Cow genome map
| Conread name: | Ss1.1-Lng1-LNG010013F05.5 |
| Conread position: | 2195-2576 |
| Cow position: | chr1:54458000-54458377 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 2195-2606 |
| Cow position: | chr11:1692348-1692759 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2195-2606 |
| Cow position: | chr11:44642993-44643399 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 190 |
| Conread position: | 2196-2606 |
| Cow position: | chr12:1638000-1637590 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2196-2606 |
| Cow position: | chr12:1660475-1660885 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2196-2606 |
| Cow position: | chr12:1670573-1670983 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1038-1406 |
| Cow position: | chr14:9971724-9971357 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 63 |
| Conread position: | 1395-1714 |
| Cow position: | chr14:9971087-9970768 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 128 |
| Conread position: | 1725-2720 |
| Cow position: | chr14:9970776-9969783 (view UCSC Genome Browser custom track) |
| Alignm length: | 998 |
| Alignm identity: | 913 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 401, 101 |
| Conread position: | 1794-2149 |
| Cow position: | chr16:42429904-42429554 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 262 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 72, 176 |
| Conread position: | 2195-2326 |
| Cow position: | chr16:17451093-17450962 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2324-2483 |
| Cow position: | chr16:17446497-17446338 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2478-2606 |
| Cow position: | chr16:17445192-17445064 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2195-2606 |
| Cow position: | chr18:56466418-56466829 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 263, 267 |
| Conread position: | 77-301 |
| Cow position: | chr19:49799871-49799656 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 41, 88 |
| Conread position: | 858-1715 |
| Cow position: | chr19:49798972-49798136 (view UCSC Genome Browser custom track) |
| Alignm length: | 869 |
| Alignm identity: | 738 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 19 |
| Conread position: | 1007-1715 |
| Cow position: | chr19:51022070-51022771 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 624 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 24 |
| Conread position: | 1719-2327 |
| Cow position: | chr19:49798150-49797542 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 598 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1719-2736 |
| Cow position: | chr19:51022757-51023775 (view UCSC Genome Browser custom track) |
| Alignm length: | 1023 |
| Alignm identity: | 960 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 958 |
| Conread position: | 2324-2492 |
| Cow position: | chr19:49797445-49797277 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 155 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2478-2617 |
| Cow position: | chr19:49797176-49797037 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 133 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1612-2337 |
| Cow position: | chr2:17112381-17113111 (view UCSC Genome Browser custom track) |
| Alignm length: | 742 |
| Alignm identity: | 645 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 95 |
| Conread position: | 2195-2423 |
| Cow position: | chr2:39307413-39307191 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 2195-2606 |
| Cow position: | chr21:14502328-14501921 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 84 |
| Conread position: | 2194-2606 |
| Cow position: | chr23:25828420-25828832 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2196-2606 |
| Cow position: | chr23:25801922-25802332 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2196-2606 |
| Cow position: | chr23:25812255-25811845 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2197-2624 |
| Cow position: | chr23:24194841-24195268 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1853-2097 |
| Cow position: | chr29:4093758-4093535 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 2181-2606 |
| Cow position: | chr3:62482355-62481931 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 2195-2606 |
| Cow position: | chr3:17612204-17612615 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2195-2606 |
| Cow position: | chr3:17626813-17626402 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2195-2606 |
| Cow position: | chr3:17644319-17643908 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2196-2606 |
| Cow position: | chr3:62433570-62433160 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 151 |
| Conread position: | 2196-2607 |
| Cow position: | chr3:62444202-62443791 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1610-2174 |
| Cow position: | chr4:48614591-48614066 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 21 |
| Conread position: | 2195-2606 |
| Cow position: | chr4:10384584-10384995 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2195-2606 |
| Cow position: | chr5:33725368-33725780 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 354, 169 |
| Conread position: | 2195-2606 |
| Cow position: | chr7:15736957-15736546 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2197-2606 |
| Cow position: | chr7:968392-968801 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1887-2372 |
| Cow position: | chr8:30473082-30473543 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 148 |
| Conread position: | 2311-2606 |
| Cow position: | chr8:22901094-22900800 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |