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Cow genome map

           
Conread name:
           
Ss1.1-LyN1-MLN01D040093.5
        

               
Conread position:
               
932-1514
               

               
Cow position:
               
chr1:2000089-1999504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
191, 280
               

               
Conread position:
               
932-1522
               

               
Cow position:
               
chr1:2000173-1999580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
167, 173
               

               
Conread position:
               
959-1473
               

               
Cow position:
               
chr1:2000230-1999713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
162, 324
               

               
Conread position:
               
1211-1492
               

               
Cow position:
               
chr1:2000226-1999946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
1292-1474
               

               
Cow position:
               
chr1:2000230-2000048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
907-1524
               

               
Cow position:
               
chr10:8996959-8996338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
625
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 293
               

               
Conread position:
               
929-1349
               

               
Cow position:
               
chr10:9031241-9031664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
46, 70
               

               
Conread position:
               
929-1470
               

               
Cow position:
               
chr10:21939167-21938627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 6
               

               
Conread position:
               
930-1485
               

               
Cow position:
               
chr10:9010411-9009853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 312
               

               
Conread position:
               
930-1521
               

               
Cow position:
               
chr10:8996683-8996089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 400
               

               
Conread position:
               
930-1523
               

               
Cow position:
               
chr10:8996767-8996171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 114
               

               
Conread position:
               
932-1440
               

               
Cow position:
               
chr10:8996513-8996001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 305
               

               
Conread position:
               
932-1505
               

               
Cow position:
               
chr10:8996597-8996021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 305
               

               
Conread position:
               
934-1521
               

               
Cow position:
               
chr10:9010575-9009985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 231
               

               
Conread position:
               
950-1523
               

               
Cow position:
               
chr10:9010475-9009899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 0
               

               
Conread position:
               
957-1523
               

               
Cow position:
               
chr10:21939378-21938823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
194, 141
               

               
Conread position:
               
958-1512
               

               
Cow position:
               
chr10:21939223-21938668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 277
               

               
Conread position:
               
1001-1433
               

               
Cow position:
               
chr10:9031229-9031664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
58, 67
               

               
Conread position:
               
1039-1476
               

               
Cow position:
               
chr10:21939226-21938786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
83, 393
               

               
Conread position:
               
1039-1523
               

               
Cow position:
               
chr10:21939380-21938907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
86, 146
               

               
Conread position:
               
1148-1517
               

               
Cow position:
               
chr10:9031295-9031664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
156, 151
               

               
Conread position:
               
1237-1524
               

               
Cow position:
               
chr10:9010521-9010234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
84, 76
               

               
Conread position:
               
1259-1521
               

               
Cow position:
               
chr10:9031322-9031584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
45, 37
               

               
Conread position:
               
930-1437
               

               
Cow position:
               
chr11:74554690-74554180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 0
               

               
Conread position:
               
932-1473
               

               
Cow position:
               
chr11:74554856-74554312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 372
               

               
Conread position:
               
932-1522
               

               
Cow position:
               
chr11:74554772-74554179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 298
               

               
Conread position:
               
933-1523
               

               
Cow position:
               
chr11:74555107-74554514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 304
               

               
Conread position:
               
937-1523
               

               
Cow position:
               
chr11:74555021-74554430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 546
               

               
Conread position:
               
1692-1934
               

               
Cow position:
               
chr12:9022801-9022558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
60, 27
               

               
Conread position:
               
236-424
               

               
Cow position:
               
chr13:46206184-46206372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
928-1525
               

               
Cow position:
               
chr13:22124755-22125351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
194, 10
               

               
Conread position:
               
930-1463
               

               
Cow position:
               
chr13:39930642-39931176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 128
               

               
Conread position:
               
932-1492
               

               
Cow position:
               
chr13:24162483-24163046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
190, 298
               

               
Conread position:
               
932-1494
               

               
Cow position:
               
chr13:56333712-56334286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
190, 0
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr13:22124925-22125519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 295
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr13:22125009-22125603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 82
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr13:24162651-24163245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 295
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr13:24162735-24163329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 82
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr13:39983980-39984574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
10, 18
               

               
Conread position:
               
934-1523
               

               
Cow position:
               
chr13:39984234-39984826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 294
               

               
Conread position:
               
935-1474
               

               
Cow position:
               
chr13:39984149-39984693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
15, 110
               

               
Conread position:
               
950-1312
               

               
Cow position:
               
chr13:24163257-24163622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
172, 283
               

               
Conread position:
               
950-1523
               

               
Cow position:
               
chr13:22124691-22125267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
172, 396
               

               
Conread position:
               
950-1523
               

               
Cow position:
               
chr13:24162417-24162993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
172, 204
               

               
Conread position:
               
956-1505
               

               
Cow position:
               
chr13:22124865-22125417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 226
               

               
Conread position:
               
956-1505
               

               
Cow position:
               
chr13:24162591-24163143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 241
               

               
Conread position:
               
956-1521
               

               
Cow position:
               
chr13:39930584-39931152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 102
               

               
Conread position:
               
956-1523
               

               
Cow position:
               
chr13:22125201-22125771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
169, 246
               

               
Conread position:
               
956-1523
               

               
Cow position:
               
chr13:24162927-24163497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
169, 246
               

               
Conread position:
               
958-1506
               

               
Cow position:
               
chr13:39984342-39984893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 86
               

               
Conread position:
               
963-1523
               

               
Cow position:
               
chr13:39983927-39984490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
74, 81
               

               
Conread position:
               
1041-1523
               

               
Cow position:
               
chr13:39930585-39931070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
1124-1506
               

               
Cow position:
               
chr13:56292172-56291792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
65, 17
               

               
Conread position:
               
1162-1524
               

               
Cow position:
               
chr13:56333693-56334055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1193-1515
               

               
Cow position:
               
chr13:56292187-56291868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
47, 31
               

               
Conread position:
               
1199-1525
               

               
Cow position:
               
chr13:56333646-56333972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
48, 29
               

               
Conread position:
               
927-1523
               

               
Cow position:
               
chr14:25894940-25895539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 229
               

               
Conread position:
               
927-1528
               

               
Cow position:
               
chr14:3080266-3079662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 595
               

               
Conread position:
               
928-1523
               

               
Cow position:
               
chr14:25894860-25895455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 78
               

               
Conread position:
               
929-1358
               

               
Cow position:
               
chr14:3155405-3155837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
187, 313
               

               
Conread position:
               
929-1523
               

               
Cow position:
               
chr14:3101171-3100580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
194, 6
               

               
Conread position:
               
930-1305
               

               
Cow position:
               
chr14:25910912-25911290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
194, 0
               

               
Conread position:
               
930-1428
               

               
Cow position:
               
chr14:447754-448255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 0
               

               
Conread position:
               
930-1434
               

               
Cow position:
               
chr14:25895867-25896374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
192, 331
               

               
Conread position:
               
930-1437
               

               
Cow position:
               
chr14:25836716-25837226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 165
               

               
Conread position:
               
930-1446
               

               
Cow position:
               
chr14:25859265-25859784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
186, 235
               

               
Conread position:
               
930-1513
               

               
Cow position:
               
chr14:3127857-3127271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 375
               

               
Conread position:
               
930-1514
               

               
Cow position:
               
chr14:3080597-3080010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 403
               

               
Conread position:
               
930-1515
               

               
Cow position:
               
chr14:25836548-25837136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 321
               

               
Conread position:
               
930-1515
               

               
Cow position:
               
chr14:25895447-25896035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 320
               

               
Conread position:
               
930-1522
               

               
Cow position:
               
chr14:3061492-3060897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
188, 228
               

               
Conread position:
               
930-1522
               

               
Cow position:
               
chr14:3101008-3100413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
26, 139
               

               
Conread position:
               
930-1523
               

               
Cow position:
               
chr14:25836296-25836892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 158
               

               
Conread position:
               
930-1523
               

               
Cow position:
               
chr14:25859937-25860533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 81
               

               
Conread position:
               
930-1523
               

               
Cow position:
               
chr14:25860021-25860617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 171
               

               
Conread position:
               
930-1523
               

               
Cow position:
               
chr14:25876736-25877332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 317
               

               
Conread position:
               
930-1523
               

               
Cow position:
               
chr14:25876988-25877584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 81
               

               
Conread position:
               
930-1523
               

               
Cow position:
               
chr14:25877072-25877668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 171
               

               
Conread position:
               
932-1410
               

               
Cow position:
               
chr14:680810-681291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
191, 267
               

               
Conread position:
               
932-1432
               

               
Cow position:
               
chr14:3155981-3156484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 310
               

               
Conread position:
               
932-1438
               

               
Cow position:
               
chr14:3127771-3127262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 0
               

               
Conread position:
               
932-1447
               

               
Cow position:
               
chr14:25784183-25784701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
167, 173
               

               
Conread position:
               
932-1473
               

               
Cow position:
               
chr14:25784099-25784643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
167, 173
               

               
Conread position:
               
932-1474
               

               
Cow position:
               
chr14:25877326-25877871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
120, 128
               

               
Conread position:
               
932-1474
               

               
Cow position:
               
chr14:25910750-25911291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
192, 41
               

               
Conread position:
               
932-1477
               

               
Cow position:
               
chr14:3100920-3100374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 33
               

               
Conread position:
               
932-1507
               

               
Cow position:
               
chr14:25795351-25794773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
56, 45
               

               
Conread position:
               
932-1512
               

               
Cow position:
               
chr14:25836634-25837217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 319
               

               
Conread position:
               
932-1514
               

               
Cow position:
               
chr14:3061238-3060653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 311
               

               
Conread position:
               
932-1514
               

               
Cow position:
               
chr14:25795183-25794598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
165, 178
               

               
Conread position:
               
932-1515
               

               
Cow position:
               
chr14:25795015-25794429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 182
               

               
Conread position:
               
932-1521
               

               
Cow position:
               
chr14:25860191-25860783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 157
               

               
Conread position:
               
932-1521
               

               
Cow position:
               
chr14:25877242-25877834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 157
               

               
Conread position:
               
932-1521
               

               
Cow position:
               
chr14:25895701-25896293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
120, 126
               

               
Conread position:
               
932-1522
               

               
Cow position:
               
chr14:680222-680815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 267
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr14:447588-448182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 231
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr14:3080511-3079917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 383
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr14:3080679-3080085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 0
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr14:3101253-3100664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
49, 59
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr14:3127939-3127345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 0
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr14:3155660-3156239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
384, 166
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr14:25783595-25784189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
192, 313
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr14:25784015-25784609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 173
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr14:25835962-25836556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
54, 73
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr14:25836466-25837060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 157
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr14:25859351-25859945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 305
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr14:25876570-25877164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 126
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr14:25895281-25895875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
193, 404
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr14:25895533-25896127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 308
               

               
Conread position:
               
932-1525
               

               
Cow position:
               
chr14:3128023-3127429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 578
               

               
Conread position:
               
932-1528
               

               
Cow position:
               
chr14:447672-448269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 370
               

               
Conread position:
               
934-1519
               

               
Cow position:
               
chr14:25783345-25783934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
120, 140
               

               
Conread position:
               
934-1521
               

               
Cow position:
               
chr14:25859437-25860027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
191, 399
               

               
Conread position:
               
934-1523
               

               
Cow position:
               
chr14:3128105-3127513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 0
               

               
Conread position:
               
934-1523
               

               
Cow position:
               
chr14:25877160-25877752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 62
               

               
Conread position:
               
934-1523
               

               
Cow position:
               
chr14:25895115-25895707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 126
               

               
Conread position:
               
935-1521
               

               
Cow position:
               
chr14:3080760-3080171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 268
               

               
Conread position:
               
935-1523
               

               
Cow position:
               
chr14:3081012-3080421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 40
               

               
Conread position:
               
936-1521
               

               
Cow position:
               
chr14:25876490-25877078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 153
               

               
Conread position:
               
936-1523
               

               
Cow position:
               
chr14:25783935-25784525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 174
               

               
Conread position:
               
936-1523
               

               
Cow position:
               
chr14:25836134-25836724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 42
               

               
Conread position:
               
936-1523
               

               
Cow position:
               
chr14:25876320-25876912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 154
               

               
Conread position:
               
937-1523
               

               
Cow position:
               
chr14:3080844-3080253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 295
               

               
Conread position:
               
946-1523
               

               
Cow position:
               
chr14:3080917-3080337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 19
               

               
Conread position:
               
949-1445
               

               
Cow position:
               
chr14:25794662-25794162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
176, 0
               

               
Conread position:
               
949-1523
               

               
Cow position:
               
chr14:25795250-25794673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
39, 28
               

               
Conread position:
               
950-1474
               

               
Cow position:
               
chr14:3101319-3100797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
110, 120
               

               
Conread position:
               
950-1514
               

               
Cow position:
               
chr14:3101402-3100841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
128, 66
               

               
Conread position:
               
950-1515
               

               
Cow position:
               
chr14:3155915-3156483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 382
               

               
Conread position:
               
950-1524
               

               
Cow position:
               
chr14:3061304-3060727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 291
               

               
Conread position:
               
952-1523
               

               
Cow position:
               
chr14:25876422-25876996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 40
               

               
Conread position:
               
956-1467
               

               
Cow position:
               
chr14:680750-681264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 291
               

               
Conread position:
               
956-1523
               

               
Cow position:
               
chr14:680666-681236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 0
               

               
Conread position:
               
956-1523
               

               
Cow position:
               
chr14:3061550-3060980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 532
               

               
Conread position:
               
956-1524
               

               
Cow position:
               
chr14:680498-681069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 243
               

               
Conread position:
               
965-1523
               

               
Cow position:
               
chr14:25835911-25836472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
27, 34
               

               
Conread position:
               
990-1435
               

               
Cow position:
               
chr14:433951-434400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
128, 256
               

               
Conread position:
               
995-1523
               

               
Cow position:
               
chr14:447567-448098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 233
               

               
Conread position:
               
995-1526
               

               
Cow position:
               
chr14:433872-434409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 310
               

               
Conread position:
               
998-1524
               

               
Cow position:
               
chr14:3101438-3100913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
68, 64
               

               
Conread position:
               
1010-1523
               

               
Cow position:
               
chr14:25910744-25911256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
19, 29
               

               
Conread position:
               
1014-1442
               

               
Cow position:
               
chr14:3155406-3155837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
109, 212
               

               
Conread position:
               
1014-1522
               

               
Cow position:
               
chr14:680220-680731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
110, 185
               

               
Conread position:
               
1025-1524
               

               
Cow position:
               
chr14:3081006-3080504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
42, 34
               

               
Conread position:
               
1094-1523
               

               
Cow position:
               
chr14:447582-448014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
1122-1523
               

               
Cow position:
               
chr14:3061717-3061316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
113, 105
               

               
Conread position:
               
1122-1523
               

               
Cow position:
               
chr14:3155433-3155834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
275, 279
               

               
Conread position:
               
1122-1524
               

               
Cow position:
               
chr14:680247-680649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
66, 49
               

               
Conread position:
               
1122-1524
               

               
Cow position:
               
chr14:3155922-3156324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
367, 358
               

               
Conread position:
               
1124-1523
               

               
Cow position:
               
chr14:433836-434235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
96, 89
               

               
Conread position:
               
1124-1523
               

               
Cow position:
               
chr14:3128164-3127765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
100, 116
               

               
Conread position:
               
1124-1523
               

               
Cow position:
               
chr14:25783370-25783769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
100, 112
               

               
Conread position:
               
1124-1523
               

               
Cow position:
               
chr14:25910777-25911172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
375, 13
               

               
Conread position:
               
1148-1525
               

               
Cow position:
               
chr14:447555-447930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
367, 0
               

               
Conread position:
               
1163-1523
               

               
Cow position:
               
chr14:25859249-25859609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
76, 71
               

               
Conread position:
               
1172-1521
               

               
Cow position:
               
chr14:25859174-25859523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1190-1522
               

               
Cow position:
               
chr14:3061733-3061401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
28, 48
               

               
Conread position:
               
1207-1523
               

               
Cow position:
               
chr14:3128165-3127849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
109, 116
               

               
Conread position:
               
1242-1473
               

               
Cow position:
               
chr14:420621-420850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
1254-1505
               

               
Cow position:
               
chr14:25795446-25795195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
151, 138
               

               
Conread position:
               
1263-1524
               

               
Cow position:
               
chr14:3155406-3155667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
68, 64
               

               
Conread position:
               
1265-1523
               

               
Cow position:
               
chr14:3061742-3061484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
220, 210
               

               
Conread position:
               
1288-1523
               

               
Cow position:
               
chr14:420583-420816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
44, 38
               

               
Conread position:
               
231-484
               

               
Cow position:
               
chr15:19143635-19143383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
930-1523
               

