Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-Mixc-0028p05.3
        

               Conread position:
               12-540
               

               Cow position:
               chr10:21939226-21938695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               534
               

               Alignm identity:
               320
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               47, 65
               

               Conread position:
               40-579
               

               Cow position:
               chr10:8996627-8996086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               543
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               444, 521
               

               Conread position:
               41-581
               

               Cow position:
               chr10:9010522-9009980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               546
               

               Alignm identity:
               335
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               81, 85
               

               Conread position:
               47-563
               

               Cow position:
               chr10:8996788-8996271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               521
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               253, 258
               

               Conread position:
               50-583
               

               Cow position:
               chr10:8996701-8996165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               540
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               166, 172
               

               Conread position:
               51-496
               

               Cow position:
               chr10:8996448-8996001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               165, 169
               

               Conread position:
               52-364
               

               Cow position:
               chr10:9010175-9009863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               164, 182
               

               Conread position:
               52-412
               

               Cow position:
               chr10:9010259-9009899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               220
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               248, 253
               

               Conread position:
               57-417
               

               Cow position:
               chr10:9031231-9031591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               225
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               56, 78
               

               Conread position:
               64-579
               

               Cow position:
               chr10:8996939-8996422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               519
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               277, 273
               

               Conread position:
               72-406
               

               Cow position:
               chr10:9031330-9031664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               72-532
               

               Cow position:
               chr10:9010323-9009861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               279
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               384, 0
               

               Conread position:
               72-540
               

               Cow position:
               chr10:8996511-8996041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               228, 233
               

               Conread position:
               92-519
               

               Cow position:
               chr10:9031182-9031611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 42
               

               Conread position:
               128-556
               

               Cow position:
               chr10:21939345-21938929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               272
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               344, 121
               

               Conread position:
               141-531
               

               Cow position:
               chr10:9010590-9010198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               250
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               221, 217
               

               Conread position:
               46-562
               

               Cow position:
               chr11:74555047-74554531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               519
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               440, 5
               

               Conread position:
               49-326
               

               Cow position:
               chr11:74554457-74554180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               181
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               160, 171
               

               Conread position:
               51-497
               

               Cow position:
               chr11:74554623-74554175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               173, 183
               

               Conread position:
               51-555
               

               Cow position:
               chr11:74554791-74554285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               508
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               311, 307
               

               Conread position:
               51-583
               

               Cow position:
               chr11:74554959-74554424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               537
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               161, 176
               

               Conread position:
               52-576
               

               Cow position:
               chr11:74554706-74554180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               528
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               431, 509
               

               Conread position:
               52-581
               

               Cow position:
               chr11:74554874-74554343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               532
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               432, 0
               

               Conread position:
               76-579
               

               Cow position:
               chr11:74555102-74554597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               509
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               313, 307
               

               Conread position:
               155-581
               

               Cow position:
               chr11:74555107-74554679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               278
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               57, 77
               

               Conread position:
               2-533
               

               Cow position:
               chr13:39984245-39984781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               538
               

               Alignm identity:
               328
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               56, 287
               

               Conread position:
               15-518
               

               Cow position:
               chr13:39930670-39931176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               510
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 25
               

               Conread position:
               40-364
               

               Cow position:
               chr13:56292148-56291823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               207
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               287, 0
               

               Conread position:
               46-562
               

               Cow position:
               chr13:22124733-22125250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               525
               

               Alignm identity:
               324
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               21, 28
               

               Conread position:
               46-562
               

               Cow position:
               chr13:24162459-24162976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               521
               

               Alignm identity:
               319
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               147, 160
               

               Conread position:
               46-581
               

               Cow position:
               chr13:56333688-56334234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               553
               

               Alignm identity:
               331
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               73, 91
               

               Conread position:
               47-557
               

               Cow position:
               chr13:22124902-22125414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               518
               

               Alignm identity:
               322
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               14, 27
               

               Conread position:
               47-557
               

               Cow position:
               chr13:24162628-24163140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               517
               

               Alignm identity:
               321
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               196, 189
               

               Conread position:
               48-532
               

               Cow position:
               chr13:56333774-56334269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               300
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               271, 336
               

               Conread position:
               52-440
               

               Cow position:
               chr13:56333610-56333998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               243
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               16, 31
               

               Conread position:
               53-562
               

               Cow position:
               chr13:39930627-39931137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               514
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 74
               

               Conread position:
               56-570
               

               Cow position:
               chr13:39984386-39984902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               520
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               212, 221
               

               Conread position:
               66-563
               

               Cow position:
               chr13:39983893-39984390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               505
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 15
               

               Conread position:
               72-530
               

               Cow position:
               chr13:39984234-39984694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               292
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               365, 372
               

               Conread position:
               72-579
               

               Cow position:
               chr13:39984150-39984659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               512
               

               Alignm identity:
               308
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               412, 456
               

               Conread position:
               72-581
               

               Cow position:
               chr13:39983982-39984493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               416, 487
               

               Conread position:
               76-542
               

               Cow position:
               chr13:39984070-39984538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 154
               

               Conread position:
               88-481
               

               Cow position:
               chr13:56292181-56291790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               258
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               124, 26
               

               Conread position:
               94-581
               

               Cow position:
               chr13:39930584-39931073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               492
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               376, 366
               

               Conread position:
               168-584
               

               Cow position:
               chr13:22124687-22125107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               257
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               319, 0
               

               Conread position:
               168-584
               

               Cow position:
               chr13:24162413-24162833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               254
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               319, 0
               

               Conread position:
               254-581
               

               Cow position:
               chr13:39930576-39930905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               222
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               216, 206
               

               Conread position:
               1-364
               

               Cow position:
               chr14:25910926-25911292 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               248
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               48, 69
               

               Conread position:
               1-486
               

               Cow position:
               chr14:3155993-3156481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 20
               

               Conread position:
               1-581
               

               Cow position:
               chr14:25877086-25877671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               589
               

               Alignm identity:
               381
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 455
               

               Conread position:
               3-581
               

               Cow position:
               chr14:25860035-25860620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               589
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 455
               

               Conread position:
               15-339
               

               Cow position:
               chr14:3079981-3079652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               208
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               15-404
               

               Cow position:
               chr14:3156091-3156483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               248
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               29, 18
               

               Conread position:
               15-465
               

               Cow position:
               chr14:3080149-3079696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 364
               

               Conread position:
               15-528
               

               Cow position:
               chr14:25859293-25859811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               519
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               15-532
               

               Cow position:
               chr14:25836324-25836846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               523
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               15-532
               

               Cow position:
               chr14:25895643-25896165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               525
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 125
               

               Conread position:
               15-579
               

               Cow position:
               chr14:25895139-25895708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               571
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 415
               

               Conread position:
               19-581
               

               Cow position:
               chr14:25895059-25895626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               572
               

               Alignm identity:
               349
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               30, 383
               

               Conread position:
               22-522
               

               Cow position:
               chr14:3100806-3100291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               517
               

               Alignm identity:
               305
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               22, 204
               

               Conread position:
               23-280
               

               Cow position:
               chr14:681011-681272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               175
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               15, 118
               

               Conread position:
               34-581
               

               Cow position:
               chr14:3127979-3127426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               558
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 97
               

               Conread position:
               41-532
               

               Cow position:
               chr14:3100867-3100374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               300
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               252, 264
               

               Conread position:
               41-567
               

               Cow position:
               chr14:25876622-25877153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               533
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 97
               

               Conread position:
               42-546
               

               Cow position:
               chr14:25895421-25895927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               508
               

               Alignm identity:
               315
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               140, 133
               

               Conread position:
               42-567
               

               Cow position:
               chr14:3080371-3079844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               531
               

               Alignm identity:
               331
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               175, 186
               

               Conread position:
               42-581
               

               Cow position:
               chr14:3080707-3080166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               544
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               211, 215
               

               Conread position:
               42-587
               

               Cow position:
               chr14:447728-448277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               552
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               193, 198
               

               Conread position:
               44-531
               

               Cow position:
               chr14:25895255-25895744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               300
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               423, 439
               

               Conread position:
               45-584
               

               Cow position:
               chr14:3080872-3080331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               543
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 99
               

               Conread position:
               46-322
               

               Cow position:
               chr14:3100609-3100336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               178
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               170, 5
               

               Conread position:
               46-581
               

               Cow position:
               chr14:3080954-3080418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               539
               

               Alignm identity:
               325
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               343, 5
               

               Conread position:
               47-530
               

               Cow position:
               chr14:3128130-3127645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               489
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 82
               

               Conread position:
               47-581
               

               Cow position:
               chr14:447649-448185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               540
               

               Alignm identity:
               335
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               74, 80
               

               Conread position:
               48-326
               

               Cow position:
               chr14:25860505-25860783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               161, 172
               

               Conread position:
               48-364
               

               Cow position:
               chr14:25877556-25877872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               211
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               161, 169
               

               Conread position:
               48-579
               

               Cow position:
               chr14:25876800-25877333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               537
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               163, 169
               

               Conread position:
               49-532
               

               Cow position:
               chr14:25876381-25876866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               489
               

               Alignm identity:
               309
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               28, 36
               

               Conread position:
               49-579
               

               Cow position:
               chr14:25835773-25836305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               536
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               163, 171
               

               Conread position:
               49-579
               

               Cow position:
               chr14:25859414-25859946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               535
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               163, 171
               

               Conread position:
               49-579
               

               Cow position:
               chr14:25859750-25860282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               538
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               208, 204
               

               Conread position:
               50-458
               

               Cow position:
               chr14:25836782-25837190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               50-579
               

               Cow position:
               chr14:25783491-25784022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               536
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               155, 167
               

               Conread position:
               51-445
               

               Cow position:
               chr14:680875-681270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               252
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               297, 286
               

               Conread position:
               51-567
               

               Cow position:
               chr14:680539-681057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               522
               

               Alignm identity:
               319
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               338, 325
               

               Conread position:
               51-567
               

               Cow position:
               chr14:3080194-3079676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               522
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               338, 333
               

               Conread position:
               51-567
               

               Cow position:
               chr14:3080278-3079760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               522
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 73
               

               Conread position:
               51-581
               

               Cow position:
               chr14:3080782-3080250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               536
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               286, 290
               

               Conread position:
               51-582
               

               Cow position:
               chr14:680371-680904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               536
               

               Alignm identity:
               322
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               422, 409
               

               Conread position:
               52-364
               

               Cow position:
               chr14:25896103-25896413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               202
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               69, 85
               

               Conread position:
               52-417
               

               Cow position:
               chr14:25910896-25911261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               243
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               160, 168
               

               Conread position:
               52-495
               

               Cow position:
               chr14:25895935-25896380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 168
               

               Conread position:
               52-519
               

               Cow position:
               chr14:3101354-3100889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               303
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               16, 28
               

               Conread position:
               52-522
               

               Cow position:
               chr14:25876468-25876940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 168
               

               Conread position:
               52-528
               

               Cow position:
               chr14:25784165-25784643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               302
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               248, 252
               

               Conread position:
               52-529
               

               Cow position:
               chr14:3061505-3061029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               285
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               337, 10
               

               Conread position:
               52-530
               

               Cow position:
               chr14:25795033-25794553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               301
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               153, 165
               

               Conread position:
               52-531
               

               Cow position:
               chr14:25860341-25860817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 150
               

               Conread position:
               52-531
               

               Cow position:
               chr14:25877392-25877873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 150
               

               Conread position:
               52-532
               

               Cow position:
               chr14:25836112-25836594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 15
               

               Conread position:
               52-532
               

               Cow position:
               chr14:25836448-25836930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               327, 316
               

               Conread position:
               52-532
               

               Cow position:
               chr14:25895851-25896333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 65
               

               Conread position:
               52-533
               

               Cow position:
               chr14:25784081-25784564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 165
               

               Conread position:
               52-540
               

               Cow position:
               chr14:25895515-25896005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 42
               

               Conread position:
               52-578
               

               Cow position:
               chr14:25859585-25860115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               532
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               160, 166
               

               Conread position:
               52-579
               

               Cow position:
               chr14:25836616-25837145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               533
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               167, 148
               

               Conread position:
               52-579
               

               Cow position:
               chr14:25860005-25860534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               533
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 165
               

               Conread position:
               52-579
               

               Cow position:
               chr14:25877056-25877585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               533
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 165
               

               Conread position:
               52-583
               

               Cow position:
               chr14:25783913-25784447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               538
               

               Alignm identity:
               331
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               138, 154
               

               Conread position:
               56-532
               

               Cow position:
               chr14:25784001-25784479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               332, 320
               

               Conread position:
               56-533
               

               Cow position:
               chr14:25783749-25784228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               300
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               143, 161
               

               Conread position:
               58-579
               

               Cow position:
               chr14:25836034-25836557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               526
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 147
               

               Conread position:
               60-326
               

               Cow position:
               chr14:25836960-25837226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               185
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               60-540
               

               Cow position:
               chr14:25836540-25837022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               422, 0
               

               Conread position:
               62-585
               

               Cow position:
               chr14:3127779-3127255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               529
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               327, 314
               

               Conread position:
               69-570
               

               Cow position:
               chr14:25836717-25837220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 68
               

               Conread position:
               69-579
               

               Cow position:
               chr14:25876233-25876745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               518
               

               Alignm identity:
               321
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               107, 72
               

               Conread position:
               69-581
               

               Cow position:
               chr14:25894944-25895458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               517
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               221, 226
               

               Conread position:
               69-583
               

               Cow position:
               chr14:25859266-25859783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               520
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               188, 183
               

               Conread position:
               72-458
               

               Cow position:
               chr14:3155410-3155796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               294, 302
               

               Conread position:
               72-530
               

               Cow position:
               chr14:25910752-25911208 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 38
               

               Conread position:
               72-532
               

               Cow position:
               chr14:25835712-25836174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               291
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               58, 66
               

               Conread position:
               72-532
               

               Cow position:
               chr14:25860277-25860739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 51
               

               Conread position:
               72-567
               

               Cow position:
               chr14:3155983-3156480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               500
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               401, 388
               

               Conread position:
               72-570
               

               Cow position:
               chr14:3101251-3100756 (view UCSC Genome Browser custom track)
               

               Alignm length:
               505
               

               Alignm identity:
               321
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               238, 191
               

               Conread position:
               72-570
               

               Cow position:
               chr14:25877328-25877828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 145
               

               Conread position:
               72-579
               

               Cow position:
               chr14:25859521-25860030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 64
               

               Conread position:
               72-579
               

               Cow position:
               chr14:25876572-25877081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               514
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 61
               

               Conread position:
               73-437
               

               Cow position:
               chr14:3061319-3060955 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               222
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               47, 64
               

               Conread position:
               73-530
               

               Cow position:
               chr14:25910833-25911292 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               139, 144
               

               Conread position:
               73-567
               

               Cow position:
               chr14:3061571-3061075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               502
               

               Alignm identity:
               299
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               293, 308
               

               Conread position:
               73-581
               

               Cow position:
               chr14:447591-448101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               514
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               315, 303
               

               Conread position:
               73-581
               

               Cow position:
               chr14:3081012-3080502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               516
               

               Alignm identity:
               321
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               55, 40
               

