, 8

               
               
               Conread position:322-495
               
               
               Cow position:chr5:19752537-19752356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):42, 77

               
               
               Conread position:324-484
               
               
               Cow position:chr5:35685168-35684999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:324-504
               
               
               Cow position:chr5:69383485-69383299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):47, 88

               
               
               Conread position:326-483
               
               
               Cow position:chr5:46479014-46479177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):7, 83

               
               
               Conread position:327-495
               
               
               Cow position:chr5:5016654-5016478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):20, 85

               
               
               Conread position:334-473
               
               
               Cow position:chr5:29507374-29507514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:334-484
               
               
               Cow position:chr5:34288030-34288189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):37, 75

               
               
               Conread position:334-493
               
               
               Cow position:chr5:59511257-59511417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:334-494
               
               
               Cow position:chr5:69765810-69765978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):30, 156

               
               
               Conread position:334-498
               
               
               Cow position:chr5:742952-742780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:334-499
               
               
               Cow position:chr5:71495037-71494870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:334-503
               
               
               Cow position:chr5:36722281-36722452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:335-476
               
               
               Cow position:chr5:60963120-60962978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:335-495
               
               
               Cow position:chr5:36823092-36822936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):91, 36

               
               
               Conread position:336-478
               
               
               Cow position:chr5:695076-694931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):73, 36

               
               
               Conread position:336-484
               
               
               Cow position:chr5:60523949-60523796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):28, 70

               
               
               Conread position:336-493
               
               
               Cow position:chr5:9352723-9352565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:336-500
               
               
               Cow position:chr5:44163151-44163320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:336-503
               
               
               Cow position:chr5:30805371-30805208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):87, 60

               
               
               Conread position:338-482
               
               
               Cow position:chr5:21721255-21721405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):25, 64

               
               
               Conread position:338-499
               
               
               Cow position:chr5:62011902-62011732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:338-499
               
               
               Cow position:chr5:67932246-67932423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:359-499
               
               
               Cow position:chr5:20779209-20779349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):69, 51

               
               
               Conread position:359-499
               
               
               Cow position:chr5:54750998-54750856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:360-483
               
               
               Cow position:chr5:65745579-65745700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):63, 36

               
               
               Conread position:360-496
               
               
               Cow position:chr5:26790142-26790272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr5:16668882-16668746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):66, 42

               
               
               Conread position:360-499
               
               
               Cow position:chr5:35246919-35247061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):47, 79

               
               
               Conread position:360-499
               
               
               Cow position:chr5:36868926-36868786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):40, 100

               
               
               Conread position:360-499
               
               
               Cow position:chr5:39937306-39937164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr5:53980563-53980705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr5:62572720-62572581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):34, 119

               
               
               Conread position:360-502
               
               
               Cow position:chr5:38079564-38079416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:360-504
               
               
               Cow position:chr5:44734538-44734681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):67, 47

               
               
               Conread position:361-499
               
               
               Cow position:chr5:54312789-54312650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:371-503
               
               
               Cow position:chr5:29979786-29979913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:374-490
               
               
               Cow position:chr5:17602030-17602147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:94
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:379-493
               
               
               Cow position:chr5:27650891-27651006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:91
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:388-499
               
               
               Cow position:chr5:61875698-61875586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:389-484
               
               
               Cow position:chr5:43992484-43992388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:83
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:389-484
               
               
               Cow position:chr5:54154043-54154138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:84
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):37, 90

               
               
               Conread position:245-503
               
               
               Cow position:chr6:24491342-24491091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:274-499
               
               
               Cow position:chr6:43345141-43345379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:277-483
               
               
               Cow position:chr6:6067421-6067623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):7, 38

               
               
               Conread position:278-499
               
               
               Cow position:chr6:67282172-67281957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):145, 6

               
               
               Conread position:293-502
               
               
               Cow position:chr6:40032455-40032250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):29, 38

               
               
               Conread position:296-484
               
               
               Cow position:chr6:15974265-15974446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):131, 18

               
               
               Conread position:296-495
               
               
               Cow position:chr6:21466999-21467201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):5, 65

               
               
               Conread position:296-499
               
               
               Cow position:chr6:23401723-23401929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):65, 16

               
               
               Conread position:301-490
               
               
               Cow position:chr6:154744-154542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):24, 198

               
               
               Conread position:301-493
               
               
               Cow position:chr6:16091166-16090972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):72, 26

               
               
               Conread position:301-499
               
               
               Cow position:chr6:16380809-16380607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):41, 9

               
               
               Conread position:307-492
               
               
               Cow position:chr6:59101057-59101252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):52, 25

               
               
               Conread position:312-470
               
               
               Cow position:chr6:58371004-58370842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):45, 20

               
               
               Conread position:312-484
               
               
               Cow position:chr6:14150122-14150302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:312-493
               
               
               Cow position:chr6:67963801-67963987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:312-499
               
               
               Cow position:chr6:26408242-26408442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:312-501
               
               
               Cow position:chr6:17997057-17997258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):26, 186

               
               
               Conread position:313-499
               
               
               Cow position:chr6:6060318-6060509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):50, 19

               
               
               Conread position:313-499
               
               
               Cow position:chr6:16137509-16137709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:313-499
               
               
               Cow position:chr6:55044381-55044579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):20, 133

               
               
               Conread position:314-496
               
               
               Cow position:chr6:36570713-36570526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):19, 37

               
               
               Conread position:314-499
               
               
               Cow position:chr6:58304670-58304477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):22, 109

               
               
               Conread position:315-463
               
               
               Cow position:chr6:30688264-30688413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:315-499
               
               
               Cow position:chr6:21535296-21535102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:315-502
               
               
               Cow position:chr6:55450180-55449993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:316-483
               
               
               Cow position:chr6:61523961-61524126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):46, 14

               
               
               Conread position:316-499
               
               
               Cow position:chr6:37395160-37395338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):110, 16

               
               
               Conread position:317-494
               
               
               Cow position:chr6:48436086-48435897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:317-496
               
               
               Cow position:chr6:2624012-2623839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):107, 83

               
               
               Conread position:317-499
               
               
               Cow position:chr6:58697373-58697569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:317-499
               
               
               Cow position:chr6:59297298-59297115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):44, 19

               
               
               Conread position:318-476
               
               
               Cow position:chr6:12648386-12648544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):104, 12

               
               
               Conread position:318-478
               
               
               Cow position:chr6:7801146-7801313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:318-478
               