               
Cow position:
               
chr16:14627420-14626824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 175
               

               
Conread position:
               
932-1467
               

               
Cow position:
               
chr16:14627334-14626796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 0
               

               
Conread position:
               
932-1474
               

               
Cow position:
               
chr16:14627838-14627293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 213
               

               
Conread position:
               
1118-1525
               

               
Cow position:
               
chr16:14627479-14627074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
116, 9
               

               
Conread position:
               
1122-1523
               

               
Cow position:
               
chr16:14627393-14626992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 74
               

               
Conread position:
               
1123-1495
               

               
Cow position:
               
chr16:14627896-14627525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
112, 104
               

               
Conread position:
               
1259-1521
               

               
Cow position:
               
chr16:14627844-14627582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
930-1323
               

               
Cow position:
               
chr17:22589601-22589205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
193, 223
               

               
Conread position:
               
930-1390
               

               
Cow position:
               
chr17:22589685-22589222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 302
               

               
Conread position:
               
930-1446
               

               
Cow position:
               
chr17:22552015-22551496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
193, 305
               

               
Conread position:
               
930-1474
               

               
Cow position:
               
chr17:22452300-22451753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 35
               

               
Conread position:
               
930-1505
               

               
Cow position:
               
chr17:22499230-22498652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
192, 215
               

               
Conread position:
               
930-1506
               

               
Cow position:
               
chr17:22552855-22552276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
583
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 268
               

               
Conread position:
               
930-1521
               

               
Cow position:
               
chr17:22552435-22551841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 305
               

               
Conread position:
               
930-1521
               

               
Cow position:
               
chr17:22552771-22552177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 172
               

               
Conread position:
               
930-1523
               

               
Cow position:
               
chr17:22552099-22551503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 299
               

               
Conread position:
               
930-1523
               

               
Cow position:
               
chr17:22552351-22551755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 302
               

               
Conread position:
               
930-1523
               

               
Cow position:
               
chr17:22589853-22589257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
193, 237
               

               
Conread position:
               
930-1523
               

               
Cow position:
               
chr17:22590021-22589425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
193, 305
               

               
Conread position:
               
930-1523
               

               
Cow position:
               
chr17:22590189-22589593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
193, 299
               

               
Conread position:
               
930-1525
               

               
Cow position:
               
chr17:22552267-22551669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 313
               

               
Conread position:
               
930-1525
               

               
Cow position:
               
chr17:22590105-22589507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
193, 299
               

               
Conread position:
               
931-1446
               

               
Cow position:
               
chr17:22499061-22498543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
154, 179
               

               
Conread position:
               
932-1274
               

               
Cow position:
               
chr17:41440536-41440191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
191, 309
               

               
Conread position:
               
932-1389
               

               
Cow position:
               
chr17:22473501-22473962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
191, 214
               

               
Conread position:
               
932-1466
               

               
Cow position:
               
chr17:22452214-22451677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 168
               

               
Conread position:
               
932-1467
               

               
Cow position:
               
chr17:22499312-22498774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 0
               

               
Conread position:
               
932-1517
               

               
Cow position:
               
chr17:41440954-41440368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
190, 6
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr17:22499144-22498550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 372
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr17:22552517-22551923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 144
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr17:22552937-22552343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 52
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr17:44467441-44468033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
186, 6
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr17:44467691-44468285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
191, 213
               

               
Conread position:
               
933-1440
               

               
Cow position:
               
chr17:22452129-22451619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
191, 299
               

               
Conread position:
               
935-1521
               

               
Cow position:
               
chr17:22499393-22498804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 141
               

               
Conread position:
               
935-1523
               

               
Cow position:
               
chr17:22473336-22473928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 295
               

               
Conread position:
               
948-1489
               

               
Cow position:
               
chr17:22590255-22589710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 388
               

               
Conread position:
               
949-1523
               

               
Cow position:
               
chr17:22473266-22473843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
149, 155
               

               
Conread position:
               
950-1523
               

               
Cow position:
               
chr17:22553003-22552427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 279
               

               
Conread position:
               
956-1474
               

               
Cow position:
               
chr17:41440848-41440327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 291
               

               
Conread position:
               
956-1512
               

               
Cow position:
               
chr17:22452358-22451799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 0
               

               
Conread position:
               
956-1524
               

               
Cow position:
               
chr17:41441016-41440445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 0
               

               
Conread position:
               
958-1446
               

               
Cow position:
               
chr17:41440678-41440187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
164, 275
               

               
Conread position:
               
990-1515
               

               
Cow position:
               
chr17:22553131-22552603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
132, 242
               

               
Conread position:
               
998-1523
               

               
Cow position:
               
chr17:44467421-44467949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
118, 244
               

               
Conread position:
               
1010-1549
               

               
Cow position:
               
chr17:44467853-44468390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
113, 502
               

               
Conread position:
               
1014-1515
               

               
Cow position:
               
chr17:22499398-22498894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 307
               

               
Conread position:
               
1025-1452
               

               
Cow position:
               
chr17:44467364-44467794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
98, 288
               

               
Conread position:
               
1100-1523
               

               
Cow position:
               
chr17:22499396-22498970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
1109-1523
               

               
Cow position:
               
chr17:22452373-22451956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
15, 195
               

               
Conread position:
               
1119-1523
               

               
Cow position:
               
chr17:44467377-44467781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1122-1474
               

               
Cow position:
               
chr17:41441099-41440747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
112, 116
               

               
Conread position:
               
1127-1523
               

               
Cow position:
               
chr17:22553074-22552679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
108, 9
               

               
Conread position:
               
1152-1468
               

               
Cow position:
               
chr17:22452411-22452095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
75, 96
               

               
Conread position:
               
1193-1523
               

               
Cow position:
               
chr17:22553093-22552763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
80, 85
               

               
Conread position:
               
1198-1523
               

               
Cow position:
               
chr17:41441107-41440782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
36, 40
               

               
Conread position:
               
1199-1523
               

               
Cow position:
               
chr17:22590253-22589929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
36, 41
               

               
Conread position:
               
1265-1523
               

               
Cow position:
               
chr17:22553105-22552847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
92, 97
               

               
Conread position:
               
236-477
               

               
Cow position:
               
chr18:56272305-56272064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
209, 219
               

               
Conread position:
               
236-478
               

               
Cow position:
               
chr18:55668176-55667934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
55, 42
               

               
Conread position:
               
244-480
               

               
Cow position:
               
chr18:56413602-56413838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 16
               

               
Conread position:
               
254-474
               

               
Cow position:
               
chr18:56398589-56398369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
284-447
               

               
Cow position:
               
chr18:55576866-55576703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
148, 161
               

               
Conread position:
               
881-1477
               

               
Cow position:
               
chr18:51838837-51838243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
243, 338
               

               
Conread position:
               
908-1505
               

               
Cow position:
               
chr18:43022590-43021991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 12
               

               
Conread position:
               
914-1523
               

               
Cow position:
               
chr18:50245976-50246587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 17
               

               
Conread position:
               
917-1523
               

               
Cow position:
               
chr18:53635725-53635114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
612
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
920-1511
               

               
Cow position:
               
chr18:50295428-50296019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
203, 441
               

               
Conread position:
               
920-1522
               

               
Cow position:
               
chr18:56330198-56329594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
611
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 14
               

               
Conread position:
               
927-1523
               

               
Cow position:
               
chr18:51400357-51400958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 185
               

               
Conread position:
               
927-1523
               

               
Cow position:
               
chr18:53610390-53609789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 388
               

               
Conread position:
               
928-1523
               

               
Cow position:
               
chr18:56316045-56316643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 388
               

               
Conread position:
               
929-1310
               

               
Cow position:
               
chr18:14453291-14452907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
192, 0
               

               
Conread position:
               
929-1440
               

               
Cow position:
               
chr18:42827401-42827915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
170, 179
               

               
Conread position:
               
930-1074
               

               
Cow position:
               
chr18:50084120-50084264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
930-1221
               

               
Cow position:
               
chr18:43048646-43048352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
167, 174
               

               
Conread position:
               
930-1356
               

               
Cow position:
               
chr18:42792474-42792903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 0
               

               
Conread position:
               
930-1357
               

               
Cow position:
               
chr18:14453770-14453340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
190, 253
               

               
Conread position:
               
930-1390
               

               
Cow position:
               
chr18:50059037-50058574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 376
               

               
Conread position:
               
930-1397
               

               
Cow position:
               
chr18:50048805-50048335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
193, 303
               

               
Conread position:
               
930-1430
               

               
Cow position:
               
chr18:43168042-43168545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 0
               

               
Conread position:
               
930-1438
               

               
Cow position:
               
chr18:42744299-42743788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
195, 312
               

               
Conread position:
               
930-1439
               

               
Cow position:
               
chr18:50246327-50246839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 145
               

               
Conread position:
               
930-1443
               

               
Cow position:
               
chr18:50271627-50272143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 305
               

               
Conread position:
               
930-1455
               

               
Cow position:
               
chr18:51839311-51838783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
163, 297
               

               
Conread position:
               
930-1459
               

               
Cow position:
               
chr18:42674903-42674372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 132
               

               
Conread position:
               
930-1467
               

               
Cow position:
               
chr18:41197993-41198533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 0
               

               
Conread position:
               
930-1467
               

               
Cow position:
               
chr18:53509404-53509944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 153
               

               
Conread position:
               
930-1467
               

               
Cow position:
               
chr18:53525858-53526398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 153
               

               
Conread position:
               
930-1473
               

               
Cow position:
               
chr18:40324802-40324256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
191, 303
               

               
Conread position:
               
930-1473
               

               
Cow position:
               
chr18:41949098-41948552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 237
               

               
Conread position:
               
930-1474
               

               
Cow position:
               
chr18:42675071-42674524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 299
               

               
Conread position:
               
930-1474
               

               
Cow position:
               
chr18:42791886-42792433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 149
               

               
Conread position:
               
930-1474
               

               
Cow position:
               
chr18:50099225-50099772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 52
               

               
Conread position:
               
930-1475
               

               
Cow position:
               
chr18:50048889-50048341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
75, 84
               

               
Conread position:
               
930-1475
               

               
Cow position:
               
chr18:50059457-50058909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 209
               

               
Conread position:
               
930-1475
               

               
Cow position:
               
chr18:50099645-50100193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
124, 145
               

               
Conread position:
               
930-1477
               

               
Cow position:
               
chr18:43093588-43093038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 0
               

               
Conread position:
               
930-1482
               

               
Cow position:
               
chr18:43093336-43092782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
121, 143
               

               
Conread position:
               
930-1491
               

               
Cow position:
               
chr18:53586581-53586017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 14
               

               
Conread position:
               
930-1505
               

               
Cow position:
               
chr18:50058953-50058377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 453
               

               
Conread position:
               
930-1505
               

               
Cow position:
               
chr18:50059121-50058543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
194, 225
               

               
Conread position:
               
930-1505
               

               
Cow position:
               
chr18:50281756-50282334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 60
               

               
Conread position:
               
930-1506
               

               
Cow position:
               
chr18:41949014-41948435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 315
               

               
Conread position:
               
930-1506
               

               
Cow position:
               
chr18:56329433-56328854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 0
               

               
Conread position:
               
930-1507
               

               
Cow position:
               
chr18:42693714-42693135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
192, 298
               

               
Conread position:
               
930-1515
               

               
Cow position:
               
chr18:41949182-41948594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 138
               

               
Conread position:
               
930-1515
               

               
Cow position:
               
chr18:42744551-42743963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 180
               

               
Conread position:
               
930-1515
               

               
Cow position:
               
chr18:49033216-49032628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 303
               

               
Conread position:
               
930-1517
               

               
Cow position:
               
chr18:52012277-52011687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 214
               

               
Conread position:
               
930-1520
               

               
Cow position:
               
chr18:55066944-55066351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 178
               

               
Conread position:
               
930-1521
               

               
Cow position:
               
chr18:56493842-56494436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 178
               

               
Conread position:
               
930-1522
               

               
Cow position:
               
chr18:42724506-42723909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 179
               

               
Conread position:
               
930-1522
               

               
Cow position:
               
chr18:49022728-49023323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
107, 114
               

               
Conread position:
               
930-1523
               

               
Cow position:
               
chr18:33064352-33063756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 314
               

               
Conread position:
               
930-1523
               

               
Cow position:
               
chr18:33064688-33064092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 63
               

               
Conread position:
               
930-1523
               

               
Cow position:
               
chr18:40086264-40085677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
155, 56
               

               
Conread position:
               
930-1523
               

               
Cow position:
               
chr18:41198161-41198757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 374
               

               
Conread position:
               
930-1523
               

               
Cow position:
               
chr18:42693546-42692950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
193, 268
               

               
Conread position:
               
930-1523
               

               
Cow position:
               
chr18:42791046-42791642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
49, 45
               

               
Conread position:
               
930-1523
               

               
Cow position:
               
chr18:42791970-42792566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 372
               

               
Conread position:
               
930-1523
               

               
Cow position:
               
chr18:42792306-42792902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 302
               

               
Conread position:
               
930-1523
               

               
Cow position:
               
chr18:43167790-43168386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 21
               

               
Conread position:
               
930-1523
               

               
Cow position:
               
chr18:43167874-43168470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 400
               

               
Conread position:
               
930-1523
               

               
Cow position:
               
chr18:49033048-49032452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 386
               

               
Conread position:
               
930-1523
               

               
Cow position:
               
chr18:50022153-50021551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
83, 125
               

               
Conread position:
               
930-1523
               

               
Cow position:
               
chr18:50059205-50058609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
193, 374
               

               
Conread position:
               
930-1523
               

               
Cow position:
               
chr18:50059289-50058693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 302
               

               
Conread position:
               
930-1523
               

               
Cow position:
               
chr18:50083364-50083960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 559
               

               
Conread position:
               
930-1523
               

               
Cow position:
               
chr18:50099057-50099653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
132, 145
               

               
Conread position:
               
930-1523
               

               
Cow position:
               
chr18:50271543-50272139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 475
               

               
Conread position:
               
930-1523
               

               
Cow position:
               
chr18:50848501-50849097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 298
               

               
Conread position:
               
930-1523
               

               
Cow position:
               
chr18:50848669-50849265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 151
               

               
Conread position:
               
930-1523
               

               
Cow position:
               
chr18:51789811-51789215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 21
               

               
Conread position:
               
930-1523
               

               
Cow position:
               
chr18:51839479-51838883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
184, 146
               

               
Conread position:
               
930-1523
               

               
Cow position:
               
chr18:52012444-52011849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 35
               

               
Conread position:
               
930-1523
               

               
Cow position:
               
chr18:52447274-52447870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 0
               

               
Conread position:
               
930-1523
               

               
Cow position:
               
chr18:56316215-56316811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 283
               

               
Conread position:
               
930-1523
               

               
Cow position:
               
chr18:56329517-56328921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 373
               

               
Conread position:
               
930-1523
               

               
Cow position:
               
chr18:56329853-56329257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 300
               

               
Conread position:
               
930-1523
               

               
Cow position:
               
chr18:56329937-56329341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 307
               

               
Conread position:
               
930-1525
               

               
Cow position:
               
chr18:50083616-50084214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 15
               

               
Conread position:
               
930-1525
               

               
Cow position:
               
chr18:50848333-50848931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 305
               

               
Conread position:
               
930-1525
               

               
Cow position:
               
chr18:52427715-52428313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 237
               

               
Conread position:
               
930-1525
               

               
Cow position:
               
chr18:52433064-52433662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 237
               

               
Conread position:
               
930-1525
               

               
Cow position:
               
chr18:53586749-53586151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 224
               

               
Conread position:
               
930-1525
               

               
Cow position:
               
chr18:55523474-55524072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
107, 114
               

               
Conread position:
               
930-1526
               

               
Cow position:
               
chr18:50295270-50295869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 226
               

               
Conread position:
               
931-1391
               

               
Cow position:
               
chr18:42960216-42959753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
168, 174
               

               
Conread position:
               
931-1517
               

               
Cow position:
               
chr18:49032711-49032122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 316
               

               
Conread position:
               
931-1523
               

               
Cow position:
               
chr18:50049056-50048461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
128, 140
               

               
Conread position:
               
931-1523
               

               
Cow position:
               
chr18:51400279-51400874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 0
               

               
Conread position:
               
931-1523
               

               
Cow position:
               
chr18:51752252-51751657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
192, 299
               

               
Conread position:
               
932-1268
               

               
Cow position:
               
chr18:56267460-56267123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
189, 270
               

               
Conread position:
               
932-1272
               

               
Cow position:
               
chr18:14453204-14452861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
193, 300
               

               
Conread position:
               
932-1274
               

               
Cow position:
               
chr18:49022982-49023327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
188, 0
               

               
Conread position:
               