               Conread position:
               73-581
               

               Cow position:
               chr14:3155900-3156410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               512
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               390, 488
               

               Conread position:
               73-581
               

               Cow position:
               chr14:25836217-25836727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               409, 0
               

               Conread position:
               74-519
               

               Cow position:
               chr14:25783431-25783878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               276
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               51, 40
               

               Conread position:
               74-581
               

               Cow position:
               chr14:3128352-3127846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               316
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               97, 101
               

               Conread position:
               75-586
               

               Cow position:
               chr14:25783685-25784198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               519
               

               Alignm identity:
               324
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               125, 7
               

               Conread position:
               76-528
               

               Cow position:
               chr14:25795093-25794640 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               283
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               39, 48
               

               Conread position:
               82-581
               

               Cow position:
               chr14:3128179-3127678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               504
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               289, 307
               

               Conread position:
               82-582
               

               Cow position:
               chr14:25910517-25911010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               509
               

               Alignm identity:
               313
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               45, 37
               

               Conread position:
               88-418
               

               Cow position:
               chr14:3079989-3079659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               214
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               88-579
               

               Cow position:
               chr14:25876336-25876829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 129
               

               Conread position:
               88-581
               

               Cow position:
               chr14:3128005-3127510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               499
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               301, 288
               

               Conread position:
               88-601
               

               Cow position:
               chr14:433827-434340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               521
               

               Alignm identity:
               323
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               26, 35
               

               Conread position:
               91-578
               

               Cow position:
               chr14:25835647-25836138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               294
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               106, 126
               

               Conread position:
               94-582
               

               Cow position:
               chr14:680750-681240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               492
               

               Alignm identity:
               300
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               343, 355
               

               Conread position:
               96-581
               

               Cow position:
               chr14:447530-448017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               376, 370
               

               Conread position:
               103-583
               

               Cow position:
               chr14:25835911-25836394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               307
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               27, 33
               

               Conread position:
               127-528
               

               Cow position:
               chr14:25783316-25783719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               247
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               81, 93
               

               Conread position:
               133-583
               

               Cow position:
               chr14:3155387-3155839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 87
               

               Conread position:
               136-519
               

               Cow position:
               chr14:25795453-25795068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               235
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               159, 145
               

               Conread position:
               140-319
               

               Cow position:
               chr14:3156546-3156725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               130
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               59, 67
               

               Conread position:
               142-362
               

               Cow position:
               chr14:420630-420850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               151
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               199, 195
               

               Conread position:
               144-530
               

               Cow position:
               chr14:25859173-25859561 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               253
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               58, 85
               

               Conread position:
               144-579
               

               Cow position:
               chr14:25859257-25859694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 73
               

               Conread position:
               147-581
               

               Cow position:
               chr14:25894938-25895374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               273
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               333, 0
               

               Conread position:
               152-567
               

               Cow position:
               chr14:680220-680637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               252
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               72, 82
               

               Conread position:
               154-581
               

               Cow position:
               chr14:3061742-3061313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               266
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               319, 312
               

               Conread position:
               206-583
               

               Cow position:
               chr14:25876203-25876582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               237
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               67, 15
               

               Conread position:
               56-572
               

               Cow position:
               chr15:19139171-19138653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               524
               

               Alignm identity:
               313
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               244, 225
               

               Conread position:
               2-502
               

               Cow position:
               chr16:14628077-14627572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               318
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               9, 26
               

               Conread position:
               15-418
               

               Cow position:
               chr16:14627140-14626735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               264
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               40, 402
               

               Conread position:
               18-555
               

               Cow position:
               chr16:14627305-14626763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               545
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 116
               

               Conread position:
               49-578
               

               Cow position:
               chr16:14627607-14627076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               538
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 58
               

               Conread position:
               52-579
               

               Cow position:
               chr16:14627436-14626907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               531
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               158, 166
               

               Conread position:
               52-583
               

               Cow position:
               chr16:14627772-14627239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               537
               

               Alignm identity:
               330
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               235, 223
               

               Conread position:
               66-579
               

               Cow position:
               chr16:14627505-14626991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               521
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 16
               

               Conread position:
               72-335
               

               Cow position:
               chr16:14626996-14626733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-518
               

               Cow position:
               chr17:22473429-22473952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               528
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 16
               

               Conread position:
               7-533
               

               Cow position:
               chr17:22590255-22589722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               537
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 121
               

               Conread position:
               15-496
               

               Cow position:
               chr17:22589657-22589173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               309
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               36, 279
               

               Conread position:
               15-583
               

               Cow position:
               chr17:22552155-22551581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               576
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 554
               

               Conread position:
               18-571
               

               Cow position:
               chr17:22552068-22551510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               561
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 453
               

               Conread position:
               21-579
               

               Cow position:
               chr17:22473200-22473760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               565
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 39
               

               Conread position:
               23-587
               

               Cow position:
               chr17:22552904-22552333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               577
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 448
               

               Conread position:
               27-586
               

               Cow position:
               chr17:22590149-22589584 (view UCSC Genome Browser custom track)
               

               Alignm length:
               571
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 371
               

               Conread position:
               47-345
               

               Cow position:
               chr17:22498831-22498533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               47-548
               

               Cow position:
               chr17:22552624-22552121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               242, 258
               

               Conread position:
               47-579
               

               Cow position:
               chr17:22552288-22551754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               536
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               439, 518
               

               Conread position:
               50-528
               

               Cow position:
               chr17:22452150-22451669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               302
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               362, 367
               

               Conread position:
               50-579
               

               Cow position:
               chr17:22589871-22589340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               535
               

               Alignm identity:
               329
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               395, 386
               

               Conread position:
               51-531
               

               Cow position:
               chr17:22590290-22589808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               301
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               385, 398
               

               Conread position:
               51-546
               

               Cow position:
               chr17:22452233-22451736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               498
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               436, 0
               

               Conread position:
               52-335
               

               Cow position:
               chr17:22551779-22551496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               52-417
               

               Cow position:
               chr17:22551863-22551498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               241
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               205, 201
               

               Conread position:
               52-418
               

               Cow position:
               chr17:22498910-22498545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               232
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               31, 16
               

               Conread position:
               52-518
               

               Cow position:
               chr17:22589953-22589485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 155
               

               Conread position:
               52-548
               

               Cow position:
               chr17:22499162-22498664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               500
               

               Alignm identity:
               300
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               238, 219
               

               Conread position:
               52-576
               

               Cow position:
               chr17:22452316-22451790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               528
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               431, 513
               

               Conread position:
               52-579
               

               Cow position:
               chr17:22552451-22551922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               532
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               384, 417
               

               Conread position:
               52-582
               

               Cow position:
               chr17:22499330-22498798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               535
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               411, 420
               

               Conread position:
               52-584
               

               Cow position:
               chr17:22552955-22552421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               536
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               431, 514
               

               Conread position:
               64-579
               

               Cow position:
               chr17:22552691-22552174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               521
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               399, 408
               

               Conread position:
               70-523
               

               Cow position:
               chr17:22499396-22498941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               392, 403
               

               Conread position:
               70-583
               

               Cow position:
               chr17:22473171-22473680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               519
               

               Alignm identity:
               326
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               75, 31
               

               Conread position:
               72-579
               

               Cow position:
               chr17:22552515-22552006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               516
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 150
               

               Conread position:
               72-579
               

               Cow position:
               chr17:22553019-22552510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               391, 399
               

               Conread position:
               73-531
               

               Cow position:
               chr17:22553102-22552642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               233, 227
               

               Conread position:
               73-546
               

               Cow position:
               chr17:22473336-22473811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               387, 0
               

               Conread position:
               73-578
               

               Cow position:
               chr17:22473420-22473930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               411, 0
               

               Conread position:
               73-579
               

               Cow position:
               chr17:22452379-22451871 (view UCSC Genome Browser custom track)
               

               Alignm length:
               510
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               413, 493
               

               Conread position:
               126-581
               

               Cow position:
               chr17:22452410-22451953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 91
               

               Conread position:
               128-586
               

               Cow position:
               chr17:22553131-22552670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               294
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               165, 169
               

               Conread position:
               130-532
               

               Cow position:
               chr17:22590295-22589891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               257
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               356, 0
               

               Conread position:
               152-548
               

               Cow position:
               chr17:22499398-22499000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               259
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               48, 64
               

               Conread position:
               205-529
               

               Cow position:
               chr17:22553138-22552812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               211
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               231, 253
               

               Conread position:
               1-297
               

               Cow position:
               chr18:51873712-51874011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               192
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               45, 32
               

               Conread position:
               1-352
               

               Cow position:
               chr18:51969687-51970032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               220
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               57, 129
               

               Conread position:
               1-416
               

               Cow position:
               chr18:51874236-51874654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               254
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               1-447
               

               Cow position:
               chr18:50083798-50084247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 360
               

               Conread position:
               1-496
               

               Cow position:
               chr18:51752241-51751739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               504
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 135
               

               Conread position:
               1-497
               

               Cow position:
               chr18:43168056-43168555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               502
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               1-522
               

               Cow position:
               chr18:43093406-43092880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               529
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 25
               

               Conread position:
               1-522
               

               Cow position:
               chr18:51789631-51789103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               531
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 380
               

               Conread position:
               1-522
               

               Cow position:
               chr18:52427981-52428507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               532
               

               Alignm identity:
               326
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               16, 11
               

               Conread position:
               1-523
               

               Cow position:
               chr18:51368254-51367728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               530
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 32
               

               Conread position:
               1-530
               

               Cow position:
               chr18:42790976-42791510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               539
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 105
               

               Conread position:
               1-531
               

               Cow position:
               chr18:33064506-33063971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               539
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               1-536
               

               Cow position:
               chr18:51969035-51969557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               543
               

               Alignm identity:
               332
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               50, 189
               

               Conread position:
               1-540
               

               Cow position:
               chr18:40324536-40323992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               548
               

               Alignm identity:
               338
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               46, 25
               

               Conread position:
               1-545
               

               Cow position:
               chr18:42791900-42792451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               554
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 16
               

               Conread position:
               1-579
               

               Cow position:
               chr18:51789713-51789130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               586
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 355
               

               Conread position:
               1-581
               

               Cow position:
               chr18:40324620-40324035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               591
               

               Alignm identity:
               362
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               28, 21
               

               Conread position:
               1-581
               

               Cow position:
               chr18:52447120-52447705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               594
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 205
               

               Conread position:
               1-581
               

               Cow position:
               chr18:53636032-53635447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               589
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 9
               

               Conread position:
               1-581
               

               Cow position:
               chr18:56316061-56316646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               590
               

               Alignm identity:
               374
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 129
               

               Conread position:
               1-583
               

               Cow position:
               chr18:51368422-51367834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               592
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 355
               

               Conread position:
               1-583
               

               Cow position:
               chr18:51789461-51788873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               590
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 531
               

               Conread position:
               1-583
               

               Cow position:
               chr18:51839549-51838961 (view UCSC Genome Browser custom track)
               

               Alignm length:
               592
               

               Alignm identity:
               364
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               50, 444
               

               Conread position:
               1-583
               

               Cow position:
               chr18:52447372-52447960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               593
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 360
               

               Conread position:
               2-536
               

               Cow position:
               chr18:51969436-51969966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               544
               

               Alignm identity:
               342
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               19, 76
               

               Conread position:
               3-458
               

               Cow position:
               chr18:51839297-51838837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               284
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               3-536
               

               Cow position:
               chr18:43093322-43092783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               545
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 41
               

               Conread position:
               3-583
               

               Cow position:
               chr18:51765984-51765398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               591
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 286
               

               Conread position:
               4-522
               

               Cow position:
               chr18:33064839-33064316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               526
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 384
               

               Conread position:
               6-416
               

               Cow position:
               chr18:51969606-51970012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               265
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               15, 190
               

               Conread position:
               8-401
               

               Cow position:
               chr18:44397918-44397520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               249
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               13, 219
               

               Conread position:
               8-500
               

               Cow position:
               chr18:1418103-1418602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               502
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 64
               

               Conread position:
               8-578
               

               Cow position:
               chr18:41197592-41198171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               583
               

               Alignm identity:
               381
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 350
               

               Conread position:
               8-579
               

               Cow position:
               chr18:41197844-41198422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               580
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 463
               

               Conread position:
               8-579
               

               Cow position:
               chr18:42675220-42674642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               583
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 219
               

               Conread position:
               10-556
               

               Cow position:
               chr18:56329997-56329447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               552
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 6
               

               Conread position:
               12-581
               

               Cow position:
               chr18:50848440-50849016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               579
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 66
               

               Conread position:
               13-586
               

               Cow position:
               chr18:54967141-54967719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               585
               

               Alignm identity:
               344
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               11, 212
               

               Conread position:
               15-328
               

               Cow position:
               chr18:50246523-50246839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               43, 52
               

               Conread position:
               15-424
               

               Cow position:
               chr18:41198355-41198769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               271
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               6, 343
               

               Conread position:
               15-425
               

               Cow position:
               chr18:51839199-51838786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 35
               

               Conread position:
               15-426
               

               Cow position:
               chr18:56329237-56328824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               262
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               56, 45
               

               Conread position:
               15-447
               

               Cow position:
               chr18:50048777-50048342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               262
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               22, 7
               

               Conread position:
               15-480
               

               Cow position:
               chr18:51765384-51764916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               290
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               37, 210
               

               Conread position:
               15-496
               

               Cow position:
               chr18:33064072-33063588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 324
               

               Conread position:
               15-522
               

               Cow position:
               chr18:51400306-51400818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               514
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 61
               

               Conread position:
               15-535
               

               Cow position:
               chr18:51752057-51751530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               530
               

               Alignm identity:
               320
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               43, 241
               

               Conread position:
               15-536
               

               Cow position:
               chr18:51969133-51969639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               529
               

               Alignm identity:
               327
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               34, 61
               

               Conread position:
               15-540
               

               Cow position:
               chr18:51400390-51400920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               534
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 364
               

               Conread position:
               15-546
               

               Cow position:
               chr18:51874168-51874702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               535
               

               Alignm identity:
               314
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               15-548
               

               Cow position:
               chr18:51812438-51811900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               539
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               15-579
               

               Cow position:
               chr18:51789783-51789214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               575
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 116
               

               Conread position:
               15-579
               

               Cow position:
               chr18:51812944-51812373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               578
               

               Alignm identity:
               359
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               9, 118
               

               Conread position:
               15-580
               

               Cow position:
               chr18:40075133-40075703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               575
               

               Alignm identity:
               350
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               43, 268
               

               Conread position:
               16-586
               

               Cow position:
               chr18:42791579-42792155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               579
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 6
               

               Conread position:
               18-283
               

               Cow position:
               chr18:51789024-51788756 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               18-354
               

               Cow position:
               chr18:53560459-53560794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               216
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               14, 30
               

               Conread position:
               18-419
               

               Cow position:
               chr18:53586382-53585978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               263
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               34, 172
               

               Conread position:
               18-463
               

               Cow position:
               chr18:50083983-50084433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               286
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               34, 104
               

               Conread position:
               18-466
               

               Cow position:
               chr18:41948731-41948281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               282
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               31, 213
               

