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Cow genome map

           
Conread name:
           
Spl1-SPL010023D07
        

               
Conread position:
               
1-307
               

               
Cow position:
               
chr1:16581409-16581126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
300, 60
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr1:16586985-16586702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
300, 60
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chr1:89495130-89494801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
33, 64
               

               
Conread position:
               
3-312
               

               
Cow position:
               
chr1:44972407-44972714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 112
               

               
Conread position:
               
7-303
               

               
Cow position:
               
chr1:57972614-57972324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 136
               

               
Conread position:
               
9-297
               

               
Cow position:
               
chr1:29225533-29225817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
28, 22
               

               
Conread position:
               
11-316
               

               
Cow position:
               
chr1:13581882-13581583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
155, 81
               

               
Conread position:
               
16-638
               

               
Cow position:
               
chr1:77115614-77114967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
663
               

               
Alignm identity:
               
450
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 150
               

               
Conread position:
               
213-787
               

               
Cow position:
               
chr1:46836879-46837465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 61
               

               
Conread position:
               
292-717
               

               
Cow position:
               
chr1:61590871-61590417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
15, 30
               

               
Conread position:
               
351-721
               

               
Cow position:
               
chr1:67909933-67910326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
17, 343
               

               
Conread position:
               
351-787
               

               
Cow position:
               
chr1:76620090-76619630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
354-787
               

               
Cow position:
               
chr1:72082155-72082602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 318
               

               
Conread position:
               
358-680
               

               
Cow position:
               
chr1:50248307-50247972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
10, 170
               

               
Conread position:
               
358-717
               

               
Cow position:
               
chr1:88387622-88387999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 246
               

               
Conread position:
               
358-787
               

               
Cow position:
               
chr1:22906150-22906594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 13
               

               
Conread position:
               
358-787
               

               
Cow position:
               
chr1:29412789-29412354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 107
               

               
Conread position:
               
358-787
               

               
Cow position:
               
chr1:65387710-65388161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 15
               

               
Conread position:
               
358-787
               

               
Cow position:
               
chr1:82922760-82922317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 15
               

               
Conread position:
               
358-788
               

               
Cow position:
               
chr1:48248312-48248753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 18
               

               
Conread position:
               
358-791
               

               
Cow position:
               
chr1:39539561-39539144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
5, 19
               

               
Conread position:
               
358-791
               

               
Cow position:
               
chr1:77463052-77463490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 247
               

               
Conread position:
               
362-630
               

               
Cow position:
               
chr1:32909223-32909496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
63, 166
               

               
Conread position:
               
362-758
               

               
Cow position:
               
chr1:24206294-24205904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 32
               

               
Conread position:
               
363-787
               

               
Cow position:
               
chr1:13581592-13581147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
6, 211
               

               
Conread position:
               
366-696
               

               
Cow position:
               
chr1:22345406-22345751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 113
               

               
Conread position:
               
366-778
               

               
Cow position:
               
chr1:69416880-69416457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 157
               

               
Conread position:
               
373-583
               

               
Cow position:
               
chr1:31359810-31360026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
373-646
               

               
Cow position:
               
chr1:31417100-31416804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
373-666
               

               
Cow position:
               
chr1:29039446-29039757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
373-671
               

               
Cow position:
               
chr1:29976164-29975871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
134, 42
               

               
Conread position:
               
373-672
               

               
Cow position:
               
chr1:89733099-89732792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
50, 139
               

               
Conread position:
               
373-734
               

               
Cow position:
               
chr1:73197625-73197234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
38, 182
               

               
Conread position:
               
373-778
               

               
Cow position:
               
chr1:79635580-79635160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 215
               

               
Conread position:
               
373-778
               

               
Cow position:
               
chr1:89769129-89768703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 321
               

               
Conread position:
               
373-788
               

               
Cow position:
               
chr1:41519362-41518948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 65
               

               
Conread position:
               
373-791
               

               
Cow position:
               
chr1:72945153-72945583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 285
               

               
Conread position:
               
374-536
               

               
Cow position:
               
chr1:91446856-91447018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
112, 90
               

               
Conread position:
               
374-701
               

               
Cow position:
               
chr1:38417543-38417879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
46, 223
               

               
Conread position:
               
374-754
               

               
Cow position:
               
chr1:87969727-87970120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 159
               

               
Conread position:
               
374-778
               

               
Cow position:
               
chr1:61541704-61542114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 225
               

               
Conread position:
               
374-787
               

               
Cow position:
               
chr1:55320663-55320241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 26
               

               
Conread position:
               
375-745
               

               
Cow position:
               
chr1:56192753-56192361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 322
               

               
Conread position:
               
375-787
               

               
Cow position:
               
chr1:81862572-81862137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 313
               

               
Conread position:
               
376-624
               

               
Cow position:
               
chr1:76095650-76095385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
376-754
               

               
Cow position:
               
chr1:57135830-57136219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
44, 152
               

               
Conread position:
               
376-778
               

               
Cow position:
               
chr1:24652678-24653103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 10
               

               
Conread position:
               
376-788
               

               
Cow position:
               
chr1:67326522-67326111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 91
               

               
Conread position:
               
376-788
               

               
Cow position:
               
chr1:82367187-82367610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 223
               

               
Conread position:
               
377-750
               

               
Cow position:
               
chr1:72992906-72993295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
55, 245
               

               
Conread position:
               
381-620
               

               
Cow position:
               
chr1:78923643-78923897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
39, 184
               

               
Conread position:
               
381-717
               

               
Cow position:
               
chr1:23092067-23092407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
41, 69
               

               
Conread position:
               
381-787
               

               
Cow position:
               
chr1:31193128-31192725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 32
               

               
Conread position:
               
386-788
               

               
Cow position:
               
chr1:31402027-31401605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
32, 171
               

               
Conread position:
               
414-788
               

               
Cow position:
               
chr1:63503246-63503636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 191
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr10:16477866-16478181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
36, 51
               

               
Conread position:
               
3-256
               

               
Cow position:
               
chr10:58928348-58928600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
41, 63
               

               
Conread position:
               
10-305
               

               
Cow position:
               
chr10:36469330-36469043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 36
               

               
Conread position:
               
351-745
               

               
Cow position:
               
chr10:37771292-37771709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
353-787
               

               
Cow position:
               
chr10:29845244-29844787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
354-750
               

               
Cow position:
               
chr10:46196472-46196878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 228
               

               
Conread position:
               
355-781
               

               
Cow position:
               
chr10:41634822-41635248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 25
               

               
Conread position:
               
356-787
               

               
Cow position:
               
chr10:19706213-19705756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 15
               

               
Conread position:
               
358-498
               

               
Cow position:
               
chr10:126705-126843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
121, 15
               

               
Conread position:
               
358-618
               

               
Cow position:
               
chr10:53320978-53320705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
358-712
               

               
Cow position:
               
chr10:54930792-54930423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 99
               

               
Conread position:
               
358-745
               

               
Cow position:
               
chr10:28946891-28947283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 227
               

               
Conread position:
               
358-787
               

               
Cow position:
               
chr10:29631384-29630924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 278
               

               
Conread position:
               
358-787
               

               
Cow position:
               
chr10:48397686-48397247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 281
               

               
Conread position:
               
358-788
               

               
Cow position:
               
chr10:39039878-39039444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 15
               

               
Conread position:
               
358-791
               

               
Cow position:
               
chr10:38849695-38850143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 76
               

               
Conread position:
               
358-792
               

               
Cow position:
               
chr10:16478170-16478609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 18
               

               
Conread position:
               
358-794
               

               
Cow position:
               
chr10:58376888-58376422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
67, 30
               

               
Conread position:
               
362-788
               

               
Cow position:
               
chr10:57525874-57525468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
179, 19
               

               
Conread position:
               
364-601
               

               
Cow position:
               
chr10:57502229-57502480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
99, 12
               

               
Conread position:
               
366-753
               

               
Cow position:
               
chr10:21898680-21898298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 15
               

               
Conread position:
               
366-766
               

               
Cow position:
               
chr10:64221004-64220603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 71
               

               
Conread position:
               
372-689
               

               
Cow position:
               
chr10:22575717-22575392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 14
               

               
Conread position:
               
373-625
               

               
Cow position:
               
chr10:20382595-20382330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
83, 28
               

               
Conread position:
               
373-756
               

               
Cow position:
               
chr10:53485797-53485407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 218
               

               
Conread position:
               
373-787
               

               
Cow position:
               
chr10:31525185-31525599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
111, 43
               

               
Conread position:
               
375-745
               

               
Cow position:
               
chr10:68160204-68159815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
47, 11
               

               
Conread position:
               
383-788
               

               
Cow position:
               
chr10:51781972-51781571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 85
               

               
Conread position:
               
385-678
               

               
Cow position:
               
chr10:47788122-47788432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
392-788
               

               
Cow position:
               
chr10:22909014-22908596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 166
               

               
Conread position:
               
421-637
               

               
Cow position:
               
chr10:24976317-24976091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
517-787
               

               
Cow position:
               
chr10:24124461-24124192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
58, 110
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr11:1489394-1489108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
91, 71
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr11:30123090-30122772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
36, 28
               

               
Conread position:
               
1-781
               

               
Cow position:
               
chr11:49553416-49552652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
800
               

               
Alignm identity:
               
538
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 40
               

               
Conread position:
               
3-318
               

               
Cow position:
               
chr11:21890226-21889919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
67, 61
               

               
Conread position:
               
351-581
               

               
Cow position:
               
chr11:76372955-76372704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
356-699
               

               
Cow position:
               
chr11:31754987-31754643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
82, 15
               

               
Conread position:
               
358-787
               

               
Cow position:
               
chr11:26784313-26784760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 15
               

               
Conread position:
               
362-713
               

               
Cow position:
               
chr11:32685950-32686300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
62, 13
               

               
Conread position:
               
362-781
               

               
Cow position:
               
chr11:47759220-47758775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 11
               

               
Conread position:
               
366-511
               

               
Cow position:
               
chr11:21928132-21927982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
9, 125
               

               
Conread position:
               
366-752
               

               
Cow position:
               
chr11:75553932-75553544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 26
               

               
Conread position:
               
366-778
               

               
Cow position:
               
chr11:26069983-26069545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 348
               

               
Conread position:
               