               
               Cow position:chr6:35341934-35342096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):46, 90

               
               
               Conread position:318-483
               
               
               Cow position:chr6:51529937-51530109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:318-484
               
               
               Cow position:chr6:23696247-23696078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):46, 82

               
               
               Conread position:318-490
               
               
               Cow position:chr6:38645982-38645812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):11, 83

               
               
               Conread position:318-493
               
               
               Cow position:chr6:37129692-37129866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):11, 42

               
               
               Conread position:318-494
               
               
               Cow position:chr6:15300587-15300766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):43, 75

               
               
               Conread position:318-499
               
               
               Cow position:chr6:4469019-4468831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):46, 126

               
               
               Conread position:318-499
               
               
               Cow position:chr6:47246035-47245843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 172

               
               
               Conread position:318-499
               
               
               Cow position:chr6:62437670-62437477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:318-503
               
               
               Cow position:chr6:5330666-5330471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):43, 15

               
               
               Conread position:318-516
               
               
               Cow position:chr6:38640486-38640278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 203

               
               
               Conread position:319-499
               
               
               Cow position:chr6:15446942-15447135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):42, 10

               
               
               Conread position:320-479
               
               
               Cow position:chr6:5095294-5095459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):42, 18

               
               
               Conread position:320-482
               
               
               Cow position:chr6:44194305-44194470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:320-484
               
               
               Cow position:chr6:50504707-50504534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):42, 80

               
               
               Conread position:320-499
               
               
               Cow position:chr6:8468907-8468728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):44, 18

               
               
               Conread position:321-483
               
               
               Cow position:chr6:18447267-18447439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):43, 11

               
               
               Conread position:322-504
               
               
               Cow position:chr6:15058613-15058434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):104, 28

               
               
               Conread position:322-504
               
               
               Cow position:chr6:34569664-34569465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 8

               
               
               Conread position:323-499
               
               
               Cow position:chr6:1103498-1103676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):38, 11

               
               
               Conread position:324-498
               
               
               Cow position:chr6:49686067-49685881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:324-503
               
               
               Cow position:chr6:18440231-18440419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:325-496
               
               
               Cow position:chr6:65259264-65259427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):156, 50

               
               
               Conread position:327-499
               
               
               Cow position:chr6:1475581-1475408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):84, 39

               
               
               Conread position:327-499
               
               
               Cow position:chr6:18144445-18144260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:327-509
               
               
               Cow position:chr6:53811830-53811633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:330-499
               
               
               Cow position:chr6:15243080-15242899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:334-448
               
               
               Cow position:chr6:19324711-19324829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:334-470
               
               
               Cow position:chr6:40761485-40761336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:334-476
               
               
               Cow position:chr6:57545992-57546143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:334-478
               
               
               Cow position:chr6:3937024-3936866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:334-482
               
               
               Cow position:chr6:14436507-14436646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):89, 59

               
               
               Conread position:334-493
               
               
               Cow position:chr6:19455487-19455326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:334-495
               
               
               Cow position:chr6:36891883-36891718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:334-501
               
               
               Cow position:chr6:6850552-6850382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:335-499
               
               
               Cow position:chr6:21475961-21475790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:336-480
               
               
               Cow position:chr6:61576040-61575901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):90, 61

               
               
               Conread position:336-494
               
               
               Cow position:chr6:48278660-48278821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):32, 71

               
               
               Conread position:336-496
               
               
               Cow position:chr6:45535588-45535744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):91, 55

               
               
               Conread position:336-499
               
               
               Cow position:chr6:16352141-16352291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):90, 11

               
               
               Conread position:336-499
               
               
               Cow position:chr6:36939109-36938930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:336-499
               
               
               Cow position:chr6:37149417-37149252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):20, 70

               
               
               Conread position:336-499
               
               
               Cow position:chr6:38207250-38207427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):9, 101

               
               
               Conread position:336-499
               
               
               Cow position:chr6:60778004-60777833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):27, 82

               
               
               Conread position:337-496
               
               
               Cow position:chr6:12631727-12631564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):23, 71

               
               
               Conread position:337-499
               
               
               Cow position:chr6:37692983-37692813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):22, 114

               
               
               Conread position:338-505
               
               
               Cow position:chr6:19446486-19446305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:341-498
               
               
               Cow position:chr6:9832427-9832270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):23, 73

               
               
               Conread position:360-484
               
               
               Cow position:chr6:48379409-48379536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:360-491
               
               
               Cow position:chr6:27219368-27219238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):67, 42

               
               
               Conread position:360-499
               
               
               Cow position:chr6:14263687-14263828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):40, 95

               
               
               Conread position:360-499
               
               
               Cow position:chr6:35842862-35842721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr6:60740212-60740077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):63, 30

               
               
               Conread position:360-499
               
               
               Cow position:chr6:69153614-69153472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:360-501
               
               
               Cow position:chr6:67187883-67187745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):70, 41

               
               
               Conread position:362-499
               
               
               Cow position:chr6:66947623-66947759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):61, 42

               
               
               Conread position:365-499
               
               
               Cow position:chr6:17794562-17794701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:371-499
               
               
               Cow position:chr6:58076587-58076456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:389-487
               
               
               Cow position:chr6:50882755-50882656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:83
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:389-499
               
               
               Cow position:chr6:7568297-7568187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:389-499
               
               
               Cow position:chr6:54867691-54867580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:276-499
               
               
               Cow position:chr7:55060564-55060329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):16, 51

               
               
               Conread position:278-493
               
               
               Cow position:chr7:36996644-36996433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):39, 8

               
               
               Conread position:284-499
               
               
               Cow position:chr7:33104439-33104227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):77, 20

               
               
               Conread position:286-484
               
               
               Cow position:chr7:5199273-5199471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):105, 41

               
               
               Conread position:286-499
               
               
               Cow position:chr7:51685302-51685079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):25, 49

               
               
               Conread position:287-496
               
               
               Cow position:chr7:14029591-14029377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):51, 17

               
               
               Conread position:288-495
               
               
               Cow position:chr7:40308241-40308450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):12, 64

               
               
               Conread position:290-463
               
               
               Cow position:chr7:24233569-24233395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):71, 14

               
               
               Conread position:293-480
               
               
               Cow position:chr7:53996576-53996384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):71, 43

               
               
               Conread position:293-499
               
               
               Cow position:chr7:46823944-46823735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):33, 59

               
               
               Conread position:295-499
               
               
               Cow position:chr7:40009102-40008894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):68, 19

               
               
               Conread position:296-493
               
               
               Cow position:chr7:1355925-1356120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):126, 8

               
               
               Conread position:296-497
               
               
               Cow position:chr7:34216483-34216276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):30, 115

               
               
               Conread position:296-498
               
               
               Cow position:chr7:11511993-11511790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):77, 8

               
               
               Conread position:296-499
               
               
               Cow position:chr7:64135188-64135402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:296-504
               
               
               Cow position:chr7:31694365-31694579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):37, 30

               
               
               Conread position:297-499
               
               
               Cow position:chr7:23678199-23677991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):66, 11

               
               
               Conread position:299-503
               
               
               Cow position:chr7:12329954-12330165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):62, 28

               
               
               Conread position:299-505
               
               
               Cow position:chr7:14519768-14519982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):26, 36

               
               
               Conread position:300-499
               
               
               Cow position:chr7:48020696-48020493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):61, 11

               
               
               Conread position:302-501
               
               
               Cow position:chr7:30012100-30011895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):59, 114

               
               
               Conread position:303-484
               
               
               Cow position:chr7:37394558-37394378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):30, 23

               
               
               Conread position:306-484
               
               
               Cow position:chr7:68540341-68540520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):101, 30

               
               
               Conread position:309-503
               
               
               Cow position:chr7:23256017-23255815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):29, 5

               
               
               Conread position:312-473
               
               
               Cow position:chr7:10397099-10397264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):74, 23

               
               
               Conread position:312-499
               
               
               Cow position:chr7:3160057-3159869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):51, 22

               
               
               Conread position:312-503
               
               
               Cow position:chr7:35295897-35296081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):17, 76

               
               
               Conread position:312-503
               
               
               Cow position:chr7:39093663-39093865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):52, 15

               
               
               Conread position:313-499
               
               
               Cow position:chr7:18958288-18958476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):10, 40

               
               
               Conread position:314-468
               
               
               Cow position:chr7:33805338-33805186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):19, 37

               
               
               Conread position:314-479
               
               
               Cow position:chr7:49068579-49068756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:314-483
               
               
               Cow position:chr7:65597366-65597545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):47, 29

               
               
               Conread position:314-484
               
               
               Cow position:chr7:29505371-29505195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):48, 96

               
               
               Conread position:314-487
               
               
               Cow position:chr7:63300459-63300273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:314-499
               
               
               Cow position:chr7:30154761-30154941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):118, 36

               
               
               Conread position:314-499
               
               
               Cow position:chr7:50442646-50442829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):17, 37

               
               
               Conread position:314-502
               
               
               Cow position:chr7:2873932-2873742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):15, 146

               
               
               Conread position:314-504
               
               
               Cow position:chr7:39514494-39514293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 13

               
               
               Conread position:314-504
               
               
               Cow position:chr7:39516256-39516457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 13

               
               
               Conread position:315-492
               
               
               Cow position:chr7:14450585-14450396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:315-499
               
               
               Cow position:chr7:27290238-27290434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:315-499
               
               
               Cow position:chr7:51020028-51019843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):83, 45

               
               
               Conread position:316-484
               
               
               Cow position:chr7:11961878-11962051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):10, 82

               
               
               Conread position:317-476
               
               
               Cow position:chr7:15861559-15861400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):105, 39

               
               
               Conread position:317-484
               
               
               Cow position:chr7:63121159-63121336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:317-492
               
               
               Cow position:chr7:30017279-30017446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):111, 13

               
               
               Conread position:317-500
               
               
               Cow position:chr7:62542925-62542727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:318-468
               
               
               Cow position:chr7:36590259-36590405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):100, 16

               
               
               Conread position:318-478
               
               
               Cow position:chr7:50860251-50860094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):46, 85

               
               
               Conread position:318-484
               
               
               Cow position:chr7:58800425-58800249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):43, 149

               
               
               Conread position:318-492
               
               
               Cow position:chr7:39444366-39444540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):19, 96

               
               
               Conread position:318-493
               
               
               Cow position:chr7:24008199-24008374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):13, 85

               
               
               Conread position:318-499
               
               
               Cow position:chr7:19466002-19466185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):16, 89

               
               
               Conread position:318-503
               
               
               Cow position:chr7:28359143-28359329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):11, 77

               
               
               Conread position:319-482
               
               
               Cow position:chr7:11487422-11487591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:319-497
               
               
               Cow position:chr7:60121803-60121620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 15

               
               
               Conread position:319-499
               
               
               Cow position:chr7:14524724-14524544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):64, 15

               
               
               Conread position:320-473
               
               
               Cow position:chr7:15855091-15855240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:320-480
               
               
               Cow position:chr7:50166281-50166113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):40, 73

               
               
               Conread position:320-484
               
               
               Cow position:chr7:44942799-44942637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):13, 31

               
               
               Conread position:320-499
               
               
               Cow position:chr7:25722420-25722601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:320-499
               
               
               Cow position:chr7:31049346-31049527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 83

               
               
               Conread position:320-553
               
               
               Cow position:chr7:42460920-42460669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):41, 212

               
               
               Conread position:321-473
               
               
               Cow position:chr7:51910364-51910212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):28, 85

               
               
               Conread position:322-484
               
               
               Cow position:chr7:7475855-7476033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:322-495
               
               
               Cow position:chr7:44596457-44596633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):52, 12

               
               
               Conread position:322-499
               
               
               Cow position:chr7:4812258-4812081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):87, 18

               
               
               Conread position:323-490
               
               
               Cow position:chr7:50372335-50372167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):70, 101

               
               
               Conread position:323-491
               
               
               Cow position:chr7:40110700-40110856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):103, 7

               
               
               Conread position:324-484
               
               
               Cow position:chr7:68170353-68170520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:325-493
               
               
               Cow position:chr7:46003097-46003265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):97, 5

               
               
               Conread position:327-489
               
               
               Cow position:chr7:58919579-58919422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:327-492
               
               
               Cow position:chr7:59688782-59688611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):36, 141

               
               
               Conread position:327-499
               
               
               Cow position:chr7:38429471-38429646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):34, 83

               
               
               Conread position:332-497
               
               
               Cow position:chr7:39947017-39947182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):22, 18

               
               
               Conread position:333-498
               
               
               Cow position:chr7:39639674-39639840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:333-505
               