932-1284
               

               
Cow position:
               
chr18:1418254-1418609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
191, 0
               

               
Conread position:
               
932-1353
               

               
Cow position:
               
chr18:55497454-55497030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
190, 383
               

               
Conread position:
               
932-1380
               

               
Cow position:
               
chr18:51812464-51812013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
192, 0
               

               
Conread position:
               
932-1402
               

               
Cow position:
               
chr18:42959879-42959415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
56, 44
               

               
Conread position:
               
932-1412
               

               
Cow position:
               
chr18:50849007-50849490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
160, 144
               

               
Conread position:
               
932-1429
               

               
Cow position:
               
chr18:50281842-50282342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
153, 163
               

               
Conread position:
               
932-1430
               

               
Cow position:
               
chr18:43048728-43048229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
193, 218
               

               
Conread position:
               
932-1432
               

               
Cow position:
               
chr18:51400700-51401203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
192, 0
               

               
Conread position:
               
932-1433
               

               
Cow position:
               
chr18:42984972-42984468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
45, 67
               

               
Conread position:
               
932-1433
               

               
Cow position:
               
chr18:51765410-51764906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
153, 169
               

               
Conread position:
               
932-1437
               

               
Cow position:
               
chr18:44398019-44397511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 0
               

               
Conread position:
               
932-1439
               

               
Cow position:
               
chr18:56128709-56129218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
191, 398
               

               
Conread position:
               
932-1440
               

               
Cow position:
               
chr18:50848923-50849434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
185, 267
               

               
Conread position:
               
932-1441
               

               
Cow position:
               
chr18:40075191-40075703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
192, 215
               

               
Conread position:
               
932-1442
               

               
Cow position:
               
chr18:53525944-53526455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
135, 151
               

               
Conread position:
               
932-1442
               

               
Cow position:
               
chr18:55066858-55066345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
191, 300
               

               
Conread position:
               
932-1443
               

               
Cow position:
               
chr18:50099815-50100329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
42, 54
               

               
Conread position:
               
932-1445
               

               
Cow position:
               
chr18:1418086-1418602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 311
               

               
Conread position:
               
932-1446
               

               
Cow position:
               
chr18:51752083-51751565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
192, 267
               

               
Conread position:
               
932-1449
               

               
Cow position:
               
chr18:33064098-33063578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
193, 350
               

               
Conread position:
               
932-1453
               

               
Cow position:
               
chr18:56329347-56328824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 142
               

               
Conread position:
               
932-1456
               

               
Cow position:
               
chr18:55523812-55524339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 176
               

               
Conread position:
               
932-1464
               

               
Cow position:
               
chr18:42791300-42791835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
191, 373
               

               
Conread position:
               
932-1467
               

               
Cow position:
               
chr18:40324464-40323927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
189, 216
               

               
Conread position:
               
932-1467
               

               
Cow position:
               
chr18:52447780-52448319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 0
               

               
Conread position:
               
932-1467
               

               
Cow position:
               
chr18:53498311-53498849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
191, 156
               

               
Conread position:
               
932-1467
               

               
Cow position:
               
chr18:56434297-56434834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
191, 225
               

               
Conread position:
               
932-1468
               

               
Cow position:
               
chr18:44154199-44153667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
165, 175
               

               
Conread position:
               
932-1468
               

               
Cow position:
               
chr18:54992820-54993359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
191, 218
               

               
Conread position:
               
932-1470
               

               
Cow position:
               
chr18:54993408-54993947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
191, 215
               

               
Conread position:
               
932-1471
               

               
Cow position:
               
chr18:53610215-53609674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
42, 52
               

               
Conread position:
               
932-1473
               

               
Cow position:
               
chr18:42959963-42959428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
193, 213
               

               
Conread position:
               
932-1473
               

               
Cow position:
               
chr18:44154283-44153746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
193, 265
               

               
Conread position:
               
932-1473
               

               
Cow position:
               
chr18:44253723-44253192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
167, 172
               

               
Conread position:
               
932-1473
               

               
Cow position:
               
chr18:53498221-53498768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
77, 231
               

               
Conread position:
               
932-1473
               

               
Cow position:
               
chr18:53509238-53509782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 52
               

               
Conread position:
               
932-1473
               

               
Cow position:
               
chr18:54980064-54980607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
191, 296
               

               
Conread position:
               
932-1474
               

               
Cow position:
               
chr18:56128205-56128750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 0
               

               
Conread position:
               
932-1477
               

               
Cow position:
               
chr18:42675237-42674689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 300
               

               
Conread position:
               
932-1479
               

               
Cow position:
               
chr18:53509490-53510036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
158, 169
               

               
Conread position:
               
932-1490
               

               
Cow position:
               
chr18:41197575-41198135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 367
               

               
Conread position:
               
932-1491
               

               
Cow position:
               
chr18:51765830-51765268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
192, 351
               

               
Conread position:
               
932-1491
               

               
Cow position:
               
chr18:51874063-51874618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
67, 47
               

               
Conread position:
               
932-1492
               

               
Cow position:
               
chr18:41948844-41948283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 311
               

               
Conread position:
               
932-1492
               

               
Cow position:
               
chr18:42837684-42837121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 0
               

               
Conread position:
               
932-1505
               

               
Cow position:
               
chr18:40075107-40075683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
167, 182
               

               
Conread position:
               
932-1505
               

               
Cow position:
               
chr18:42985056-42984480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
56, 47
               

               
Conread position:
               
932-1505
               

               
Cow position:
               
chr18:55008811-55009385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
191, 289
               

               
Conread position:
               
932-1506
               

               
Cow position:
               
chr18:43093418-43092841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 220
               

               
Conread position:
               
932-1506
               

               
Cow position:
               
chr18:43120155-43119578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 173
               

               
Conread position:
               
932-1506
               

               
Cow position:
               
chr18:52447696-52448273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 0
               

               
Conread position:
               
932-1512
               

               
Cow position:
               
chr18:44398103-44397520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 398
               

               
Conread position:
               
932-1514
               

               
Cow position:
               
chr18:53525692-53526277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 52
               

               
Conread position:
               
932-1515
               

               
Cow position:
               
chr18:33092938-33092358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
191, 390
               

               
Conread position:
               
932-1515
               

               
Cow position:
               
chr18:40306757-40307343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
154, 169
               

               
Conread position:
               
932-1515
               

               
Cow position:
               
chr18:42744381-42743795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 232
               

               
Conread position:
               
932-1515
               

               
Cow position:
               
chr18:42985476-42984890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 178
               

               
Conread position:
               
932-1515
               

               
Cow position:
               
chr18:43022735-43022149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
192, 313
               

               
Conread position:
               
932-1515
               

               
Cow position:
               
chr18:44184886-44184300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 173
               

               
Conread position:
               
932-1515
               

               
Cow position:
               
chr18:51789305-51788719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
192, 367
               

               
Conread position:
               
932-1515
               

               
Cow position:
               
chr18:56329599-56329013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 474
               

               
Conread position:
               
932-1521
               

               
Cow position:
               
chr18:33064602-33064010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 153
               

               
Conread position:
               
932-1521
               

               
Cow position:
               
chr18:40324632-40324040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 146
               

               
Conread position:
               
932-1521
               

               
Cow position:
               
chr18:51400448-51401040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 47
               

               
Conread position:
               
932-1521
               

               
Cow position:
               
chr18:53586663-53586071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 151
               

               
Conread position:
               
932-1521
               

               
Cow position:
               
chr18:55018132-55018724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
133, 128
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr18:33064434-33063840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 19
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr18:40306253-40306847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 414
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr18:40324716-40324122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 381
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr18:41197911-41198505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 245
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr18:42675153-42674559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 214
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr18:42724588-42723994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
190, 266
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr18:42744633-42744039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 296
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr18:42837768-42837174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 178
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr18:42985224-42984630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 214
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr18:43022819-43022225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 153
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr18:43175188-43174594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 169
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr18:44154367-44153780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
57, 65
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr18:44184802-44184208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
66, 50
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr18:44239841-44240435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
120, 127
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr18:44240093-44240687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
56, 48
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr18:44398271-44397677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 373
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr18:44398355-44397761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 304
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr18:49033130-49032536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 305
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr18:50059539-50058945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
161, 220
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr18:50099395-50099989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
47, 57
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr18:50246077-50246671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 146
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr18:50848839-50849431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 588
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr18:51368098-51367505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
192, 289
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr18:51368434-51367840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 297
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr18:51789557-51788963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 131
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr18:51812716-51812122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 309
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr18:51969425-51970008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
56, 48
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr18:52428305-52428899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 55
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr18:52428389-52428983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 398
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr18:52433234-52433830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 235
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr18:52433486-52434080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 44
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr18:52433570-52434164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 398
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr18:52447108-52447702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 232
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr18:52447528-52448122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 0
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr18:52447612-52448206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 298
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr18:53610467-53609873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 226
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr18:53636044-53635450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 384
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr18:56128121-56128715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 414
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr18:56247729-56247143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 111
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr18:56316133-56316727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 416
               

               
Conread position:
               
932-1523
               

               
Cow position:
               
chr18:56329765-56329173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 6
               

               
Conread position:
               
932-1524
               

               
Cow position:
               
chr18:33065022-33064427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 80
               

               
Conread position:
               
932-1524
               

               
Cow position:
               
chr18:52433402-52433997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 398
               

               
Conread position:
               
932-1524
               

               
Cow position:
               
chr18:52447444-52448039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 298
               

               
Conread position:
               
932-1524
               

               
Cow position:
               
chr18:53509322-53509917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 135
               

               
Conread position:
               
932-1524
               

               
Cow position:
               
chr18:53559842-53560437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 226
               

               
Conread position:
               
932-1524
               

               
Cow position:
               
chr18:54967956-54968549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
141, 82
               

               
Conread position:
               
932-1524
               

               
Cow position:
               
chr18:54979896-54980491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
131, 169
               

               
Conread position:
               
932-1524
               

               
Cow position:
               
chr18:55018048-55018643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
192, 311
               

               
Conread position:
               
932-1524
               

               
Cow position:
               
chr18:55067026-55066431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 0
               

               
Conread position:
               
932-1524
               

               
Cow position:
               
chr18:55067110-55066515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 397
               

               
Conread position:
               
932-1524
               

               
Cow position:
               
chr18:55523392-55523987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 0
               

               
Conread position:
               
932-1524
               

               
Cow position:
               
chr18:55523728-55524323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
167, 181
               

               
Conread position:
               
932-1525
               

               
Cow position:
               
chr18:1418002-1418598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 0
               

               
Conread position:
               
932-1525
               

               
Cow position:
               
chr18:42985392-42984796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
59, 45
               

               
Conread position:
               
932-1525
               

               
Cow position:
               
chr18:44184550-44183954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 49
               

               
Conread position:
               
932-1525
               

               
Cow position:
               
chr18:50246161-50246757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 224
               

               
Conread position:
               
932-1525
               

               
Cow position:
               
chr18:50848587-50849183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 300
               

               
Conread position:
               
932-1525
               

               
Cow position:
               
chr18:50848755-50849351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
28, 22
               

               
Conread position:
               
932-1525
               

               
Cow position:
               
chr18:52427885-52428481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 235
               

               
Conread position:
               
932-1525
               

               
Cow position:
               
chr18:52428221-52428817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 145
               

               
Conread position:
               
932-1525
               

               
Cow position:
               
chr18:53560094-53560690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 391
               

               
Conread position:
               
932-1525
               

               
Cow position:
               
chr18:54993240-54993836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
134, 154
               

               
Conread position:
               
932-1525
               

               
Cow position:
               
chr18:56316301-56316895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 374
               

               
Conread position:
               
932-1527
               

               
Cow position:
               
chr18:54967035-54967633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
194, 296
               

               
Conread position:
               
932-1528
               

               
Cow position:
               
chr18:14453936-14453338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
183, 187
               

               
Conread position:
               
932-1529
               

               
Cow position:
               
chr18:42693964-42693368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 127
               

               
Conread position:
               
932-1549
               

               
Cow position:
               
chr18:50083702-50084323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
623
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 319
               

               
Conread position:
               
933-1467
               

               
Cow position:
               
chr18:54966952-54967489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
197, 371
               

               
Conread position:
               
933-1473
               

               
Cow position:
               
chr18:51367762-51367219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
47, 57
               

               
Conread position:
               
933-1506
               

               
Cow position:
               
chr18:51400533-51401109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 0
               

               
Conread position:
               
933-1523
               

               
Cow position:
               
chr18:44239758-44240351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
55, 44
               

               
Conread position:
               
933-1523
               

               
Cow position:
               
chr18:50099144-50099737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
121, 133
               

               
Conread position:
               
933-1524
               

               
Cow position:
               
chr18:42675320-42674726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 297
               

               
Conread position:
               
933-1524
               

               
Cow position:
               
chr18:42791637-42792231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 295
               

               
Conread position:
               
933-1524
               

               
Cow position:
               
chr18:53498138-53498735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
164, 237
               

               
Conread position:
               
934-1471
               

               
Cow position:
               
chr18:56494014-56494551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 502
               

               
Conread position:
               
934-1515
               

               
Cow position:
               
chr18:51812882-51812298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 0
               

               
Conread position:
               
934-1521
               

               
Cow position:
               
chr18:40324882-40324292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 110
               

               
Conread position:
               
934-1521
               

               
Cow position:
               
chr18:53560180-53560770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 476
               

               
Conread position:
               
934-1523
               

               
Cow position:
               
chr18:42744715-42744123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 65
               

               
Conread position:
               
934-1523
               

               
Cow position:
               
chr18:42985138-42984546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
54, 41
               

               
Conread position:
               
934-1523
               

               
Cow position:
               
chr18:50059621-50059029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 295
               

               
Conread position:
               
934-1523
               

               
Cow position:
               
chr18:51367928-51367337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
187, 123
               

               
Conread position:
               
934-1525
               

               
Cow position:
               
chr18:50271463-50272057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 0
               

               
Conread position:
               
934-1525
               

               
Cow position:
               
chr18:51368348-51367757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 295
               

               
Conread position:
               
935-1305
               

               
Cow position:
               
chr18:50251170-50251543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
47, 55
               

               
Conread position:
               
935-1467
               

               
Cow position:
               
chr18:42960296-42959761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
120, 130
               

               
Conread position:
               
935-1477
               

               
Cow position:
               
chr18:53636125-53635580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 493
               

               
Conread position:
               
935-1477
               

               
Cow position:
               
chr18:56128040-56128585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
188, 381
               

               
Conread position:
               
935-1513
               

               
Cow position:
               
chr18:55008560-55009143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
15, 141
               

               
Conread position:
               
935-1514
               

               
Cow position:
               
chr18:50246246-50246830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 226
               

               
Conread position:
               
935-1521
               

               
Cow position:
               
chr18:42791133-42791724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
21, 401
               

               
Conread position:
               
935-1523
               

               
Cow position:
               
chr18:40086849-40086256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
113, 85
               

               
Conread position:
               
935-1523
               

               
Cow position:
               
chr18:43023068-43022477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
164, 175
               

               
Conread position:
               
935-1523
               

               
Cow position:
               
chr18:43120236-43119645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
164, 175
               

               
Conread position:
               
935-1523
               

               
Cow position:
               
chr18:44240180-44240771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
63, 48
               

               
Conread position:
               
935-1523
               

               
Cow position:
               
chr18:51813049-51812458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
95, 104
               

               
Conread position:
               
935-1523
               

               
Cow position:
               
chr18:53635959-53635366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
935-1525
               

               
Cow position:
               
chr18:55018217-55018813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
21, 168
               

               
Conread position:
               
936-1473
               

               
Cow position:
               
chr18:52432986-52433526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
185, 228
               

               
Conread position:
               
936-1515
               

               
Cow position:
               
chr18:42744461-42743879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
583
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 0
               

               
Conread position:
               
936-1521
               

               
Cow position:
               
chr18:44398435-44397847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 368
               

               
Conread position:
               
936-1523
               

               
Cow position:
               
chr18:42694044-42693454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 305
               

               
Conread position:
               
936-1523
               

               
Cow position:
               
chr18:43093908-43093328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 143
               

               
Conread position:
               
936-1523
               

               
Cow position:
               
chr18:43175268-43174678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 168
               

               
Conread position:
               
936-1523
               

               
Cow position:
               
chr18:52447028-52447618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 331
               

               
Conread position:
               
936-1524
               

               
Cow position:
               
chr18:42693792-42693202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
187, 367
               

               
Conread position:
               
936-1525
               

               
Cow position:
               
chr18:52427637-52428229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
185, 228
               

               
Conread position:
               
937-1505
               

               
Cow position:
               
chr18:43167965-43168536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 230
               

               
Conread position:
               
937-1515
               

               
Cow position:
               
chr18:53587080-53586497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 148
               

               
Conread position:
               