366-778
               

               
Cow position:
               
chr11:35894840-35894406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 196
               

               
Conread position:
               
366-787
               

               
Cow position:
               
chr11:3856278-3856720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 410
               

               
Conread position:
               
367-778
               

               
Cow position:
               
chr11:18887902-18888316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 19
               

               
Conread position:
               
372-769
               

               
Cow position:
               
chr11:18838346-18837981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
109, 26
               

               
Conread position:
               
373-583
               

               
Cow position:
               
chr11:25865769-25865542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
373-778
               

               
Cow position:
               
chr11:4026538-4026111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 420
               

               
Conread position:
               
373-786
               

               
Cow position:
               
chr11:10056575-10057009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 63
               

               
Conread position:
               
373-786
               

               
Cow position:
               
chr11:66730156-66730596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 298
               

               
Conread position:
               
373-787
               

               
Cow position:
               
chr11:27657502-27657947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 86
               

               
Conread position:
               
373-787
               

               
Cow position:
               
chr11:35254209-35253793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 97
               

               
Conread position:
               
373-787
               

               
Cow position:
               
chr11:67154755-67155187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 48
               

               
Conread position:
               
374-719
               

               
Cow position:
               
chr11:82123154-82122812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
50, 78
               

               
Conread position:
               
374-733
               

               
Cow position:
               
chr11:50026667-50026295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 198
               

               
Conread position:
               
374-785
               

               
Cow position:
               
chr11:82147691-82147285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
88, 101
               

               
Conread position:
               
374-796
               

               
Cow position:
               
chr11:9204769-9204347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 48
               

               
Conread position:
               
375-774
               

               
Cow position:
               
chr11:37285669-37286087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
50, 28
               

               
Conread position:
               
376-787
               

               
Cow position:
               
chr11:43513551-43513119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 285
               

               
Conread position:
               
377-787
               

               
Cow position:
               
chr11:30253308-30253734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 16
               

               
Conread position:
               
381-778
               

               
Cow position:
               
chr11:46779769-46779363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 68
               

               
Conread position:
               
400-627
               

               
Cow position:
               
chr11:52808456-52808698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
22, 232
               

               
Conread position:
               
417-786
               

               
Cow position:
               
chr11:49238833-49238453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 61
               

               
Conread position:
               
450-628
               

               
Cow position:
               
chr11:5647666-5647851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
35, 91
               

               
Conread position:
               
3-256
               

               
Cow position:
               
chr12:1870343-1870595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
41, 63
               

               
Conread position:
               
293-778
               

               
Cow position:
               
chr12:35345812-35346313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 25
               

               
Conread position:
               
348-778
               

               
Cow position:
               
chr12:19870239-19870665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 33
               

               
Conread position:
               
349-741
               

               
Cow position:
               
chr12:17967144-17967554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
27, 209
               

               
Conread position:
               
358-589
               

               
Cow position:
               
chr12:20843947-20844187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
93, 18
               

               
Conread position:
               
358-745
               

               
Cow position:
               
chr12:3362284-3362686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 28
               

               
Conread position:
               
373-605
               

               
Cow position:
               
chr12:21199347-21199592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
33, 90
               

               
Conread position:
               
373-712
               

               
Cow position:
               
chr12:48471525-48471168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
373-791
               

               
Cow position:
               
chr12:29445106-29445527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 87
               

               
Conread position:
               
374-679
               

               
Cow position:
               
chr12:24977459-24977157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
74, 46
               

               
Conread position:
               
374-789
               

               
Cow position:
               
chr12:8138782-8138359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 146
               

               
Conread position:
               
376-787
               

               
Cow position:
               
chr12:32654916-32655348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 169
               

               
Conread position:
               
377-781
               

               
Cow position:
               
chr12:24433723-24433294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 87
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr13:15450303-15449995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 45
               

               
Conread position:
               
288-787
               

               
Cow position:
               
chr13:43590370-43590885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 359
               

               
Conread position:
               
328-791
               

               
Cow position:
               
chr13:60423844-60424329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 364
               

               
Conread position:
               
358-604
               

               
Cow position:
               
chr13:34908908-34908648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
106, 15
               

               
Conread position:
               
358-769
               

               
Cow position:
               
chr13:34764709-34764273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
100, 190
               

               
Conread position:
               
359-745
               

               
Cow position:
               
chr13:30278694-30279092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
26, 191
               

               
Conread position:
               
373-665
               

               
Cow position:
               
chr13:60699448-60699138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
373-717
               

               
Cow position:
               
chr13:15450003-15449645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 64
               

               
Conread position:
               
373-769
               

               
Cow position:
               
chr13:34938581-34938995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 240
               

               
Conread position:
               
373-778
               

               
Cow position:
               
chr13:33335169-33334753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 87
               

               
Conread position:
               
373-788
               

               
Cow position:
               
chr13:43981942-43981508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
375-788
               

               
Cow position:
               
chr13:42090553-42090114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
376-778
               

               
Cow position:
               
chr13:3482677-3482271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 165
               

               
Conread position:
               
377-786
               

               
Cow position:
               
chr13:50661420-50661827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
47, 214
               

               
Conread position:
               
381-743
               

               
Cow position:
               
chr13:34030752-34031126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 334
               

               
Conread position:
               
381-790
               

               
Cow position:
               
chr13:48358779-48359206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 245
               

               
Conread position:
               
381-791
               

               
Cow position:
               
chr13:34049882-34050281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 78
               

               
Conread position:
               
1-288
               

               
Cow position:
               
chr14:48825978-48826267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
36, 61
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr14:46529913-46530224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
36, 75
               

               
Conread position:
               
3-288
               

               
Cow position:
               
chr14:33677763-33678050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
34, 70
               

               
Conread position:
               
4-212
               

               
Cow position:
               
chr14:30584258-30584049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
63, 203
               

               
Conread position:
               
351-787
               

               
Cow position:
               
chr14:2295257-2295721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 266
               

               
Conread position:
               
358-613
               

               
Cow position:
               
chr14:44227373-44227652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
10, 80
               

               
Conread position:
               
358-745
               

               
Cow position:
               
chr14:45710729-45710331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 18
               

               
Conread position:
               
359-787
               

               
Cow position:
               
chr14:16342894-16342448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 68
               

               
Conread position:
               
363-791
               

               
Cow position:
               
chr14:17759884-17759444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 12
               

               
Conread position:
               
366-791
               

               
Cow position:
               
chr14:24996588-24996161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 121
               

               
Conread position:
               
367-792
               

               
Cow position:
               
chr14:46466674-46467113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 264
               

               
Conread position:
               
373-490
               

               
Cow position:
               
chr14:48402145-48402024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
86, 40
               

               
Conread position:
               
373-728
               

               
Cow position:
               
chr14:37454917-37454552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 81
               

               
Conread position:
               
373-745
               

               
Cow position:
               
chr14:11654842-11654471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
63, 18
               

               
Conread position:
               
373-782
               

               
Cow position:
               
chr14:38148011-38148436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 250
               

               
Conread position:
               
374-543
               

               
Cow position:
               
chr14:40342074-40342262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
374-689
               

               
Cow position:
               
chr14:45207298-45207631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
48, 272
               

               
Conread position:
               
374-752
               

               
Cow position:
               
chr14:20564601-20564234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
376-653
               

               
Cow position:
               
chr14:9521700-9521405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
46, 242
               

               
Conread position:
               
376-778
               

               
Cow position:
               
chr14:44775025-44774631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
84, 50
               

               
Conread position:
               
376-791
               

               
Cow position:
               
chr14:48826297-48826731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 25
               

               
Conread position:
               
377-784
               

               
Cow position:
               
chr14:47939956-47939516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 235
               

               
Conread position:
               
377-785
               

               
Cow position:
               
chr14:18417524-18417954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 404
               

               
Conread position:
               
379-766
               

               
Cow position:
               
chr14:47643311-47643716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 313
               

               
Conread position:
               
380-766
               

               
Cow position:
               
chr14:25365467-25365091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
43, 84
               

               
Conread position:
               
381-532
               

               
Cow position:
               
chr14:13322637-13322476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
82, 10
               

               
Conread position:
               
381-788
               

               
Cow position:
               
chr14:39298351-39298744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 12
               

               
Conread position:
               
469-778
               

               
Cow position:
               
chr14:41410882-41411184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 54
               

               
Conread position:
               
1-147
               

               
Cow position:
               
chr15:13391372-13391225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr15:51611042-51611277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 98
               

               
Conread position:
               
1-594
               

               
Cow position:
               
chr15:32515457-32514850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
47, 98
               

               
Conread position:
               
3-301
               

               
Cow position:
               
chr15:4915887-4916186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
34, 70
               

               
Conread position:
               
347-792
               

               
Cow position:
               
chr15:4108325-4107856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 15
               

               
Conread position:
               
351-717
               

               
Cow position:
               
chr15:580413-580792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 91
               

               
Conread position:
               
357-536
               

               
Cow position:
               
chr15:51613118-51613306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
50, 168
               

               
Conread position:
               
358-695
               

               
Cow position:
               
chr15:7551144-7551496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
12, 234
               

               
Conread position:
               
358-741
               

               
Cow position:
               
chr15:4672428-4672834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 246
               

               
Conread position:
               
358-753
               

               
Cow position:
               
chr15:11293437-11293031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 67
               

               
Conread position:
               
358-785
               

               
Cow position:
               
chr15:11626654-11627119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 201
               

               
Conread position:
               
358-786
               

               
Cow position:
               
chr15:35646680-35646233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 156
               

               
Conread position:
               
358-787
               

               
Cow position:
               
chr15:1299552-1299079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
66, 445
               

               
Conread position:
               
358-787
               

               
Cow position:
               
chr15:2077660-2078100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 15
               

               
Conread position:
               
358-787
               

               
Cow position:
               
chr15:4813598-4814041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
126, 17
               

               
Conread position:
               
358-787
               

               
Cow position:
               
chr15:18577714-18578164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 15
               

               
Conread position:
               
358-787
               

               
Cow position:
               
chr15:24794819-24795268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 80
               

               
Conread position:
               
360-792
               

               
Cow position:
               
chr15:32340336-32339898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
62, 13
               

               
Conread position:
               
363-745
               

               
Cow position:
               
chr15:35736800-35737200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 9
               

               
Conread position:
               
365-787
               

               
Cow position:
               
chr15:44302091-44301654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 42
               

               
Conread position:
               
373-627
               

               
Cow position:
               
chr15:20361079-20360806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
373-710
               

               
Cow position:
               
chr15:24718345-24718694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
373-743
               

               
Cow position:
               
chr15:17149134-17149514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 81
               

               
Conread position:
               
373-745
               

               
Cow position:
               
chr15:1765333-1765721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 64
               

               
Conread position:
               
373-785
               

               
Cow position:
               
chr15:7964934-7964489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 236
               

               
Conread position:
               
373-787
               

               
Cow position:
               
chr15:21948130-21947715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
9, 58
               

               
Conread position:
               
373-792
               

               
Cow position:
               
chr15:53339234-53339679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 321
               

               
Conread position:
               
374-792
               

               
Cow position:
               
chr15:8058981-8059424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 318
               

               
Conread position:
               
376-611
               

               
Cow position:
               
chr15:8410121-8410368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
46, 61
               

               
Conread position:
               
376-631
               

               
Cow position:
               
chr15:21964999-21965279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
376-658
               

               
Cow position:
               
chr15:1238699-1239003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
36, 66
               

               
Conread position:
               
382-670
               

               
Cow position:
               
chr15:7892329-7892017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
406-690
               

               
Cow position:
               
chr15:1830540-1830251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
19, 204
               

               
Conread position:
               
406-787
               

               
Cow position:
               
chr15:6479434-6479831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 33
               

               
Conread position:
               
418-779
               

               
Cow position:
               
chr15:9003162-9002783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 373
               

               
Conread position:
               
546-787
               

               
Cow position:
               
chr15:42860338-42860087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr16:337516-337797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
52, 33
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr16:10438602-10438930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
36, 25
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr16:26105713-26105377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
36, 45
               

               
Conread position:
               
8-162
               

               
Cow position:
               
chr16:55160823-55160669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
63, 102
               

               
Conread position:
               
29-214
               

               
Cow position:
               
chr16:10581811-10581992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
10, 17
               

               
Conread position:
               
288-745
               

               
Cow position:
               
chr16:49221314-49220855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 20
               

               
Conread position:
               
288-791
               

               
Cow position:
               
chr16:10967504-10966991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 31
               

               
Conread position:
               
298-745
               

               
Cow position:
               
chr16:34530890-34531350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 17
               

               
Conread position:
               
336-787
               

               
Cow position:
               
chr16:18618484-18618018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 12
               

               
Conread position:
               
345-744
               

               
Cow position:
               
chr16:23671345-23671770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 122
               

               
Conread position:
               
350-680
               

               
Cow position:
               
chr16:44669746-44669400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
351-778
               

               
Cow position:
               
chr16:23535246-23534801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
354-741
               

               
Cow position:
               
chr16:51403227-51402817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 24
               

               
Conread position:
               
358-628
               

               
Cow position:
               
chr16:49255575-49255287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
358-660
               

               
Cow position:
               
chr16:16520112-16519793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 203
               

               
Conread position:
               
358-787
               

               
Cow position:
               
chr16:25442285-25442738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 15
               

               
Conread position:
               
359-730
               

               
Cow position:
               
chr16:1860887-1861283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 342
               

               
Conread position:
               
362-771
               

               
Cow position:
               
chr16:32937180-32937602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
58, 11
               

               
Conread position:
               
362-787
               

               
Cow position:
               
chr16:3330597-3331038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 11
               

               
Conread position:
               
373-679
               

               
Cow position:
               
chr16:9931404-9931729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
78, 282
               

               
Conread position:
               
373-747
               

               
Cow position:
               
chr16:16270462-16270072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 60
               

               
Conread position:
               
373-753
               

               
Cow position:
               
chr16:5485397-5485795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 186
               

               
Conread position:
               
373-777
               

               
Cow position:
               
chr16:1959947-1959528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 328
               

               
Conread position:
               
373-787
               

               
Cow position:
               
chr16:8815433-8814999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 226
               

               
Conread position:
               
373-790
               

               
Cow position:
               
chr16:47474924-47475350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 6
               

               
Conread position:
               
374-793
               

               
Cow position:
               
chr16:52591006-52590572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 181
               

               
Conread position:
               
375-486
               

               
Cow position:
               
chr16:27714149-27714034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
375-720
               

               
Cow position:
               
chr16:41685576-41685220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
45, 92
               

               
Conread position:
               
376-745
               

               
Cow position:
               
chr16:41762504-41762879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 21
               

               
Conread position:
               
376-791
               

               
Cow position:
               
chr16:41572068-41572512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 191
               

               
Conread position:
               
382-757
               

               
Cow position:
               
chr16:55049215-55048835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 179
               

               
Conread position:
               
1-239
               

               
Cow position:
               
chr17:239271-239492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr17:3707855-3707545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 56
               

               
Conread position:
               
351-778
               

               
Cow position:
               
chr17:19267608-19267172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 191
               

               
Conread position:
               
355-616
               

               
Cow position:
               
chr17:18195013-18195292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
67, 18
               

               
Conread position:
               
355-751
               

               
Cow position:
               
chr17:2149655-2150031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
68, 42
               

               
Conread position:
               
358-573
               

               
Cow position:
               
chr17:33284619-33284389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
5, 193
               

               
Conread position:
               
358-787
               

               
Cow position:
               
chr17:2263370-2263822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 17
               

               
Conread position:
               
362-745
               

               
Cow position:
               
chr17:4083250-4083650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 16
               

               
Conread position:
               
373-594
               

               
Cow position:
               
chr17:31534105-31534336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
36, 169
               

               
Conread position:
               
373-778
               

               
Cow position:
               
chr17:15372466-15372877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 325
               

               
Conread position:
               
373-785
               

               
Cow position:
               
chr17:8203181-8203615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 202
               

               
Conread position:
               
373-787
               

               
Cow position:
               
chr17:16121339-16120923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
42, 214
               

               
Conread position:
               
373-787
               

               
Cow position:
               
chr17:20086523-20086093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 266
               

               
Conread position:
               
373-787
               

               
Cow position:
               
chr17:20489565-20489987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 62
               

               
Conread position:
               
373-792
               

               
Cow position:
               
chr17:6000250-5999813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 148
               

               
Conread position:
               
373-796
               

               
Cow position:
               
chr17:3707539-3707105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 61
               

               
Conread position:
               
374-592
               

               
Cow position:
               
chr17:10841998-10842239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
50, 190
               

               
Conread position:
               
374-638
               

               
Cow position:
               
chr17:38875731-38876012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
51, 90
               

               
Conread position:
               
381-575
               

               
Cow position:
               
chr17:22559219-22559423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
532-787
               

               
Cow position:
               
chr17:17067763-17068007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
355-738
               

               
Cow position:
               
chr18:35054562-35054962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 32
               

               
Conread position:
               
358-638
               

               
Cow position:
               
chr18:34044037-34044331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
18, 80
               

               
Conread position:
               
358-745
               

               
Cow position:
               
chr18:13357602-13358010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
118, 28
               

               
Conread position:
               
358-778
               

               
Cow position:
               
chr18:14131832-14132271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 15
               

               
Conread position:
               
358-787
               

               
Cow position:
               
chr18:46875906-46875478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
30, 15
               

               
Conread position:
               
358-790
               

               
Cow position:
               
chr18:37663762-37664187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 18
               

               
Conread position:
               
373-787
               

               
Cow position:
               
chr18:29238345-29238776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 65
               

               
Conread position:
               
373-787
               

               
Cow position:
               
chr18:33270369-33270790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 108
               

               
Conread position:
               
373-788
               

               
Cow position:
               
chr18:54271928-54272339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 138
               

               
Conread position:
               
374-638
               

               
Cow position:
               
chr18:37157774-37157487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
49, 249
               

               
Conread position:
               
377-649
               

               
Cow position:
               
chr18:56014040-56014324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
48, 179
               

               
Conread position:
               
419-745
               

               
Cow position:
               
chr18:32769231-32769566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 131
               

               
Conread position:
               
10-296
               

               
Cow position:
               
chr19:48861059-48860778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
83, 97
               

               
Conread position:
               
342-778
               

               
Cow position:
               
chr19:28405289-28404847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 126
               

               
Conread position:
               
354-792
               

               
Cow position:
               
chr19:23400788-23400351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 170
               

               
Conread position:
               
358-745
               

               
Cow position:
               
chr19:5249292-5248893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
67, 49
               

               
Conread position:
               
358-778
               

               
Cow position:
               
chr19:33874856-33875297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 15
               

               
Conread position:
               
358-778
               

               
Cow position:
               
chr19:40851018-40850582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 15
               

               
Conread position:
               
358-787
               

               
Cow position:
               
chr19:39391960-39392405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 15
               

               
Conread position:
               
358-792
               

               
Cow position:
               
chr19:5766283-5766728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
21, 64
               

               
Conread position:
               
362-589
               

               
Cow position:
               
chr19:50723996-50724241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
373-717
               

               
Cow position:
               
chr19:161679-161327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
87, 209
               

               
Conread position:
               
373-755
               

               
Cow position:
               
chr19:10509034-10508636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
44, 178
               

               
Conread position:
               
373-778
               

               
Cow position:
               
chr19:39667083-39666665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 388
               

               
Conread position:
               
373-786
               

               
Cow position:
               
chr19:32204730-32205151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 18
               

               
Conread position:
               
373-787
               

               
Cow position:
               
chr19:4387067-4387496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 413
               

               
Conread position:
               
376-778
               

               
Cow position:
               
chr19:28580214-28579780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 327
               

               
Conread position:
               
378-766
               

               
Cow position:
               
chr19:16128619-16129038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 243
               

               
Conread position:
               
382-615
               

               
Cow position:
               
chr19:40816045-40815791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
414-788
               

               
Cow position:
               
chr19:28367451-28367842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 40
               

               
Conread position:
               
1-147
               

               
Cow position:
               
chr2:85360239-85360090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr2:14823661-14823909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
36, 91
               

               
Conread position:
               
1-249
               

               
Cow position:
               
chr2:36029790-36029544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
71, 81
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr2:11693063-11693363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
88, 138
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr2:34473994-34473708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
37, 64
               