               
               Cow position:chr7:24220891-24220727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:334-490
               
               
               Cow position:chr7:53211449-53211292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:334-499
               
               
               Cow position:chr7:6271524-6271348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:334-499
               
               
               Cow position:chr7:32324434-32324266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):30, 68

               
               
               Conread position:334-500
               
               
               Cow position:chr7:10414901-10415069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):29, 69

               
               
               Conread position:334-500
               
               
               Cow position:chr7:41869198-41869366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):88, 66

               
               
               Conread position:335-486
               
               
               Cow position:chr7:37651738-37651574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:335-504
               
               
               Cow position:chr7:33810944-33810772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):26, 65

               
               
               Conread position:336-484
               
               
               Cow position:chr7:30536331-30536489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):21, 136

               
               
               Conread position:336-493
               
               
               Cow position:chr7:24563870-24564025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):92, 48

               
               
               Conread position:336-495
               
               
               Cow position:chr7:48721668-48721834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):28, 144

               
               
               Conread position:336-499
               
               
               Cow position:chr7:33386153-33385987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):27, 76

               
               
               Conread position:336-508
               
               
               Cow position:chr7:39402446-39402264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:337-501
               
               
               Cow position:chr7:58329668-58329839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):27, 47

               
               
               Conread position:340-506
               
               
               Cow position:chr7:39129368-39129550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:344-483
               
               
               Cow position:chr7:12212147-12212295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:344-497
               
               
               Cow position:chr7:64002377-64002532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:356-499
               
               
               Cow position:chr7:40710336-40710193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 52

               
               
               Conread position:360-490
               
               
               Cow position:chr7:8235086-8234953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:360-498
               
               
               Cow position:chr7:43450748-43450606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr7:25263574-25263433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):47, 20

               
               
               Conread position:360-499
               
               
               Cow position:chr7:25464773-25464631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr7:29682244-29682386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr7:47547609-47547474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:360-503
               
               
               Cow position:chr7:20411318-20411464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:360-503
               
               
               Cow position:chr7:26309462-26309608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:360-503
               
               
               Cow position:chr7:37698012-37697866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:360-503
               
               
               Cow position:chr7:43484328-43484468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):68, 41

               
               
               Conread position:361-499
               
               
               Cow position:chr7:2579033-2579172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:361-499
               
               
               Cow position:chr7:4060475-4060330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:361-499
               
               
               Cow position:chr7:5906838-5906699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:361-504
               
               
               Cow position:chr7:1761933-1761791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):65, 41

               
               
               Conread position:362-499
               
               
               Cow position:chr7:11884081-11884216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):64, 34

               
               
               Conread position:362-504
               
               
               Cow position:chr7:18388194-18388339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:382-499
               
               
               Cow position:chr7:34005143-34005026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:94
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:385-496
               
               
               Cow position:chr7:23089967-23090078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):41, 102

               
               
               Conread position:389-499
               
               
               Cow position:chr7:24461127-24461016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:92
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:391-499
               
               
               Cow position:chr7:11015856-11015747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:90
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:391-510
               
               
               Cow position:chr7:1783043-1783163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:279-493
               
               
               Cow position:chr8:33020464-33020253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):147, 28

               
               
               Conread position:287-504
               
               
               Cow position:chr8:10832174-10832406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):37, 52

               
               
               Conread position:289-470
               
               
               Cow position:chr8:53338419-53338601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):34, 44

               
               
               Conread position:292-502
               
               
               Cow position:chr8:55214496-55214279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):9, 35

               
               
               Conread position:295-475
               
               
               Cow position:chr8:51511614-51511799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):68, 33

               
               
               Conread position:295-494
               
               
               Cow position:chr8:21057853-21058048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):127, 35

               
               
               Conread position:295-499
               
               
               Cow position:chr8:1620477-1620692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:296-483
               
               
               Cow position:chr8:31902443-31902636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):66, 114

               
               
               Conread position:297-495
               
               
               Cow position:chr8:36471559-36471359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):103, 17

               
               
               Conread position:299-478
               
               
               Cow position:chr8:20617521-20617335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):29, 54

               
               
               Conread position:306-502
               
               
               Cow position:chr8:31767799-31768007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):27, 107

               
               
               Conread position:307-484
               
               
               Cow position:chr8:39898921-39898746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):57, 113

               
               
               Conread position:307-504
               
               
               Cow position:chr8:43163485-43163674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):21, 59

               
               
               Conread position:308-497
               
               
               Cow position:chr8:690058-690244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):117, 42

               
               
               Conread position:308-504
               
               
               Cow position:chr8:39545232-39545028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:310-484
               
               
               Cow position:chr8:49305516-49305701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:311-478
               
               
               Cow position:chr8:55070943-55070772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):53, 19

               
               
               Conread position:312-468
               
               
               Cow position:chr8:32243825-32243661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):50, 22

               
               
               Conread position:312-499
               
               
               Cow position:chr8:43112624-43112812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):49, 20

               
               
               Conread position:313-499
               
               
               Cow position:chr8:54306584-54306389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):15, 105

               
               
               Conread position:313-547
               
               
               Cow position:chr8:39968053-39968297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):46, 23

               
               
               Conread position:314-464
               
               
               Cow position:chr8:1847821-1847987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:314-479
               
               
               Cow position:chr8:33664114-33663957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):113, 13

               
               
               Conread position:314-483
               
               
               Cow position:chr8:20897576-20897395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):16, 23

               
               
               Conread position:314-484
               
               
               Cow position:chr8:52197228-52197408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):50, 142

               
               
               Conread position:314-493
               
               
               Cow position:chr8:41715150-41715340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):12, 65

               
               
               Conread position:314-497
               
               
               Cow position:chr8:50282099-50281911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):30, 61

               
               
               Conread position:314-499
               
               
               Cow position:chr8:8323638-8323836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:314-499
               
               
               Cow position:chr8:24419059-24419243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):59, 20

               
               
               Conread position:314-502
               
               
               Cow position:chr8:38993957-38993764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):47, 13

               
               
               Conread position:316-484
               
               
               Cow position:chr8:24488705-24488527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):21, 48

               
               
               Conread position:316-495
               
               
               Cow position:chr8:40697097-40696912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:316-499
               
               
               Cow position:chr8:20783036-20783230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):13, 21

               
               
               Conread position:316-499
               
               
               Cow position:chr8:27662081-27661895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):45, 14