               Conread position:
               18-498
               

               Cow position:
               chr18:50099844-50100329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               296
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               15, 117
               

               Conread position:
               18-505
               

               Cow position:
               chr18:44184437-44183945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               498
               

               Alignm identity:
               314
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               40, 214
               

               Conread position:
               18-517
               

               Cow position:
               chr18:50059006-50058502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 453
               

               Conread position:
               18-522
               

               Cow position:
               chr18:41949067-41948558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 358
               

               Conread position:
               18-524
               

               Cow position:
               chr18:54967064-54967575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               517
               

               Alignm identity:
               325
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               27, 16
               

               Conread position:
               18-528
               

               Cow position:
               chr18:51766053-51765538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               521
               

               Alignm identity:
               330
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               28, 17
               

               Conread position:
               18-531
               

               Cow position:
               chr18:43022706-43022188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               524
               

               Alignm identity:
               323
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               33, 45
               

               Conread position:
               18-531
               

               Cow position:
               chr18:43093965-43093459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               523
               

               Alignm identity:
               328
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               34, 103
               

               Conread position:
               18-536
               

               Cow position:
               chr18:53559871-53560395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               525
               

               Alignm identity:
               318
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               18-538
               

               Cow position:
               chr18:52012162-52011637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               530
               

               Alignm identity:
               330
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               29, 16
               

               Conread position:
               18-538
               

               Cow position:
               chr18:53509519-53510043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               527
               

               Alignm identity:
               323
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               32, 122
               

               Conread position:
               18-542
               

               Cow position:
               chr18:33064237-33063708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               531
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 343
               

               Conread position:
               18-548
               

               Cow position:
               chr18:43167905-43168440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               536
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               18-567
               

               Cow position:
               chr18:56316330-56316884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               556
               

               Alignm identity:
               337
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               41, 451
               

               Conread position:
               18-580
               

               Cow position:
               chr18:53509435-53510000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               572
               

               Alignm identity:
               356
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               34, 122
               

               Conread position:
               18-581
               

               Cow position:
               chr18:50295217-50295785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               574
               

               Alignm identity:
               356
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               26, 15
               

               Conread position:
               18-582
               

               Cow position:
               chr18:53525889-53526456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               574
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 122
               

               Conread position:
               18-583
               

               Cow position:
               chr18:50059594-50059023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               577
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 290
               

               Conread position:
               18-583
               

               Cow position:
               chr18:50848868-50849439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               573
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 546
               

               Conread position:
               18-583
               

               Cow position:
               chr18:51812603-51812032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               575
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 8
               

               Conread position:
               18-583
               

               Cow position:
               chr18:55066913-55066343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               575
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 112
               

               Conread position:
               18-589
               

               Cow position:
               chr18:56128570-56129144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               578
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 41
               

               Conread position:
               20-522
               

               Cow position:
               chr18:50099089-50099597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 109
               

               Conread position:
               22-331
               

               Cow position:
               chr18:42827604-42827918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               195
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               22-587
               

               Cow position:
               chr18:42792172-42792744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               576
               

               Alignm identity:
               374
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 276
               

               Conread position:
               23-446
               

               Cow position:
               chr18:53498509-53498938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               281
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               7, 118
               

               Conread position:
               23-530
               

               Cow position:
               chr18:50083315-50083828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               516
               

               Alignm identity:
               311
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               19, 319
               

               Conread position:
               23-531
               

               Cow position:
               chr18:1418035-1418549 (view UCSC Genome Browser custom track)
               

               Alignm length:
               520
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 104
               

               Conread position:
               23-538
               

               Cow position:
               chr18:50271494-50272016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               525
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 83
               

               Conread position:
               23-540
               

               Cow position:
               chr18:55017997-55018520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               527
               

               Alignm identity:
               321
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               28, 85
               

               Conread position:
               23-549
               

               Cow position:
               chr18:42791081-42791613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               535
               

               Alignm identity:
               331
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               22, 95
               

               Conread position:
               23-562
               

               Cow position:
               chr18:42693678-42693136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               546
               

               Alignm identity:
               328
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               39, 341
               

               Conread position:
               23-563
               

               Cow position:
               chr18:56493790-56494338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               554
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 110
               

               Conread position:
               23-579
               

               Cow position:
               chr18:43093718-43093159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               563
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 44
               

               Conread position:
               23-581
               

               Cow position:
               chr18:44398238-44397674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               569
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 208
               

               Conread position:
               23-581
               

               Cow position:
               chr18:49032761-49032197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               568
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 197
               

               Conread position:
               25-530
               

               Cow position:
               chr18:42791839-42792350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 102
               

               Conread position:
               26-586
               

               Cow position:
               chr18:50848707-50849274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               571
               

               Alignm identity:
               374
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 101
               

               Conread position:
               28-540
               

               Cow position:
               chr18:53586540-53586023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               520
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 112
               

               Conread position:
               29-356
               

               Cow position:
               chr18:54993619-54993944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               216
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               87, 108
               

               Conread position:
               29-371
               

               Cow position:
               chr18:54980275-54980616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               218
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               95, 108
               

               Conread position:
               33-497
               

               Cow position:
               chr18:42792437-42792905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               35-418
               

               Cow position:
               chr18:14453718-14453335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               234
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               265, 16
               

               Conread position:
               36-533
               

               Cow position:
               chr18:54966917-54967416 (view UCSC Genome Browser custom track)
               

               Alignm length:
               503
               

               Alignm identity:
               309
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               13, 17
               

               Conread position:
               36-534
               

               Cow position:
               chr18:55523694-55524194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               505
               

               Alignm identity:
               316
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               164, 152
               

               Conread position:
               36-581
               

               Cow position:
               chr18:49022279-49022823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               551
               

               Alignm identity:
               322
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               32, 15
               

               Conread position:
               37-531
               

               Cow position:
               chr18:53559974-53560473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               503
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 92
               

               Conread position:
               39-440
               

               Cow position:
               chr18:53635235-53634835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               249
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               177, 181
               

               Conread position:
               39-540
               

               Cow position:
               chr18:41197544-41198047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               505
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               406, 400
               

               Conread position:
               41-506
               

               Cow position:
               chr18:42693405-42692938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               280
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               79, 95
               

               Conread position:
               41-532
               

               Cow position:
               chr18:51789250-51788757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               311
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               320, 312
               

               Conread position:
               41-536
               

               Cow position:
               chr18:51839338-51838841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               499
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               422, 431
               

               Conread position:
               41-581
               

               Cow position:
               chr18:49033075-49032533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               547
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 78
               

               Conread position:
               41-581
               

               Cow position:
               chr18:53586863-53586318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               551
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 99
               

               Conread position:
               42-528
               

               Cow position:
               chr18:50251058-50251543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               301
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               151, 78
               

               Conread position:
               42-580
               

               Cow position:
               chr18:42693992-42693452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               542
               

               Alignm identity:
               321
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               447, 519
               

               Conread position:
               42-581
               

               Cow position:
               chr18:42693908-42693367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               543
               

               Alignm identity:
               321
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               439, 523
               

               Conread position:
               42-581
               

               Cow position:
               chr18:43093530-43092989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               544
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               418, 425
               

               Conread position:
               42-581
               

               Cow position:
               chr18:52012303-52011762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               548
               

               Alignm identity:
               342
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               86, 81
               

               Conread position:
               42-581
               

               Cow position:
               chr18:53610411-53609870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               543
               

               Alignm identity:
               332
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               19, 32
               

               Conread position:
               43-536
               

               Cow position:
               chr18:51812830-51812332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               500
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 336
               

               Conread position:
               44-586
               

               Cow position:
               chr18:55017770-55018315 (view UCSC Genome Browser custom track)
               

               Alignm length:
               548
               

               Alignm identity:
               327
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               241, 253
               

               Conread position:
               45-415
               

               Cow position:
               chr18:50048660-50048295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               240
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               119, 128
               

               Conread position:
               45-416
               

               Cow position:
               chr18:50022176-50021802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               228
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               106, 165
               

               Conread position:
               45-485
               

               Cow position:
               chr18:50295415-50295855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               273
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               335, 331
               

               Conread position:
               45-503
               

               Cow position:
               chr18:50295499-50295953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               273
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               298, 304
               

               Conread position:
               45-530
               

               Cow position:
               chr18:50245716-50246203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               496
               

               Alignm identity:
               299
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               31, 44
               

               Conread position:
               45-586
               

               Cow position:
               chr18:49033407-49032863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               549
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 27
               

               Conread position:
               46-335
               

               Cow position:
               chr18:52428702-52428990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               195
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               145, 5
               

               Conread position:
               46-522
               

               Cow position:
               chr18:52428282-52428759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               298
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               145, 5
               

               Conread position:
               46-522
               

               Cow position:
               chr18:55008454-55008929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               285
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               239, 5
               

               Conread position:
               46-533
               

               Cow position:
               chr18:42985331-42984843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 5
               

               Conread position:
               46-536
               

               Cow position:
               chr18:53525753-53526244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               498
               

               Alignm identity:
               313
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               145, 5
               

               Conread position:
               46-537
               

               Cow position:
               chr18:53509299-53509791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               312
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               147, 5
               

               Conread position:
               46-540
               

               Cow position:
               chr18:42744488-42743993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               499
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 5
               

               Conread position:
               46-563
               

               Cow position:
               chr18:56329370-56328853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               521
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               330, 5
               

               Conread position:
               46-564
               

               Cow position:
               chr18:50083510-50084029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               526
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 66
               

               Conread position:
               47-417
               

               Cow position:
               chr18:53635395-53635026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               236
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               362, 0
               

               Conread position:
               47-519
               

               Cow position:
               chr18:54993134-54993607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               293
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               83, 5
               

               Conread position:
               47-529
               

               Cow position:
               chr18:50099288-50099772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 36
               

               Conread position:
               47-529
               

               Cow position:
               chr18:50099792-50100276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               299
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               144, 162
               

               Conread position:
               47-530
               

               Cow position:
               chr18:33064625-33064140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               342, 325
               

               Conread position:
               47-533
               

               Cow position:
               chr18:33092877-33092395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               306
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               163, 175
               

               Conread position:
               47-548
               

               Cow position:
               chr18:43167769-43168272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               505
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               315, 306
               

               Conread position:
               47-581
               

               Cow position:
               chr18:42791193-42791729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               539
               

               Alignm identity:
               329
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               240, 250
               

               Conread position:
               48-539
               

               Cow position:
               chr18:43175294-43174801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               496
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 20
               

               Conread position:
               48-581
               

               Cow position:
               chr18:42724526-42723991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               539
               

               Alignm identity:
               324
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               331, 344
               

               Conread position:
               49-341
               

               Cow position:
               chr18:1418317-1418609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               196
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               49-410
               

               Cow position:
               chr18:50246476-50246837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               236
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               233, 241
               

               Conread position:
               49-498
               

               Cow position:
               chr18:50271692-50272143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 24
               

               Conread position:
               49-508
               

               Cow position:
               chr18:43174957-43174496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               292
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               156, 173
               

               Conread position:
               49-519
               

               Cow position:
               chr18:42791363-42791835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               291
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               413, 420
               

               Conread position:
               49-522
               

               Cow position:
               chr18:42985077-42984602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               301
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               160, 173
               

               Conread position:
               49-524
               

               Cow position:
               chr18:56434444-56434921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               289
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               67, 77
               

               Conread position:
               49-531
               

               Cow position:
               chr18:44184487-44184003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               301
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               238, 226
               

               Conread position:
               49-581
               

               Cow position:
               chr18:42791699-42792233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               535
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               434, 0
               

               Conread position:
               49-583
               

               Cow position:
               chr18:50059224-50058688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               541
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 77
               

               Conread position:
               50-335
               

               Cow position:
               chr18:33063866-33063581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               187
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               250, 254
               

               Conread position:
               50-449
               

               Cow position:
               chr18:49021550-49021946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               248
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               65, 18
               

               Conread position:
               50-487
               

               Cow position:
               chr18:50281906-50282343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               278
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               219, 231
               

               Conread position:
               50-531
               

               Cow position:
               chr18:42674921-42674438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 149
               

               Conread position:
               50-555
               

               Cow position:
               chr18:50848651-50849158 (view UCSC Genome Browser custom track)
               

               Alignm length:
               509
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               159, 168
               

               Conread position:
               50-578
               

               Cow position:
               chr18:50246141-50246673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               539
               

               Alignm identity:
               342
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               78, 71
               

               Conread position:
               51-342
               

               Cow position:
               chr18:55524045-55524336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               198
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               77, 70
               

               Conread position:
               51-416
               

               Cow position:
               chr18:14453955-14453590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               229
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               249, 254
               

               Conread position:
               51-417
               

               Cow position:
               chr18:40324315-40323949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               236
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               51-441
               

               Cow position:
               chr18:49022879-49023270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               248
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               310, 305
               

               Conread position:
               51-451
               

               Cow position:
               chr18:42744232-42743832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 73
               

               Conread position:
               51-503
               

               Cow position:
               chr18:53586430-53585976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               285
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               412, 0
               

               Conread position:
               51-508
               

               Cow position:
               chr18:14453787-14453325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               276
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               306, 310
               

               Conread position:
               51-521
               

               Cow position:
               chr18:51789828-51789356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               388, 421
               

               Conread position:
               51-522
               

               Cow position:
               chr18:50059390-50058917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 86
               

               Conread position:
               51-522
               

               Cow position:
               chr18:55523373-55523846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               299
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               152, 169
               

               Conread position:
               51-528
               

               Cow position:
               chr18:40086199-40085728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               291
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               150, 157
               

               Conread position:
               51-529
               

               Cow position:
               chr18:43093605-43093125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               311, 302
               

               Conread position:
               51-530
               

               Cow position:
               chr18:40306654-40307135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               291
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               385, 402
               

               Conread position:
               51-531
               

               Cow position:
               chr18:42675256-42674774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 51
               

               Conread position:
               51-531
               

               Cow position:
               chr18:42724607-42724125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               289
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               206, 201
               

               Conread position:
               51-532
               

               Cow position:
               chr18:14453871-14453388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               492
               

               Alignm identity:
               303
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               173, 154
               

               Conread position:
               51-540
               

               Cow position:
               chr18:33064285-33063792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               496
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 86
               

               Conread position:
               51-541
               

               Cow position:
               chr18:40306402-40306894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               496
               

               Alignm identity:
               308
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               154, 169
               

               Conread position:
               51-545
               

               Cow position:
               chr18:50048906-50048408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               501
               

               Alignm identity:
               313
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               146, 152
               

               Conread position:
               51-562
               

               Cow position:
               chr18:49033233-49032721 (view UCSC Genome Browser custom track)
               

               Alignm length:
               514
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               432, 510
               

               Conread position:
               51-567
               

               Cow position:
               chr18:40306822-40307340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               519
               

               Alignm identity:
               316
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               433, 0
               

               Conread position:
               51-567
               

               Cow position:
               chr18:49032897-49032379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               521
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               249, 254
               

               Conread position:
               51-578
               

               Cow position:
               chr18:49022711-49023242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               534
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               385, 401
               

               Conread position:
               51-578
               

               Cow position:
               chr18:55523541-55524070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               534
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 56
               

               Conread position:
               51-579
               

               Cow position:
               chr18:50098956-50099486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               536
               

               Alignm identity:
               332
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               143, 134
               

               Conread position:
               51-581
               

               Cow position:
               chr18:33064705-33064173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               538
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 74
               

               Conread position:
               51-581
               

               Cow position:
               chr18:40324819-40324287 (view UCSC Genome Browser custom track)
               

               Alignm length:
               537
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               215, 210
               

               Conread position:
               51-581
               

               Cow position:
               chr18:49032813-49032281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               537
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 56
               

               Conread position:
               51-581
               

               Cow position:
               chr18:52012378-52011846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               536
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               338, 325
               

               Conread position:
               51-581
               

               Cow position:
               chr18:53559823-53560355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               536
               

               Alignm identity:
               332
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               64, 78
               

               Conread position:
               51-581
               

               Cow position:
               chr18:53586934-53586402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               536
               

               Alignm identity:
               326
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               149, 169
               

               Conread position:
               51-581
               

               Cow position:
               chr18:55523625-55524157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               536
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               242, 224
               

               Conread position:
               51-583
               

               Cow position:
               chr18:51368622-51368086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               537
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               51-587
               

               Cow position:
               chr18:55067045-55066506 (view UCSC Genome Browser custom track)
               

               Alignm length:
               544
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 86
               

               Conread position:
               52-362
               

               Cow position:
               chr18:42959738-42959428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               197
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               157, 170
               

               Conread position:
               52-362
               

               Cow position:
               chr18:52448098-52448409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               205
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               164, 170
               

               Conread position:
               52-366
               

               Cow position:
               chr18:43048662-43048348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               201
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               52-371
               

               Cow position:
               chr18:42724270-42723951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               198
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               205, 201
               

               Conread position:
               52-375
               

               Cow position:
               chr18:56248175-56247855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               206
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               52-412
               

               Cow position:
               chr18:51400850-51401210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 21
               

               Conread position:
               52-417
               

               Cow position:
               chr18:52448014-52448380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               243
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               248, 252
               

               Conread position:
               52-441
               

               Cow position:
               chr18:42959813-42959433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               241
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               141, 64
               

               Conread position:
               52-450
               

               Cow position:
               chr18:51789155-51788757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               52-451
               

               Cow position:
               chr18:43119921-43119522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               254
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               76, 55
               

               Conread position:
               52-462
               

               Cow position:
               chr18:42837534-42837124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               52-492
               

               Cow position:
               chr18:54968104-54968546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               272
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               64, 85
               

               Conread position:
               52-502
               

               Cow position:
               chr18:50250984-50251431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               276
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               74, 69
               

               Conread position:
               52-508
               

               Cow position:
               chr18:55523878-55524336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               287
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               146, 175
               

               Conread position:
               52-517
               

               Cow position:
               chr18:44240327-44240794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               293
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               248, 252
               

               Conread position:
               52-522
               

               Cow position:
               chr18:40324899-40324430 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               421, 20
               

               Conread position:
               52-522
               

               Cow position:
               chr18:49032644-49032172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 85
               

               Conread position:
               52-522
               

               Cow position:
               chr18:50030919-50030442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               288
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               121, 419
               

               Conread position:
               52-522
               

               Cow position:
               chr18:50059053-50058581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               291
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               434, 0
               

               Conread position:
               52-522
               

               Cow position:
               chr18:50083768-50084240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 77
               

               Conread position:
               52-522
               

               Cow position:
               chr18:50099629-50100101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               301
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               24, 31
               

               Conread position:
               52-522
               

               Cow position:
               chr18:50271611-50272083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               432, 0
               

               Conread position:
               52-522
               

               Cow position:
               chr18:55018282-55018755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               288
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               160, 168
               

               Conread position:
               52-522
               

               Cow position:
               chr18:56434195-56434667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               287
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               319, 306
               

               Conread position:
               52-523
               

               Cow position:
               chr18:40086532-40086061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               298
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               17, 22
               

               Conread position:
               52-523
               

               Cow position:
               chr18:42985494-42985021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               305
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               158, 152
               

               Conread position:
               52-523
               

               Cow position:
               chr18:50059641-50059168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               384, 391
               

               Conread position:
               52-528
               

               Cow position:
               chr18:42959981-42959512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               299
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               410, 226
               

               Conread position:
               52-528
               

               Cow position:
               chr18:43022921-43022444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               295
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               157, 170
               

               Conread position:
               52-528
               

               Cow position:
               chr18:44154301-44153830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               294
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               160, 170
               

               Conread position:
               52-528
               

               Cow position:
               chr18:44239991-44240469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               284
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               235, 223
               

               Conread position:
               52-528
               

               Cow position:
               chr18:44253657-44253192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               305
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               247, 252
               

               Conread position:
               52-529
               

               Cow position:
               chr18:50022337-50021855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               296
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               267, 325
               

               Conread position:
               52-529
               

               Cow position:
               chr18:50246311-50246790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 77
               

               Conread position:
               52-530
               

               Cow position:
               chr18:33093040-33092560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               235, 231
               

               Conread position:
               52-530
               

               Cow position:
               chr18:50083432-50083912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               298
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               432, 0
               

               Conread position:
               52-530
               

               Cow position:
               chr18:50099209-50099689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 74
               

               Conread position:
               52-530
               

               Cow position:
               chr18:54992802-54993282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               292
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               158, 168
               

               Conread position:
               52-530
               

               Cow position:
               chr18:54993558-54994035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               299
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               74, 56
               

               Conread position:
               52-531
               

               Cow position:
               chr18:40074921-40075402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               297
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               397, 0
               

               Conread position:
               52-531
               

               Cow position:
               chr18:41949198-41948717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               314, 321
               

               Conread position:
               52-531
               

               Cow position:
               chr18:43175038-43174557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               164, 170
               

               Conread position:
               52-531
               

               Cow position:
               chr18:44239823-44240304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               489
               

               Alignm identity:
               307
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               113, 121
               

               Conread position:
               52-532
               

               Cow position:
               chr18:43022837-43022355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               291
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               314, 320
               

               Conread position:
               52-532
               

               Cow position:
               chr18:43168026-43168508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               387, 397
               

               Conread position:
               52-536
               

               Cow position:
               chr18:51874045-51874524 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               303
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               78, 84
               

               Conread position:
               52-537
               

               Cow position:
               chr18:41198229-41198716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               328, 306
               

               Conread position:
               52-540
               

               Cow position:
               chr18:41949282-41948792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               222, 232
               

               Conread position:
               52-540
               

               Cow position:
               chr18:54979710-54980200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               296
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               16, 21
               

               Conread position:
               52-540
               

               Cow position:
               chr18:55008709-55009199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               294
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               62, 54
               

               Conread position:
               52-552
               

               Cow position:
               chr18:50246059-50246562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               509
               

               Alignm identity:
               323
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               67, 74
               

               Conread position:
               52-556
               

               Cow position:
               chr18:41948862-41948356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               509
               

               Alignm identity:
               315
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               169, 164
               

               Conread position:
               52-562
               

               Cow position:
               chr18:42792374-42792885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               515
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 71
               

               Conread position:
               52-563
               

               Cow position:
               chr18:43120089-43119577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               517
               

               Alignm identity:
               318
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               142, 135
               

               Conread position:
               52-563
               

               Cow position:
               chr18:43175206-43174694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               519
               

               Alignm identity:
               327
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               145, 155
               

               Conread position:
               52-576
               

               Cow position:
               chr18:50083684-50084210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               528
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               431, 514
               

               Conread position:
               52-576
               

               Cow position:
               chr18:50246227-50246753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               530
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 77
               

               Conread position:
               52-576
               

               Cow position:
               chr18:56494078-56494596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               528
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               155, 170
               

               Conread position:
               52-578
               

               Cow position:
               chr18:50848401-50848929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               531
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 23
               

               Conread position:
               52-578
               

               Cow position:
               chr18:53560160-53560688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               533
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 75
               

               Conread position:
               52-579
               

               Cow position:
               chr18:50059305-50058776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               533
               

               Alignm identity:
               328
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               141, 162
               

               Conread position:
               52-579
               

               Cow position:
               chr18:51368452-51367923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               532
               

               Alignm identity:
               320
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               141, 152
               

               Conread position:
               52-579
               

               Cow position:
               chr18:51400514-51401043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               532
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 21
               

               Conread position:
               52-579
               

               Cow position:
               chr18:51752269-51751740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               532
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               169, 163
               

               Conread position:
               52-579
               

               Cow position:
               chr18:52447762-52448291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               533
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               248, 252
               

               Conread position:
               52-581
               

               Cow position:
               chr18:42792038-42792569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               535
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 31
               

               Conread position:
               52-581
               

               Cow position:
               chr18:49033316-49032785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               533
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               408, 514
               

               Conread position:
               52-581
               

               Cow position:
               chr18:50021998-50021464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               538
               

               Alignm identity:
               316
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               62, 70
               

               Conread position:
               52-581
               

               Cow position:
               chr18:52447342-52447873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               537
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 16
               

               Conread position:
               52-581
               

               Cow position:
               chr18:54967938-54968467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               535
               

               Alignm identity:
               324
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               157, 89
               

               Conread position:
               52-581
               

               Cow position:
               chr18:54979962-54980493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               535
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               139, 150
               

               Conread position:
               52-581
               

               Cow position:
               chr18:56330205-56329674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               532
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               405, 0
               

               Conread position:
               52-583
               

               Cow position:
               chr18:52447678-52448212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               538
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               387, 397
               

               Conread position:
               52-586
               

               Cow position:
               chr18:42792122-42792659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               539
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               384, 397
               

               Conread position:
               52-586
               

               Cow position:
               chr18:43120173-43119636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               541
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 170
               

               Conread position:
               52-586
               

               Cow position:
               chr18:55008793-55009329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               538
               

               Alignm identity:
               312
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               145, 170
               

               Conread position:
               53-374
               

               Cow position:
               chr18:51873686-51874004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               202
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               157, 14
               

               Conread position:
               53-536
               

               Cow position:
               chr18:51752349-51751867 (view UCSC Genome Browser custom track)
               

               Alignm length:
               489
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 14
               

               Conread position:
               53-536
               

               Cow position:
               chr18:51766096-51765614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               492
               

               Alignm identity:
               310
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               107, 14
               

               Conread position:
               55-528
               

               Cow position:
               chr18:43023086-43022611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               290
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               381, 394
               

               Conread position:
               55-576
               

               Cow position:
               chr18:56247660-56247145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               527
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               230, 144
               

               Conread position:
               55-581
               

               Cow position:
               chr18:42675336-42674808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               532
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 74
               

               Conread position:
               56-532
               

               Cow position:
               chr18:56247575-56247107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 51
               

               Conread position:
               57-530
               

               Cow position:
               chr18:50848322-50848797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 23
               

               Conread position:
               60-535
               

               Cow position:
               chr18:51969331-51969806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               298
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               403, 278
               

               Conread position:
               61-374
               

               Cow position:
               chr18:53610056-53609743 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               202
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               208, 216
               

               Conread position:
               64-363
               

               Cow position:
               chr18:53497966-53498262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               193
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               135, 53
               

               Conread position:
               64-501
               

               Cow position:
               chr18:14453294-14452855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 69
               

               Conread position:
               64-522
               

               Cow position:
               chr18:41198073-41198533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               419, 0
               

               Conread position:
               64-532
               

               Cow position:
               chr18:40086352-40085892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               291
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               232, 136
               

               Conread position:
               64-548
               

               Cow position:
               chr18:42744303-42743817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               236, 241
               

               Conread position:
               64-579
               

               Cow position:
               chr18:50083276-50083793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               523
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               133, 156
               

               Conread position:
               64-580
               

               Cow position:
               chr18:50099557-50100075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               527
               

               Alignm identity:
               329
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               133, 140
               

               Conread position:
               64-586
               

               Cow position:
               chr18:42744555-42744030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               530
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               298, 294
               

               Conread position:
               65-579
               

               Cow position:
               chr18:44184891-44184375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               521
               

               Alignm identity:
               322
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               240, 220
               

               Conread position:
               66-581
               

               Cow position:
               chr18:42724844-42724327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               525
               

               Alignm identity:
               317
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               103, 116
               

               Conread position:
               67-579
               

               Cow position:
               chr18:40306167-40306680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               516
               

               Alignm identity:
               310
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               295, 7
               

               Conread position:
               68-581
               

               Cow position:
               chr18:53636130-53635615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               516
               

               Alignm identity:
               315
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               420, 0
               

               Conread position:
               68-581
               

               Cow position:
               chr18:56128035-56128550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               518
               

               Alignm identity:
               315
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               141, 152
               
69-447UCSC Genome Browser
               Conread position:
               
               

               Cow position:
               chr18:50049140-50048762 (view  custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               236
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               51, 60
               
69-538UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr18:50281757-50282229 (view  custom track)

               
               
               
Alignm length: 475

               
               
               
Alignm identity: 296

               
               
               
Alignm E-value: 1e-39

               
               
               
Alignm gaps (pig, cow): 51, 60
69-579UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr18:50245992-50246504 (view  custom track)

               
               
               
Alignm length: 520

               
               
               
Alignm identity: 331

               
               
               
Alignm E-value: 1.96182e-44

               
               
               
Alignm gaps (pig, cow): 45, 56

               
               
               Conread position:69-581
               
               
               Cow position:chr18:50022491-50021971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:321
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):47, 141

               
               
               Conread position:69-581
               
               
               Cow position:chr18:56329516-56329002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 68

               
               
               Conread position:70-419
               
               
               Cow position:chr18:44154030-44153689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):130, 12

               
               
               Conread position:70-532
               
               
               Cow position:chr18:55017880-55018344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:294
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):127, 152

               
               
               Conread position:72-319
               
               
               Cow position:chr18:51765156-51764909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:72-327
               
               
               Cow position:chr18:42837344-42837091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:72-338
               
               
               Cow position:chr18:51400954-51401220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):197, 209

               
               
               Conread position:72-354
               
               
               Cow position:chr18:55018554-55018838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):140, 150

               
               
               Conread position:72-355
               
               
               Cow position:chr18:53609961-53609679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):228, 232

               
               
               Conread position:72-391
               
               
               Cow position:chr18:44240515-44240834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):118, 148

               
               
               Conread position:72-404
               
               
               Cow position:chr18:42744127-42743795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):140, 150

               
               
               Conread position:72-410
               
               
               Cow position:chr18:53560432-53560770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):43, 54

               
               
               Conread position:72-439
               
               
               Cow position:chr18:53509240-53509607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:235
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):48, 65

               
               
               Conread position:72-476
               
               
               Cow position:chr18:51367593-51367188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:255
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):396, 0

               
               
               Conread position:72-500
               
               
               Cow position:chr18:44397933-44397503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:283
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):140, 150

               
               
               Conread position:72-522
               
               
               Cow position:chr18:52427551-52428003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:284
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):183, 170

               
               
               Conread position:72-522
               
               
               Cow position:chr18:52432900-52433352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:287
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):183, 170

               
               
               Conread position:72-522
               
               
               Cow position:chr18:54979814-54980266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:287
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):39, 35

               
               
               Conread position:72-522
               
               
               Cow position:chr18:55018218-55018670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:279
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):410, 0

               
               
               Conread position:72-528
               
               
               Cow position:chr18:40306507-40306965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:290
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):125, 134

               
               
               Conread position:72-528
               
               
               Cow position:chr18:51765743-51765286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:284
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):269, 7

               
               
               Conread position:72-529
               
               
               Cow position:chr18:50099733-50100192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:289
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):43, 53

               
               
               Conread position:72-530
               
               
               Cow position:chr18:53498139-53498602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:291
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):56, 50

               
               
               Conread position:72-530
               
               
               Cow position:chr18:54980234-54980693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:288
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):55, 36

               
               
               Conread position:72-531
               
               
               Cow position:chr18:42985222-42984761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:292
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):224, 203

               
               
               Conread position:72-531
               
               
               Cow position:chr18:43175352-43174893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 9

               
               
               Conread position:72-531
               
               
               Cow position:chr18:44398269-44397808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 150

               
               
               Conread position:72-531
               
               
               Cow position:chr18:53525694-53526155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:289
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):48, 65

               
               
               Conread position:72-532
               
               
               Cow position:chr18:44239759-44240222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:275
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):210, 216

               
               
               Conread position:72-536
               
               
               Cow position:chr18:54992906-54993372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:287
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):227, 232

               
               
               Conread position:72-540
               
               
               Cow position:chr18:51367761-51367291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:281
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):93, 112

               
               
               Conread position:72-540
               
               
               Cow position:chr18:51838784-51838319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:278
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):185, 178

               
               
               Conread position:72-540
               
               
               Cow position:chr18:54967790-54968258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:297
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):132, 148

               
               
               Conread position:72-540
               
               
               Cow position:chr18:54993326-54993796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:289
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):317, 281

               
               
               Conread position:72-544
               
               
               Cow position:chr18:54968040-54968515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:294
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):55, 36

               
               
               Conread position:72-546
               
               
               Cow position:chr18:1418004-1418480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 166

               
               
               Conread position:72-546
               
               
               Cow position:chr18:40324630-40324154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:304
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):25, 20

               
               
               Conread position:72-550
               
               
               Cow position:chr18:40306759-40307238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:298
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):408, 475

               
               
               Conread position:72-565
               
               
               Cow position:chr18:53560096-53560592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 57

               
               
               Conread position:72-565
               
               
               Cow position:chr18:54979478-54979974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:302
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):20, 26

               
               
               Conread position:72-568
               
               
               Cow position:chr18:43093992-43093506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:313
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):65, 60

               
               
               Conread position:72-578
               
               
               Cow position:chr18:51400702-51401212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):399, 394

               
               
               Conread position:72-579
               
               
               Cow position:chr18:41197829-41198338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 147

               
               
               Conread position:72-579
               
               
               Cow position:chr18:42674983-42674474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 150

               
               
               Conread position:72-579
               
               
               Cow position:chr18:42744715-42744206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 233

               
               
               Conread position:72-579
               
               
               Cow position:chr18:43094075-43093579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:309
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):62, 50

               
               
               Conread position:72-579
               
               
               Cow position:chr18:44398353-44397844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 148

               
               
               Conread position:72-579
               
               
               Cow position:chr18:51789471-51788962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):388, 397

               
               
               Conread position:72-579
               
               
               Cow position:chr18:56247727-56247226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 155

               
               
               Conread position:72-581
               
               
               Cow position:chr18:33064516-33064005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 224

               
               
               Conread position:72-581
               
               
               Cow position:chr18:53635790-53635279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 158

               
               
               Conread position:72-581
               
               
               Cow position:chr18:54992738-54993249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:312
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:72-583
               
               
               Cow position:chr18:51812630-51812116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 216

               
               
               Conread position:72-583
               
               
               Cow position:chr18:52447614-52448128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):307, 286

               
               
               Conread position:72-586
               
               
               Cow position:chr18:55008645-55009162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:308
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):48, 57

               
               
               Conread position:73-357
               
               
               Cow position:chr18:44153945-44153667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:73-357
               
               
               Cow position:chr18:53526199-53526482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):282, 236

               
               
               Conread position:73-496
               
               
               Cow position:chr18:43048725-43048302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:269
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):202, 215

               
               
               Conread position:73-505
               
               
               Cow position:chr18:42827491-42827925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):414, 0

               
               
               Conread position:73-508
               
               
               Cow position:chr18:56329260-56328822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):413, 0

               
               
               Conread position:73-518
               
               
               Cow position:chr18:44154112-44153672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:278
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):137, 131

               
               
               Conread position:73-522
               
               
               Cow position:chr18:33065019-33064568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 75

               
               
               Conread position:73-522
               
               
               Cow position:chr18:43175101-43174650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 232

               
               
               Conread position:73-522
               
               
               Cow position:chr18:44253804-44253354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:284
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):290, 285

               
               
               Conread position:73-523
               
               
               Cow position:chr18:40086601-40086145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:290
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):58, 155

               
               
               Conread position:73-523
               
               
               Cow position:chr18:52012020-52011568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:288
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):55, 46

               
               
               Conread position:73-523
               
               
               Cow position:chr18:53635453-53635002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:279
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):387, 420

               
               
               Conread position:73-531
               
               
               Cow position:chr18:40324377-40323918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:289
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):225, 232

               
               
               Conread position:73-531
               
               
               Cow position:chr18:43175437-43174977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:288
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):92, 100

               
               
               Conread position:73-531
               
               
               Cow position:chr18:44240096-44240556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:286
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):125, 130

               
               
               Conread position:73-532
               
               
               Cow position:chr18:44154451-44153987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:288
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):74, 152

               
               
               Conread position:73-532
               
               
               Cow position:chr18:44184631-44184170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:295
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):45, 63

               
               
               Conread position:73-533
               
               
               Cow position:chr18:42837849-42837387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 149

               
               
               Conread position:73-537
               
               
               Cow position:chr18:44154364-44153899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:292
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):389, 382

               
               
               Conread position:73-540
               
               
               Cow position:chr18:42744378-42743909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):410, 0

               
               
               Conread position:73-540
               
               
               Cow position:chr18:42837681-42837212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 146

               
               
               Conread position:73-548
               
               
               Cow position:chr18:42837597-42837120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 132

               
               
               Conread position:73-579
               
               
               Cow position:chr18:43022564-43022056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:312
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):195, 204

               
               
               Conread position:73-579
               
               
               Cow position:chr18:44240264-44240772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:317
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):304, 293

               
               
               Conread position:73-580
               
               
               Cow position:chr18:33064095-33063586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 57

               
               
               Conread position:73-580
               
               
               Cow position:chr18:52447111-52447620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:320
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):143, 153

               
               
               Conread position:73-581
               
               
               Cow position:chr18:33064935-33064425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):405, 0

               
               
               Conread position:73-581
               
               
               Cow position:chr18:56128460-56128970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:319
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):143, 155

               
               
               Conread position:73-581
               
               
               Cow position:chr18:56329680-56329170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):405, 0

               
               
               Conread position:73-581
               
               
               Cow position:chr18:56329764-56329254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):412, 0

               
               
               Conread position:73-581
               
               
               Cow position:chr18:56330016-56329506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 222

               
               
               Conread position:73-587
               
               
               Cow position:chr18:50848170-50848687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:331
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):95, 87

               
               
               Conread position:73-589
               
               
               Cow position:chr18:53610212-53609696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:322
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):128, 114

               
               
               Conread position:74-523
               
               
               Cow position:chr18:53586995-53586544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:282
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):49, 63

               
               
               Conread position:74-532
               
               
               Cow position:chr18:56493760-56494224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:279
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):10, 244

               
               
               Conread position:74-536
               
               
               Cow position:chr18:51839557-51839093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:289
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):302, 315

               
               
               Conread position:75-570
               
               
               Cow position:chr18:42960125-42959638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:314
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):124, 7

               
               
               Conread position:75-586
               
               
               Cow position:chr18:42837930-42837417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:320
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):218, 7

               
               
               Conread position:76-440
               
               
               Cow position:chr18:44253310-44252947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):223, 195

               
               
               Conread position:76-522
               
               
               Cow position:chr18:40306259-40306707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:283
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):397, 384

               
               
               Conread position:76-522
               
               
               Cow position:chr18:43120317-43119869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 129

               
               
               Conread position:76-523
               
               
               Cow position:chr18:52446864-52447311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):140, 33

               
               
               Conread position:76-533
               
               
               Cow position:chr18:43119981-43119522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 141

               
               
               Conread position:76-562
               
               
               Cow position:chr18:42694042-42693555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:302
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):117, 131

               
               
               Conread position:76-578
               
               
               Cow position:chr18:50031060-50030552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:317
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):211, 112

               
               
               Conread position:76-581
               
               
               Cow position:chr18:33093100-33092593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):379, 366

               
               
               Conread position:76-581
               
               
               Cow position:chr18:52446946-52447453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:322
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):127, 109

               
               
               Conread position:78-559
               
               
               Cow position:chr18:50098899-50099385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:298
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):38, 47

               
               
               Conread position:79-401
               
               
               Cow position:chr18:42984795-42984473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):130, 143

               
               
               Conread position:79-417
               
               
               Cow position:chr18:52428650-52428988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):218, 225

               
               
               Conread position:79-417
               
               
               Cow position:chr18:52433831-52434169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):218, 225

               
               
               Conread position:79-440
               
               
               Cow position:chr18:22634817-22635178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):48, 41

               
               
               Conread position:79-493
               
               
               Cow position:chr18:40306934-40307348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:251
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:79-519
               
               
               Cow position:chr18:41197500-41197942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):404, 0

               
               
               Conread position:79-522
               
               
               Cow position:chr18:51368509-51368064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:281
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):114, 136

               
               
               Conread position:79-522
               
               
               Cow position:chr18:52427894-52428339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:283
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):112, 126

               
               
               Conread position:79-522
               
               
               Cow position:chr18:52433243-52433688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):300, 294

               
               
               Conread position:79-522
               
               
               Cow position:chr18:52433495-52433940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:276
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):221, 225

               
               
               Conread position:79-548
               
               
               Cow position:chr18:53610542-53610071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:282
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):42, 28

               
               
               Conread position:79-579
               
               
               Cow position:chr18:52428482-52428984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:321
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):112, 126

               
               
               Conread position:79-579
               
               
               Cow position:chr18:52433663-52434165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:318
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):112, 126

               
               
               Conread position:79-581
               
               
               Cow position:chr18:1417927-1418431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 23

               
               
               Conread position:79-581
               
               
               Cow position:chr18:56247806-56247308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:324
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):15, 224

               
               
               Conread position:79-581
               
               
               Cow position:chr18:56493937-56494441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):310, 296

               
               
               Conread position:79-582
               
               
               Cow position:chr18:56494021-56494524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 151

               
               
               Conread position:82-531
               
               
               Cow position:chr18:54967047-54967498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:274
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):281, 276

               
               
               Conread position:82-531
               
               
               Cow position:chr18:54979572-54980023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:285
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):117, 124

               
               
               Conread position:82-531
               
               
               Cow position:chr18:55008571-55009022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:289
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):109, 130

               
               
               Conread position:82-563
               
               
               Cow position:chr18:55067098-55066616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 47

               
               
               Conread position:82-578
               
               
               Cow position:chr18:43120395-43119895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:310
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):187, 207

               
               
               Conread position:82-581
               
               
               Cow position:chr18:56315977-56316478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:306
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):115, 121

               
               
               Conread position:82-583
               
               
               Cow position:chr18:51765482-51764978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:308
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):364, 360

               
               
               Conread position:83-503
               
               
               Cow position:chr18:56248225-56247814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:266
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):405, 32

               
               
               Conread position:83-568
               
               
               Cow position:chr18:14454007-14453520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:311
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):133, 151

               
               
               Conread position:85-522
               
               
               Cow position:chr18:44398424-44397985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 135

               
               
               Conread position:85-540
               
               
               Cow position:chr18:43175593-43175136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:278
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):108, 137

               
               
               Conread position:88-336
               
               
               Cow position:chr18:50849193-50849441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:88-583
               
               
               Cow position:chr18:42827422-42827920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 35

               
               
               Conread position:90-579
               
               
               Cow position:chr18:51400132-51400623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:301
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):134, 142

               
               
               Conread position:92-522
               
               
               Cow position:chr18:49022668-49023100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:281
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):210, 203

               
               
               Conread position:93-522
               
               
               Cow position:chr18:54967646-54968072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:272
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):113, 41

               
               
               Conread position:94-580
               
               
               Cow position:chr18:40075131-40075619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:303
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):379, 372

               
               
               Conread position:94-581
               
               
               Cow position:chr18:55523332-55523821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:321
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):26, 35

               
               
               Conread position:94-598
               
               
               Cow position:chr18:53635516-53635013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):381, 471

               
               
               Conread position:97-587
               
               
               Cow position:chr18:40306616-40307109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 40

               
               
               Conread position:99-523
               
               
               Cow position:chr18:43167737-43168163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:271
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):21, 32

               
               
               Conread position:101-548
               
               
               Cow position:chr18:51367649-51367198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:289
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):12, 104

               
               
               Conread position:104-579
               
               
               Cow position:chr18:50059674-50059196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 255

               
               
               Conread position:105-531
               
               
               Cow position:chr18:44398569-44398144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):257, 60

               
               
               Conread position:118-363
               
               
               Cow position:chr18:50021676-50021432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):160, 10

               
               
               Conread position:126-516
               
               
               Cow position:chr18:56434102-56434493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):172, 10

               
               
               Conread position:126-565
               
               
               Cow position:chr18:54979448-54979890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):240, 248

               
               
               Conread position:126-581
               
               
               Cow position:chr18:55497650-55497193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):262, 250

               
               
               Conread position:126-583
               
               
               Cow position:chr18:49022618-49023077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:291
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):85, 102

               
               
               Conread position:126-586
               
               
               Cow position:chr18:54992708-54993171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:283
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):142, 155

               
               
               Conread position:130-532
               
               
               Cow position:chr18:42960323-42959919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:255
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):79, 104

               
               
               Conread position:130-579
               
               
               Cow position:chr18:50049251-50048796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:285
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):74, 170

               
               
               Conread position:132-583
               
               
               Cow position:chr18:14454042-14453588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:284
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):67, 90

               
               
               Conread position:135-532
               
               
               Cow position:chr18:44184905-44184506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):65, 70

               
               
               Conread position:135-576
               
               
               Cow position:chr18:42790945-42791388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:282
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):149, 140

               
               
               Conread position:136-491
               
               
               Cow position:chr18:56267478-56267123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):65, 61

               
               
               Conread position:136-565
               
               
               Cow position:chr18:51874045-51874470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:271
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):327, 113

               
               
               Conread position:141-531
               
               
               Cow position:chr18:42985573-42985181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:244
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):69, 81

               
               
               Conread position:141-579
               
               
               Cow position:chr18:52432885-52433325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:259
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):319, 328

               
               
               Conread position:141-583
               
               
               Cow position:chr18:52427536-52427980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:261
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):319, 328

               
               
               Conread position:141-586
               
               
               Cow position:chr18:44398452-44398004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 46

               
               
               Conread position:142-458
               
               
               Cow position:chr18:51873689-51874004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):304, 18

               
               
               Conread position:142-522
               
               
               Cow position:chr18:22634628-22635010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):133, 148

               
               
               Conread position:142-522
               
               
               Cow position:chr18:33093118-33092736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:142-531
               
               
               Cow position:chr18:44239745-44240136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:242
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):308, 320

               
               
               Conread position:142-536
               
               
               Cow position:chr18:51766093-51765698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):294, 15

               
               
               Conread position:142-581
               
               
               Cow position:chr18:50281744-50282187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:280
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):7, 87

               
               
               Conread position:144-540
               
               
               Cow position:chr18:42744727-42744329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):50, 41

               
               
               Conread position:146-579
               
               
               Cow position:chr18:42827397-42827831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):336, 6

               
               
               Conread position:148-557
               
               
               Cow position:chr18:42724594-42724183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:261
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):193, 188

               
               
               Conread position:148-581
               
               
               Cow position:chr18:55523302-55523737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:283
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):54, 64

               
               
               Conread position:148-587
               
               
               Cow position:chr18:55067116-55066674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:281
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):56, 79

               
               
               Conread position:150-583
               
               
               Cow position:chr18:50245989-50246425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:277
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):46, 54

               
               
               Conread position:151-522
               
               
               Cow position:chr18:44253894-44253521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):131, 139

               
               
               Conread position:151-523
               
               
               Cow position:chr18:41949351-41948977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):335, 0

               
               
               Conread position:152-582
               
               
               Cow position:chr18:14453290-14452858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 153

               
               
               Conread position:153-582
               
               
               Cow position:chr18:40324966-40324538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):71, 52

               
               
               Conread position:154-581
               
               
               Cow position:chr18:51400280-51400709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:272
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):292, 283

               
               
               Conread position:156-585
               
               
               Cow position:chr18:50271463-50271892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:265
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):128, 140

               
               
               Conread position:159-563
               
               
               Cow position:chr18:53587080-53586673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:245
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):27, 222

               
               
               Conread position:169-563
               
               
               Cow position:chr18:43175593-43175198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:238
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):313, 392

               
               
               Conread position:222-533
               
               
               Cow position:chr18:53525675-53525989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:208
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):11, 23

               
               
               Conread position:222-581
               
               
               Cow position:chr18:53509221-53509583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):11, 23

               
               
               Conread position:232-541
               
               
               Cow position:chr18:56248165-56247855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):256, 0

               
               
               Conread position:233-530
               
               
               Cow position:chr18:50281670-50281968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):136, 9

               
               
               Conread position:240-579
               
               
               Cow position:chr18:42837934-42837593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):53, 65

               
               
               Conread position:247-579
               
               
               Cow position:chr18:41197500-41197834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):117, 111

               
               
               Conread position:303-562
               
               
               Cow position:chr18:56330206-56329946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):70, 80

               
               
               Conread position:309-581
               
               
               Cow position:chr18:43048741-43048467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):174, 257

               
               
               Conread position:1-546
               
               
               Cow position:chr19:20677879-20678429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:332
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):50, 287

               
               
               Conread position:1-579
               
               
               Cow position:chr19:23649482-23650065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 563

               
               
               Conread position:3-555
               
               
               Cow position:chr19:23649902-23650461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:353
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):18, 219

               
               
               Conread position:15-541
               
               
               Cow position:chr19:14940518-14941049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 206

               
               
               Conread position:15-567
               
               
               Cow position:chr19:23597139-23597696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:22-579
               
               
               Cow position:chr19:14940188-14940751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 541

               
               
               Conread position:23-557
               
               
               Cow position:chr19:14959536-14959011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:335
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):21, 230

               
               
               Conread position:23-579
               
               
               Cow position:chr19:14940021-14940583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:41-541
               
               
               Cow position:chr19:23649357-23649859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):335, 339

               
               
               Conread position:42-576
               
               
               Cow position:chr19:23649778-23650314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 178

               
               
               Conread position:46-407
               
               
               Cow position:chr19:23650119-23650479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:236
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):163, 5

               
               
               Conread position:47-407
               
               
               Cow position:chr19:14960080-14959722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:234
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):321, 267

               
               
               Conread position:48-522
               
               
               Cow position:chr19:20678013-20678489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:298
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):160, 183

               
               
               Conread position:49-464
               
               
               Cow position:chr19:14948404-14947990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:276
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):163, 173

               
               
               Conread position:49-532
               
               
               Cow position:chr19:14960244-14959763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:49-563
               
               
               Cow position:chr19:14960328-14959815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):434, 175

               
               
               Conread position:50-540
               
               
               Cow position:chr19:23614588-23615080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 171

               
               
               Conread position:50-579
               
               
               Cow position:chr19:23613580-23614111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 30

               
               
               Conread position:51-381
               
               
               Cow position:chr19:14948318-14947988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):165, 172

               
               
               Conread position:51-586
               
               
               Cow position:chr19:14940389-14940927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 33

               
               
               Conread position:52-405
               
               
               Cow position:chr19:43569990-43569641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):64, 71

               
               
               Conread position:52-411
               
               
               Cow position:chr19:14959176-14958823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:52-412
               
               
               Cow position:chr19:23614758-23615116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:240
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):154, 136

               
               
               Conread position:52-498
               
               
               Cow position:chr19:23649704-23650152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:281
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):292, 298

               
               
               Conread position:52-530
               
               
               Cow position:chr19:23613750-23614230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):385, 397

               
               
               Conread position:52-579
               
               
               Cow position:chr19:23596930-23597456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):384, 106

               
               
               Conread position:52-579
               
               
               Cow position:chr19:23614506-23615035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 49

               
               
               Conread position:52-581
               
               
               Cow position:chr19:14940474-14941005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):317, 307

               
               
               Conread position:52-581
               
               
               Cow position:chr19:23614170-23614701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 217

               
               
               Conread position:52-584
               
               
               Cow position:chr19:14960409-14959875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):336, 249

               
               
               Conread position:55-579
               
               
               Cow position:chr19:23596849-23597372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):334, 184

               
               
               Conread position:57-412
               
               
               Cow position:chr19:20635394-20635039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):62, 66

               
               
               Conread position:57-522
               
               
               Cow position:chr19:14959582-14959124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:289
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):432, 274

               
               
               Conread position:57-581
               
               
               Cow position:chr19:20635646-20635120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):311, 329

               
               
               Conread position:62-578
               
               
               Cow position:chr19:23613339-23613860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 159

               
               
               Conread position:63-530
               
               
               Cow position:chr19:20677860-20678329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:296
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):65, 53

               
               
               Conread position:69-546
               
               
               Cow position:chr19:14960476-14959999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 15

               
               
               Conread position:69-557
               
               
               Cow position:chr19:23649469-23649959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):320, 310

               
               
               Conread position:70-532
               
               
               Cow position:chr19:20677448-20677911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:280
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):220, 12

               
               
               Conread position:72-328
               
               
               Cow position:chr19:23614862-23615118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):247, 252

               
               
               Conread position:72-341
               
               
               Cow position:chr19:20635295-20635026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:72-377
               
               
               Cow position:chr19:14940746-14941051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):198, 205

               
               
               Conread position:72-415
               
               
               Cow position:chr19:14959650-14959308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:72-457
               
               
               Cow position:chr19:23597367-23597752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):341, 366

               
               
               Conread position:72-496
               
               
               Cow position:chr19:20678289-20678713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:263
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):290, 286

               
               
               Conread position:72-522
               
               
               Cow position:chr19:20677533-20677985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:274
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):391, 0

               
               
               Conread position:72-531
               
               
               Cow position:chr19:23613518-23613979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 148

               
               
               Conread position:72-532
               
               
               Cow position:chr19:20678121-20678583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:292
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):64, 54

               
               
               Conread position:72-534
               
               
               Cow position:chr19:23614106-23614570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 113

               
               
               Conread position:72-540
               
               
               Cow position:chr19:23614358-23614828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 30

               
               
               Conread position:72-579
               
               
               Cow position:chr19:14939990-14940499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):411, 0

               
               
               Conread position:72-579
               
               
               Cow position:chr19:23597115-23597624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):317, 311

               
               
               Conread position:72-579
               
               
               Cow position:chr19:23649304-23649813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 43

               
               
               Conread position:72-581
               
               
               Cow position:chr19:20677785-20678296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 211

               
               
               Conread position:72-581
               
               
               Cow position:chr19:23613434-23613945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):227, 232

               
               
               Conread position:72-587
               
               
               Cow position:chr19:20635547-20635031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 145

               
               
               Conread position:73-495
               
               
               Cow position:chr19:14940663-14941085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:73-496
               
               
               Cow position:chr19:23614695-23615118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 112

               
               
               Conread position:73-503
               
               
               Cow position:chr19:43570221-43569789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:284
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):148, 143

               
               
               Conread position:73-522
               
               
               Cow position:chr19:43570137-43569690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:284
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):126, 130

               
               
               Conread position:73-531
               
               
               Cow position:chr19:23614023-23614483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):365, 397

               
               
               Conread position:73-579
               
               
               Cow position:chr19:43570379-43569881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:319
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):196, 101

               
               
               Conread position:76-522
               
               
               Cow position:chr19:23614446-23614894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 47

               
               
               Conread position:83-440
               
               
               Cow position:chr19:14948453-14948097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:234
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:94-529
               
               
               Cow position:chr19:20677639-20678076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:278
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):97, 118

               
               
               Conread position:130-583
               
               
               Cow position:chr19:23596840-23597293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:286
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):57, 69

               
               
               Conread position:135-497
               
               
               Cow position:chr19:14959670-14959308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):254, 19

               
               
               Conread position:135-579
               
               
               Cow position:chr19:23649283-23649729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:290
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):78, 64

               
               
               Conread position:136-592
               
               
               Cow position:chr19:43570242-43569782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:291
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):230, 235

               
               
               Conread position:142-531
               
               
               Cow position:chr19:14959254-14958869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):341, 133

               
               
               Conread position:147-581
               
               
               Cow position:chr19:14948471-14948038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:282
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):242, 22

               
               
               Conread position:148-581
               
               
               Cow position:chr19:20677441-20677876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:263
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):161, 137

               
               
               Conread position:154-578
               
               
               Cow position:chr19:14939988-14940414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:279
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):117, 132

               
               
               Conread position:169-578
               
               
               Cow position:chr19:43570450-43570048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):24, 53

               
               
               Conread position:1-415
               
               
               Cow position:chr2:78755930-78756346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):51, 184

               
               
               Conread position:4-579
               
               
               Cow position:chr2:82799707-82800287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 30

               
               
               Conread position:7-576
               
               
               Cow position:chr2:5874916-5874340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:360
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):9, 205

               
               
               Conread position:10-590
               
               
               Cow position:chr2:48689603-48689022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 195

               
               
               Conread position:15-458
               
               
               Cow position:chr2:82799970-82800416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:17-582
               
               
               Cow position:chr2:78755862-78756429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:351
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):37, 252

               
               
               Conread position:18-320
               
               
               Cow position:chr2:82800141-82800446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:18-532
               
               
               Cow position:chr2:78755195-78755710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:312
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):35, 142

               
               
               Conread position:18-581
               
               
               Cow position:chr2:82799553-82800121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 191

               
               
               Conread position:26-437
               
               
               Cow position:chr2:5874559-5874145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:255
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):27, 260

               
               
               Conread position:42-581
               
               
               Cow position:chr2:5875128-5874587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:329
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):246, 254

               
               
               Conread position:46-581
               
               
               Cow position:chr2:82799837-82800373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):247, 5

               
               
               Conread position:50-530
               
               
               Cow position:chr2:78754240-78754719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:313
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):126, 114

               
               
               Conread position:51-404
               
               
               Cow position:chr2:82800093-82800446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:51-552
               
               
               Cow position:chr2:86465749-86466250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:309
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):204, 185

               
               
               Conread position:51-581
               
               
               Cow position:chr2:82799505-82800037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):338, 328

               
               
               Conread position:52-536
               
               
               Cow position:chr2:78754896-78755381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 238

               
               
               Conread position:52-581
               
               
               Cow position:chr2:78754492-78755007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:334
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):432, 198

               
               
               Conread position:69-578
               
               
               Cow position:chr2:78754829-78755341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 213

               
               
               Conread position:73-441
               
               
               Cow position:chr2:86465519-86465887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:79-576
               
               
               Cow position:chr2:86465357-86465856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:312
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):38, 28

               
               
               Conread position:82-503
               
               
               Cow position:chr2:78755596-78756017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:258
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):202, 71

               
               
               Conread position:83-556
               
               
               Cow position:chr2:82799453-82799928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 218

               
               
               Conread position:83-582
               
               
               Cow position:chr2:86465109-86465612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:314
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):148, 157

               
               
               Conread position:86-522
               
               
               Cow position:chr2:78754442-78754864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:270
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):198, 204

               
               
               Conread position:93-588
               
               
               Cow position:chr2:5875161-5874663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:296
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):209, 202

               
               
               Conread position:126-532
               
               
               Cow position:chr2:86465740-86466148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:252
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):193, 201

               
               
               Conread position:126-581
               
               
               Cow position:chr2:86465320-86465777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:270
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):345, 328

               
               
               Conread position:135-579
               
               
               Cow position:chr2:78754811-78755257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:281
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):301, 323

               
               
               Conread position:158-519
               
               
               Cow position:chr2:5875180-5874817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):278, 318

               
               
               Conread position:349-584
               
               
               Cow position:chr2:82799467-82799704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):135, 212

               
               
               Conread position:1-251
               
               
               Cow position:chr21:12659766-12660019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):48, 238

               
               
               Conread position:1-768
               
               
               Cow position:chr21:34223123-34222353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:771
               
               
               Alignm identity:692
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):484, 0

               
               
               Conread position:18-541
               
               
               Cow position:chr21:12608903-12608375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:530
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 269

               
               
               Conread position:19-495
               
               
               Cow position:chr21:12659532-12660013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:305
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):27, 15

               
               
               Conread position:19-540
               
               
               Cow position:chr21:12659196-12659722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 15

               
               
               Conread position:19-557
               
               
               Cow position:chr21:12659028-12659571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:40-581
               
               
               Cow position:chr21:12659388-12659931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 112

               
               
               Conread position:41-578
               
               
               Cow position:chr21:12608709-12608170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):439, 0

               
               
               Conread position:47-318
               
               
               Cow position:chr21:12608199-12607928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:47-363
               
               
               Cow position:chr21:12608283-12607967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):79, 66

               
               
               Conread position:47-590
               
               
               Cow position:chr21:12608535-12607991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 205

               
               
               Conread position:48-567
               
               
               Cow position:chr21:12658976-12659497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):436, 0

               
               
               Conread position:72-486
               
               
               Cow position:chr21:12608342-12607928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):391, 401

               
               
               Conread position:73-581
               
               
               Cow position:chr21:12658833-12659343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):410, 492

               
               
               Conread position:88-566
               
               
               Cow position:chr21:12608914-12608435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):276, 304