               
Conread position:
               
1-303
               

               
Cow position:
               
chr2:43961270-43961558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
33, 162
               

               
Conread position:
               
1-610
               

               
Cow position:
               
chr2:33795332-33794714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
634
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
36, 131
               

               
Conread position:
               
2-307
               

               
Cow position:
               
chr2:36052438-36052128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
35, 151
               

               
Conread position:
               
2-464
               

               
Cow position:
               
chr2:315518-315053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 201
               

               
Conread position:
               
3-212
               

               
Cow position:
               
chr2:4926839-4926629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
11-305
               

               
Cow position:
               
chr2:45967430-45967146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
24, 65
               

               
Conread position:
               
11-307
               

               
Cow position:
               
chr2:387193-386893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 261
               

               
Conread position:
               
288-583
               

               
Cow position:
               
chr2:63291172-63290856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
355-787
               

               
Cow position:
               
chr2:32458179-32457721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 22
               

               
Conread position:
               
358-750
               

               
Cow position:
               
chr2:56801760-56801370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
64, 210
               

               
Conread position:
               
358-753
               

               
Cow position:
               
chr2:72187620-72187197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 231
               

               
Conread position:
               
358-770
               

               
Cow position:
               
chr2:78743451-78743876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 36
               

               
Conread position:
               
358-778
               

               
Cow position:
               
chr2:24471749-24471309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
10, 266
               

               
Conread position:
               
358-788
               

               
Cow position:
               
chr2:45938809-45938363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 56
               

               
Conread position:
               
358-789
               

               
Cow position:
               
chr2:16283216-16283635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 76
               

               
Conread position:
               
358-792
               

               
Cow position:
               
chr2:47602382-47601923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
11, 245
               

               
Conread position:
               
362-680
               

               
Cow position:
               
chr2:44650146-44650475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
362-701
               

               
Cow position:
               
chr2:20872597-20872247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 11
               

               
Conread position:
               
362-730
               

               
Cow position:
               
chr2:44934099-44933714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 307
               

               
Conread position:
               
373-581
               

               
Cow position:
               
chr2:1691865-1692090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
73, 60
               

               
Conread position:
               
373-665
               

               
Cow position:
               
chr2:19225772-19226082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
52, 107
               

               
Conread position:
               
373-736
               

               
Cow position:
               
chr2:31448741-31449119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
50, 85
               

               
Conread position:
               
373-745
               

               
Cow position:
               
chr2:34052056-34052455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 286
               

               
Conread position:
               
373-752
               

               
Cow position:
               
chr2:55483251-55482861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 261
               

               
Conread position:
               
373-787
               

               
Cow position:
               
chr2:32434423-32433991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 292
               

               
Conread position:
               
373-791
               

               
Cow position:
               
chr2:72681219-72680794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 62
               

               
Conread position:
               
374-717
               

               
Cow position:
               
chr2:17823533-17823863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
376-768
               

               
Cow position:
               
chr2:11730672-11731072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
83, 44
               

               
Conread position:
               
380-779
               

               
Cow position:
               
chr2:59412786-59412388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 7
               

               
Conread position:
               
381-766
               

               
Cow position:
               
chr2:35356910-35357302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 209
               

               
Conread position:
               
381-791
               

               
Cow position:
               
chr2:85082029-85081608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 17
               

               
Conread position:
               
382-680
               

               
Cow position:
               
chr2:13481792-13481505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
29, 18
               

               
Conread position:
               
407-788
               

               
Cow position:
               
chr2:43961607-43962010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 335
               

               
Conread position:
               
412-698
               

               
Cow position:
               
chr2:12363043-12362736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
50, 8
               

               
Conread position:
               
413-575
               

               
Cow position:
               
chr2:74858118-74858287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
43, 13
               

               
Conread position:
               
547-786
               

               
Cow position:
               
chr2:24453487-24453246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
110, 17
               

               
Conread position:
               
547-786
               

               
Cow position:
               
chr2:24462007-24461766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
110, 17
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chr20:18314252-18313966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 73
               

               
Conread position:
               
300-787
               

               
Cow position:
               
chr20:9546995-9547503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 16
               

               
Conread position:
               
346-750
               

               
Cow position:
               
chr20:18967892-18968293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 11
               

               
Conread position:
               
358-574
               

               
Cow position:
               
chr20:19356170-19356398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
66, 23
               

               
Conread position:
               
358-680
               

               
Cow position:
               
chr20:21395320-21395657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 15
               

               
Conread position:
               
358-758
               

               
Cow position:
               
chr20:10853943-10853528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 93
               

               
Conread position:
               
358-792
               

               
Cow position:
               
chr20:15066866-15067308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
10, 49
               

               
Conread position:
               
359-696
               

               
Cow position:
               
chr20:871605-871262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 130
               

               
Conread position:
               
362-569
               

               
Cow position:
               
chr20:9520730-9520517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
60, 11
               

               
Conread position:
               
373-768
               

               
Cow position:
               
chr20:9344376-9344784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 60
               

               
Conread position:
               
373-778
               

               
Cow position:
               
chr20:13787460-13787885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
64, 60
               

               
Conread position:
               
376-777
               

               
Cow position:
               
chr20:5466435-5466853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 58
               

               
Conread position:
               
381-779
               

               
Cow position:
               
chr20:24615468-24615061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 44
               

               
Conread position:
               
381-784
               

               
Cow position:
               
chr20:13769283-13769693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 32
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr21:26836106-26836315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
45, 114
               

               
Conread position:
               
3-313
               

               
Cow position:
               
chr21:37149249-37149545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
90, 105
               

               
Conread position:
               
351-778
               

               
Cow position:
               
chr21:6626038-6626487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 251
               

               
Conread position:
               
353-751
               

               
Cow position:
               
chr21:43805028-43804599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
23, 318
               

               
Conread position:
               
355-787
               

               
Cow position:
               
chr21:22751914-22751477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 51
               

               
Conread position:
               
358-759
               

               
Cow position:
               
chr21:21916762-21917167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 195
               

               
Conread position:
               
358-778
               

               
Cow position:
               
chr21:13298111-13298546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 288
               

               
Conread position:
               
358-781
               

               
Cow position:
               
chr21:997324-996875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
358-787
               

               
Cow position:
               
chr21:4564979-4565429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 236
               

               
Conread position:
               
358-791
               

               
Cow position:
               
chr21:31250525-31250967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 106
               

               
Conread position:
               
359-792
               

               
Cow position:
               
chr21:42013748-42014178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
16, 167
               

               
Conread position:
               
366-787
               

               
Cow position:
               
chr21:28613849-28614282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
56, 274
               

               
Conread position:
               
369-785
               

               
Cow position:
               
chr21:34035455-34035033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 21
               

               
Conread position:
               
373-577
               

               
Cow position:
               
chr21:45783005-45783225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
89, 8
               

               
Conread position:
               
373-673
               

               
Cow position:
               
chr21:28985628-28985944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
52, 307
               

               
Conread position:
               
373-745
               

               
Cow position:
               
chr21:34655364-34655753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
373-768
               

               
Cow position:
               
chr21:27284997-27285400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 222
               

               
Conread position:
               
375-745
               

               
Cow position:
               
chr21:26849488-26849108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 254
               

               
Conread position:
               
376-778
               

               
Cow position:
               
chr21:4588468-4588059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 12
               

               
Conread position:
               
377-787
               

               
Cow position:
               
chr21:21024999-21025432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 227
               

               
Conread position:
               
379-788
               

               
Cow position:
               
chr21:30577-30998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
64, 288
               

               
Conread position:
               
393-768
               

               
Cow position:
               
chr21:38023671-38024075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
32, 194
               

               
Conread position:
               
416-625
               

               
Cow position:
               
chr21:28736779-28736991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
54, 19
               

               
Conread position:
               
498-768
               

               
Cow position:
               
chr21:3170082-3170345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
8, 21
               

               
Conread position:
               
535-791
               

               
Cow position:
               
chr21:23804137-23803882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 237
               

               
Conread position:
               
1-295
               

               
Cow position:
               
chr22:21035352-21035056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 60
               

               
Conread position:
               
10-515
               

               
Cow position:
               
chr22:3273121-3272585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 103
               

               
Conread position:
               
289-787
               

               
Cow position:
               
chr22:23800948-23800446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
29, 16
               

               
Conread position:
               
343-745
               

               
Cow position:
               
chr22:6021993-6022402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 15
               

               
Conread position:
               
351-637
               

               
Cow position:
               
chr22:45582247-45582553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
355-766
               

               
Cow position:
               
chr22:46614643-46615079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 18
               

               
Conread position:
               
358-787
               

               
Cow position:
               
chr22:1268412-1267955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 330
               

               
Conread position:
               
358-787
               

               
Cow position:
               
chr22:19142337-19141892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 15
               

               
Conread position:
               
362-750
               

               
Cow position:
               
chr22:13673461-13673067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
16, 208
               

               
Conread position:
               
362-787
               

               
Cow position:
               
chr22:5936816-5936373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 17
               

               
Conread position:
               
362-787
               

               
Cow position:
               
chr22:36270520-36270955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
8, 291
               

               
Conread position:
               
362-788
               

               
Cow position:
               
chr22:33352019-33352451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 19
               

               
Conread position:
               
373-619
               

               
Cow position:
               
chr22:45510186-45509926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
49, 64
               

               
Conread position:
               
373-696
               

               
Cow position:
               
chr22:41241581-41241929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
37, 326
               

               
Conread position:
               
373-778
               

               
Cow position:
               
chr22:13766723-13767151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
49, 262
               

               
Conread position:
               
373-778
               

               
Cow position:
               
chr22:30128943-30129366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 311
               

               
Conread position:
               
373-778
               

               
Cow position:
               
chr22:30146592-30147015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 311
               

               
Conread position:
               
373-787
               

               
Cow position:
               
chr22:15852780-15853217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 343
               

               
Conread position:
               
374-786
               

               
Cow position:
               
chr22:44518278-44517844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 13
               

               
Conread position:
               
374-788
               

               
Cow position:
               
chr22:1281376-1280936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
374-788
               

               
Cow position:
               
chr22:8664603-8664190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 47
               

               
Conread position:
               
375-742
               

               
Cow position:
               
chr22:19243756-19244123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
47, 123
               

               
Conread position:
               
381-660
               

               
Cow position:
               
chr22:12730331-12730026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
381-744
               

               
Cow position:
               
chr22:14824326-14823952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 343
               

               
Conread position:
               
381-787
               

               
Cow position:
               
chr22:11807376-11806952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 260
               

               
Conread position:
               
381-787
               

               
Cow position:
               
chr22:15352238-15352662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 271
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr23:26159679-26159413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
36, 154
               

               
Conread position:
               
1-303
               

               
Cow position:
               
chr23:15876533-15876227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 158
               

               
Conread position:
               
223-778
               

               
Cow position:
               
chr23:2440060-2439504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 7
               

               
Conread position:
               
350-630
               

               
Cow position:
               
chr23:29402385-29402095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
27, 70
               

               
Conread position:
               
356-781
               

               
Cow position:
               
chr23:1012465-1012035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 17
               

               
Conread position:
               
358-787
               

               
Cow position:
               
chr23:5873235-5872778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
358-788
               

               
Cow position:
               
chr23:17878421-17877954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 310
               

               
Conread position:
               
367-788
               

               
Cow position:
               
chr23:15876216-15875773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 14
               

               
Conread position:
               
373-685
               

               
Cow position:
               
chr23:4513836-4514170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 325
               

               
Conread position:
               
373-741
               

               
Cow position:
               
chr23:21821937-21821573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 71
               

               
Conread position:
               
373-745
               

               
Cow position:
               
chr23:16055128-16055519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 315
               

               
Conread position:
               
373-779
               

               
Cow position:
               
chr23:1022603-1022174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 229
               

               
Conread position:
               
373-794
               

               
Cow position:
               
chr23:11780136-11780579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 419
               

               
Conread position:
               
375-638
               

               
Cow position:
               
chr23:16613818-16613547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
59, 73
               

               
Conread position:
               
376-563
               

               
Cow position:
               
chr23:14777602-14777401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
91, 57
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr24:6659375-6659078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
85, 119
               

               
Conread position:
               
1-314
               

               
Cow position:
               
chr24:17409601-17409907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
91, 184
               

               
Conread position:
               
288-534
               

               
Cow position:
               
chr24:25437639-25437905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
19, 31
               

               
Conread position:
               
347-788
               

               
Cow position:
               
chr24:6130230-6130685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 33
               

               
Conread position:
               
355-778
               

               
Cow position:
               
chr24:12087623-12088073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 260
               

               
Conread position:
               
358-778
               

               
Cow position:
               
chr24:29188723-29189159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 15
               

               
Conread position:
               
358-792
               

               
Cow position:
               
chr24:42584334-42583874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 17
               

               
Conread position:
               
362-673
               

               
Cow position:
               
chr24:36723257-36723593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
63, 24
               

               
Conread position:
               
373-589
               

               
Cow position:
               
chr24:6142519-6142751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
31, 13
               

               
Conread position:
               
373-595
               

               
Cow position:
               
chr24:14305262-14305492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
52, 91
               

               
Conread position:
               
373-745
               

               
Cow position:
               
chr24:12204897-12204507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 247
               

               
Conread position:
               
373-745
               

               
Cow position:
               
chr24:12238727-12239127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 346
               

               
Conread position:
               
373-787
               

               
Cow position:
               
chr24:6353576-6354018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 202
               

               
Conread position:
               
373-787
               

               
Cow position:
               
chr24:35869127-35868706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 329
               

               
Conread position:
               
375-778
               

               
Cow position:
               
chr24:12149850-12149415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
377-750
               

               
Cow position:
               
chr24:37199455-37199075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 56
               

               
Conread position:
               
382-711
               

               
Cow position:
               
chr24:12569480-12569821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 9
               

               
Conread position:
               
391-787
               

               
Cow position:
               
chr24:13301338-13300939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
74, 55
               

               
Conread position:
               
393-739
               

               
Cow position:
               
chr24:6060898-6061240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 32
               

               
Conread position:
               
393-790
               

               
Cow position:
               
chr24:8150850-8150435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 397
               

               
Conread position:
               
490-792
               

               
Cow position:
               
chr24:1493144-1493439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
253, 164
               

               
Conread position:
               
491-768
               

               
Cow position:
               
chr24:9769629-9769905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
128, 92
               

               
Conread position:
               
16-307
               

               
Cow position:
               
chr25:13454481-13454196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 82
               

               
Conread position:
               
347-729
               

               
Cow position:
               
chr25:18486184-18485783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 321
               

               
Conread position:
               
349-569
               

               
Cow position:
               
chr25:14957074-14956840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
358-637
               

               
Cow position:
               
chr25:30266880-30267182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
358-693
               

               
Cow position:
               
chr25:17559174-17558817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
358-787
               

               
Cow position:
               
chr25:17655821-17656245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
10, 242
               

               
Conread position:
               
359-787
               

               
Cow position:
               
chr25:24216096-24215656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 294
               

               
Conread position:
               
364-616
               

               
Cow position:
               
chr25:21902431-21902706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
61, 207
               

               
Conread position:
               
373-727
               

               
Cow position:
               
chr25:18273366-18273006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 64
               

               
Conread position:
               
373-778
               

               
Cow position:
               
chr25:27523203-27522794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 200
               

               
Conread position:
               
373-781
               

               
Cow position:
               
chr25:18210748-18210327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 97
               

               
Conread position:
               
373-787
               

               
Cow position:
               
chr25:11931386-11930943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 64
               

               
Conread position:
               
374-769
               

               
Cow position:
               
chr25:18450749-18451160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 80
               

               
Conread position:
               
374-790
               

               
Cow position:
               
chr25:36636283-36635865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 64
               

               
Conread position:
               
376-540
               

               
Cow position:
               
chr25:33260083-33260249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
109, 42
               

               
Conread position:
               
383-745
               

               
Cow position:
               
chr25:11041771-11042140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 5
               

               
Conread position:
               
345-786
               

               
Cow position:
               
chr26:4603776-4603309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
18, 368
               

               
Conread position:
               
351-787
               

               
Cow position:
               
chr26:17395517-17395059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 264
               

               
Conread position:
               
358-791
               

               
Cow position:
               
chr26:6805664-6805209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 285
               

               
Conread position:
               
373-745
               

               
Cow position:
               
chr26:16478745-16479129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
49, 214
               

               
Conread position:
               
373-786
               

               
Cow position:
               
chr26:34013090-34013513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 58
               

               
Conread position:
               
374-656
               

               
Cow position:
               
chr26:1656627-1656340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
81, 44
               

               
Conread position:
               
375-732
               

               
Cow position:
               
chr26:16856683-16856304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
43, 253
               

               
Conread position:
               
375-747
               

               
Cow position:
               
chr26:20265334-20265712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 80
               

               
Conread position:
               
375-753
               

               
Cow position:
               
chr26:11036834-11037222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 62
               

               
Conread position:
               
381-729
               

               
Cow position:
               
chr26:8216849-8216495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
38, 178
               

               
Conread position:
               
386-647
               

               
Cow position:
               
chr26:34029406-34029678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 190
               

               
Conread position:
               
358-791
               

               
Cow position:
               
chr27:15274724-15274268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 271
               

               
Conread position:
               
368-787
               

               
Cow position:
               
chr27:27664354-27664791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 288
               

               
Conread position:
               
373-680
               

               
Cow position:
               
chr27:21286188-21285863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
50, 65
               

               
Conread position:
               
373-787
               

               
Cow position:
               
chr27:28079779-28080206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 87
               

               
Conread position:
               
3-401
               

               
Cow position:
               
chr28:15587177-15587569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
90, 21
               

               
Conread position:
               
16-296
               

               
Cow position:
               
chr28:11490158-11489884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 181
               

               
Conread position:
               
349-797
               

               
Cow position:
               
chr28:18100114-18099657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 9
               

               
Conread position:
               
350-787
               

               
Cow position:
               
chr28:14194172-14193730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 26
               

               
Conread position:
               
355-745
               

               
Cow position:
               
chr28:1386023-1385612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 365
               

               
Conread position:
               
355-787
               

               
Cow position:
               
chr28:7741820-7742274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 18
               

               
Conread position:
               
358-787
               

               
Cow position:
               
chr28:5938876-5939330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 15
               

               
Conread position:
               
358-787
               

               
Cow position:
               
chr28:22259762-22259314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 15
               

               
Conread position:
               
373-624
               

               
Cow position:
               
chr28:6786660-6786925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
49, 233
               

               
Conread position:
               
373-696
               

               
Cow position:
               
chr28:21566860-21567188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 91
               

               
Conread position:
               
373-737
               

               
Cow position:
               
chr28:5799693-5800080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 242
               

               
Conread position:
               
373-745
               

               
Cow position:
               
chr28:698683-699073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 267
               

               
Conread position:
               
373-787
               

               
Cow position:
               
chr28:12648272-12647852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 101
               

               
Conread position:
               
373-787
               

               
Cow position:
               
chr28:21360894-21361335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 183
               

               
Conread position:
               
373-787
               

               
Cow position:
               
chr28:24559008-24559443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 205
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr29:27262848-27262626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
32, 10
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr29:3176372-3176097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
33, 64
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr29:2747388-2747084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 68
               

               
Conread position:
               
345-791
               

               
Cow position:
               
chr29:32541439-32541904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 445
               

               
Conread position:
               
351-787
               

               
Cow position:
               
chr29:5981367-5980907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
12, 189
               

               
Conread position:
               
355-778
               

               
Cow position:
               
chr29:647160-647604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 268
               

               
Conread position:
               
358-745
               

               
Cow position:
               
chr29:36635022-36634623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 342
               

               
Conread position:
               
358-787
               

               
Cow position:
               
chr29:409896-409455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 15
               

               
Conread position:
               
358-787
               

               
Cow position:
               
chr29:32892133-32892574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 24
               

               
Conread position:
               
358-790
               

               
Cow position:
               
chr29:3176084-3175646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 22
               

               
Conread position:
               
358-792
               

               
Cow position:
               
chr29:40501646-40501199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 15
               

               
Conread position:
               
362-792
               

               
Cow position:
               
chr29:13851517-13851066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 11
               

               
Conread position:
               
373-594
               

               
Cow position:
               
chr29:38237154-38236924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
45, 112
               

               
Conread position:
               
373-653
               

               
Cow position:
               
chr29:27262348-27262043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
373-787
               

               
Cow position:
               
chr29:4633258-4632837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 264
               

               
Conread position:
               
373-789
               

               
Cow position:
               
chr29:2949005-2948566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 41
               

               
Conread position:
               
373-791
               

               
Cow position:
               
chr29:8664878-8665320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 50
               

               
Conread position:
               
376-787
               

               
Cow position:
               
chr29:30259169-30258737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 186
               

               
Conread position:
               
381-788
               

               
Cow position:
               
chr29:6213887-6214293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 56
               

               
Conread position:
               
383-702
               

               
Cow position:
               
chr29:16661384-16661715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
39, 65
               

               
Conread position:
               
469-791
               

               
Cow position:
               
chr29:13074938-13075254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
30, 73
               

               
Conread position:
               
1-200
               

               
Cow position:
               
chr3:11198586-11198388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
92, 134
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr3:19945206-19945441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr3:19720718-19720379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
3-257
               

               
Cow position:
               
chr3:63200573-63200823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 84
               

               
Conread position:
               
10-307
               

               
Cow position:
               
chr3:37625968-37626255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
81, 125
               

               
Conread position:
               
351-745
               

               
Cow position:
               
chr3:2854187-2853782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
17, 260
               

               
Conread position:
               
351-768
               

               
Cow position:
               
chr3:15054440-15054006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 112
               

               
Conread position:
               
351-787
               

               
Cow position:
               
chr3:47087555-47087995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 142
               

               
Conread position:
               
354-786
               

               
Cow position:
               
chr3:84197078-84197553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
15, 262
               

               
Conread position:
               
355-769
               

               
Cow position:
               
chr3:4736638-4736226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 26
               

               
Conread position:
               
358-709
               

               
Cow position:
               
chr3:18354742-18354393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 112
               

               
Conread position:
               
358-738
               

               
Cow position:
               
chr3:31416286-31416686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
358-745
               

               
Cow position:
               
chr3:6876908-6876511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 76
               

               
Conread position:
               
358-751
               

               
Cow position:
               
chr3:19720395-19719974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
358-754
               

               
Cow position:
               
chr3:63255409-63255807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
103, 43
               

               
Conread position:
               
358-778
               

               
Cow position:
               
chr3:2709599-2709157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 15
               

               
Conread position:
               
358-787
               

               
Cow position:
               
chr3:38494508-38494962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 195
               

               
Conread position:
               
358-787
               

               
Cow position:
               
chr3:74851862-74851426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 111
               

               
Conread position:
               
358-791
               

               
Cow position:
               
chr3:24354425-24354874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 28
               

               
Conread position:
               
358-792
               

               
Cow position:
               
chr3:29579896-29580347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 113
               

               
Conread position:
               
358-792
               

               
Cow position:
               
chr3:32200292-32200743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 12
               

               
Conread position:
               
362-626
               

               
Cow position:
               
chr3:63002290-63002004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
363-736
               

               
Cow position:
               
chr3:67164551-67164954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
370-625
               

               
Cow position:
               
chr3:73302548-73302818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
373-637
               

               
Cow position:
               
chr3:51938817-51938535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
373-787
               

               
Cow position:
               
chr3:19889351-19888938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 72
               

               
Conread position:
               
373-791
               

               
Cow position:
               
chr3:27864459-27864899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 321
               

               
Conread position:
               
373-792
               

               
Cow position:
               
chr3:72671246-72670828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
86, 58
               

               
Conread position:
               
374-635
               

               
Cow position:
               
chr3:13476664-13476933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
109, 76
               

               
Conread position:
               
374-768
               

               
Cow position:
               
chr3:24644507-24644916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 63
               

               
Conread position:
               
374-778
               

               
Cow position:
               
chr3:54772255-54772672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 159
               

               
Conread position:
               
374-787
               

               
Cow position:
               
chr3:34506061-34505630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 414
               

               
Conread position:
               
375-737
               

               
Cow position:
               
chr3:77424891-77425260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
50, 22
               

               
Conread position:
               
376-514
               

               
Cow position:
               
chr3:56398471-56398620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
378-720
               

               
Cow position:
               
chr3:53412416-53412783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
44, 208
               

               
Conread position:
               
501-785
               

               
Cow position:
               
chr3:37656793-37657077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
16, 49
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr4:27300714-27300448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
36, 59
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr4:9847444-9847120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
36, 64
               

               
Conread position:
               
10-318
               

               
Cow position:
               
chr4:967301-966983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
335-787
               

               
Cow position:
               
chr4:19094034-19094499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 56
               

               
Conread position:
               
349-787
               

               
Cow position:
               
chr4:14819835-14819378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 211
               

               
Conread position:
               
358-778
               

               
Cow position:
               
chr4:36897451-36897889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 15
               

               
Conread position:
               
358-787
               

               
Cow position:
               
chr4:5881235-5881681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 28
               

               
Conread position:
               
358-791
               

               
Cow position:
               
chr4:52963062-52962608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 91
               

               
Conread position:
               
358-797
               

               
Cow position:
               
chr4:34178167-34177720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 261
               

               
Conread position:
               
362-597
               

               
Cow position:
               
chr4:69521596-69521851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
6, 199
               

               
Conread position:
               
362-778
               

               
Cow position:
               
chr4:26876703-26876273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 215
               

               
Conread position:
               
364-769
               

               
Cow position:
               
chr4:22474427-22474827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
42, 150
               

               
Conread position:
               
366-569
               

               
Cow position:
               
chr4:493540-493331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
56, 83
               

               
Conread position:
               
369-544
               

               
Cow position:
               
chr4:25735549-25735737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
13, 169
               

               
Conread position:
               
372-787
               

               
Cow position:
               
chr4:50975713-50976141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
53, 180
               

               
Conread position:
               
373-645
               

               
Cow position:
               
chr4:51042200-51041913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
34, 185
               

               
Conread position:
               
373-689
               

               
Cow position:
               
chr4:20067634-20067303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
373-778
               

               
Cow position:
               
chr4:33071736-33071323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
82, 40
               

               
Conread position:
               
373-791
               

               
Cow position:
               
chr4:19005228-19004799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 98
               

               
Conread position:
               
374-587
               

               
Cow position:
               
chr4:39268068-39267844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
46, 104
               

               
Conread position:
               
374-716
               

               
Cow position:
               
chr4:63427936-63427585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 272
               

               
Conread position:
               
374-787
               

               
Cow position:
               
chr4:13958263-13958693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 289
               

               
Conread position:
               
374-787
               

               
Cow position:
               
chr4:21359318-21359758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 90
               

               
Conread position:
               
374-792
               

               
Cow position:
               
chr4:31638838-31638399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 199
               

               
Conread position:
               
375-787
               

               
Cow position:
               
chr4:49716871-49717303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 38
               

               
Conread position:
               
376-778
               

               
Cow position:
               
chr4:60263069-60262654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 82
               

               
Conread position:
               
392-638
               

               
Cow position:
               
chr4:54969820-54970079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
33, 142
               

               
Conread position:
               
419-691
               

               
Cow position:
               
chr4:64216536-64216262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
63, 41
               

               
Conread position:
               
421-769
               

               
Cow position:
               
chr4:28832857-28833222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 261
               

               
Conread position:
               
424-615
               

               
Cow position:
               
chr4:10855641-10855441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
31, 19
               

               
Conread position:
               
451-778
               

               
Cow position:
               
chr4:12459382-12459061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
116, 56
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr5:27654681-27654955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
92, 53
               

               
Conread position:
               
1-311
               

               
Cow position:
               
chr5:45701181-45701498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 74
               

               
Conread position:
               
10-307
               

               
Cow position:
               
chr5:48137466-48137172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
55, 68
               

               
Conread position:
               
10-316
               

               
Cow position:
               
chr5:24107808-24107499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 259
               

               
Conread position:
               
355-638
               

               
Cow position:
               
chr5:33187865-33188139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
36, 18
               

               
Conread position:
               
358-606
               

               
Cow position:
               
chr5:51308678-51308423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
115, 15
               

               
Conread position:
               
358-745
               

               
Cow position:
               
chr5:10855643-10855235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 15
               

               
Conread position:
               
358-745
               

               
Cow position:
               
chr5:24099835-24100232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 15
               

               
Conread position:
               
358-777
               

               
Cow position:
               
chr5:13046829-13047256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 135
               

               
Conread position:
               
358-787
               

               
Cow position:
               
chr5:11115578-11115148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 18
               

               
Conread position:
               
358-787
               

               
Cow position:
               
chr5:45701486-45701946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 80
               

               
Conread position:
               
358-787
               

               
Cow position:
               
chr5:59061812-59062265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 29
               

               
Conread position:
               
358-791
               

               
Cow position:
               
chr5:54620223-54620673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 23
               

               
Conread position:
               
358-792
               

               
Cow position:
               
chr5:7275013-7275462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 283
               

               
Conread position:
               
358-794
               

               
Cow position:
               
chr5:28242205-28242648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 217
               

               
Conread position:
               
358-797
               

               
Cow position:
               
chr5:41527621-41527162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 314
               

               
Conread position:
               
364-787
               

               
Cow position:
               
chr5:14784190-14783756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 288
               

               
Conread position:
               
373-700
               

               
Cow position:
               
chr5:52434929-52435273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 191
               

               
Conread position:
               
373-769
               

               
Cow position:
               
chr5:23686711-23686316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 83
               

               
Conread position:
               
373-787
               

               
Cow position:
               
chr5:29434541-29434140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
121, 54
               

               
Conread position:
               
373-787
               

               
Cow position:
               
chr5:40923459-40923048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 92
               

               
Conread position:
               
373-787
               

               
Cow position:
               
chr5:47893356-47892938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 86
               

               
Conread position:
               
373-787
               

               
Cow position:
               
chr5:49757516-49757082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 63
               

               
Conread position:
               
373-788
               

               
Cow position:
               
chr5:7142876-7142444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 239
               

               
Conread position:
               
374-578
               

               
Cow position:
               
chr5:58549183-58549385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
25, 46
               