               
               
               Conread position:316-499
               
               
               Cow position:chr8:53251470-53251669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:317-493
               
               
               Cow position:chr8:1586620-1586449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):12, 80

               
               
               Conread position:317-497
               
               
               Cow position:chr8:47170170-47169980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):43, 34

               
               
               Conread position:317-499
               
               
               Cow position:chr8:49543109-49542916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):13, 71

               
               
               Conread position:317-504
               
               
               Cow position:chr8:38996883-38996684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:318-476
               
               
               Cow position:chr8:43439830-43439668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:318-483
               
               
               Cow position:chr8:33125715-33125544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):45, 85

               
               
               Conread position:318-484
               
               
               Cow position:chr8:53641638-53641464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):17, 35

               
               
               Conread position:318-493
               
               
               Cow position:chr8:32932288-32932110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):40, 12

               
               
               Conread position:318-495
               
               
               Cow position:chr8:45879252-45879071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):11, 91

               
               
               Conread position:318-495
               
               
               Cow position:chr8:45925834-45925653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):11, 87

               
               
               Conread position:318-499
               
               
               Cow position:chr8:27138575-27138761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:318-502
               
               
               Cow position:chr8:27033992-27033802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:319-470
               
               
               Cow position:chr8:53927794-53927953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:319-499
               
               
               Cow position:chr8:32192899-32192724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):92, 16

               
               
               Conread position:320-499
               
               
               Cow position:chr8:3057062-3056874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 10

               
               
               Conread position:320-499
               
               
               Cow position:chr8:21600675-21600480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:320-499
               
               
               Cow position:chr8:21961656-21961473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):71, 63

               
               
               Conread position:320-499
               
               
               Cow position:chr8:35816906-35817085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):28, 39

               
               
               Conread position:320-499
               
               
               Cow position:chr8:38852314-38852122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):44, 16

               
               
               Conread position:320-499
               
               
               Cow position:chr8:46964950-46964769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):13, 31

               
               
               Conread position:321-491
               
               
               Cow position:chr8:5877860-5877686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):62, 170

               
               
               Conread position:321-497
               
               
               Cow position:chr8:29173428-29173245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 81

               
               
               Conread position:321-498
               
               
               Cow position:chr8:39556350-39556164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 9

               
               
               Conread position:321-499
               
               
               Cow position:chr8:12796047-12795858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):16, 11

               
               
               Conread position:321-502
               
               
               Cow position:chr8:48182722-48182533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):39, 9

               
               
               Conread position:322-495
               
               
               Cow position:chr8:55348540-55348372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):16, 73

               
               
               Conread position:322-499
               
               
               Cow position:chr8:13454404-13454590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):42, 21

               
               
               Conread position:323-499
               
               
               Cow position:chr8:5894145-5893978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:324-495
               
               
               Cow position:chr8:35497468-35497646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:324-499
               
               
               Cow position:chr8:21911862-21911670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:324-499
               
               
               Cow position:chr8:36034745-36034934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:325-484
               
               
               Cow position:chr8:55064151-55063983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):43, 9

               
               
               Conread position:325-486
               
               
               Cow position:chr8:31297482-31297313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 11

               
               
               Conread position:325-499
               
               
               Cow position:chr8:37347232-37347421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:325-513
               
               
               Cow position:chr8:5476303-5476488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):100, 59

               
               
               Conread position:327-491
               
               
               Cow position:chr8:29958613-29958440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):36, 16

               
               
               Conread position:328-484
               
               
               Cow position:chr8:25455601-25455454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):98, 38

               
               
               Conread position:334-482
               
               
               Cow position:chr8:58393766-58393612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):38, 75

               
               
               Conread position:334-483
               
               
               Cow position:chr8:39487430-39487587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:334-492
               
               
               Cow position:chr8:58417887-58417723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:334-494
               
               
               Cow position:chr8:24427002-24427162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):88, 72

               
               
               Conread position:334-495
               
               
               Cow position:chr8:16061281-16061105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:334-499
               
               
               Cow position:chr8:53633031-53633189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:335-468
               
               
               Cow position:chr8:24871682-24871819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):20, 10

               
               
               Conread position:336-484
               
               
               Cow position:chr8:20910870-20911028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):32, 28

               
               
               Conread position:336-495
               
               
               Cow position:chr8:19698846-19698678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:336-495
               
               
               Cow position:chr8:19785064-19784896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):28, 69

               
               
               Conread position:336-502
               
               
               Cow position:chr8:37275963-37275789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):60, 141

               
               
               Conread position:337-492
               
               
               Cow position:chr8:25276660-25276504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):121, 60

               
               
               Conread position:338-484
               
               
               Cow position:chr8:6224238-6224388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):25, 71

               
               
               Conread position:360-495
               
               
               Cow position:chr8:31265738-31265872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):68, 47

               
               
               Conread position:360-497
               
               
               Cow position:chr8:17199257-17199396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr8:11003624-11003766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr8:19204270-19204412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr8:28210159-28210016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr8:30324490-30324357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:360-499
               
               
               Cow position:chr8:45859984-45859842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:360-503
               
               
               Cow position:chr8:6194155-6194007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:371-482
               
               
               Cow position:chr8:41219491-41219378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:371-497
               
               
               Cow position:chr8:35580474-35580599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):55, 31

               
               
               Conread position:371-499
               
               
               Cow position:chr8:46743153-46743282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:372-484
               
               
               Cow position:chr8:3762312-3762197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:379-493
               
               
               Cow position:chr8:49444654-49444539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:93
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:382-502
               
               
               Cow position:chr8:20339424-20339306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):44, 10

               
               
               Conread position:389-499
               
               
               Cow position:chr8:14109534-14109424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):37, 27

               
               
               Conread position:392-502
               
               
               Cow position:chr8:36672060-36671949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:91
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:397-499
               
               
               Cow position:chr8:4525218-4525115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:86
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:403-495
               
               
               Cow position:chr8:4940188-4940281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:82
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):23, 47

               
               
               Conread position:403-497
               
               
               Cow position:chr8:28884968-28884873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:82
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:277-501
               
               
               Cow position:chr9:3198407-3198179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):8, 38

               
               
               Conread position:281-500
               
               
               Cow position:chr9:34423399-34423628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):9, 26

               
               
               Conread position:284-499
               
               
               Cow position:chr9:34484367-34484601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:288-495
               
               
               Cow position:chr9:9199985-9199780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):49, 30

               
               
               Conread position:288-503
               
               
               Cow position:chr9:12337688-12337912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):76, 29

               
               
               Conread position:290-499
               
               
               Cow position:chr9:26477009-26477222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):74, 18

               
               
               Conread position:291-499
               
               
               Cow position:chr9:9091316-9091099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):8, 36

               
               
               Conread position:291-499
               
               
               Cow position:chr9:13670436-13670639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):20, 59

               
               
               Conread position:296-490
               
               
               Cow position:chr9:56854880-56855068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):7, 60

               
               
               Conread position:296-499
               
               
               Cow position:chr9:26279371-26279163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):56, 8

               
               
               Conread position:297-493
               
               
               Cow position:chr9:26683627-26683430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:298-499
               
               
               Cow position:chr9:5110660-5110864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):58, 45

               
               
               Conread position:299-495
               
               
               Cow position:chr9:50310965-50310760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):61, 35

               
               
               Conread position:305-498
               
               
               Cow position:chr9:20828707-20828912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:306-499
               
               
               Cow position:chr9:36634317-36634513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):22, 46

               
               
               Conread position:308-477
               
               
               Cow position:chr9:53323970-53323800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):94, 42

               
               
               Conread position:308-484
               
               
               Cow position:chr9:8645071-8645257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):56, 26

               
               
               Conread position:311-498
               
               
               Cow position:chr9:54677067-54677269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):53, 23

               
               
               Conread position:311-502
               
               
               Cow position:chr9:11448000-11447799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):20, 122

               
               
               Conread position:312-474
               
               
               Cow position:chr9:35534193-35534018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:312-484
               
               
               Cow position:chr9:39011657-39011478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:312-493
               
               
               Cow position:chr9:5836588-5836764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):17, 6

               
               
               Conread position:313-493
               
               
               Cow position:chr9:37062412-37062594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:313-499
               
               
               Cow position:chr9:15806117-15805917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:314-493
               
               
               Cow position:chr9:54364036-54363860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 88

               
               
               Conread position:314-499
               
               
               Cow position:chr9:38624815-38624618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:315-499
               
               
               Cow position:chr9:22447481-22447288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:315-499
               
               
               Cow position:chr9:25375922-25375730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):24, 164

               
               
               Conread position:316-499
               
               
               Cow position:chr9:36624104-36623919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):17, 32

               
               
               Conread position:317-483
               
               
               Cow position:chr9:18008937-18008763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):20, 44

               
               
               Conread position:317-500
               
               
               Cow position:chr9:6392477-6392654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):107, 83

               
               
               Conread position:318-483
               
               
               Cow position:chr9:54611502-54611327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:318-490
               
               
               Cow position:chr9:28747702-28747523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):54, 90

               
               
               Conread position:318-493
               
               
               Cow position:chr9:8967758-8967934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):11, 79

               
               
               Conread position:318-493
               
               
               Cow position:chr9:37127476-37127651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):11, 40

               
               
               Conread position:318-499
               
               
               Cow position:chr9:8613397-8613205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:318-499
               
               
               Cow position:chr9:35832797-35832613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):50, 16

               
               
               Conread position:318-500
               
               
               Cow position:chr9:61019550-61019355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:318-502
               
               
               Cow position:chr9:765832-766009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):105, 18

               
               
               Conread position:319-483
               
               
               Cow position:chr9:34286616-34286789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):45, 15

               
               
               Conread position:319-490
               
               
               Cow position:chr9:54630141-54630307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):119, 15

               
               
               Conread position:319-493
               
               
               Cow position:chr9:48901018-48900836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:319-499
               
               
               Cow position:chr9:12786660-12786467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:319-499
               
               
               Cow position:chr9:34135546-34135722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:319-499
               
               
               Cow position:chr9:34283778-34283959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):36, 15

               
               
               Conread position:319-499
               
               
               Cow position:chr9:36457814-36458005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):43, 15

               
               
               Conread position:319-499
               
               
               Cow position:chr9:54681338-54681515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):76, 57

               
               
               Conread position:320-493
               
               
               Cow position:chr9:19657156-19656976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:320-499
               
               
               Cow position:chr9:9311687-9311864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):12, 31

               
               
               Conread position:320-499
               
               
               Cow position:chr9:21292588-21292402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:320-503
               
               
               Cow position:chr9:56827303-56827486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):89, 17

               
               
               Conread position:320-527
               
               
               Cow position:chr9:34362554-34362771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):44, 201

               
               
               Conread position:321-498
               
               
               Cow position:chr9:35306530-35306341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):42, 62

               
               
               Conread position:321-499
               
               
               Cow position:chr9:41644931-41644744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):43, 9

               
               
               Conread position:322-466
               
               
               Cow position:chr9:39142536-39142391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):68, 10

               
               
               Conread position:322-493
               
               
               Cow position:chr9:43202168-43202334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):106, 35

               
               
               Conread position:322-501
               
               
               Cow position:chr9:5155922-5156109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:323-482
               
               
               Cow position:chr9:54086189-54086025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):41, 20

               
               
               Conread position:323-484
               
               
               Cow position:chr9:35932993-35932823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 71

               
               
               Conread position:323-499
               
               
               Cow position:chr9:22434102-22433922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):40, 13

               
               
               Conread position:324-484
               
               
               Cow position:chr9:16216801-16216972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):38, 12

               
               
               Conread position:324-499
               
               
               Cow position:chr9:8901407-8901221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):9, 14

               
               
               Conread position:324-499
               
               
               Cow position:chr9:11168567-11168736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:324-499
               
               
               Cow position:chr9:32089215-32089395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):74, 10

               
               
               Conread position:324-499
               
               
               Cow position:chr9:35466700-35466516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:327-499
               
               
               Cow position:chr9:5342420-5342242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):37, 7

               
               
               Conread position:327-499
               
               
               Cow position:chr9:7806129-7805955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:327-499
               
               
               Cow position:chr9:9443777-9443595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:332-499
               
               
               Cow position:chr9:32307393-32307225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):62, 18

               
               
               Conread position:334-481
               
               
               Cow position:chr9:3369828-3369982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):53, 127

               
               
               Conread position:334-484
               
               
               Cow position:chr9:21460321-21460160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:334-493
               
               
               Cow position:chr9:10316544-10316384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:334-493
               
               
               Cow position:chr9:12773526-12773690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):25, 78