937-1523
               

               
Cow position:
               
chr18:49022401-49022988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
119, 112
               

               
Conread position:
               
938-1523
               

               
Cow position:
               
chr18:50281678-50282268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 139
               

               
Conread position:
               
938-1524
               

               
Cow position:
               
chr18:56434135-56434724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
170, 147
               

               
Conread position:
               
942-1524
               

               
Cow position:
               
chr18:53559684-53560269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 205
               

               
Conread position:
               
943-1358
               

               
Cow position:
               
chr18:49022909-49023327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
19, 14
               

               
Conread position:
               
943-1523
               

               
Cow position:
               
chr18:51839550-51838967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
156, 170
               
944-1506UCSC Genome Browser

               
Conread position:
               

               

               
Cow position:
               
chr18:49032614-49032049 (view  custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 506
               
946-1474UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr18:33093092-33092561 (view  custom track)

               
               
               
Alignm length:
535

               
               
               
Alignm identity:
341

               
               
               
Alignm E-value:
0

               
               
               
Alignm gaps (pig, cow):
169, 358
946-1523UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr18:42694202-42693622 (view  custom track)

               
               
               
Alignm length:
582

               
               
               
Alignm identity:
344

               
               
               
Alignm E-value:
2e-36

               
               
               
Alignm gaps (pig, cow):
177, 539

               
               
               Conread position:947-1505
               
               
               Cow position:chr18:56493941-56494503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 54

               
               
               Conread position:949-1447
               
               
               Cow position:chr18:14454003-14453502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:314
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):28, 41

               
               
               Conread position:949-1473
               
               
               Cow position:chr18:41949331-41948804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 292

               
               
               Conread position:949-1515
               
               
               Cow position:chr18:42837835-42837266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 155

               
               
               Conread position:949-1521
               
               
               Cow position:chr18:56433904-56434469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:334
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):159, 118

               
               
               Conread position:949-1523
               
               
               Cow position:chr18:43022634-43022057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:350
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):150, 156

               
               
               Conread position:949-1523
               
               
               Cow position:chr18:43175339-43174762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:359
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):88, 95

               
               
               Conread position:949-1523
               
               
               Cow position:chr18:50098908-50099485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:346
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):175, 350

               
               
               Conread position:949-1523
               
               
               Cow position:chr18:50295205-50295782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 165

               
               
               Conread position:949-1523
               
               
               Cow position:chr18:51765729-51765152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:339
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):162, 136

               
               
               Conread position:949-1525
               
               
               Cow position:chr18:41949247-41948668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 296

               
               
               Conread position:950-1409
               
               
               Cow position:chr18:51874160-51874620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:277
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):160, 35

               
               
               Conread position:950-1467
               
               
               Cow position:chr18:33093004-33092484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 195

               
               
               Conread position:950-1475
               
               
               Cow position:chr18:41197509-41198037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 0

               
               
               Conread position:950-1521
               
               
               Cow position:chr18:33064164-33063590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 120

               
               
               Conread position:950-1521
               
               
               Cow position:chr18:40075041-40075615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 379

               
               
               Conread position:950-1522
               
               
               Cow position:chr18:56391413-56390838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:337
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):173, 278

               
               
               Conread position:950-1525
               
               
               Cow position:chr18:56493775-56494356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 215

               
               
               Conread position:954-1523
               
               
               Cow position:chr18:50083304-50083876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:349
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):169, 350

               
               
               Conread position:955-1515
               
               
               Cow position:chr18:49022669-49023232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:338
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):11, 26

               
               
               Conread position:955-1515
               
               
               Cow position:chr18:53610276-53609713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 360

               
               
               Conread position:955-1515
               
               
               Cow position:chr18:55497599-55497036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 286

               
               
               Conread position:955-1521
               
               
               Cow position:chr18:55017903-55018472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:351
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):168, 212

               
               
               Conread position:955-1523
               
               
               Cow position:chr18:43093728-43093160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 54

               
               
               Conread position:955-1523
               
               
               Cow position:chr18:56128480-56129051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 358

               
               
               Conread position:955-1524
               
               
               Cow position:chr18:54979583-54980155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:341
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):168, 273

               
               
               Conread position:955-1527
               
               
               Cow position:chr18:50031043-50030468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:356
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):163, 107

               
               
               Conread position:956-1438
               
               
               Cow position:chr18:53586471-53585986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:305
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):100, 93

               
               
               Conread position:956-1473
               
               
               Cow position:chr18:40306445-40306965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 281

               
               
               Conread position:956-1478
               
               
               Cow position:chr18:52012083-52011558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 327

               
               
               Conread position:956-1492
               
               
               Cow position:chr18:53635516-53634978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 481

               
               
               Conread position:956-1506
               
               
               Cow position:chr18:42693856-42693303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:341
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):98, 105

               
               
               Conread position:956-1506
               
               
               Cow position:chr18:56128649-56129201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 479

               
               
               Conread position:956-1512
               
               
               Cow position:chr18:56128565-56129124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 275

               
               
               Conread position:956-1515
               
               
               Cow position:chr18:43175659-43175106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:335
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):30, 43

               
               
               Conread position:956-1515
               
               
               Cow position:chr18:55008667-55009229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:338
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):23, 35

               
               
               Conread position:956-1521
               
               
               Cow position:chr18:53635600-53635031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 279

               
               
               Conread position:956-1523
               
               
               Cow position:chr18:33064914-33064344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 195

               
               
               Conread position:956-1523
               
               
               Cow position:chr18:40306697-40307267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:350
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):168, 348

               
               
               Conread position:956-1523
               
               
               Cow position:chr18:49032770-49032200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 154

               
               
               Conread position:956-1523
               
               
               Cow position:chr18:49033358-49032788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 525

               
               
               Conread position:956-1523
               
               
               Cow position:chr18:52012167-52011597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 370

               
               
               Conread position:957-1446
               
               
               Cow position:chr18:43094214-43093729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:295
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):165, 8

               
               
               Conread position:957-1523
               
               
               Cow position:chr18:55497681-55497112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 356

               
               
               Conread position:957-1525
               
               
               Cow position:chr18:44254030-44253465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:348
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):95, 111

               
               
               Conread position:957-1525
               
               
               Cow position:chr18:54979753-54980324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:356
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):108, 103

               
               
               Conread position:959-1473
               
               
               Cow position:chr18:51765971-51765454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:310
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):165, 188

               
               
               Conread position:959-1474
               
               
               Cow position:chr18:40306616-40307134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:318
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):164, 0

               
               
               Conread position:959-1514
               
               
               Cow position:chr18:49022339-49022895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:342
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):165, 243

               
               
               Conread position:959-1519
               
               
               Cow position:chr18:42837909-42837345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 145

               
               
               Conread position:959-1521
               
               
               Cow position:chr18:55017823-55018388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:346
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):140, 154

               
               
               Conread position:959-1523
               
               
               Cow position:chr18:40324521-40323954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:350
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):162, 186

               
               
               Conread position:959-1524
               
               
               Cow position:chr18:50048944-50048376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:351
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):15, 28

               
               
               Conread position:959-1525
               
               
               Cow position:chr18:50022376-50021804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:344
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):159, 271

               
               
               Conread position:961-1523
               
               
               Cow position:chr18:43167653-43168218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:345
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):61, 43

               
               
               Conread position:965-1503
               
               
               Cow position:chr18:50059674-50059133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:332
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):158, 263

               
               
               Conread position:965-1523
               
               
               Cow position:chr18:51400229-51400790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 98

               
               
               Conread position:970-1523
               
               
               Cow position:chr18:42960345-42959789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:339
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):85, 95

               
               
               Conread position:977-1504
               
               
               Cow position:chr18:51874024-51874547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:319
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):279, 144

               
               
               Conread position:982-1523
               
               
               Cow position:chr18:51400161-51400706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 82

               
               
               Conread position:989-1523
               
               
               Cow position:chr18:41949375-41948838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 115

               
               
               Conread position:996-1505
               
               
               Cow position:chr18:42985580-42985068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:318
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):103, 109

               
               
               Conread position:996-1525
               
               
               Cow position:chr18:40075003-40075535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:326
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):103, 112

               
               
               Conread position:997-1523
               
               
               Cow position:chr18:52446921-52447450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:312
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):128, 153

               
               
               Conread position:998-1478
               
               
               Cow position:chr18:40086703-40086217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:297
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):126, 21

               
               
               Conread position:998-1525
               
               
               Cow position:chr18:55008459-55008987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:322
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):94, 78

               
               
               Conread position:998-1525
               
               
               Cow position:chr18:55017778-55018308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:327
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):94, 73

               
               
               Conread position:998-1525
               
               
               Cow position:chr18:56391449-56390921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:325
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):54, 62

               
               
               Conread position:1003-1523
               
               
               Cow position:chr18:44154467-44153942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:326
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):60, 64

               
               
               Conread position:1004-1521
               
               
               Cow position:chr18:54993058-54993580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:321
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):22, 143

               
               
               Conread position:1004-1524
               
               
               Cow position:chr18:22634628-22635151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:306
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):120, 226

               
               
               Conread position:1010-1473
               
               
               Cow position:chr18:53525686-53526152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:292
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):113, 154

               
               
               Conread position:1010-1514
               
               
               Cow position:chr18:51765416-51764909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:305
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):44, 60

               
               
               Conread position:1010-1515
               
               
               Cow position:chr18:55067116-55066608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 144

               
               
               Conread position:1010-1522
               
               
               Cow position:chr18:56391521-56391006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:305
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):113, 193

               
               
               Conread position:1010-1523
               
               
               Cow position:chr18:43094000-43093496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:313
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):113, 137

               
               
               Conread position:1010-1523
               
               
               Cow position:chr18:56128451-56128967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 225

               
               
               Conread position:1010-1524
               
               
               Cow position:chr18:54967533-54968045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:311
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):89, 175

               
               
               Conread position:1010-1524
               
               
               Cow position:chr18:54992730-54993247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:318
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):63, 79

               
               
               Conread position:1010-1525
               
               
               Cow position:chr18:54979470-54979988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:328
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):99, 66

               
               
               Conread position:1011-1523
               
               
               Cow position:chr18:42744722-42744207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:309
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:1013-1505
               
               
               Cow position:chr18:44253894-44253399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:300
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):86, 97

               
               
               Conread position:1014-1446
               
               
               Cow position:chr18:14453290-14452855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:279
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):110, 216

               
               
               Conread position:1014-1505
               
               
               Cow position:chr18:42827402-42827896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:308
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):109, 185

               
               
               Conread position:1015-1520
               
               
               Cow position:chr18:53587084-53586576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 138

               
               
               Conread position:1016-1515
               
               
               Cow position:chr18:42724840-42724338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:304
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):96, 161

               
               
               Conread position:1019-1523
               
               
               Cow position:chr18:56330184-56329677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 25

               
               
               Conread position:1019-1525
               
               
               Cow position:chr18:54966952-54967463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:324
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):8, 54

               
               
               Conread position:1033-1521
               
               
               Cow position:chr18:40306186-40306677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:311
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):52, 76

               
               
               Conread position:1034-1521
               
               
               Cow position:chr18:54979578-54980068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:307
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):91, 122

               
               
               Conread position:1043-1523
               
               
               Cow position:chr18:53610524-53610041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:309
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):19, 40

               
               
               Conread position:1043-1525
               
               
               Cow position:chr18:44398412-44397927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 286

               
               
               Conread position:1049-1523
               
               
               Cow position:chr18:50059674-50059197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 172

               
               
               Conread position:1080-1521
               
               
               Cow position:chr18:40074919-40075363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:285
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):45, 65

               
               
               Conread position:1092-1503
               
               
               Cow position:chr18:43048734-43048322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:279
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):32, 7

               
               
               Conread position:1119-1523
               
               
               Cow position:chr18:50022381-50021974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:253
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):81, 76

               
               
               Conread position:1121-1515
               
               
               Cow position:chr18:44254031-44253641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):92, 113

               
               
               Conread position:1122-1474
               
               
               Cow position:chr18:49021676-49022028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):126, 105

               
               
               Conread position:1122-1515
               
               
               Cow position:chr18:33092997-33092604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):194, 188

               
               
               Conread position:1122-1523
               
               
               Cow position:chr18:33093081-33092680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 178

               
               
               Conread position:1122-1523
               
               
               Cow position:chr18:41197516-41197917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 179

               
               
               Conread position:1122-1523
               
               
               Cow position:chr18:51752310-51751909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:250
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):8, 20

               
               
               Conread position:1122-1523
               
               
               Cow position:chr18:56247788-56247393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:240
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):269, 0

               
               
               Conread position:1124-1515
               
               
               Cow position:chr18:14453261-14452870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:253
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):115, 105

               
               
               Conread position:1124-1521
               
               
               Cow position:chr18:42827431-42827828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:242
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):112, 99

               
               
               Conread position:1124-1521
               
               
               Cow position:chr18:51812773-51812376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:242
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):184, 177

               
               
               Conread position:1124-1522
               
               
               Cow position:chr18:53525719-53526117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):27, 40

               
               
               Conread position:1124-1523
               
               
               Cow position:chr18:40324857-40324458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):111, 103

               
               
               Conread position:1124-1523
               
               
               Cow position:chr18:51368576-51368176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):30, 348

               
               
               Conread position:1124-1524
               
               
               Cow position:chr18:42724561-42724161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):160, 155

               
               
               Conread position:1127-1521
               
               
               Cow position:chr18:1417864-1418258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:251
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):110, 84

               
               
               Conread position:1127-1525
               
               
               Cow position:chr18:42790994-42791392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):114, 97

               
               
               Conread position:1131-1523
               
               
               Cow position:chr18:42724806-42724414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):127, 98

               
               
               Conread position:1149-1523
               
               
               Cow position:chr18:50245962-50246335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):171, 14

               
               
               Conread position:1152-1467
               
               
               Cow position:chr18:54992707-54993022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):166, 149

               
               
               Conread position:1152-1491
               
               
               Cow position:chr18:49021622-49021961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):73, 78

               
               
               Conread position:1161-1523
               
               
               Cow position:chr18:42675341-42674979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):148, 140

               
               
               Conread position:1162-1523
               
               
               Cow position:chr18:43023090-43022729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):73, 86

               
               
               Conread position:1162-1523
               
               
               Cow position:chr18:44184905-44184544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):64, 76

               
               
               Conread position:1163-1524
               
               
               Cow position:chr18:53498035-53498402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):142, 138

               
               
               Conread position:1164-1524
               
               
               Cow position:chr18:22634623-22634983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):160, 137

               
               
               Conread position:1172-1474
               
               
               Cow position:chr18:56267469-56267167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:1172-1515
               
               
               Cow position:chr18:43048737-43048394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1173-1514
               
               
               Cow position:chr18:55067118-55066777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:228
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):144, 128

               
               
               Conread position:1175-1477
               
               
               Cow position:chr18:56248165-56247864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):62, 51

               
               
               Conread position:1181-1515
               
               
               Cow position:chr18:42837936-42837602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):54, 61

               
               
               Conread position:1182-1525
               
               
               Cow position:chr18:14454017-14453678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):57, 11

               
               
               Conread position:1184-1521
               
               
               Cow position:chr18:54992655-54992992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):25, 16

               
               
               Conread position:1188-1521
               
               
               Cow position:chr18:41197499-41197831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):120, 7

               
               
               Conread position:1189-1477
               
               
               Cow position:chr18:53610543-53610255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):119, 111

               
               
               Conread position:1190-1521
               
               
               Cow position:chr18:14453279-14452948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):118, 111

               
               
               Conread position:1190-1523
               
               
               Cow position:chr18:49033373-49033040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):51, 44

               
               
               Conread position:1190-1523
               
               
               Cow position:chr18:50083291-50083624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):58, 53

               
               
               Conread position:1192-1523
               
               
               Cow position:chr18:55523319-55523650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):139, 133

               
               
               Conread position:1193-1474
               
               
               Cow position:chr18:40306181-40306462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):139, 121

               
               
               Conread position:1193-1515
               
               
               Cow position:chr18:43120395-43120073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):47, 36

               
               
               Conread position:1193-1523
               
               
               Cow position:chr18:42985548-42985218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):296, 285

               
               
               Conread position:1197-1474
               
               
               Cow position:chr18:55497690-55497413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1197-1524
               
               
               Cow position:chr18:53509254-53509581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):113, 120

               
               
               Conread position:1197-1526
               
               
               Cow position:chr18:53525708-53526035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):113, 120

               
               
               Conread position:1198-1524
               
               
               Cow position:chr18:53587066-53586740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):127, 135

               
               
               Conread position:1199-1514
               
               
               Cow position:chr18:56128055-56128370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1199-1523
               
               
               Cow position:chr18:44398421-44398097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):36, 28