               
               
               Conread position:127-581
               
               
               Cow position:chr21:12658803-12659259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:290
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):73, 87

               
               
               Conread position:171-581
               
               
               Cow position:chr21:12608915-12608503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):314, 394

               
               
               Conread position:1-410
               
               
               Cow position:chr22:12385320-12384908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:267
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):38, 55

               
               
               Conread position:1-508
               
               
               Cow position:chr22:12419017-12418505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 472

               
               
               Conread position:1-522
               
               
               Cow position:chr22:12432066-12431540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 25

               
               
               Conread position:1-522
               
               
               Cow position:chr22:12432150-12431624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 104

               
               
               Conread position:1-534
               
               
               Cow position:chr22:12399414-12398876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 471

               
               
               Conread position:1-535
               
               
               Cow position:chr22:46654191-46654730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:342
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):11, 16

               
               
               Conread position:1-579
               
               
               Cow position:chr22:12399666-12399083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 218

               
               
               Conread position:1-581
               
               
               Cow position:chr22:12432318-12431733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:362
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):48, 402

               
               
               Conread position:2-536
               
               
               Cow position:chr22:12476128-12475587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 468

               
               
               Conread position:2-540
               
               
               Cow position:chr22:12499131-12499676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 472

               
               
               Conread position:3-540
               
               
               Cow position:chr22:12399330-12398786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 35

               
               
               Conread position:12-530
               
               
               Cow position:chr22:11640793-11641318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 208

               
               
               Conread position:15-365
               
               
               Cow position:chr22:11701293-11701646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):13, 112

               
               
               Conread position:15-414
               
               
               Cow position:chr22:12458164-12457760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:265
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):43, 124

               
               
               Conread position:15-420
               
               
               Cow position:chr22:11641050-11641458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:263
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):37, 125

               
               
               Conread position:15-522
               
               
               Cow position:chr22:12458584-12458072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 216

               
               
               Conread position:15-531
               
               
               Cow position:chr22:14429505-14430023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:308
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):36, 54

               
               
               Conread position:15-540
               
               
               Cow position:chr22:12458332-12457802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 293

               
               
               Conread position:15-563
               
               
               Cow position:chr22:12419272-12418703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:324
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):38, 286

               
               
               Conread position:15-579
               
               
               Cow position:chr22:12476281-12475712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 346

               
               
               Conread position:15-579
               
               
               Cow position:chr22:12498978-12499547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 346

               
               
               Conread position:18-319
               
               
               Cow position:chr22:12399061-12398757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:18-327
               
               
               Cow position:chr22:12385219-12384907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:18-528
               
               
               Cow position:chr22:12431545-12431030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 427

               
               
               Conread position:18-532
               
               
               Cow position:chr22:12476194-12475675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 454

               
               
               Conread position:18-532
               
               
               Cow position:chr22:12498897-12499416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:23-531
               
               
               Cow position:chr22:12458409-12457895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 201

               
               
               Conread position:23-532
               
               
               Cow position:chr22:12476358-12475843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:35-581
               
               
               Cow position:chr22:12431860-12431313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:339
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):81, 10

               
               
               Conread position:42-353
               
               
               Cow position:chr22:12418805-12418494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):155, 160

               
               
               Conread position:46-532
               
               
               Cow position:chr22:12431346-12430858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):400, 396

               
               
               Conread position:46-578
               
               
               Cow position:chr22:12399701-12399168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):243, 5

               
               
               Conread position:50-352
               
               
               Cow position:chr22:12430922-12430620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:50-486
               
               
               Cow position:chr22:12418881-12418445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):422, 416

               
               
               Conread position:51-531
               
               
               Cow position:chr22:14468038-14468520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:295
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):148, 169

               
               
               Conread position:51-582
               
               
               Cow position:chr22:11640669-11641202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 16

               
               
               Conread position:51-586
               
               
               Cow position:chr22:11640753-11641291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):422, 417

               
               
               Conread position:52-245
               
               
               Cow position:chr22:12475485-12475292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):61, 50

               
               
               Conread position:52-245
               
               
               Cow position:chr22:12499774-12499967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):163, 168

               
               
               Conread position:52-481
               
               
               Cow position:chr22:12458208-12457779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:262
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):147, 170

               
               
               Conread position:52-528
               
               
               Cow position:chr22:12431424-12430945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 8

               
               
               Conread position:52-529
               
               
               Cow position:chr22:12431088-12430609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 151

               
               
               Conread position:52-530
               
               
               Cow position:chr22:12431676-12431196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):393, 387

               
               
               Conread position:52-530
               
               
               Cow position:chr22:14430046-14430526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:298
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):160, 152

               
               
               Conread position:52-579
               
               
               Cow position:chr22:12475905-12475376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 170

               
               
               Conread position:52-579
               
               
               Cow position:chr22:12475989-12475460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 28

               
               
               Conread position:52-579
               
               
               Cow position:chr22:12499354-12499883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 168

               
               
               Conread position:55-578
               
               
               Cow position:chr22:12419313-12418769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:306
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):294, 540

               
               
               Conread position:56-567
               
               
               Cow position:chr22:46654165-46654678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 121

               
               
               Conread position:56-572
               
               
               Cow position:chr22:46654333-46654850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):432, 501

               
               
               Conread position:63-530
               
               
               Cow position:chr22:14429721-14430190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:296
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):373, 386

               
               
               Conread position:64-426
               
               
               Cow position:chr22:14430562-14430924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):70, 51

               
               
               Conread position:64-534
               
               
               Cow position:chr22:12385508-12385034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 38

               
               
               Conread position:67-581
               
               
               Cow position:chr22:12385674-12385155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 141

               
               
               Conread position:68-579
               
               
               Cow position:chr22:12432500-12431987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:320
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):420, 480

               
               
               Conread position:72-440
               
               
               Cow position:chr22:14468227-14468595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):64, 35

               
               
               Conread position:72-479
               
               
               Cow position:chr22:12385330-12384923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):390, 400

               
               
               Conread position:72-485
               
               
               Cow position:chr22:12430984-12430571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:257
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):36, 47

               
               
               Conread position:72-500
               
               
               Cow position:chr22:12475717-12475287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):290, 286

               
               
               Conread position:72-500
               
               
               Cow position:chr22:12499542-12499972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):401, 389

               
               
               Conread position:72-522
               
               
               Cow position:chr22:14430318-14430770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:279
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):64, 52

               
               
               Conread position:72-530
               
               
               Cow position:chr22:14467977-14468435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:294
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):47, 15

               
               
               Conread position:72-531
               
               
               Cow position:chr22:14429898-14430359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:301
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):40, 30

               
               
               Conread position:72-532
               
               
               Cow position:chr22:12431740-12431278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):411, 451

               
               
               Conread position:72-579
               
               
               Cow position:chr22:46654097-46654606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:325
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):30, 22

               
               
               Conread position:72-580
               
               
               Cow position:chr22:12431908-12431398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):374, 370

               
               
               Conread position:73-450
               
               
               Cow position:chr22:11666532-11666910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):41, 46

               
               
               Conread position:73-499
               
               
               Cow position:chr22:11641027-11641455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 204

               
               
               Conread position:73-522
               
               
               Cow position:chr22:12431235-12430784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 292

               
               
               Conread position:73-522
               
               
               Cow position:chr22:12432411-12431960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):363, 371

               
               
               Conread position:73-530
               
               
               Cow position:chr22:11701186-11701645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:288
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):41, 46

               
               
               Conread position:73-531
               
               
               Cow position:chr22:11640943-11641403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):400, 383

               
               
               Conread position:73-538
               
               
               Cow position:chr22:12432327-12431860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:297
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):127, 132

               
               
               Conread position:73-581
               
               
               Cow position:chr22:12475800-12475290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):365, 376

               
               
               Conread position:73-582
               
               
               Cow position:chr22:12399423-12398912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):289, 285

               
               
               Conread position:74-546
               
               
               Cow position:chr22:12385412-12384938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 284

               
               
               Conread position:74-579
               
               
               Cow position:chr22:12399919-12399419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:328
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):195, 8

               
               
               Conread position:74-581
               
               
               Cow position:chr22:12499460-12499969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):364, 376

               
               
               Conread position:75-580
               
               
               Cow position:chr22:46654017-46654523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:326
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):114, 6

               
               
               Conread position:76-544
               
               
               Cow position:chr22:14429650-14430120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:293
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):117, 127

               
               
               Conread position:76-579
               
               
               Cow position:chr22:12399756-12399251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):279, 297

               
               
               Conread position:76-581
               
               
               Cow position:chr22:12499294-12499801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 130

               
               
               Conread position:79-365
               
               
               Cow position:chr22:11666622-11666908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):58, 45

               
               
               Conread position:79-450
               
               
               Cow position:chr22:11701276-11701648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):58, 45

               
               
               Conread position:79-579
               
               
               Cow position:chr22:12399837-12399335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 125

               
               
               Conread position:81-522
               
               
               Cow position:chr22:12498879-12499322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):281, 271

               
               
               Conread position:82-522
               
               
               Cow position:chr22:12476379-12475937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 20

               
               
               Conread position:82-581
               
               
               Cow position:chr22:11701111-11701612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:310
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):217, 210

               
               
               Conread position:82-583
               
               
               Cow position:chr22:11640616-11641120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:323
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):48, 55

               
               
               Conread position:88-522
               
               
               Cow position:chr22:12458592-12458156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):348, 361

               
               
               Conread position:99-579
               
               
               Cow position:chr22:46653956-46654438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:302
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):339, 330

               
               
               Conread position:106-537
               
               
               Cow position:chr22:12385718-12385283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:279
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):54, 48

               
               
               Conread position:131-374
               
               
               Cow position:chr22:12419321-12419078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:134-532
               
               
               Cow position:chr22:14467953-14468353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:250
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):68, 85

               
               
               Conread position:135-519
               
               
               Cow position:chr22:12498849-12499235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:252
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):351, 0

               
               
               Conread position:135-530
               
               
               Cow position:chr22:12476410-12476013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:252
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):351, 0

               
               
               Conread position:135-581
               
               
               Cow position:chr22:12399445-12398997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 87

               
               
               Conread position:141-531
               
               
               Cow position:chr22:12458623-12458231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):298, 308

               
               
               Conread position:190-557
               
               
               Cow position:chr22:12385718-12385347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:238
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):54, 48

               
               
               Conread position:3-313
               
               
               Cow position:chr23:24654127-24654441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):18, 279

               
               
               Conread position:15-320
               
               
               Cow position:chr23:25660427-25660735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:15-349
               
               
               Cow position:chr23:24639744-24640081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:228
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:15-532
               
               
               Cow position:chr23:25660175-25660697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 371

               
               
               Conread position:15-579
               
               
               Cow position:chr23:24560698-24560129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 454

               
               
               Conread position:18-412
               
               
               Cow position:chr23:24535850-24535453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 289

               
               
               Conread position:18-563
               
               
               Cow position:chr23:24639243-24639792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 68

               
               
               Conread position:18-578
               
               
               Cow position:chr23:24560863-24560298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 343

               
               
               Conread position:18-581
               
               
               Cow position:chr23:24522790-24522225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:351
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):43, 183

               
               
               Conread position:19-366
               
               
               Cow position:chr23:24535765-24535414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):33, 204

               
               
               Conread position:39-318
               
               
               Cow position:chr23:25723992-25723713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:40-341
               
               
               Cow position:chr23:24546942-24546641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:42-402
               
               
               Cow position:chr23:24547024-24546664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 32

               
               
               Conread position:46-418
               
               
               Cow position:chr23:25626590-25626960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:244
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:47-252
               
               
               Cow position:chr23:24626535-24626738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):21, 27

               
               
               Conread position:47-580
               
               
               Cow position:chr23:25698597-25698063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 155

               
               
               Conread position:49-486
               
               
               Cow position:chr23:24547101-24546664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):313, 303

               
               
               Conread position:51-403
               
               
               Cow position:chr23:24626371-24626723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):310, 302

               
               
               Conread position:52-246
               
               
               Cow position:chr23:24560322-24560128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:52-291
               
               
               Cow position:chr23:24639868-24640107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:52-309
               
               
               Cow position:chr23:24522420-24522163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:52-356
               
               
               Cow position:chr23:25626763-25627069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):275, 0

               
               
               Conread position:52-431
               
               
               Cow position:chr23:24639700-24640079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):310, 301

               
               
               Conread position:52-537
               
               
               Cow position:chr23:25626178-25626662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:308
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):351, 356

               
               
               Conread position:52-579
               
               
               Cow position:chr23:24547266-24546737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):435, 514

               
               
               Conread position:52-579
               
               
               Cow position:chr23:24560742-24560213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 21

               
               
               Conread position:52-581
               
               
               Cow position:chr23:24639532-24640063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 71

               
               
               Conread position:52-589
               
               
               Cow position:chr23:25626010-25626548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):247, 252

               
               
               Conread position:62-581
               
               
               Cow position:chr23:24536053-24535534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 5

               
               
               Conread position:69-581
               
               
               Cow position:chr23:24547333-24546819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):293, 289

               
               
               Conread position:72-281
               
               
               Cow position:chr23:24546826-24546617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):180, 171

               
               
               Conread position:72-373
               
               
               Cow position:chr23:24522484-24522182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):283, 288

               
               
               Conread position:72-420
               
               
               Cow position:chr23:24654034-24654381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:72-463
               
               
               Cow position:chr23:25626699-25627091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:250
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):344, 0

               
               
               Conread position:72-464
               
               
               Cow position:chr23:24522568-24522175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):138, 155

               
               
               Conread position:72-540
               
               
               Cow position:chr23:24560890-24560420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 159

               
               
               Conread position:72-579
               
               
               Cow position:chr23:25698656-25698148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:319
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):40, 45

               
               
               Conread position:72-581
               
               
               Cow position:chr23:24639468-24639979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):317, 304

               
               
               Conread position:73-247
               
               
               Cow position:chr23:25660572-25660746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):129, 136

               
               
               Conread position:73-402
               
               
               Cow position:chr23:25724042-25723713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:219
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:73-580
               
               
               Cow position:chr23:24547161-24546652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):400, 387

               
               
               Conread position:74-485
               
               
               Cow position:chr23:24535874-24535464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):371, 8

               
               
               Conread position:75-546
               
               
               Cow position:chr23:24639387-24639860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):287, 283

               
               
               Conread position:75-563
               
               
               Cow position:chr23:25626453-25626939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 72

               
               
               Conread position:76-556
               
               
               Cow position:chr23:24522645-24522166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:304
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):286, 40

               
               
               Conread position:79-347
               
               
               Cow position:chr23:24626483-24626749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):221, 225

               
               
               Conread position:79-379
               
               
               Cow position:chr23:24521971-24521671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):190, 243

               
               
               Conread position:81-581
               
               
               Cow position:chr23:24639225-24639727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 164

               
               
               Conread position:83-513
               
               
               Cow position:chr23:24626319-24626749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):362, 356

               
               
               Conread position:84-581
               
               
               Cow position:chr23:25625958-25626457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:305
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):355, 365

               
               
               Conread position:85-533
               
               
               Cow position:chr23:25660164-25660614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):304, 298