               
               
               Conread position:334-493
               
               
               Cow position:chr9:20525245-20525405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:334-499
               
               
               Cow position:chr9:27345757-27345578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:334-499
               
               
               Cow position:chr9:40005309-40005480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:334-500
               
               
               Cow position:chr9:11161170-11161336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):88, 112

               
               
               Conread position:336-439
               
               
               Cow position:chr9:6226333-6226228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:336-499
               
               
               Cow position:chr9:41282846-41283021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:337-499
               
               
               Cow position:chr9:52998532-52998374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):86, 20

               
               
               Conread position:338-499
               
               
               Cow position:chr9:42446150-42445977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:340-503
               
               
               Cow position:chr9:5835988-5836160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):21, 64

               
               
               Conread position:341-498
               
               
               Cow position:chr9:9815252-9815418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:353-484
               
               
               Cow position:chr9:11393347-11393216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):8, 55

               
               
               Conread position:359-484
               
               
               Cow position:chr9:9243410-9243542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:360-480
               
               
               Cow position:chr9:15215823-15215700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:360-481
               
               
               Cow position:chr9:40603534-40603656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:360-483
               
               
               Cow position:chr9:33541919-33542045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:360-496
               
               
               Cow position:chr9:55288022-55287886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):66, 42

               
               
               Conread position:360-499
               
               
               Cow position:chr9:34707443-34707306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):66, 47

               
               
               Conread position:360-499
               
               
               Cow position:chr9:44093218-44093076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:360-502
               
               
               Cow position:chr9:63185830-63185686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:360-503
               
               
               Cow position:chr9:27308011-27307872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:362-494
               
               
               Cow position:chr9:52258197-52258061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):32, 120

               
               
               Conread position:371-499
               
               
               Cow position:chr9:1729799-1729668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:371-499
               
               
               Cow position:chr9:41964855-41964729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):52, 25

               
               
               Conread position:377-500
               
               
               Cow position:chr9:9551974-9552096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:385-494
               
               
               Cow position:chr9:9088498-9088609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:392-499
               
               
               Cow position:chr9:43342229-43342337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:197-500
               
               
               Cow position:chrX:6278162-6278449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):159, 16

               
               
               Conread position:275-499
               
               
               Cow position:chrX:34565562-34565336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):17, 37

               
               
               Conread position:281-499
               
               
               Cow position:chrX:17232015-17231785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):84, 23

               
               
               Conread position:284-499
               
               
               Cow position:chrX:39179973-39180183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):38, 26

               
               
               Conread position:285-493
               
               
               Cow position:chrX:35986091-35985874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:286-484
               
               
               Cow position:chrX:4169772-4169966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:286-499
               
               
               Cow position:chrX:42449745-42449964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):37, 70

               
               
               Conread position:287-484
               
               
               Cow position:chrX:27668689-27668893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):77, 117

               
               
               Conread position:288-484
               
               
               Cow position:chrX:13177214-13177411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):75, 7

               
               
               Conread position:296-499
               
               
               Cow position:chrX:15546145-15545932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:296-503
               
               
               Cow position:chrX:12997-12796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):37, 55

               
               
               Conread position:299-469
               
               
               Cow position:chrX:35509427-35509599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:299-478
               
               
               Cow position:chrX:12979577-12979763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):61, 33

               
               
               Conread position:299-484
               
               
               Cow position:chrX:4559983-4559798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):108, 28

               
               
               Conread position:299-484
               
               
               Cow position:chrX:38218969-38218779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):65, 8

               
               
               Conread position:299-499
               
               
               Cow position:chrX:20887388-20887591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):66, 107

               
               
               Conread position:300-484
               
               
               Cow position:chrX:46068514-46068694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):126, 50

               
               
               Conread position:300-496
               
               
               Cow position:chrX:7351561-7351350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:302-493
               
               
               Cow position:chrX:13005143-13005338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:302-499
               
               
               Cow position:chrX:24332022-24331826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):105, 35

               
               
               Conread position:303-498
               
               
               Cow position:chrX:19717767-19717571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):60, 9

               
               
               Conread position:305-478
               
               
               Cow position:chrX:35659049-35658867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:306-489
               
               
               Cow position:chrX:24277557-24277379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:308-499
               
               
               Cow position:chrX:3806923-3806732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):11, 46

               
               
               Conread position:310-499
               
               
               Cow position:chrX:7179134-7178946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):19, 96

               
               
               Conread position:310-499
               
               
               Cow position:chrX:42331522-42331334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):49, 24

               
               
               Conread position:311-498
               
               
               Cow position:chrX:16323776-16323968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):22, 37

               
               
               Conread position:311-503
               
               
               Cow position:chrX:37867503-37867299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:312-459
               
               
               Cow position:chrX:4458594-4458444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:312-499
               
               
               Cow position:chrX:11656324-11656131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):49, 20

               
               
               Conread position:312-499
               
               
               Cow position:chrX:20345687-20345500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):80, 15

               
               
               Conread position:313-483
               
               
               Cow position:chrX:42875458-42875278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):24, 101

               
               
               Conread position:313-504
               
               
               Cow position:chrX:6389326-6389126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):51, 158

               
               
               Conread position:314-440
               
               
               Cow position:chrX:4264668-4264538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:314-484
               
               
               Cow position:chrX:26881830-26882015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:314-494
               
               
               Cow position:chrX:51656-51846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:314-494
               
               
               Cow position:chrX:27431676-27431863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):10, 91

               
               
               Conread position:314-499
               
               
               Cow position:chrX:2314374-2314569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):50, 18

               
               
               Conread position:314-499
               
               
               Cow position:chrX:6907170-6907359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):12, 46

               
               
               Conread position:314-499
               
               
               Cow position:chrX:27705833-27705636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:314-499
               
               
               Cow position:chrX:42246945-42247132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):24, 37

               
               
               Conread position:314-499
               
               
               Cow position:chrX:46588066-46587872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):47, 76

               
               
               Conread position:314-499
               
               
               Cow position:chrX:46910056-46909865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):11, 96

               
               
               Conread position:315-493
               
               
               Cow position:chrX:40055981-40056161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:315-494
               
               
               Cow position:chrX:42087073-42086882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:315-495
               
               
               Cow position:chrX:15146954-15147143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:315-499
               
               
               Cow position:chrX:19018582-19018781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:316-493
               
               
               Cow position:chrX:37140923-37141113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):13, 159