               
               
               Conread position:1199-1525
               
               
               Cow position:chr18:42827422-42827748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):39, 31

               
               
               Conread position:1208-1515
               
               
               Cow position:chr18:43120296-43119989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):20, 34

               
               
               Conread position:1238-1523
               
               
               Cow position:chr18:42837963-42837678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1238-1523
               
               
               Cow position:chr18:44184913-44184628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):217, 223

               
               
               Conread position:1251-1517
               
               
               Cow position:chr18:42744731-42744465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1254-1521
               
               
               Cow position:chr18:14454031-14453764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):64, 55

               
               
               Conread position:1254-1523
               
               
               Cow position:chr18:42675332-42675063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1254-1523
               
               
               Cow position:chr18:43048739-43048470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):78, 56

               
               
               Conread position:1254-1523
               
               
               Cow position:chr18:51969414-51969681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):235, 205

               
               
               Conread position:1254-1525
               
               
               Cow position:chr18:33093117-33092846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:1258-1518
               
               
               Cow position:chr18:56248166-56247906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1259-1523
               
               
               Cow position:chr18:55067116-55066852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):73, 42

               
               
               Conread position:1259-1525
               
               
               Cow position:chr18:53509232-53509498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):24, 17

               
               
               Conread position:1259-1525
               
               
               Cow position:chr18:53525686-53525952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):24, 17

               
               
               Conread position:1263-1521
               
               
               Cow position:chr18:14453290-14453032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):53, 38

               
               
               Conread position:1263-1525
               
               
               Cow position:chr18:42827402-42827664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):55, 38

               
               
               Conread position:1267-1523
               
               
               Cow position:chr18:56330185-56329929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):209, 231

               
               
               Conread position:1269-1521
               
               
               Cow position:chr18:49033378-49033126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):43, 32

               
               
               Conread position:1274-1523
               
               
               Cow position:chr18:41197500-41197749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1274-1523
               
               
               Cow position:chr18:53610542-53610293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):40, 27

               
               
               Conread position:1277-1521
               
               
               Cow position:chr18:40306181-40306425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):55, 50

               
               
               Conread position:1283-1523
               
               
               Cow position:chr18:53636110-53635870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):49, 34

               
               
               Conread position:1283-1523
               
               
               Cow position:chr18:56128055-56128295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):47, 18

               
               
               Conread position:1336-1523
               
               
               Cow position:chr18:43048741-43048554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):151, 161

               
               
               Conread position:1353-1523
               
               
               Cow position:chr18:49033378-49033208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:236-499
               
               
               Cow position:chr19:23639991-23640254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):207, 217

               
               
               Conread position:236-503
               
               
               Cow position:chr19:14951296-14951029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:805-1408
               
               
               Cow position:chr19:14948593-14947988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:373
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):35, 40

               
               
               Conread position:920-1475
               
               
               Cow position:chr19:20677519-20678077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:342
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):78, 68

               
               
               Conread position:928-1358
               
               
               Cow position:chr19:14959246-14958819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:265
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):197, 128

               
               
               Conread position:928-1523
               
               
               Cow position:chr19:23649298-23649896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:362
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):193, 313

               
               
               Conread position:930-1186
               
               
               Cow position:chr19:23597447-23597706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):191, 217

               
               
               Conread position:930-1438
               
               
               Cow position:chr19:14940574-14941085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 0

               
               
               Conread position:930-1477
               
               
               Cow position:chr19:20677613-20678163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 312

               
               
               Conread position:930-1506
               
               
               Cow position:chr19:23596946-23597522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 86

               
               
               Conread position:930-1514
               
               
               Cow position:chr19:23649552-23650139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 174

               
               
               Conread position:930-1519
               
               
               Cow position:chr19:14960309-14959720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 114

               
               
               Conread position:930-1523
               
               
               Cow position:chr19:20678033-20678629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 179

               
               
               Conread position:930-1523
               
               
               Cow position:chr19:23614186-23614782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:366
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):193, 301

               
               
               Conread position:930-1523
               
               
               Cow position:chr19:23649468-23650064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 300

               
               
               Conread position:930-1526
               
               
               Cow position:chr19:14960477-14959880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 326

               
               
               Conread position:931-1523
               
               
               Cow position:chr19:23596863-23597455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 171

               
               
               Conread position:932-1272
               
               
               Cow position:chr19:23614776-23615117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):184, 328

               
               
               Conread position:932-1350
               
               
               Cow position:chr19:23650058-23650479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:258
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):192, 0

               
               
               Conread position:932-1377
               
               
               Cow position:chr19:23597281-23597730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 296

               
               
               Conread position:932-1424
               
               
               Cow position:chr19:23614608-23615103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:303
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):178, 153

               
               
               Conread position:932-1445
               
               
               Cow position:chr19:20635549-20635033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 299

               
               
               Conread position:932-1500
               
               
               Cow position:chr19:20677699-20678270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:351
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):189, 247

               
               
               Conread position:932-1506
               
               
               Cow position:chr19:23614524-23615101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 297

               
               
               Conread position:932-1513
               
               
               Cow position:chr19:14940492-14941076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 173

               
               
               Conread position:932-1515
               
               
               Cow position:chr19:23649890-23650476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 0

               
               
               Conread position:932-1515
               
               
               Cow position:chr19:43570224-43569642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:357
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):191, 297

               
               
               Conread position:932-1521
               
               
               Cow position:chr19:14939988-14940580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 297

               
               
               Conread position:932-1521
               
               
               Cow position:chr19:20635633-20635039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 296

               
               
               Conread position:932-1521
               
               
               Cow position:chr19:23613516-23614108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 297

               
               
               Conread position:932-1521
               
               
               Cow position:chr19:23614440-23615032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:351
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):192, 458

               
               
               Conread position:932-1522
               
               
               Cow position:chr19:23597113-23597706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 309

               
               
               Conread position:932-1523
               
               
               Cow position:chr19:14940240-14940834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 294

               
               
               Conread position:932-1523
               
               
               Cow position:chr19:14959569-14958990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 258

               
               
               Conread position:932-1523
               
               
               Cow position:chr19:14959889-14959311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:374
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):130, 76

               
               
               Conread position:932-1523
               
               
               Cow position:chr19:23613684-23614278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 153

               
               
               Conread position:932-1523
               
               
               Cow position:chr19:23613768-23614362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 246

               
               
               Conread position:932-1523
               
               
               Cow position:chr19:23614020-23614614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 370

               
               
               Conread position:932-1523
               
               
               Cow position:chr19:23614104-23614698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:356
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):192, 235

               
               
               Conread position:932-1523
               
               
               Cow position:chr19:23649638-23650232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 540

               
               
               Conread position:932-1525
               
               
               Cow position:chr19:23649722-23650318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 372

               
               
               Conread position:932-1526
               
               
               Cow position:chr19:14959485-14958903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:353
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):306, 165

               
               
               Conread position:933-1473
               
               
               Cow position:chr19:20678120-20678663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 49

               
               
               Conread position:934-1487
               
               
               Cow position:chr19:23613434-23613990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 412

               
               
               Conread position:934-1523
               
               
               Cow position:chr19:23613350-23613942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 370

               
               
               Conread position:934-1523
               
               
               Cow position:chr19:23649388-23649980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 303

               
               
               Conread position:935-1434
               
               
               Cow position:chr19:23649975-23650479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 27

               
               
               Conread position:935-1521
               
               
               Cow position:chr19:23614275-23614864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 186

               
               
               Conread position:949-1445
               
               
               Cow position:chr19:23597214-23597713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 0

               
               
               Conread position:949-1470
               
               
               Cow position:chr19:14959636-14959121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:320
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):26, 32

               
               
               Conread position:949-1525
               
               
               Cow position:chr19:14960374-14959799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 225

               
               
               Conread position:955-1523
               
               
               Cow position:chr19:14940431-14941002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 282

               
               
               Conread position:955-1523
               
               
               Cow position:chr19:23597052-23597623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 110

               
               
               Conread position:956-1523
               
               
               Cow position:chr19:14940180-14940750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 272

               
               
               Conread position:959-1523
               
               
               Cow position:chr19:43570278-43569716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:353
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):164, 20

               
               
               Conread position:997-1515
               
               
               Cow position:chr19:23649283-23649804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:1003-1467
               
               
               Cow position:chr19:14948479-14948013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:284
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):96, 77

               
               
               Conread position:1004-1434
               
               
               Cow position:chr19:14959254-14958827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:268
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):235, 121

               
               
               Conread position:1122-1522
               
               
               Cow position:chr19:14959217-14958823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:256
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):375, 98

               
               
               Conread position:1124-1523
               
               
               Cow position:chr19:20635606-20635207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:249
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):184, 178

               
               
               Conread position:1124-1525
               
               
               Cow position:chr19:14940015-14940416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):363, 374

               
               
               Conread position:1130-1512
               
               
               Cow position:chr19:14948433-14948052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:240
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):202, 30

               
               
               Conread position:1175-1523
               
               
               Cow position:chr19:20635639-20635291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):337, 328

               
               
               Conread position:1176-1523
               
               
               Cow position:chr19:23649297-23649644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):125, 129

               
               
               Conread position:1177-1521
               
               
               Cow position:chr19:20677527-20677871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):71, 57

               
               
               Conread position:1190-1523
               
               
               Cow position:chr19:14939997-14940330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:211
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):65, 60

               
               
               Conread position:1194-1523
               
               
               Cow position:chr19:14948453-14948125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):44, 34

               
               
               Conread position:1255-1523
               
               
               Cow position:chr19:23649292-23649560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):223, 231

               
               
               Conread position:248-425
               
               
               Cow position:chr2:84896566-84896389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):80, 72

               
               
               Conread position:248-425
               
               
               Cow position:chr2:86507719-86507543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):168, 0

               
               
               Conread position:920-1485
               
               
               Cow position:chr2:78755405-78755970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:330
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):173, 108

               
               
               Conread position:929-1398
               
               
               Cow position:chr2:48689547-48689075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:286
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):32, 19

               
               
               Conread position:930-1477
               
               
               Cow position:chr2:86465598-86466148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:339
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):63, 51

               
               
               Conread position:930-1501
               
               
               Cow position:chr2:5874682-5874108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:348
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):192, 226

               
               
               Conread position:930-1506
               
               
               Cow position:chr2:78755748-78756326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:349
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):49, 60

               
               
               Conread position:930-1515
               
               
               Cow position:chr2:78754912-78755499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 222

               
               
               Conread position:930-1515
               
               
               Cow position:chr2:82799858-82800446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 0

               
               
               Conread position:930-1521
               
               
               Cow position:chr2:78755164-78755754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:364
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):193, 172

               
               
               Conread position:930-1523
               
               
               Cow position:chr2:5875018-5874422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:370
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):107, 113

               
               
               Conread position:930-1523
               
               
               Cow position:chr2:78754828-78755423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 298

               
               
               Conread position:932-1468
               
               
               Cow position:chr2:86465768-86466305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:317
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):191, 431

               
               
               Conread position:932-1473
               
               
               Cow position:chr2:86465348-86465892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:327
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):191, 0

               
               
               Conread position:932-1512
               
               
               Cow position:chr2:5874932-5874349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:360
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):161, 144

               
               
               Conread position:932-1515
               
               
               Cow position:chr2:82799524-82800110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 0

               
               
               Conread position:932-1521
               
               
               Cow position:chr2:82799776-82800368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 0

               
               
               Conread position:932-1523
               
               
               Cow position:chr2:5875100-5874506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:368
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:932-1523
               
               
               Cow position:chr2:82799608-82800202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 401

               
               
               Conread position:932-1523
               
               
               Cow position:chr2:82799692-82800286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 383

               
               
               Conread position:947-1517
               
               
               Cow position:chr2:82799455-82800028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 294

               
               
               Conread position:949-1476
               
               
               Cow position:chr2:86465113-86465642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 356

               
               
               Conread position:949-1523
               
               
               Cow position:chr2:78755517-78756093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:335
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):165, 292

               
               
               Conread position:950-1521
               
               
               Cow position:chr2:5874830-5874256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:348
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):114, 118

               
               
               Conread position:954-1525
               
               
               Cow position:chr2:86465286-86465860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 322

               
               
               Conread position:955-1523
               
               
               Cow position:chr2:78755857-78756425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:342
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):165, 179

               
               
               Conread position:956-1523
               
               
               Cow position:chr2:86465036-86465606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:351
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):81, 87

               
               
               Conread position:959-1467
               
               
               Cow position:chr2:78754203-78754711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:302
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):171, 240

               
               
               Conread position:959-1523
               
               
               Cow position:chr2:86465543-86466110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:341
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):47, 52

               
               
               Conread position:997-1506
               
               
               Cow position:chr2:78754811-78755323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:309
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):125, 232

               
               
               Conread position:1020-1465
               
               
               Cow position:chr2:5875180-5874732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:259
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:1043-1525
               
               
               Cow position:chr2:82799467-82799952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:1124-1474
               
               
               Cow position:chr2:48689516-48689167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:1166-1473
               
               
               Cow position:chr2:48689391-48689085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):150, 144

               
               
               Conread position:1169-1519
               
               
               Cow position:chr2:48689558-48689205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:236
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):7, 160

               
               
               Conread position:1194-1525
               
               
               Cow position:chr2:86465109-86465440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):42, 31

               
               
               Conread position:242-498
               
               
               Cow position:chr21:34231116-34230859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):249, 0

               
               
               Conread position:927-1505
               
               
               Cow position:chr21:12608519-12607936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 301

               
               
               Conread position:930-1224
               
               
               Cow position:chr21:34222888-34222591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):191, 0

               
               
               Conread position:930-1525
               
               
               Cow position:chr21:12608766-12608168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 209

               
               
               Conread position:932-1504
               
               
               Cow position:chr21:12659418-12659993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 82

               
               
               Conread position:932-1523
               
               
               Cow position:chr21:12608596-12608002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 266

               
               
               Conread position:932-1523
               
               
               Cow position:chr21:12658830-12659424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 126

               
               
               Conread position:932-1523
               
               
               Cow position:chr21:12658914-12659508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 0

               
               
               Conread position:932-1523
               
               
               Cow position:chr21:12658998-12659592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 126

               
               
               Conread position:932-1523
               
               
               Cow position:chr21:12659334-12659928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 126

               
               
               Conread position:932-1523
               
               
               Cow position:chr21:34223135-34222544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:375
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):28, 22

               
               
               Conread position:932-1524
               
               
               Cow position:chr21:12608848-12608253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 292

               
               
               Conread position:935-1449
               
               
               Cow position:chr21:12659505-12660022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 123

               
               
               Conread position:944-1440
               
               
               Cow position:chr21:34223042-34222543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 484

               
               
               Conread position:950-1474
               
               
               Cow position:chr21:12608914-12608387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:530
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 291

               
               
               Conread position:950-1523
               
               
               Cow position:chr21:12659100-12659676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 108

               
               
               Conread position:989-1523
               
               
               Cow position:chr21:12658803-12659340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 25

               
               
               Conread position:1043-1522
               
               
               Cow position:chr21:12608905-12608423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:1124-1523
               
               
               Cow position:chr21:34223027-34222628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1129-1525
               
               
               Cow position:chr21:34223102-34222710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 10

               
               
               Conread position:1211-1523
               
               
               Cow position:chr21:12608901-12608590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):160, 18

               
               
               Conread position:235-498
               
               
               Cow position:chr22:12537799-12538062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:235-505
               
               
               Cow position:chr22:12443182-12442912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:236-508
               
               
               Cow position:chr22:12485096-12484824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:920-1523
               
               
               Cow position:chr22:46654167-46654773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 123

               
               
               Conread position:929-1207
               
               
               Cow position:chr22:12419301-12419020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):108, 114

               
               
               Conread position:930-1515
               
               
               Cow position:chr22:12476225-12475637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 552

               
               
               Conread position:930-1515
               
               
               Cow position:chr22:12499034-12499622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 400

               
               
               Conread position:930-1521
               
               
               Cow position:chr22:12385504-12384908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 47

               
               
               Conread position:930-1521
               
               
               Cow position:chr22:12458528-12457934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 0

               
               
               Conread position:930-1523
               
               
               Cow position:chr22:12385588-12384990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 139

               
               
               Conread position:931-1523
               
               
               Cow position:chr22:12432079-12431484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:361
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):193, 297

               
               
               Conread position:931-1523
               
               
               Cow position:chr22:12432499-12431904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 309

               
               
               Conread position:932-1123
               
               
               Cow position:chr22:12418609-12418419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):183, 0

               
               
               Conread position:932-1358
               
               
               Cow position:chr22:12499540-12499969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:274
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):167, 173

               
               
               Conread position:932-1391
               
               
               Cow position:chr22:14468057-14468519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:295
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):191, 210

               
               
               Conread position:932-1391
               
               
               Cow position:chr22:14468141-14468603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:277
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):141, 127

               
               
               Conread position:932-1445
               
               
               Cow position:chr22:12475803-12475287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 178

               
               
               Conread position:932-1446
               
               
               Cow position:chr22:12431490-12430973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 0

               
               
               Conread position:932-1447
               
               
               Cow position:chr22:11640940-11641458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:320
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):193, 397

               
               
               Conread position:932-1454
               
               
               Cow position:chr22:14430400-14430925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:325
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):59, 44

               
               
               Conread position:932-1462
               
               
               Cow position:chr22:12431238-12430705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:323
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):167, 173

               
               
               Conread position:932-1473
               
               
               Cow position:chr22:12499372-12499916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 0

               
               
               Conread position:932-1473
               
               
               Cow position:chr22:46654095-46654639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:328
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):189, 0

               
               
               Conread position:932-1474
               
               
               Cow position:chr22:12399678-12399133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 173

               
               
               Conread position:932-1515
               
               
               Cow position:chr22:11640856-11641442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 314

               
               
               Conread position:932-1521
               
               
               Cow position:chr22:12399342-12398750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 321

               
               
               Conread position:932-1521
               
               
               Cow position:chr22:12476307-12475715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 128

               
               
               Conread position:932-1521
               
               
               Cow position:chr22:12498952-12499544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 128

               
               
               Conread position:932-1523
               
               
               Cow position:chr22:11640772-11641366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 299

               
               
               Conread position:932-1523
               
               
               Cow position:chr22:12399426-12398832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 398

               
               
               Conread position:932-1523
               
               
               Cow position:chr22:12432162-12431568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 0

               
               
               Conread position:932-1523
               
               
               Cow position:chr22:12432414-12431820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:358
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):193, 372

               
               
               Conread position:932-1523
               
               
               Cow position:chr22:14429644-14430238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:360
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):123, 133

               
               
               Conread position:932-1523
               
               
               Cow position:chr22:14430232-14430826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:348
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):94, 44

               
               
               Conread position:932-1523
               
               
               Cow position:chr22:14430316-14430910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:362
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):66, 57

               
               
               Conread position:932-1523
               
               
               Cow position:chr22:46654263-46654858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:355
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):189, 295

               
               
               Conread position:932-1525
               
               
               Cow position:chr22:12399762-12399166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 398

               
               
               Conread position:932-1528
               
               
               Cow position:chr22:12458358-12457759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 372

               
               
               Conread position:933-1515
               
               
               Cow position:chr22:12431741-12431156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 372

               
               
               Conread position:934-1270
               
               
               Cow position:chr22:12418775-12418434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):189, 307

               
               
               Conread position:934-1515
               
               
               Cow position:chr22:12431908-12431324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 163

               
               
               Conread position:935-1515
               
               
               Cow position:chr22:12498869-12499454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 551

               
               
               Conread position:936-1523
               
               
               Cow position:chr22:12475967-12475377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 231

               
               
               Conread position:936-1523
               
               
               Cow position:chr22:12499292-12499882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 229

               
               
               Conread position:936-1525
               
               
               Cow position:chr22:12458606-12458016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 180

               
               
               Conread position:938-1521
               
               
               Cow position:chr22:12399840-12399254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 227

               
               
               Conread position:943-1476
               
               
               Cow position:chr22:14442137-14442670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:324
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):182, 418

               
               
               Conread position:943-1515
               
               
               Cow position:chr22:11640615-11641190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 54

               
               
               Conread position:944-1440
               
               
               Cow position:chr22:12431142-12430643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:311
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):177, 205

               
               
               Conread position:944-1444
               
               
               Cow position:chr22:11666457-11666960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:319
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):133, 124

               
               
               Conread position:944-1515
               
               
               Cow position:chr22:12431394-12430820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 161

               
               
               Conread position:944-1523
               
               
               Cow position:chr22:11640700-11641282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 132

               
               
               Conread position:944-1529
               
               
               Cow position:chr22:11701111-11701698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 164

               
               
               Conread position:949-1474
               
               
               Cow position:chr22:12419012-12418484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 291

               
               
               Conread position:949-1523
               
               
               Cow position:chr22:46654028-46654605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 93

               
               
               Conread position:950-1442
               
               
               Cow position:chr22:12418927-12418433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 484

               
               
               Conread position:950-1474
               
               
               Cow position:chr22:14467991-14468518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:324
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):175, 445

               
               
               Conread position:950-1477
               
               
               Cow position:chr22:12475869-12475339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 282

               
               
               Conread position:950-1477
               
               
               Cow position:chr22:14442060-14442590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:314
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):173, 224

               
               
               Conread position:950-1515
               
               
               Cow position:chr22:12476373-12475805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 536

               
               
               Conread position:955-1523
               
               
               Cow position:chr22:12431299-12430728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 366

               
               
               Conread position:959-1523
               
               
               Cow position:chr22:12431799-12431232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 194

               
               
               Conread position:959-1523
               
               
               Cow position:chr22:14429839-14430406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:360
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):166, 196

               
               
               Conread position:961-1527
               
               
               Cow position:chr22:46653956-46654526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:333
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):160, 362

               
               
               Conread position:982-1523
               
               
               Cow position:chr22:12476425-12475881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:327
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):139, 322

               
               
               Conread position:982-1523
               
               
               Cow position:chr22:12498834-12499378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:329
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):49, 57

               
               
               Conread position:995-1523
               
               
               Cow position:chr22:12419319-12418771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:1003-1523
               
               
               Cow position:chr22:12458623-12458100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:1034-1505
               
               
               Cow position:chr22:11666463-11666937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:305
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):91, 115

               
               
               Conread position:1034-1523
               
               
               Cow position:chr22:12419011-12418519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:1043-1515
               
               
               Cow position:chr22:12399897-12399428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:292
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:1111-1523
               
               
               Cow position:chr22:11666456-11666871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:269
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):13, 118

               
               
               Conread position:1119-1515
               
               
               Cow position:chr22:12544601-12544997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):206, 193

               
               
               Conread position:1124-1523
               
               
               Cow position:chr22:12399897-12399504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 57

               
               
               Conread position:1148-1523
               
               
               Cow position:chr22:11640655-11641030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:245
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):160, 148

               
               
               Conread position:1160-1523
               
               
               Cow position:chr22:12498847-12499210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):325, 303

               
               
               Conread position:1164-1523
               
               
               Cow position:chr22:12458627-12458268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):70, 63

               
               
               Conread position:1175-1480
               
               
               Cow position:chr22:14468051-14468356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):133, 127

               
               
               Conread position:1190-1391
               
               
               Cow position:chr22:12545653-12545854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):58, 52

               
               
               Conread position:1193-1477
               
               
               Cow position:chr22:12419017-12418733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1193-1523
               
               
               Cow position:chr22:14467985-14468315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):112, 108

               
               
               Conread position:1256-1525
               
               
               Cow position:chr22:12432423-12432154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:235-511
               
               
               Cow position:chr23:24637117-24637386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:235-512
               
               
               Cow position:chr23:24538699-24538422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:235-512
               
               
               Cow position:chr23:24622909-24623186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):254, 260

               
               
               Conread position:235-512
               
               
               Cow position:chr23:24648181-24648458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:235-512
               
               
               Cow position:chr23:25617607-25617884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:235-512
               
               
               Cow position:chr23:25691584-25691307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):256, 263

               
               
               Conread position:236-496
               
               
               Cow position:chr23:24568090-24567830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:244-512
               
               
               Cow position:chr23:25658240-25658508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:244-512
               
               
               Cow position:chr23:25730697-25730429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:248-510
               
               
               Cow position:chr23:24630218-24630472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:249-512
               
               
               Cow position:chr23:25703107-25702844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:254-483
               
               
               Cow position:chr23:24527358-24527131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 107

               
               
               Conread position:920-1345
               
               
               Cow position:chr23:25724141-25723713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:276
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):57, 45

               
               
               Conread position:920-1513
               
               
               Cow position:chr23:25698669-25698074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 14

               
               
               Conread position:927-1512
               
               
               Cow position:chr23:24536052-24535464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 150

               
               
               Conread position:927-1515
               
               
               Cow position:chr23:25660144-25660735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 242

               
               
               Conread position:928-1524
               
               
               Cow position:chr23:24639294-24639893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 135

               
               
               Conread position:929-1523
               
               
               Cow position:chr23:25626025-25626619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 324

               
               
               Conread position:930-1376
               
               
               Cow position:chr23:24639632-24640081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 316

               
               
               Conread position:930-1445
               
               
               Cow position:chr23:24639548-24640066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 298

               
               
               Conread position:930-1523
               
               
               Cow position:chr23:25626278-25626871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 300

               
               
               Conread position:930-1524
               
               
               Cow position:chr23:25626194-25626788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 387

               
               
               Conread position:932-1290
               
               
               Cow position:chr23:24626390-24626749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):191, 296

               
               
               Conread position:932-1299
               
               
               Cow position:chr23:25626697-25627069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):189, 296

               
               
               Conread position:932-1433
               
               
               Cow position:chr23:25660233-25660737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 0

               
               
               Conread position:932-1441
               
               
               Cow position:chr23:24535963-24535451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:318
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):192, 296

               
               
               Conread position:932-1441
               
               
               Cow position:chr23:24547164-24546652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 173

               
               
               Conread position:932-1505
               
               
               Cow position:chr23:24547248-24546672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 305

               
               
               Conread position:932-1523
               
               
               Cow position:chr23:24560808-24560214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 79

               
               
               Conread position:932-1523
               
               
               Cow position:chr23:24639466-24640060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 298

               
               
               Conread position:932-1525
               
               
               Cow position:chr23:25626112-25626705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:358
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):192, 307

               
               
               Conread position:933-1513
               
               
               Cow position:chr23:24522569-24521971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:365
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):188, 373

               
               
               Conread position:934-1525
               
               
               Cow position:chr23:24560890-24560296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 296

               
               
               Conread position:935-1523
               
               
               Cow position:chr23:24639217-24639808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 369

               
               
               Conread position:937-1440
               
               
               Cow position:chr23:24560637-24560129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 297

               
               
               Conread position:938-1272
               
               
               Cow position:chr23:24654037-24654374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):147, 170

               
               
               Conread position:940-1521
               
               
               Cow position:chr23:24560716-24560132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 0

               
               
               Conread position:950-1370
               
               
               Cow position:chr23:24626324-24626745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:276
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):172, 349

               
               
               Conread position:950-1477
               
               
               Cow position:chr23:24522717-24522190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:333
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):173, 107

               
               
               Conread position:950-1523
               
               
               Cow position:chr23:24639400-24639976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 293

               
               
               Conread position:955-1521
               
               
               Cow position:chr23:25626471-25627037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 74

               
               
               Conread position:956-1440
               
               
               Cow position:chr23:25626556-25627040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 31

               
               
               Conread position:957-1515
               
               
               Cow position:chr23:24522794-24522236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 186

               
               
               Conread position:957-1523
               
               
               Cow position:chr23:24536106-24535537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 56

               
               
               Conread position:959-1417
               
               
               Cow position:chr23:24522624-24522166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):165, 14

               
               
               Conread position:995-1525
               
               
               Cow position:chr23:25660128-25660661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 64

               
               
               Conread position:997-1514
               
               
               Cow position:chr23:25698677-25698157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 47

               
               
               Conread position:1002-1523
               
               
               Cow position:chr23:24560904-24560382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 35

               
               
               Conread position:1012-1454
               
               
               Cow position:chr23:24626302-24626745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 187

               
               
               Conread position:1019-1521
               
               
               Cow position:chr23:24547329-24546824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 30

               
               
               Conread position:1121-1523
               
               
               Cow position:chr23:24522795-24522396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):137, 106

               
               
               Conread position:1122-1514
               
               
               Cow position:chr23:24626331-24626723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 112

               
               
               Conread position:1124-1448
               
               
               Cow position:chr23:24654058-24654382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):111, 103

               
               
               Conread position:1124-1513
               
               
               Cow position:chr23:25724102-25723713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:258
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):115, 105

               
               
               Conread position:1124-1521
               
               
               Cow position:chr23:25698631-25698234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):15, 22

               
               
               Conread position:1124-1523
               
               
               Cow position:chr23:24547305-24546906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 105

               
               
               Conread position:1143-1523
               
               
               Cow position:chr23:24626268-24626648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 52

               
               
               Conread position:1193-1519
               
               
               Cow position:chr23:24654043-24654369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):42, 34

               
               
               Conread position:1205-1523
               
               
               Cow position:chr23:25724105-25723787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:218
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):30, 12

               
               
               Conread position:1267-1523
               
               
               Cow position:chr23:24547330-24547074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):65, 59

               
               
               Conread position:1345-1525
               
               
               Cow position:chr23:24626302-24626482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:235-509
               
               
               Cow position:chr24:17010413-17010687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:235-512
               
               
               Cow position:chr24:17062914-17063191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:240-512
               
               
               Cow position:chr24:17081829-17081557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:295-497
               
               
               Cow position:chr24:16984942-16985137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:161
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:930-1270
               
               
               Cow position:chr24:17077846-17077503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:228
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):194, 306

               
               
               Conread position:930-1516
               
               
               Cow position:chr24:17035711-17035122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 300

               
               
               Conread position:930-1523
               
               
               Cow position:chr24:17036299-17035703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 175

               
               
               Conread position:930-1523
               
               
               Cow position:chr24:17078350-17077754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 300

               
               
               Conread position:932-1185
               
               
               Cow position:chr24:17013245-17013501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):190, 0

               
               
               Conread position:932-1352
               
               
               Cow position:chr24:17070624-17071047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:274
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):191, 296

               
               
               Conread position:932-1431
               
               
               Cow position:chr24:17070540-17071042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 0

               
               
               Conread position:932-1438
               
               
               Cow position:chr24:17035457-17034948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:313
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):15, 19

               
               
               Conread position:932-1452
               
               
               Cow position:chr24:17035541-17035018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 298

               
               
               Conread position:932-1521
               
               
               Cow position:chr24:17036045-17035453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 214

               
               
               Conread position:932-1522
               
               
               Cow position:chr24:17078264-17077671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 0

               
               
               Conread position:932-1523
               
               
               Cow position:chr24:17035625-17035031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 305

               
               
               Conread position:932-1523
               
               
               Cow position:chr24:17035793-17035199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 298

               
               
               Conread position:932-1523
               
               
               Cow position:chr24:17036129-17035535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 169

               
               
               Conread position:932-1523
               
               
               Cow position:chr24:17036213-17035619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 298

               
               
               Conread position:932-1523
               
               
               Cow position:chr24:17036381-17035787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 298

               
               
               Conread position:932-1525
               
               
               Cow position:chr24:17078096-17077500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 173

               
               
               Conread position:933-1285
               
               
               Cow position:chr24:17013162-17013516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):188, 292

               
               
               Conread position:935-1523
               
               
               Cow position:chr24:17036546-17035955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 175

               
               
               Conread position:956-1515
               
               
               Cow position:chr24:17070480-17071042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 154

               
               
               Conread position:959-1512
               
               
               Cow position:chr24:17078153-17077597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 271

               
               
               Conread position:985-1515
               
               
               Cow position:chr24:17070424-17070958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 249

               
               
               Conread position:1003-1311
               
               
               Cow position:chr24:17013148-17013459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:1040-1523
               
               
               Cow position:chr24:17070398-17070882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 12

               
               
               Conread position:1124-1440
               
               
               Cow position:chr24:17013188-17013504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:212
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1193-1526
               
               
               Cow position:chr24:17070468-17070801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):138, 132

               
               
               Conread position:1199-1521
               
               
               Cow position:chr24:17013179-17013501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):36, 28

               
               
               Conread position:1251-1521
               
               
               Cow position:chr24:17036563-17036293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):9, 18

               
               
               Conread position:1266-1515
               
               
               Cow position:chr24:17013162-17013411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:31-512
               
               
               Cow position:chr25:33142603-33143092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 107

               
               
               Conread position:206-447
               
               
               Cow position:chr25:34467655-34467897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:233-500
               
               
               Cow position:chr25:34745102-34744835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:236-418
               
               
               Cow position:chr25:361390-361572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:236-462
               
               
               Cow position:chr25:339490-339716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:236-484
               
               
               Cow position:chr25:3673396-3673644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:236-485
               
               
               Cow position:chr25:33122297-33122546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:236-488
               
               
               Cow position:chr25:421945-422197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:187
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):197, 185

               
               
               Conread position:236-489
               
               
               Cow position:chr25:3639864-3639611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):56, 44

               
               
               Conread position:236-512
               
               
               Cow position:chr25:22223928-22224204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):255, 262

               
               
               Conread position:242-489
               
               
               Cow position:chr25:4663659-4663412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:247-512
               
               
               Cow position:chr25:321865-322130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):246, 259

               
               
               Conread position:248-503
               
               
               Cow position:chr25:431793-431550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:254-459
               
               
               Cow position:chr25:34751286-34751491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:163
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:510-701
               
               
               Cow position:chr25:33143378-33143572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:153
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:700-1929
               
               
               Cow position:chr25:33144614-33145848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:1240
               
               
               Alignm identity:1047
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):939, 897

               
               
               Conread position:899-1249
               
               
               Cow position:chr25:366689-367042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):138, 143

               
               
               Conread position:920-1356
               
               
               Cow position:chr25:34732623-34732184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):201, 279

               
               
               Conread position:927-1523
               
               
               Cow position:chr25:33157565-33156966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 45

               
               
               Conread position:930-1225
               
               
               Cow position:chr25:22235992-22236290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):121, 126

               
               
               Conread position:930-1270
               
               
               Cow position:chr25:33127881-33128224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):193, 0

               
               
               Conread position:930-1272
               
               
               Cow position:chr25:36801622-36801967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):194, 235

               
               
               Conread position:930-1345
               
               
               Cow position:chr25:346443-346861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:255
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):107, 114

               
               
               Conread position:930-1356
               
               
               Cow position:chr25:34447437-34447857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):61, 53

               
               
               Conread position:930-1412
               
               
               Cow position:chr25:33305323-33304844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:300
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):228, 5

               
               
               Conread position:930-1424
               
               
               Cow position:chr25:23420378-23420875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:312
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):194, 237

               
               
               Conread position:930-1523
               
               
               Cow position:chr25:33298642-33299238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 297

               
               
               Conread position:930-1523
               
               
               Cow position:chr25:33298726-33299322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 60

               
               
               Conread position:930-1523
               
               
               Cow position:chr25:33299230-33299826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 54

               
               
               Conread position:930-1523
               
               
               Cow position:chr25:34770045-34769449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 171

               
               
               Conread position:930-1523
               
               
               Cow position:chr25:36800710-36801306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 305

               
               
               Conread position:930-1526
               
               
               Cow position:chr25:33298978-33299577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 311

               
               
               Conread position:930-1531
               
               
               Cow position:chr25:326660-327270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 317

               
               
               Conread position:931-1386
               
               
               Cow position:chr25:33299399-33299853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:293
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):43, 53

               
               
               Conread position:931-1401
               
               
               Cow position:chr25:34473589-34474057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:288
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):95, 7

               
               
               Conread position:931-1522
               
               
               Cow position:chr25:33530056-33530651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:343
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):6, 133

               
               
               Conread position:931-1523
               
               
               Cow position:chr25:36801215-36801798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 119

               
               
               Conread position:931-1523
               
               
               Cow position:chr25:36801371-36801966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:361
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):193, 297

               
               
               Conread position:932-1242
               
               
               Cow position:chr25:34734012-34733699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):120, 124

               
               
               Conread position:932-1329
               
               
               Cow position:chr25:22235910-22236305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:249
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):190, 291

               
               
               Conread position:932-1354
               
               
               Cow position:chr25:33127799-33128224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 300

               
               
               Conread position:932-1430
               
               
               Cow position:chr25:34763243-34763741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 128

               
               
               Conread position:932-1473
               
               
               Cow position:chr25:33157392-33156848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 0

               
               
               Conread position:932-1474
               
               
               Cow position:chr25:25652353-25652898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 502

               
               
               Conread position:932-1494
               
               
               Cow position:chr25:34769791-34769227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 305

               
               
               Conread position:932-1506
               
               
               Cow position:chr25:34447187-34447757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 305

               
               
               Conread position:932-1507
               
               
               Cow position:chr25:25652269-25652847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 0

               
               
               Conread position:932-1513
               
               
               Cow position:chr25:25652437-25653021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 311

               
               
               Conread position:932-1518
               
               
               Cow position:chr25:3664012-3664601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:350
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):120, 126

               
               
               Conread position:932-1523
               
               
               Cow position:chr25:25652689-25653283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 126

               
               
               Conread position:932-1523
               
               
               Cow position:chr25:34732443-34731849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:355
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):122, 134

               
               
               Conread position:932-1523
               
               
               Cow position:chr25:34769959-34769365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 303

               
               
               Conread position:932-1524
               
               
               Cow position:chr25:33157308-33156714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 298

               
               
               Conread position:932-1525
               
               
               Cow position:chr25:34762910-34763500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 128

               
               
               Conread position:933-1305
               
               
               Cow position:chr25:414698-414326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):192, 237

               
               
               Conread position:934-1356
               
               
               Cow position:chr25:36801542-36801967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:272
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):187, 231

               
               
               Conread position:934-1513
               
               
               Cow position:chr25:34762828-34763407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 291

               
               
               Conread position:934-1514
               
               
               Cow position:chr25:34447021-34447604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 296

               
               
               Conread position:935-1468
               
               
               Cow position:chr25:36800799-36801335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 55

               
               
               Conread position:935-1474
               
               
               Cow position:chr25:34447106-34447648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 306

               
               
               Conread position:935-1523
               
               
               Cow position:chr25:25652188-25652779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 123

               
               
               Conread position:935-1523
               
               
               Cow position:chr25:33298479-33299070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 80

               
               
               Conread position:936-1525
               
               
               Cow position:chr25:34446937-34447531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 110

               
               
               Conread position:944-1513
               
               
               Cow position:chr25:3663940-3664512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:345
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):179, 196

               
               
               Conread position:945-1275
               
               
               Cow position:chr25:4657455-4657122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):176, 296

               
               
               Conread position:945-1424
               
               
               Cow position:chr25:326339-326821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:301
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):104, 124

               
               
               Conread position:945-1431
               
               
               Cow position:chr25:33127728-33128217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 285

               
               
               Conread position:950-1401
               
               
               Cow position:chr25:22235844-22236298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:277
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):103, 111

               
               
               Conread position:950-1523
               
               
               Cow position:chr25:33157458-33156882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 363

               
               
               Conread position:954-1446
               
               
               Cow position:chr25:34473526-34474018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:312
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):98, 112

               
               
               Conread position:955-1347
               
               
               Cow position:chr25:34473695-34474088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):97, 103

               
               
               Conread position:955-1390
               
               
               Cow position:chr25:33305944-33305512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:268
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):168, 104

               
               
               Conread position:955-1473
               
               
               Cow position:chr25:23420319-23420840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 0

               
               
               Conread position:955-1523
               
               
               Cow position:chr25:34770104-34769533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 28

               
               
               Conread position:955-1523
               
               
               Cow position:chr25:36800651-36801222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 275

               
               
               Conread position:956-1521
               
               
               Cow position:chr25:33306277-33305715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:348
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):168, 89

               
               
               Conread position:962-1526
               
               
               Cow position:chr25:33127661-33128228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 37

               
               
               Conread position:980-1523
               
               
               Cow position:chr25:34770163-34769617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 257

               
               
               Conread position:982-1523
               
               
               Cow position:chr25:36801338-36801882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:991-1430
               
               
               Cow position:chr25:36801515-36801957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:283
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):130, 356

               
               
               Conread position:997-1525
               
               
               Cow position:chr25:34713928-34714459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:312
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):124, 348

               
               
               Conread position:998-1521
               
               
               Cow position:chr25:33305421-33304900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:333
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):88, 17

               
               
               Conread position:998-1523
               
               
               Cow position:chr25:34763141-34763666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:329
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):54, 60

               
               
               Conread position:1019-1523
               
               
               Cow position:chr25:25652188-25652695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 39

               
               
               Conread position:1020-1491
               
               
               Cow position:chr25:326330-326804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:298
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):96, 155

               
               
               Conread position:1020-1492
               
               
               Cow position:chr25:3663932-3664407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:295
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):105, 204

               
               
               Conread position:1021-1443
               
               
               Cow position:chr25:4657463-4657038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:257
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):100, 291

               
               
               Conread position:1021-1523
               
               
               Cow position:chr25:34473509-34474011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:314
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):101, 161

               
               
               Conread position:1025-1522
               
               
               Cow position:chr25:3636556-3636056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:303
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):100, 209

               
               
               Conread position:1118-1515
               
               
               Cow position:chr25:23420403-23420798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:264
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):114, 9

               
               
               Conread position:1119-1513
               
               
               Cow position:chr25:3676011-3676405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):198, 193

               
               
               Conread position:1119-1514
               
               
               Cow position:chr25:34714137-34714532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):376, 362

               
               
               Conread position:1122-1523
               
               
               Cow position:chr25:34713804-34714205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):102, 111

               
               
               Conread position:1123-1525
               
               
               Cow position:chr25:326352-326754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):142, 111

               
               
               Conread position:1124-1517
               
               
               Cow position:chr25:34732584-34732191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:244
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):102, 114

               
               
               Conread position:1124-1523
               
               
               Cow position:chr25:23420323-23420722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 114

               
               
               Conread position:1127-1428
               
               
               Cow position:chr25:366753-367053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):112, 9

               
               
               Conread position:1127-1513
               
               
               Cow position:chr25:346476-346861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):90, 9

               
               
               Conread position:1130-1523
               
               
               Cow position:chr25:33305372-33304983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):179, 54

               
               
               Conread position:1135-1513
               
               
               Cow position:chr25:34446889-34447267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:237
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):31, 41

               
               
               Conread position:1137-1523
               
               
               Cow position:chr25:34770171-34769785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:248
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):105, 97

               
               
               Conread position:1161-1472
               
               
               Cow position:chr25:18642194-18641879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):125, 175

               
               
               Conread position:1162-1474
               
               
               Cow position:chr25:22235891-22236203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):122, 118

               
               
               Conread position:1163-1513
               
               
               Cow position:chr25:22235976-22236326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:239
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):37, 33

               
               
               Conread position:1169-1523
               
               
               Cow position:chr25:22235811-22236168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 161

               
               
               Conread position:1177-1523
               
               
               Cow position:chr25:34732615-34732269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):57, 50

               
               
               Conread position:1182-1506
               
               
               Cow position:chr25:34732106-34731782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):53, 42

               
               
               Conread position:1183-1506
               
               
               Cow position:chr25:366724-367047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1190-1437
               
               
               Cow position:chr25:427335-427582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):49, 35

               
               
               Conread position:1190-1522
               
               
               Cow position:chr25:346454-346786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1190-1525
               
               
               Cow position:chr25:33298569-33298904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1197-1517
               
               
               Cow position:chr25:3663944-3664264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):30, 41

               
               
               Conread position:1198-1525
               
               
               Cow position:chr25:34733995-34733670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):27, 37

               
               
               Conread position:1205-1474
               
               
               Cow position:chr25:414675-414408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):111, 118

               
               
               Conread position:1205-1521
               
               
               Cow position:chr25:23420320-23420636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):34, 22

               
               
               Conread position:1205-1523
               
               
               Cow position:chr25:4657444-4657126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):29, 33

               
               
               Conread position:1237-1525
               
               
               Cow position:chr25:34762882-34763167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):223, 233

               
               
               Conread position:1244-1522
               
               
               Cow position:chr25:3676052-3676330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):71, 60

               
               
               Conread position:1247-1523
               
               
               Cow position:chr25:33305421-33305148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:1259-1523
               
               
               Cow position:chr25:414781-414525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:1261-1524
               
               
               Cow position:chr25:34732615-34732352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):221, 214

               
               
               Conread position:1262-1523
               
               
               Cow position:chr25:36844626-36844365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1264-1523
               
               
               Cow position:chr25:34446934-34447193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1264-1523
               
               
               Cow position:chr25:34762825-34763084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1267-1523
               
               
               Cow position:chr25:366724-366980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1269-1517
               
               
               Cow position:chr25:427330-427579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):245, 0

               
               
               Conread position:1269-1523
               
               
               Cow position:chr25:33306461-33306211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):58, 65

               
               
               Conread position:1289-1523
               
               
               Cow position:chr25:23420320-23420554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):46, 38

               
               
               Conread position:932-1529
               
               
               Cow position:chr27:21615942-21615345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:361
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):191, 233

               
               
               Conread position:937-1523
               
               
               Cow position:chr27:21616110-21615517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:363
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):94, 19

               
               
               Conread position:930-1445
               
               
               Cow position:chr28:9253098-9253617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 237

               
               
               Conread position:930-1445
               
               
               Cow position:chr28:9290167-9290679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 41

               
               
               Conread position:930-1514
               
               
               Cow position:chr28:7757747-7758334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 305

               
               
               Conread position:930-1515
               
               
               Cow position:chr28:9253014-9253602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 305

               
               
               Conread position:930-1521
               
               
               Cow position:chr28:7758167-7758745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):309, 221

               
               
               Conread position:930-1521
               
               
               Cow position:chr28:34695991-34696585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 0

               
               
               Conread position:930-1523
               
               
               Cow position:chr28:7757495-7758091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:930-1523
               
               
               Cow position:chr28:7758083-7758663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 114

               
               
               Conread position:930-1523
               
               
               Cow position:chr28:7810343-7810930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:366
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):107, 114

               
               
               Conread position:930-1523
               
               
               Cow position:chr28:9298729-9299308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:357
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):56, 63

               
               
               Conread position:931-1397
               
               
               Cow position:chr28:7758404-7758873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:281
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):193, 302

               
               
               Conread position:931-1505
               
               
               Cow position:chr28:7757412-7757989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 302

               
               
               Conread position:932-1187
               
               
               Cow position:chr28:33210393-33210649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):33, 39

               
               
               Conread position:932-1523
               
               
               Cow position:chr28:7757665-7758259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 303

               
               
               Conread position:932-1523
               
               
               Cow position:chr28:9298814-9299392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:357
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):42, 52

               
               
               Conread position:932-1523
               
               
               Cow position:chr28:11334140-11333546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 135

               
               
               Conread position:935-1312
               
               
               Cow position:chr28:33210228-33210609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:944-1432
               
               
               Cow position:chr28:11333960-11333469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:307
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):177, 279

               
               
               Conread position:944-1523
               
               
               Cow position:chr28:34695921-34696503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 290

               
               
               Conread position:946-1523
               
               
               Cow position:chr28:34695839-34696419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 226

               
               
               Conread position:949-1505
               
               
               Cow position:chr28:7757346-7757905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 284

               
               
               Conread position:950-1398
               
               
               Cow position:chr28:34673454-34673905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:281
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):100, 109

               
               
               Conread position:956-1474
               
               
               Cow position:chr28:34673376-34673897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:317
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):97, 114

               
               
               Conread position:959-1523
               
               
               Cow position:chr28:9298591-9299154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:359
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):10, 27

               
               
               Conread position:963-1523
               
               
               Cow position:chr28:9252962-9253526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 337

               
               
               Conread position:990-1523
               
               
               Cow position:chr28:9290059-9290589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:335
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):133, 149

               
               
               Conread position:998-1477
               
               
               Cow position:chr28:9290151-9290627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:308
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):102, 58

               
               
               Conread position:1013-1523
               
               
               Cow position:chr28:9298561-9299070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:324
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):43, 104

               
               
               Conread position:1015-1473
               
               
               Cow position:chr28:9299217-9299675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:284
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):106, 356

               
               
               Conread position:1028-1474
               
               
               Cow position:chr28:34673364-34673813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:269
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):95, 128

               
               
               Conread position:1089-1467
               
               
               Cow position:chr28:7758394-7758775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):35, 78

               
               
               Conread position:1107-1483
               
               
               Cow position:chr28:34673359-34673739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:254
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):18, 60

               
               
               Conread position:1122-1524
               
               
               Cow position:chr28:34695850-34696252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):78, 74

               
               
               Conread position:1124-1521
               
               
               Cow position:chr28:7810288-7810676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):114, 103

               
               
               Conread position:1124-1523
               
               
               Cow position:chr28:7757440-7757839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 177

               
               
               Conread position:1127-1444
               
               
               Cow position:chr28:33210340-33210657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):90, 9

               
               
               Conread position:1128-1513
               
               
               Cow position:chr28:33210255-33210642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):8, 24

               
               
               Conread position:1152-1515
               
               
               Cow position:chr28:7757384-7757747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):86, 74

               
               
               Conread position:1183-1491
               
               
               Cow position:chr28:34673356-34673662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:1193-1523
               
               
               Cow position:chr28:9299230-9299560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):48, 36

               
               
               Conread position:1264-1523
               
               
               Cow position:chr28:33210223-33210483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):5, 212

               
               
               Conread position:1265-1523
               
               
               Cow position:chr28:7757413-7757671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):40, 36

               
               
               Conread position:930-1523
               
               
               Cow position:chr29:39627513-39626920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 257

               
               
               Conread position:936-1514
               
               
               Cow position:chr29:39627423-39626845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 185

