Cow genome map
| Conread name: | Ss1.1-Lng1-LNG010047A03.5 |
| Conread position: | 6-1328 |
| Cow position: | chr1:93219731-93218402 (view UCSC Genome Browser custom track) |
| Alignm length: | 1341 |
| Alignm identity: | 1165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 62 |
| Conread position: | 279-1200 |
| Cow position: | chr1:63254709-63255624 (view UCSC Genome Browser custom track) |
| Alignm length: | 926 |
| Alignm identity: | 547 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 392, 403 |
| Conread position: | 1319-1452 |
| Cow position: | chr1:93218449-93218320 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 78-198 |
| Cow position: | chr10:19088060-19087940 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 196-523 |
| Cow position: | chr10:19086812-19086485 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 519-689 |
| Cow position: | chr10:19085776-19085606 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 684-877 |
| Cow position: | chr10:19085483-19085290 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 161 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 871-1058 |
| Cow position: | chr10:19084515-19084328 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1057-1201 |
| Cow position: | chr10:19083781-19083637 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 128 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 325-437 |
| Cow position: | chr11:9335607-9335719 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 97 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 522-682 |
| Cow position: | chr11:9337777-9337937 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 684-877 |
| Cow position: | chr11:9338702-9338895 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 871-1058 |
| Cow position: | chr11:9340532-9340719 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 156 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1057-1201 |
| Cow position: | chr11:9343069-9343213 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 105-1200 |
| Cow position: | chr16:36112529-36111440 (view UCSC Genome Browser custom track) |
| Alignm length: | 1100 |
| Alignm identity: | 708 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 101 |
| Conread position: | 435-877 |
| Cow position: | chr19:45155242-45154800 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 768-1156 |
| Cow position: | chr19:26728308-26727931 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 876-1058 |
| Cow position: | chr19:45154694-45154512 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 164 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1057-1210 |
| Cow position: | chr19:45154425-45154272 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 142 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 294-1174 |
| Cow position: | chr22:38195947-38195100 (view UCSC Genome Browser custom track) |
| Alignm length: | 888 |
| Alignm identity: | 546 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 295 |
| Conread position: | 84-353 |
| Cow position: | chr24:27075928-27076197 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 250, 69 |
| Conread position: | 195-441 |
| Cow position: | chr25:37061288-37061534 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 435-877 |
| Cow position: | chr25:37061968-37062410 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 196-332 |
| Cow position: | chr26:5420326-5420189 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 325-437 |
| Cow position: | chr26:5417264-5417152 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 517-689 |
| Cow position: | chr26:5414392-5414220 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 147 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 681-877 |
| Cow position: | chr26:5412437-5412241 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 870-1058 |
| Cow position: | chr26:5410972-5410785 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 156 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 22, 9 |
| Conread position: | 1057-1201 |
| Cow position: | chr26:5408175-5408031 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 131 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 78-198 |
| Cow position: | chr28:456087-456207 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 195-523 |
| Cow position: | chr28:456309-456637 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 522-692 |
| Cow position: | chr28:456739-456909 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 142 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 679-877 |
| Cow position: | chr28:456997-457195 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 806-1058 |
| Cow position: | chr28:457218-457471 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 1057-1205 |
| Cow position: | chr28:457556-457704 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 140 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 78-1200 |
| Cow position: | chr3:54413015-54414137 (view UCSC Genome Browser custom track) |
| Alignm length: | 1123 |
| Alignm identity: | 935 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 93-1200 |
| Cow position: | chr7:14383832-14382734 (view UCSC Genome Browser custom track) |
| Alignm length: | 1119 |
| Alignm identity: | 681 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 108 |