               
Conread position:
               
374-769
               

               
Cow position:
               
chr5:3822155-3822543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
46, 198
               

               
Conread position:
               
374-791
               

               
Cow position:
               
chr5:18549356-18549776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 157
               

               
Conread position:
               
375-792
               

               
Cow position:
               
chr5:35527129-35527557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 79
               

               
Conread position:
               
375-793
               

               
Cow position:
               
chr5:24151964-24152416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
92, 47
               

               
Conread position:
               
376-603
               

               
Cow position:
               
chr5:41960555-41960306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
44, 238
               

               
Conread position:
               
381-787
               

               
Cow position:
               
chr5:29767319-29767723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
41, 121
               

               
Conread position:
               
383-745
               

               
Cow position:
               
chr5:73455455-73455817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
18, 178
               

               
Conread position:
               
386-791
               

               
Cow position:
               
chr5:23755261-23754853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 57
               

               
Conread position:
               
391-750
               

               
Cow position:
               
chr5:41956209-41955843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 247
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr6:13316453-13316161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
36, 72
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr6:58065744-58066056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
92, 205
               

               
Conread position:
               
11-307
               

               
Cow position:
               
chr6:10632571-10632864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
23, 163
               

               
Conread position:
               
288-787
               

               
Cow position:
               
chr6:58065967-58066482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 19
               

               
Conread position:
               
355-792
               

               
Cow position:
               
chr6:10610170-10610616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
80, 26
               

               
Conread position:
               
358-637
               

               
Cow position:
               
chr6:33898945-33898665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
11, 24
               

               
Conread position:
               
358-741
               

               
Cow position:
               
chr6:20559788-20559405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 15
               

               
Conread position:
               
358-745
               

               
Cow position:
               
chr6:10679741-10680132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 18
               

               
Conread position:
               
358-778
               

               
Cow position:
               
chr6:35875393-35874957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 15
               

               
Conread position:
               
358-786
               

               
Cow position:
               
chr6:15478493-15478936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 18
               

               
Conread position:
               
358-787
               

               
Cow position:
               
chr6:59617425-59617847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 15
               

               
Conread position:
               
358-788
               

               
Cow position:
               
chr6:39955163-39955611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 219
               

               
Conread position:
               
358-792
               

               
Cow position:
               
chr6:15966498-15966042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 34
               

               
Conread position:
               
359-601
               

               
Cow position:
               
chr6:40992-40723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
362-628
               

               
Cow position:
               
chr6:28134223-28134512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
362-787
               

               
Cow position:
               
chr6:42441697-42442138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 92
               

               
Conread position:
               
364-787
               

               
Cow position:
               
chr6:66546805-66547239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 12
               

               
Conread position:
               
373-697
               

               
Cow position:
               
chr6:58460993-58460649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
373-745
               

               
Cow position:
               
chr6:58601807-58602200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 323
               

               
Conread position:
               
373-750
               

               
Cow position:
               
chr6:10645051-10645445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
90, 28
               

               
Conread position:
               
373-787
               

               
Cow position:
               
chr6:3487099-3486658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 237
               

               
Conread position:
               
373-787
               

               
Cow position:
               
chr6:3571920-3572361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
373-787
               

               
Cow position:
               
chr6:7177962-7177527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 319
               

               
Conread position:
               
374-587
               

               
Cow position:
               
chr6:24534013-24534248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
374-681
               

               
Cow position:
               
chr6:32072415-32072105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
116, 47
               

               
Conread position:
               
374-787
               

               
Cow position:
               
chr6:1382001-1381578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 17
               

               
Conread position:
               
378-787
               

               
Cow position:
               
chr6:9843251-9843670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
45, 242
               

               
Conread position:
               
403-791
               

               
Cow position:
               
chr6:10339277-10338875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
23, 223
               

               
Conread position:
               
425-794
               

               
Cow position:
               
chr6:6158100-6158465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 212
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr7:1403362-1403069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
290, 97
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr7:59138742-59139055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
59, 72
               

               
Conread position:
               
2-255
               

               
Cow position:
               
chr7:49723223-49722969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
25, 41
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chr7:27583625-27583335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 235
               

               
Conread position:
               
3-307
               

               
Cow position:
               
chr7:20533049-20533356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
10-788
               

               
Cow position:
               
chr7:30118432-30117633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
806
               

               
Alignm identity:
               
511
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 74
               

               
Conread position:
               
285-654
               

               
Cow position:
               
chr7:57563783-57563385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 163
               

               
Conread position:
               
286-768
               

               
Cow position:
               
chr7:64350817-64351325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 268
               

               
Conread position:
               
332-787
               

               
Cow position:
               
chr7:67490064-67490537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 239
               

               
Conread position:
               
349-787
               

               
Cow position:
               
chr7:67429961-67430413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 338
               

               
Conread position:
               
350-652
               

               
Cow position:
               
chr7:5249078-5248762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
92, 205
               

               
Conread position:
               
352-788
               

               
Cow position:
               
chr7:29471872-29472316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 18
               

               
Conread position:
               
355-716
               

               
Cow position:
               
chr7:59139023-59139393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 26
               

               
Conread position:
               
358-738
               

               
Cow position:
               
chr7:33332962-33333367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
358-742
               

               
Cow position:
               
chr7:13575696-13576093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
25, 133
               

               
Conread position:
               
358-750
               

               
Cow position:
               
chr7:59680249-59680663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 23
               

               
Conread position:
               
358-755
               

               
Cow position:
               
chr7:25094002-25093596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
7, 20
               

               
Conread position:
               
358-779
               

               
Cow position:
               
chr7:14213965-14213539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
95, 15
               

               
Conread position:
               
358-787
               

               
Cow position:
               
chr7:33311544-33311091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 28
               

               
Conread position:
               
358-787
               

               
Cow position:
               
chr7:42871546-42872000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
358-787
               

               
Cow position:
               
chr7:65872205-65871760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
64, 15
               

               
Conread position:
               
358-791
               

               
Cow position:
               
chr7:39097145-39096682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 144
               

               
Conread position:
               
359-666
               

               
Cow position:
               
chr7:1403086-1402760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 197
               

               
Conread position:
               
363-787
               

               
Cow position:
               
chr7:59685217-59685667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 434
               

               
Conread position:
               
368-787
               

               
Cow position:
               
chr7:3156883-3157329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 332
               

               
Conread position:
               
369-787
               

               
Cow position:
               
chr7:66070713-66070273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 17
               

               
Conread position:
               
373-572
               

               
Cow position:
               
chr7:58350575-58350360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
33, 93
               

               
Conread position:
               
373-631
               

               
Cow position:
               
chr7:60856639-60856375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
100, 214
               

               
Conread position:
               
373-721
               

               
Cow position:
               
chr7:18445337-18444970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 282
               

               
Conread position:
               
373-738
               

               
Cow position:
               
chr7:58994990-58995365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 90
               

               
Conread position:
               
373-745
               

               
Cow position:
               
chr7:49828917-49828525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 290
               

               
Conread position:
               
373-745
               

               
Cow position:
               
chr7:67813913-67814285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
50, 133
               

               
Conread position:
               
373-751
               

               
Cow position:
               
chr7:53408003-53408386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 198
               

               
Conread position:
               
373-769
               

               
Cow position:
               
chr7:24934137-24933719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 283
               

               
Conread position:
               
373-781
               

               
Cow position:
               
chr7:21311867-21312291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
50, 209
               

               
Conread position:
               
373-786
               

               
Cow position:
               
chr7:25433797-25434237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
49, 239
               

               
Conread position:
               
373-788
               

               
Cow position:
               
chr7:51015675-51016099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 94
               

               
Conread position:
               
374-787
               

               
Cow position:
               
chr7:20824743-20825159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
44, 165
               

               
Conread position:
               
382-679
               

               
Cow position:
               
chr7:996171-996483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
40, 246
               

               
Conread position:
               
382-750
               

               
Cow position:
               
chr7:33760447-33760818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
43, 86
               

               
Conread position:
               
384-787
               

               
Cow position:
               
chr7:21852420-21852000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
20, 183
               

               
Conread position:
               
419-716
               

               
Cow position:
               
chr7:24867780-24867470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
60, 188
               

               
Conread position:
               
490-788
               

               
Cow position:
               
chr7:20533518-20533813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
124, 132
               

               
Conread position:
               
1-303
               

               
Cow position:
               
chr8:46948998-46949313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
2-312
               

               
Cow position:
               
chr8:15409071-15409394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
35, 117
               

               
Conread position:
               
347-792
               

               
Cow position:
               
chr8:9539127-9538670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 323
               

               
Conread position:
               
349-768
               

               
Cow position:
               
chr8:29008210-29008639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 24
               

               
Conread position:
               
355-665
               

               
Cow position:
               
chr8:21205156-21205478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
20, 70
               

               
Conread position:
               
358-628
               

               
Cow position:
               
chr8:28878601-28878890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
11, 44
               

               
Conread position:
               
358-738
               

               
Cow position:
               
chr8:5017775-5018168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 15
               

               
Conread position:
               
358-745
               

               
Cow position:
               
chr8:14927290-14926886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 15
               

               
Conread position:
               
358-787
               

               
Cow position:
               
chr8:23772234-23772676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 15
               

               
Conread position:
               
359-788
               

               
Cow position:
               
chr8:48787953-48788394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 289
               

               
Conread position:
               
373-574
               

               
Cow position:
               
chr8:39591650-39591429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
373-577
               

               
Cow position:
               
chr8:32648111-32648323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
49, 108
               

               
Conread position:
               
373-599
               

               
Cow position:
               
chr8:42578981-42578738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
85, 14
               

               
Conread position:
               
373-623
               

               
Cow position:
               
chr8:9963905-9963644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 157
               

               
Conread position:
               
373-631
               

               
Cow position:
               
chr8:4305654-4305926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
90, 199
               

               
Conread position:
               
373-745
               

               
Cow position:
               
chr8:58184991-58184619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 140
               

               
Conread position:
               
373-749
               

               
Cow position:
               
chr8:7399493-7399116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 79
               

               
Conread position:
               
373-750
               

               
Cow position:
               
chr8:11565358-11565750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
373-787
               

               
Cow position:
               
chr8:44700595-44701025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 52
               

               
Conread position:
               