               
               
               Conread position:318-483
               
               
               Cow position:chrX:17966565-17966407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):108, 16

               
               
               Conread position:318-483
               
               
               Cow position:chrX:30041858-30042025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:318-486
               
               
               Cow position:chrX:34412090-34411909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:318-494
               
               
               Cow position:chrX:27175234-27175053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:318-497
               
               
               Cow position:chrX:6274112-6274294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:318-499
               
               
               Cow position:chrX:35285416-35285223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:318-502
               
               
               Cow position:chrX:22387001-22387203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:318-509
               
               
               Cow position:chrX:28923254-28923070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):47, 79

               
               
               Conread position:319-469
               
               
               Cow position:chrX:42311894-42311744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):19, 59

               
               
               Conread position:319-490
               
               
               Cow position:chrX:31983335-31983526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:319-494
               
               
               Cow position:chrX:39642387-39642567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):45, 140

               
               
               Conread position:319-498
               
               
               Cow position:chrX:4327941-4328132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:320-490
               
               
               Cow position:chrX:11602246-11602424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):17, 162

               
               
               Conread position:320-490
               
               
               Cow position:chrX:16984875-16984700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):53, 120

               
               
               Conread position:320-504
               
               
               Cow position:chrX:32747959-32747777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):43, 14

               
               
               Conread position:321-483
               
               
               Cow position:chrX:20339659-20339826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):40, 17

               
               
               Conread position:321-484
               
               
               Cow position:chrX:20583899-20583731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):41, 81

               
               
               Conread position:321-495
               
               
               Cow position:chrX:11614914-11614748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:321-496
               
               
               Cow position:chrX:11589127-11589314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:321-499
               
               
               Cow position:chrX:161638-161462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):42, 13

               
               
               Conread position:321-499
               
               
               Cow position:chrX:42855702-42855508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:322-483
               
               
               Cow position:chrX:30962640-30962811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):42, 8

               
               
               Conread position:322-499
               
               
               Cow position:chrX:30133089-30133268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):42, 8

               
               
               Conread position:326-495
               
               
               Cow position:chrX:38094292-38094466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):36, 84

               
               
               Conread position:327-475
               
               
               Cow position:chrX:36961941-36961790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):79, 9

               
               
               Conread position:327-484
               
               
               Cow position:chrX:3494817-3494980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):34, 85

               
               
               Conread position:327-487
               
               
               Cow position:chrX:231793-231956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):37, 80

               
               
               Conread position:327-495
               
               
               Cow position:chrX:23497465-23497637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):34, 7

               
               
               Conread position:327-499
               
               
               Cow position:chrX:38302047-38301859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:327-503
               
               
               Cow position:chrX:41166597-41166783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):34, 7

               
               
               Conread position:332-499
               
               
               Cow position:chrX:35681795-35681617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):27, 114

               
               
               Conread position:332-504
               
               
               Cow position:chrX:41027387-41027204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):27, 5

               
               
               Conread position:334-468
               
               
               Cow position:chrX:21306-21171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:334-478
               
               
               Cow position:chrX:42380886-42381041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:334-483
               
               
               Cow position:chrX:24633912-24633761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:334-484
               
               
               Cow position:chrX:20168781-20168623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:334-484
               
               
               Cow position:chrX:45968363-45968213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):102, 75

               
               
               Conread position:334-493
               
               
               Cow position:chrX:18964608-18964773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:334-493
               
               
               Cow position:chrX:21288388-21288552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:334-499
               
               
               Cow position:chrX:27270595-27270425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):38, 75

               
               
               Conread position:334-499
               
               
               Cow position:chrX:38549673-38549497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:334-499
               
               
               Cow position:chrX:40680841-40680664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:334-500
               
               
               Cow position:chrX:27261416-27261241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:334-509
               
               
               Cow position:chrX:40337137-40336949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:335-495
               
               
               Cow position:chrX:35269081-35268915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:335-499
               
               
               Cow position:chrX:16575324-16575161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):91, 41

               
               
               Conread position:336-498
               
               
               Cow position:chrX:8327129-8326955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:336-499
               
               
               Cow position:chrX:6640648-6640477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):28, 107

               
               
               Conread position:336-499
               
               
               Cow position:chrX:27074827-27075001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:338-497
               
               
               Cow position:chrX:23097996-23098154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):55, 117

               
               
               Conread position:340-496
               
               
               Cow position:chrX:26692431-26692264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:346-499
               
               
               Cow position:chrX:31252613-31252458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):61, 114

               
               
               Conread position:346-499
               
               
               Cow position:chrX:34503133-34502970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:358-501
               
               
               Cow position:chrX:34270754-34270609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):49, 25

               
               
               Conread position:360-483
               
               
               Cow position:chrX:29601638-29601762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:360-494
               
               
               Cow position:chrX:14925464-14925326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:360-495
               
               
               Cow position:chrX:1122355-1122493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:360-495
               
               
               Cow position:chrX:23188598-23188730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):66, 41

               
               
               Conread position:360-497
               
               
               Cow position:chrX:40543337-40543469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:360-499
               
               
               Cow position:chrX:10237722-10237863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:360-499
               
               
               Cow position:chrX:11653958-11653820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):66, 43

               
               
               Conread position:360-499
               
               
               Cow position:chrX:28068042-28067900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:360-499
               
               
               Cow position:chrX:31294378-31294522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:360-499
               
               
               Cow position:chrX:34420927-34420784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:360-499
               
               
               Cow position:chrX:35885541-35885677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):66, 41

               
               
               Conread position:360-506
               
               
               Cow position:chrX:37867624-37867473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:361-499
               
               
               Cow position:chrX:34543975-34543834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:362-499
               
               
               Cow position:chrX:19761938-19761804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):64, 39

               
               
               Conread position:379-484
               
               
               Cow position:chrX:35019423-35019317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:87
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:382-484
               
               
               Cow position:chrX:23182814-23182918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:88
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:382-499
               
               
               Cow position:chrX:37062416-37062535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:389-494
               
               
               Cow position:chrX:16481409-16481515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:389-495
               
               
               Cow position:chrX:40355192-40355085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:87
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:389-496
               
               
               Cow position:chrX:23498519-23498627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:389-499
               
               
               Cow position:chrX:43730063-43730174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:389-503
               
               
               Cow position:chrX:7107664-7107548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:389-504
               
               
               Cow position:chrX:27393865-27393981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 0