               
               
               Conread position:945-1523
               
               
               Cow position:chr29:39627582-39627004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:356
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):180, 219

               
               
               Conread position:927-1397
               
               
               Cow position:chr3:20194796-20195271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:303
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):37, 290

               
               
               Conread position:931-1523
               
               
               Cow position:chr3:62742442-62743028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:361
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):154, 170

               
               
               Conread position:932-1430
               
               
               Cow position:chr3:68045850-68046351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:309
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):192, 297

               
               
               Conread position:932-1432
               
               
               Cow position:chr3:62722076-62721573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 300

               
               
               Conread position:932-1439
               
               
               Cow position:chr3:68027257-68027765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:307
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):167, 298

               
               
               Conread position:932-1467
               
               
               Cow position:chr3:62742858-62743375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:323
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):26, 155

               
               
               Conread position:932-1521
               
               
               Cow position:chr3:68027089-68027681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 309

               
               
               Conread position:932-1521
               
               
               Cow position:chr3:68045682-68046274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 225

               
               
               Conread position:932-1525
               
               
               Cow position:chr3:62722244-62721650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 372

               
               
               Conread position:934-1354
               
               
               Cow position:chr3:62721990-62721567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:271
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):190, 233

               
               
               Conread position:954-1384
               
               
               Cow position:chr3:62743032-62743460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:264
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):170, 84

               
               
               Conread position:955-1521
               
               
               Cow position:chr3:62722305-62721736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:989-1523
               
               
               Cow position:chr3:68027062-68027599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:314
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):136, 315

               
               
               Conread position:989-1526
               
               
               Cow position:chr3:68045655-68046195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:334
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):110, 116

               
               
               Conread position:1041-1474
               
               
               Cow position:chr3:20194744-20195180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:273
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):82, 200

               
               
               Conread position:1106-1523
               
               
               Cow position:chr3:20194725-20195145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:262
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):17, 135

               
               
               Conread position:1124-1399
               
               
               Cow position:chr3:68027032-68027307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):76, 71

               
               
               Conread position:1124-1523
               
               
               Cow position:chr3:62722301-62721902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:258
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):108, 114

               
               
               Conread position:1127-1525
               
               
               Cow position:chr3:68027119-68027517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):112, 106

               
               
               Conread position:1193-1474
               
               
               Cow position:chr3:68045610-68045891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):33, 45

               
               
               Conread position:1270-1521
               
               
               Cow position:chr3:62722323-62722072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):219, 213

               
               
               Conread position:944-1526
               
               
               Cow position:chr4:65495016-65494425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:355
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):108, 129

               
               
               Conread position:997-1377
               
               
               Cow position:chr4:65703605-65703222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):55, 61

               
               
               Conread position:1016-1473
               
               
               Cow position:chr4:65121614-65122074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):106, 186

               
               
               Conread position:1022-1522
               
               
               Cow position:chr4:65495022-65494513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:311
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):30, 36

               
               
               Conread position:1072-1447
               
               
               Cow position:chr4:65261583-65261205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):51, 85

               
               
               Conread position:1163-1523
               
               
               Cow position:chr4:42315057-42314699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):66, 91

               
               
               Conread position:925-1523
               
               
               Cow position:chr6:49428637-49429239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 572

               
               
               Conread position:929-1523
               
               
               Cow position:chr6:49428221-49428819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 130

               
               
               Conread position:930-1454
               
               
               Cow position:chr6:49340903-49341430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:530
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 299

               
               
               Conread position:930-1514
               
               
               Cow position:chr6:49396372-49396959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 185

               
               
               Conread position:930-1521
               
               
               Cow position:chr6:49340483-49341077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 0

               
               
               Conread position:931-1475
               
               
               Cow position:chr6:49362095-49362630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:322
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):192, 234

               
               
               Conread position:932-1391
               
               
               Cow position:chr6:49340989-49341450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 372

               
               
               Conread position:932-1451
               
               
               Cow position:chr6:49428981-49429503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 448

               
               
               Conread position:932-1474
               
               
               Cow position:chr6:49340569-49341114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 0

               
               
               Conread position:932-1523
               
               
               Cow position:chr6:49340821-49341415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 151

               
               
               Conread position:932-1523
               
               
               Cow position:chr6:49396290-49396884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 126

               
               
               Conread position:932-1523
               
               
               Cow position:chr6:49428897-49429491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 157

               
               
               Conread position:938-1523
               
               
               Cow position:chr6:49396046-49396632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:358
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):15, 62

               
               
               Conread position:949-1523
               
               
               Cow position:chr6:49340418-49340995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 550

               
               
               Conread position:949-1525
               
               
               Cow position:chr6:49395893-49396466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 281

               
               
               Conread position:956-1524
               
               
               Cow position:chr6:49428837-49429408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:352
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):92, 83

               
               
               Conread position:959-1524
               
               
               Cow position:chr6:49396155-49396717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:355
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):165, 76

               
               
               Conread position:1254-1473
               
               
               Cow position:chr6:49340390-49340609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:244-489
               
               
               Cow position:chr7:27245079-27244834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:920-1473
               
               
               Cow position:chr7:1439710-1440263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:337
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):204, 51

               
               
               Conread position:929-1519
               
               
               Cow position:chr7:18389988-18390582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:366
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):95, 119

               
               
               Conread position:930-1223
               
               
               Cow position:chr7:11600772-11600476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):167, 174

               
               
               Conread position:930-1475
               
               
               Cow position:chr7:18390241-18390789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:551
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 303

               
               
               Conread position:930-1477
               
               
               Cow position:chr7:8277675-8278225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:337
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):146, 198

               
               
               Conread position:930-1505
               
               
               Cow position:chr7:18390157-18390735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 114

               
               
               Conread position:930-1523
               
               
               Cow position:chr7:1439549-1440145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:365
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):107, 39

               
               
               Conread position:932-1225
               
               
               Cow position:chr7:12293681-12293977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):189, 0

               
               
               Conread position:932-1366
               
               
               Cow position:chr7:8278181-8278616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:275
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):58, 49

               
               
               Conread position:932-1399
               
               
               Cow position:chr7:28846588-28847058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:278
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):191, 397

               
               
               Conread position:932-1400
               
               
               Cow position:chr7:18390327-18390798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 298

               
               
               Conread position:932-1432
               
               
               Cow position:chr7:8325654-8326160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:325
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):54, 43

               
               
               Conread position:932-1445
               
               
               Cow position:chr7:1014936-1015452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 295

               
               
               Conread position:932-1446
               
               
               Cow position:chr7:8277845-8278362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:332
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):66, 50

               
               
               Conread position:932-1463
               
               
               Cow position:chr7:1014354-1014882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:932-1467
               
               
               Cow position:chr7:11601106-11600568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:328
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):192, 0

               
               
               Conread position:932-1480
               
               
               Cow position:chr7:8243467-8244016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:337
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):57, 64

               
               
               Conread position:932-1481
               
               
               Cow position:chr7:11601190-11600638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 381

               
               
               Conread position:932-1481
               
               
               Cow position:chr7:42878775-42878222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 296

               
               
               Conread position:932-1491
               
               
               Cow position:chr7:8277257-8277819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:340
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):79, 43

               
               
               Conread position:932-1506
               
               
               Cow position:chr7:42878859-42878282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 311

               
               
               Conread position:932-1521
               
               
               Cow position:chr7:3180114-3180706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 173

               
               
               Conread position:932-1521
               
               
               Cow position:chr7:8325150-8325742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:372
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):66, 51

               
               
               Conread position:932-1522
               
               
               Cow position:chr7:1014852-1015445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 0

               
               
               Conread position:932-1523
               
               
               Cow position:chr7:3179862-3180456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 50

               
               
               Conread position:932-1523
               
               
               Cow position:chr7:3180030-3180624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 298

               
               
               Conread position:932-1523
               
               
               Cow position:chr7:3180282-3180875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 298

               
               
               Conread position:932-1523
               
               
               Cow position:chr7:8325234-8325828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:352
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):132, 157

               
               
               Conread position:932-1523
               
               
               Cow position:chr7:8325402-8325996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:351
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):193, 218

               
               
               Conread position:932-1523
               
               
               Cow position:chr7:18390075-18390669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 111

               
               
               Conread position:932-1523
               
               
               Cow position:chr7:42879027-42878433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 300

               
               
               Conread position:932-1526
               
               
               Cow position:chr7:8277929-8278524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:362
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):58, 46

               
               
               Conread position:934-1474
               
               
               Cow position:chr7:8325572-8326115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:342
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):64, 48

               
               
               Conread position:942-1523
               
               
               Cow position:chr7:3179704-3180288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 0

               
               
               Conread position:944-1523
               
               
               Cow position:chr7:8277521-8278103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:346
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):54, 38

               
               
               Conread position:944-1523
               
               
               Cow position:chr7:8324826-8325408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:374
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):62, 33

               
               
               Conread position:950-1523
               
               
               Cow position:chr7:42879177-42878601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 285

               
               
               Conread position:956-1522
               
               
               Cow position:chr7:12293285-12293854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:335
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):166, 274

               
               
               Conread position:959-1523
               
               
               Cow position:chr7:42879252-42878685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 515

               
               
               Conread position:1003-1523
               
               
               Cow position:chr7:1014671-1015194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 62

               
               
               Conread position:1042-1492
               
               
               Cow position:chr7:28846446-28846899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:1122-1525
               
               
               Cow position:chr7:1014709-1015112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:260
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):19, 24

               
               
               Conread position:1124-1454
               
               
               Cow position:chr7:1014297-1014627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):110, 103

               
               
               Conread position:1124-1528
               
               
               Cow position:chr7:11434946-11434556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:252
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):293, 101

               
               
               Conread position:1176-1523
               
               
               Cow position:chr7:42879284-42878937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):63, 48

               
               
               Conread position:1194-1503
               
               
               Cow position:chr7:1014283-1014592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):61, 36

               
               
               Conread position:1255-1500
               
               
               Cow position:chr7:1014260-1014505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):234, 227

               
               
               Conread position:1264-1474
               
               
               Cow position:chr7:8277256-8277466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):48, 37

               
               
               Conread position:1281-1525
               
               
               Cow position:chr7:3179710-3179954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):210, 198

               
               
               Conread position:242-499
               
               
               Cow position:chr8:55569522-55569779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):199, 174

               
               
               Conread position:930-1384
               
               
               Cow position:chr8:45201517-45201974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:290
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):194, 432

               
               
               Conread position:930-1446
               
               
               Cow position:chr8:48407299-48406780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 129

               
               
               Conread position:930-1505
               
               
               Cow position:chr8:46816796-46817374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 305

               
               
               Conread position:930-1515
               
               
               Cow position:chr8:45201349-45201937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 374

               
               
               Conread position:930-1521
               
               
               Cow position:chr8:48406963-48406369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:361
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):99, 109

               
               
               Conread position:930-1523
               
               
               Cow position:chr8:45201097-45201693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 298

               
               
               Conread position:930-1523
               
               
               Cow position:chr8:45201181-45201777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 374

               
               
               Conread position:930-1523
               
               
               Cow position:chr8:45201265-45201861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 544

               
               
               Conread position:930-1523
               
               
               Cow position:chr8:46816124-46816720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 374

               
               
               Conread position:930-1523
               
               
               Cow position:chr8:48407635-48407039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 35

               
               
               Conread position:931-1523
               
               
               Cow position:chr8:46816629-46817224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 297

               
               
               Conread position:932-1505
               
               
               Cow position:chr8:46816714-46817290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 144

               
               
               Conread position:932-1515
               
               
               Cow position:chr8:48407045-48406459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 301

               
               
               Conread position:932-1515
               
               
               Cow position:chr8:48407213-48406627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 196

               
               
               Conread position:932-1517
               
               
               Cow position:chr8:55580903-55581491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 172

               
               
               Conread position:932-1521
               
               
               Cow position:chr8:55581155-55581747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:358
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):192, 295

               
               
               Conread position:932-1523
               
               
               Cow position:chr8:55580987-55581581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 550

               
               
               Conread position:932-1525
               
               
               Cow position:chr8:46816378-46816974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 303

               
               
               Conread position:932-1525
               
               
               Cow position:chr8:48407129-48406533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 45

               
               
               Conread position:932-1525
               
               
               Cow position:chr8:48407549-48406953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 303

               
               
               Conread position:932-1527
               
               
               Cow position:chr8:55581071-55581669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 305

               
               
               Conread position:949-1467
               
               
               Cow position:chr8:46816059-46816580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:320
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):175, 249

               
               
               Conread position:949-1515
               
               
               Cow position:chr8:45201032-45201601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 119

               
               
               Conread position:949-1521
               
               
               Cow position:chr8:55580752-55581327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 31

               
               
               Conread position:950-1515
               
               
               Cow position:chr8:45200949-45201517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 94

               
               
               Conread position:950-1515
               
               
               Cow position:chr8:48407447-48406879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:349
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):102, 108

               
               
               Conread position:955-1525
               
               
               Cow position:chr8:46815981-46816554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 296

               
               
               Conread position:960-1523
               
               
               Cow position:chr8:46815899-46816468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 275

               
               
               Conread position:995-1525
               
               
               Cow position:chr8:48407318-48406787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:337
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):104, 110

               
               
               Conread position:1021-1523
               
               
               Cow position:chr8:45200936-45201441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:311
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):100, 210

               
               
               Conread position:1043-1440
               
               
               Cow position:chr8:48406682-48406280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:252
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):56, 89

               
               
               Conread position:1119-1523
               
               
               Cow position:chr8:55580841-55581245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 111

               
               
               Conread position:1124-1515
               
               
               Cow position:chr8:6958056-6957666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:243
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):29, 37

               
               
               Conread position:1124-1525
               
               
               Cow position:chr8:45200958-45201359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):113, 108

               
               
               Conread position:1185-1525
               
               
               Cow position:chr8:6958079-6957740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):54, 44

               
               
               Conread position:1267-1525
               
               
               Cow position:chr8:48407631-48407373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):51, 41

               
               
               Conread position:920-1521
               
               
               Cow position:chrX:25309875-25310479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 30

               
               
               Conread position:930-1371
               
               
               Cow position:chrX:29045097-29044653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):193, 0

               
               
               Conread position:930-1440
               
               
               Cow position:chrX:25324752-25324239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:321
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):186, 302

               
               
               Conread position:930-1467
               
               
               Cow position:chrX:25309717-25310257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:334
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):191, 296

               
               
               Conread position:930-1521
               
               
               Cow position:chrX:29045265-29044671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 302

               
               
               Conread position:930-1523
               
               
               Cow position:chrX:25309801-25310397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 305

               
               
               Conread position:930-1523
               
               
               Cow position:chrX:25325256-25324660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 0

               
               
               Conread position:930-1525
               
               
               Cow position:chrX:25325424-25324826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 321

               
               
               Conread position:932-1368
               
               
               Cow position:chrX:25310139-25310578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):192, 0

               
               
               Conread position:932-1474
               
               
               Cow position:chrX:13826783-13826238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 33

               
               
               Conread position:932-1505
               
               
               Cow position:chrX:25324834-25324258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:351
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):191, 426

               
               
               Conread position:932-1515
               
               
               Cow position:chrX:29045746-29045181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:355
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):191, 309

               
               
               Conread position:932-1521
               
               
               Cow position:chrX:25325758-25325166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:366
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):139, 196

               
               
               Conread position:932-1525
               
               
               Cow position:chrX:25325002-25324406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 0

               
               
               Conread position:935-1523
               
               
               Cow position:chrX:13826948-13826357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:353
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):116, 139

               
               
               Conread position:936-1523
               
               
               Cow position:chrX:25325502-25324912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 0

               
               
               Conread position:950-1401
               
               
               Cow position:chrX:13826681-13826227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:287
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):173, 248

               
               
               Conread position:950-1525
               
               
               Cow position:chrX:13826849-13826271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:355
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):25, 40

               
               
               Conread position:959-1446
               
               
               Cow position:chrX:29045152-29044662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 276

               
               
               Conread position:994-1464
               
               
               Cow position:chrX:14181415-14180942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:285
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):79, 70

               
               
               Conread position:997-1523
               
               
               Cow position:chrX:25309700-25310229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 238

               
               
               Conread position:1010-1514
               
               
               Cow position:chrX:14181483-14180976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:294
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):114, 137

               
               
               Conread position:1127-1525
               
               
               Cow position:chrX:29045317-29044919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:262
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):21, 30

               
               
               Conread position:1151-1512
               
               
               Cow position:chrX:14181423-14181062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):97, 93

               
               
               Conread position:1214-1525
               
               
               Cow position:chrX:25309668-25309979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):99, 87

               
               
               Conread position:1254-1523
               
               
               Cow position:chrX:29045757-29045488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):222, 228