Cow genome map
| Conread name: | Ss1.1-Lng1-LNG010001H05.5.5 |
| Conread position: | 421-671 |
| Cow position: | chr20:36655627-36655873 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 116-388 |
| Cow position: | chr23:23096967-23096696 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 121-388 |
| Cow position: | chr23:20551142-20551409 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 121-388 |
| Cow position: | chr23:21180741-21180474 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 121-388 |
| Cow position: | chr23:23022929-23022662 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 190 |
| Conread position: | 121-388 |
| Cow position: | chr23:23049471-23049204 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 211 |
| Conread position: | 122-383 |
| Cow position: | chr23:23177852-23177592 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 198, 212 |
| Conread position: | 379-663 |
| Cow position: | chr23:21180287-21180003 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 379-663 |
| Cow position: | chr23:23022459-23022176 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 379-663 |
| Cow position: | chr23:23049041-23048757 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 379-663 |
| Cow position: | chr23:23096509-23096228 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 30 |
| Conread position: | 380-663 |
| Cow position: | chr23:20551600-20551882 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 380-663 |
| Cow position: | chr23:23177323-23177038 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 157 |
| Conread position: | 446-663 |
| Cow position: | chr23:24589535-24589754 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 43, 67 |
| Conread position: | 661-831 |
| Cow position: | chr23:23176142-23175972 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 145 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 661-938 |
| Cow position: | chr23:23048188-23047911 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 661-939 |
| Cow position: | chr23:20553184-20553462 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 661-939 |
| Cow position: | chr23:21000454-21000732 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 661-939 |
| Cow position: | chr23:21179119-21178841 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 661-939 |
| Cow position: | chr23:23021253-23020975 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 661-939 |
| Cow position: | chr23:23093772-23093494 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 662-939 |
| Cow position: | chr23:24591581-24591855 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 721-928 |
| Cow position: | chr23:24252946-24252736 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 939-1064 |
| Cow position: | chr23:20553571-20553700 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 939-1064 |
| Cow position: | chr23:23020859-23020734 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 115, 47 |
| Conread position: | 939-1065 |
| Cow position: | chr23:23175802-23175682 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 115, 66 |
| Conread position: | 939-1066 |
| Cow position: | chr23:21178724-21178599 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 115, 55 |
| Conread position: | 939-1066 |
| Cow position: | chr23:23047794-23047665 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 939-1066 |
| Cow position: | chr23:23093378-23093250 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 939-1069 |
| Cow position: | chr23:24591966-24592091 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 115, 68 |
| Conread position: | 1133-1332 |
| Cow position: | chr23:20554526-20554727 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 46, 78 |
| Conread position: | 1133-1359 |
| Cow position: | chr23:21177812-21177581 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 157, 34 |
| Conread position: | 1133-1359 |
| Cow position: | chr23:23092455-23092240 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1133-1371 |
| Cow position: | chr23:24592887-24593114 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 186 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 228, 38 |
| Conread position: | 1401-1864 |
| Cow position: | chr23:21177571-21177068 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 350 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 33, 121 |
| Conread position: | 1401-1944 |
| Cow position: | chr23:24593111-24593671 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 49 |
| Conread position: | 1466-1837 |
| Cow position: | chr23:23092043-23091655 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 44 |
| Conread position: | 1478-1799 |
| Cow position: | chr23:21002156-21002488 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 35, 200 |
| Conread position: | 450-663 |
| Cow position: | chr3:62244562-62244348 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 661-939 |
| Cow position: | chr3:62210835-62210558 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 662-939 |
| Cow position: | chr3:62243731-62243454 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 660-939 |
| Cow position: | chr7:27038193-27037914 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 55, 36 |