373-791
               

               
Cow position:
               
chr8:47674448-47674881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 64
               

               
Conread position:
               
374-638
               

               
Cow position:
               
chr8:20278495-20278756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
48, 94
               

               
Conread position:
               
374-687
               

               
Cow position:
               
chr8:45691406-45691083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 12
               

               
Conread position:
               
374-744
               

               
Cow position:
               
chr8:50960006-50959617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 63
               

               
Conread position:
               
374-775
               

               
Cow position:
               
chr8:47075765-47076194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
86, 204
               

               
Conread position:
               
374-787
               

               
Cow position:
               
chr8:8516993-8516555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 421
               

               
Conread position:
               
376-687
               

               
Cow position:
               
chr8:46454196-46453892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
49, 65
               

               
Conread position:
               
376-694
               

               
Cow position:
               
chr8:8309843-8310157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
92, 45
               

               
Conread position:
               
377-781
               

               
Cow position:
               
chr8:42469274-42469707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
78, 153
               

               
Conread position:
               
378-788
               

               
Cow position:
               
chr8:34660268-34660696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 23
               

               
Conread position:
               
381-733
               

               
Cow position:
               
chr8:75974-75618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 49
               

               
Conread position:
               
381-786
               

               
Cow position:
               
chr8:51857581-51858018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
41, 344
               

               
Conread position:
               
469-740
               

               
Cow position:
               
chr8:30413287-30413558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
36, 9
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr9:39731123-39730853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
60, 118
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr9:2498042-2497739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
33, 144
               

               
Conread position:
               
1-324
               

               
Cow position:
               
chr9:3963193-3962866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 63
               

               
Conread position:
               
2-296
               

               
Cow position:
               
chr9:2212075-2212373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
35, 54
               

               
Conread position:
               
2-318
               

               
Cow position:
               
chr9:6977268-6977587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
35, 41
               

               
Conread position:
               
3-311
               

               
Cow position:
               
chr9:1981212-1981519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 69
               

               
Conread position:
               
9-302
               

               
Cow position:
               
chr9:29329580-29329876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
26, 37
               

               
Conread position:
               
354-705
               

               
Cow position:
               
chr9:3224408-3224028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
357-576
               

               
Cow position:
               
chr9:26553807-26554038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
68, 107
               

               
Conread position:
               
357-589
               

               
Cow position:
               
chr9:49303424-49303183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
358-627
               

               
Cow position:
               
chr9:1981509-1981792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
94, 14
               

               
Conread position:
               
358-640
               

               
Cow position:
               
chr9:62736553-62736264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
64, 14
               

               
Conread position:
               
358-649
               

               
Cow position:
               
chr9:10937836-10938146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
67, 15
               

               
Conread position:
               
358-778
               

               
Cow position:
               
chr9:27783432-27783871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 15
               

               
Conread position:
               
358-781
               

               
Cow position:
               
chr9:827864-827421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 15
               

               
Conread position:
               
358-787
               

               
Cow position:
               
chr9:1995145-1994711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 15
               

               
Conread position:
               
358-787
               

               
Cow position:
               
chr9:8402616-8403049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 14
               

               
Conread position:
               
362-788
               

               
Cow position:
               
chr9:3936200-3935777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 316
               

               
Conread position:
               
372-787
               

               
Cow position:
               
chr9:60462671-60462243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 218
               

               
Conread position:
               
373-589
               

               
Cow position:
               
chr9:59481542-59481315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
51, 184
               

               
Conread position:
               
373-745
               

               
Cow position:
               
chr9:59428261-59428648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 185
               

               
Conread position:
               
373-751
               

               
Cow position:
               
chr9:25923709-25923341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
267, 8
               

               
Conread position:
               
373-778
               

               
Cow position:
               
chr9:12183165-12182737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 60
               

               
Conread position:
               
373-787
               

               
Cow position:
               
chr9:26102006-26101574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 182
               

               
Conread position:
               
374-749
               

               
Cow position:
               
chr9:25188353-25188742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 73
               

               
Conread position:
               
375-682
               

               
Cow position:
               
chr9:47545457-47545780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
48, 244
               

               
Conread position:
               
375-745
               

               
Cow position:
               
chr9:26567860-26568245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 26
               

               
Conread position:
               
375-749
               

               
Cow position:
               
chr9:4717433-4717823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 334
               

               
Conread position:
               
375-768
               

               
Cow position:
               
chr9:44819401-44819810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 227
               

               
Conread position:
               
376-589
               

               
Cow position:
               
chr9:12725249-12725476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
46, 196
               

               
Conread position:
               
376-787
               

               
Cow position:
               
chr9:5141959-5142390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 284
               

               
Conread position:
               
378-768
               

               
Cow position:
               
chr9:30488861-30489261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
84, 35
               

               
Conread position:
               
381-791
               

               
Cow position:
               
chr9:4666434-4666868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 305
               

               
Conread position:
               
382-745
               

               
Cow position:
               
chr9:13474509-13474120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
40, 252
               

               
Conread position:
               
382-778
               

               
Cow position:
               
chr9:19158270-19157843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 420
               

               
Conread position:
               
392-791
               

               
Cow position:
               
chr9:54925812-54926230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 205
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chrX:41102624-41102335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 61
               

               
Conread position:
               
2-295
               

               
Cow position:
               
chrX:4411491-4411784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
32, 41
               

               
Conread position:
               
3-307
               

               
Cow position:
               
chrX:4752783-4752471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
35, 303
               

               
Conread position:
               
11-389
               

               
Cow position:
               
chrX:10416602-10416224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
59, 229
               

               
Conread position:
               
14-307
               

               
Cow position:
               
chrX:27993613-27993311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
23, 61
               

               
Conread position:
               
228-792
               

               
Cow position:
               
chrX:12183966-12184547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 14
               

               
Conread position:
               
288-745
               

               
Cow position:
               
chrX:27961921-27962387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 189
               

               
Conread position:
               
354-652
               

               
Cow position:
               
chrX:15486638-15486333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
15, 243
               

               
Conread position:
               
355-792
               

               
Cow position:
               
chrX:24134124-24133688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 127
               

               
Conread position:
               
358-679
               

               
Cow position:
               
chrX:29097347-29097687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 15
               

               
Conread position:
               
358-694
               

               
Cow position:
               
chrX:29792885-29792528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
10, 301
               

               
Conread position:
               
358-745
               

               
Cow position:
               
chrX:15126078-15125676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 15
               

               
Conread position:
               
358-768
               

               
Cow position:
               
chrX:5651507-5651094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 80
               

               
Conread position:
               
358-778
               

               
Cow position:
               
chrX:16700846-16701284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 15
               

               
Conread position:
               
358-778
               

               
Cow position:
               
chrX:32123206-32123648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 27
               

               
Conread position:
               
358-787
               

               
Cow position:
               
chrX:3467496-3467044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 28
               

               
Conread position:
               
358-787
               

               
Cow position:
               
chrX:21268902-21268459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 264
               

               
Conread position:
               
358-791
               

               
Cow position:
               
chrX:19875655-19876122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 447
               

               
Conread position:
               
358-792
               

               
Cow position:
               
chrX:38148745-38149198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 221
               

               
Conread position:
               
362-744
               

               
Cow position:
               
chrX:3580184-3580589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 14
               

               
Conread position:
               
362-787
               

               
Cow position:
               
chrX:16037283-16036845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
55, 42
               

               
Conread position:
               
362-787
               

               
Cow position:
               
chrX:20798460-20798900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 254
               

               
Conread position:
               
364-792
               

               
Cow position:
               
chrX:28868088-28867633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 49
               

               
Conread position:
               
365-741
               

               
Cow position:
               
chrX:2144124-2144522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 210
               

               
Conread position:
               
372-682
               

               
Cow position:
               
chrX:24476040-24475713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
45, 255
               

               
Conread position:
               
373-613
               

               
Cow position:
               
chrX:21059927-21060191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
6, 15
               

               
Conread position:
               
373-653
               

               
Cow position:
               
chrX:21590150-21590445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
69, 60
               

               
Conread position:
               
373-662
               

               
Cow position:
               
chrX:34219464-34219768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
87, 207
               

               
Conread position:
               
373-665
               

               
Cow position:
               
chrX:30130574-30130276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
51, 220
               

               
Conread position:
               
373-687
               

               
Cow position:
               
chrX:12314596-12314266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 49
               

               
Conread position:
               
373-741
               

               
Cow position:
               
chrX:13054996-13055373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 58
               

               
Conread position:
               
373-745
               

               
Cow position:
               
chrX:16780450-16780839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 60
               

               
Conread position:
               
373-745
               

               
Cow position:
               
chrX:39694810-39695197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 321
               

               
Conread position:
               
373-787
               

               
Cow position:
               
chrX:6013797-6013370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 18
               

               
Conread position:
               
373-787
               

               
Cow position:
               
chrX:18535580-18536002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 157
               

               
Conread position:
               
373-787
               

               
Cow position:
               
chrX:29886154-29886591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
51, 273
               

               
Conread position:
               
373-787
               

               
Cow position:
               
chrX:36136403-36135971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 64
               

               
Conread position:
               
373-788
               

               
Cow position:
               
chrX:21643740-21643312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 163
               

               
Conread position:
               
374-792
               

               
Cow position:
               
chrX:41850049-41849617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 278
               

               
Conread position:
               
375-626
               

               
Cow position:
               
chrX:13081846-13081590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
47, 102
               

               
Conread position:
               
376-626
               

               
Cow position:
               
chrX:46235911-46236181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
376-778
               

               
Cow position:
               
chrX:23212863-23212454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 200
               

               
Conread position:
               
376-787
               

               
Cow position:
               
chrX:17666628-17666195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 202
               

               
Conread position:
               
380-628
               

               
Cow position:
               
chrX:30061911-30061659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
39, 116
               

               
Conread position:
               
381-781
               

               
Cow position:
               
chrX:30365628-30365206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 117
               

               
Conread position:
               
381-787
               

               
Cow position:
               
chrX:30070841-30071271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
401-637
               

               
Cow position:
               
chrX:6198008-6197760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
21, 153
               

               
Conread position:
               
406-791
               

               
Cow position:
               
chrX:18768272-18768644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
98, 158