               
               
               Conread position:92-519
               
               
               Cow position:chr23:25724107-25723681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):330, 346

               
               
               Conread position:113-579
               
               
               Cow position:chr23:25698699-25698231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:294
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):80, 90

               
               
               Conread position:126-540
               
               
               Cow position:chr23:24626278-24626694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 14

               
               
               Conread position:133-581
               
               
               Cow position:chr23:24560913-24560463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:287
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):355, 433

               
               
               Conread position:147-563
               
               
               Cow position:chr23:24536054-24535637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):65, 78

               
               
               Conread position:150-532
               
               
               Cow position:chr23:25660145-25660529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 208

               
               
               Conread position:166-501
               
               
               Cow position:chr23:24654043-24654380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:224
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):317, 0

               
               
               Conread position:167-531
               
               
               Cow position:chr23:25724116-25723750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):319, 0

               
               
               Conread position:236-581
               
               
               Cow position:chr23:25724131-25723784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):248, 312

               
               
               Conread position:236-586
               
               
               Cow position:chr23:24547334-24546981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 208

               
               
               Conread position:317-579
               
               
               Cow position:chr23:24654024-24654290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):12, 251

               
               
               Conread position:338-579
               
               
               Cow position:chr23:25660165-25660408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:3-486
               
               
               Cow position:chr24:17077998-17077512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 383

               
               
               Conread position:15-415
               
               
               Cow position:chr24:17077902-17077499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 377

               
               
               Conread position:18-546
               
               
               Cow position:chr24:17036601-17036071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 52

               
               
               Conread position:21-579
               
               
               Cow position:chr24:17036013-17035450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 186

               
               
               Conread position:22-507
               
               
               Cow position:chr24:17035508-17035018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 83

               
               
               Conread position:22-579
               
               
               Cow position:chr24:17035760-17035198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 338

               
               
               Conread position:40-548
               
               
               Cow position:chr24:17078042-17077532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):433, 426

               
               
               Conread position:49-580
               
               
               Cow position:chr24:17078117-17077584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):313, 304

               
               
               Conread position:49-581
               
               
               Cow position:chr24:17036318-17035784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 128

               
               
               Conread position:50-579
               
               
               Cow position:chr24:17035897-17035366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):337, 333

               
               
               Conread position:50-579
               
               
               Cow position:chr24:17036485-17035954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):433, 0

               
               
               Conread position:51-267
               
               
               Cow position:chr24:17013310-17013525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):193, 0

               
               
               Conread position:51-409
               
               
               Cow position:chr24:17070689-17071047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:235
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):338, 333

               
               
               Conread position:52-342
               
               
               Cow position:chr24:17013227-17013516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):279, 0

               
               
               Conread position:52-563
               
               
               Cow position:chr24:17070522-17071034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):421, 414

               
               
               Conread position:52-579
               
               
               Cow position:chr24:17078282-17077753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):310, 306

               
               
               Conread position:55-581
               
               
               Cow position:chr24:17078363-17077835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:530
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):428, 511

               
               
               Conread position:72-461
               
               
               Cow position:chr24:17035371-17034982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:72-517
               
               
               Cow position:chr24:17036043-17035596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 212

               
               
               Conread position:72-567
               
               
               Cow position:chr24:17035539-17035042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):316, 311

               
               
               Conread position:73-506
               
               
               Cow position:chr24:17070627-17071062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):400, 393

               
               
               Conread position:73-579
               
               
               Cow position:chr24:17036126-17035618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):410, 493

               
               
               Conread position:74-303
               
               
               Cow position:chr24:16986431-16986660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:83-415
               
               
               Cow position:chr24:17013174-17013506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:94-581
               
               
               Cow position:chr24:17070480-17070969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 35

               
               
               Conread position:97-551
               
               
               Cow position:chr24:17078153-17077697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):385, 0

               
               
               Conread position:141-497
               
               
               Cow position:chr24:17013148-17013506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):341, 0

               
               
               Conread position:223-581
               
               
               Cow position:chr24:17070358-17070717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):213, 5

               
               
               Conread position:225-540
               
               
               Cow position:chr24:17013148-17013465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):137, 133

               
               
               Conread position:239-458
               
               
               Cow position:chr24:16986428-16986647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):197, 210

               
               
               Conread position:1-245
               
               
               Cow position:chr25:36801720-36801967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:1-247
               
               
               Cow position:chr25:327016-327265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):51, 204

               
               
               Conread position:1-335
               
               
               Cow position:chr25:34732095-34731757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):58, 208

               
               
               Conread position:1-493
               
               
               Cow position:chr25:34714043-34714537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:303
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):60, 207

               
               
               Conread position:1-581
               
               
               Cow position:chr25:33298824-33299409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:1-586
               
               
               Cow position:chr25:33157380-33156790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 229

               
               
               Conread position:6-485
               
               
               Cow position:chr25:326343-326825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:8-317
               
               
               Cow position:chr25:366739-367053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):13, 178

               
               
               Conread position:9-444
               
               
               Cow position:chr25:34763347-34763781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:274
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):43, 109

               
               
               Conread position:10-586
               
               
               Cow position:chr25:22235766-22236344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):247, 243

               
               
               Conread position:11-584
               
               
               Cow position:chr25:34447039-34447620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 352

               
               
               Conread position:15-375
               
               
               Cow position:chr25:414673-414313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):28, 19

               
               
               Conread position:15-414
               
               
               Cow position:chr25:33145037-33145439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:259
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:15-557
               
               
               Cow position:chr25:36800906-36801441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 273

               
               
               Conread position:15-567
               
               
               Cow position:chr25:33144872-33145426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:340
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):36, 140

               
               
               Conread position:15-581
               
               
               Cow position:chr25:33298670-33299241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 204

               
               
               Conread position:16-576
               
               
               Cow position:chr25:34446878-34447443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 20

               
               
               Conread position:18-329
               
               
               Cow position:chr25:326949-327263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:18-363
               
               
               Cow position:chr25:33299513-33299856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):23, 277

               
               
               Conread position:18-586
               
               
               Cow position:chr25:34446964-34447538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 52

               
               
               Conread position:19-486
               
               
               Cow position:chr25:3664042-3664512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:289
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):33, 112

               
               
               Conread position:19-567
               
               
               Cow position:chr25:25652803-25653356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 15

               
               
               Conread position:20-567
               
               
               Cow position:chr25:33157445-33156893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 287

               
               
               Conread position:22-581
               
               
               Cow position:chr25:33298508-33299073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 113

               
               
               Conread position:39-364
               
               
               Cow position:chr25:346498-346823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):136, 142

               
               
               Conread position:40-529
               
               
               Cow position:chr25:33299202-33299693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):447, 0

               
               
               Conread position:40-581
               
               
               Cow position:chr25:33157509-33156963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 423

               
               
               Conread position:41-414
               
               
               Cow position:chr25:36801595-36801966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):335, 348

               
               
               Conread position:41-581
               
               
               Cow position:chr25:36800767-36801309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):417, 411

               
               
               Conread position:41-581
               
               
               Cow position:chr25:36801103-36801633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:339
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):82, 77

               
               
               Conread position:41-586
               
               
               Cow position:chr25:33299035-33299583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):446, 524

               
               
               Conread position:42-417
               
               
               Cow position:chr25:33127855-33128230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:42-558
               
               
               Cow position:chr25:25652661-25653179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:317
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):430, 418

               
               
               Conread position:42-566
               
               
               Cow position:chr25:34762882-34763404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 235

               
               
               Conread position:42-567
               
               
               Cow position:chr25:25652493-25653020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:327
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):347, 334

               
               
               Conread position:42-579
               
               
               Cow position:chr25:34769819-34769280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 180

               
               
               Conread position:42-583
               
               
               Cow position:chr25:34763131-34763672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):438, 343

               
               
               Conread position:43-446
               
               
               Cow position:chr25:34732639-34732234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):13, 6

               
               
               Conread position:45-545
               
               
               Cow position:chr25:34447246-34447746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:305
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):22, 29

               
               
               Conread position:46-297
               
               
               Cow position:chr25:427302-427553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):147, 173

               
               
               Conread position:46-389
               
               
               Cow position:chr25:23420525-23420867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:231
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):166, 5

               
               
               Conread position:46-531
               
               
               Cow position:chr25:23420119-23420591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:304
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):18, 39

               
               
               Conread position:48-563
               
               
               Cow position:chr25:33299294-33299810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):441, 513

               
               
               Conread position:49-487
               
               
               Cow position:chr25:33299463-33299894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):327, 340

               
               
               Conread position:49-529
               
               
               Cow position:chr25:36800691-36801173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:300
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):172, 167

               
               
               Conread position:50-586
               
               
               Cow position:chr25:33299128-33299667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 137

               
               
               Conread position:51-318
               
               
               Cow position:chr25:346594-346861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):40, 46

               
               
               Conread position:51-583
               
               
               Cow position:chr25:34769978-34769443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):434, 515

               
               
               Conread position:52-529
               
               
               Cow position:chr25:33298794-33299273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 168

               
               
               Conread position:52-567
               
               
               Cow position:chr25:34763225-34763739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 229

               
               
               Conread position:52-569
               
               
               Cow position:chr25:34769725-34769206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):386, 397

               
               
               Conread position:52-583
               
               
               Cow position:chr25:33306156-33305624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:327
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):61, 71

               
               
               Conread position:54-366
               
               
               Cow position:chr25:33306397-33306094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):20, 13

               
               
               Conread position:55-546
               
               
               Cow position:chr25:23420365-23420858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 11

               
               
               Conread position:55-581
               
               
               Cow position:chr25:36801357-36801885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:530
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):391, 387

               
               
               Conread position:56-486
               
               
               Cow position:chr25:346431-346861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 146

               
               
               Conread position:63-582
               
               
               Cow position:chr25:33298469-33298990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 39

               
               
               Conread position:64-523
               
               
               Cow position:chr25:33299394-33299851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:290
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):446, 436

               
               
               Conread position:64-578
               
               
               Cow position:chr25:33306223-33305713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:326
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):150, 35

               
               
               Conread position:67-581
               
               
               Cow position:chr25:34762823-34763336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):413, 319

               
               
               Conread position:68-549
               
               
               Cow position:chr25:414779-414305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):351, 29

               
               
               Conread position:69-579
               
               
               Cow position:chr25:36801215-36801715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:313
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):403, 121

               
               
               Conread position:69-581
               
               
               Cow position:chr25:34770128-34769614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 54

               
               
               Conread position:69-583
               
               
               Cow position:chr25:34770044-34769527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):293, 289

               
               
               Conread position:72-395
               
               
               Cow position:chr25:366724-367047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:217
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):187, 193

               
               
               Conread position:72-412
               
               
               Cow position:chr25:34732105-34731764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):226, 232

               
               
               Conread position:72-485
               
               
               Cow position:chr25:23420466-23420879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:267
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):145, 128

               
               
               Conread position:72-493
               
               
               Cow position:chr25:36801542-36801963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:72-494
               
               
               Cow position:chr25:33127801-33128223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):290, 280

               
               
               Conread position:72-523
               
               
               Cow position:chr25:18642172-18641707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:298
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):103, 217

               
               
               Conread position:72-529
               
               
               Cow position:chr25:33306049-33305596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:283
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):5, 52

               
               
               Conread position:72-575
               
               
               Cow position:chr25:34433523-34434022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:310
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):317, 82

               
               
               Conread position:72-579
               
               
               Cow position:chr25:34447357-34447857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 31

               
               
               Conread position:73-357
               
               
               Cow position:chr25:33305718-33305433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):70, 77

               
               
               Conread position:73-466
               
               
               Cow position:chr25:3664183-3664576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:238
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:73-530
               
               
               Cow position:chr25:25652440-25652899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:278
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):400, 387

               
               
               Conread position:73-549
               
               
               Cow position:chr25:33305319-33304846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:299
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):275, 203

               
               
               Conread position:74-257
               
               
               Cow position:chr25:438398-438215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:74-532
               
               
               Cow position:chr25:34714035-34714495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):409, 0

               
               
               Conread position:75-273
               
               
               Cow position:chr25:34433023-34433220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:76-524
               
               
               Cow position:chr25:33305877-33305432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:274
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):379, 48

               
               
               Conread position:76-581
               
               
               Cow position:chr25:36800634-36801141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:315
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):409, 485

               
               
               Conread position:82-531
               
               
               Cow position:chr25:3663940-3664391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:274
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):186, 194

               
               
               Conread position:82-581
               
               
               Cow position:chr25:33144858-33145356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:314
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):404, 176

               
               
               Conread position:82-583
               
               
               Cow position:chr25:36800556-36801059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:311
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):78, 71

               
               
               Conread position:87-576
               
               
               Cow position:chr25:33127732-33128223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):396, 424

               
               
               Conread position:93-415
               
               
               Cow position:chr25:326942-327265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):6, 107

               
               
               Conread position:93-534
               
               
               Cow position:chr25:34473527-34473967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:273
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):100, 111

               
               
               Conread position:93-579
               
               
               Cow position:chr25:23420319-23420807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:310
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):207, 211

               
               
               Conread position:97-451
               
               
               Cow position:chr25:33145038-33145392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:97-522
               
               
               Cow position:chr25:326353-326780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 126

               
               
               Conread position:100-581
               
               
               Cow position:chr25:33127661-33128144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 51

               
               
               Conread position:106-581
               
               
               Cow position:chr25:33157524-33157047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):374, 459

               
               
               Conread position:122-581
               
               
               Cow position:chr25:36801340-36801801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:294
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):93, 113

               
               
               Conread position:130-579
               
               
               Cow position:chr25:34770151-34769700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 228

               
               
               Conread position:136-581
               
               
               Cow position:chr25:33305421-33304980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:278
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):348, 17

               
               
               Conread position:147-579
               
               
               Cow position:chr25:33157567-33157133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 53

               
               
               Conread position:150-519
               
               
               Cow position:chr25:34732615-34732244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:236
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):150, 155

               
               
               Conread position:151-425
               
               
               Cow position:chr25:36844626-36844352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:156-485
               
               
               Cow position:chr25:366724-367053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:156-491
               
               
               Cow position:chr25:34732105-34731770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):133, 146

               
               
               Conread position:157-346
               
               
               Cow position:chr25:34433020-34433209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:158-362
               
               
               Cow position:chr25:427330-427534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):39, 44

               
               
               Conread position:158-497
               
               
               Cow position:chr25:326924-327265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):25, 18

               
               
               Conread position:166-341
               
               
               Cow position:chr25:438390-438215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:167-508
               
               
               Cow position:chr25:34733999-34733656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):222, 212

               
               
               Conread position:194-581
               
               
               Cow position:chr25:34770171-34769782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:255
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):195, 190

               
               
               Conread position:210-581
               
               
               Cow position:chr25:36800516-36800889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):277, 343

               
               
               Conread position:232-523
               
               
               Cow position:chr25:33506823-33507116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):157, 144

               
               
               Conread position:236-536
               
               
               Cow position:chr25:346443-346745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):191, 208

               
               
               Conread position:241-417
               
               
               Cow position:chr25:34433020-34433196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:241-581
               
               
               Cow position:chr25:25652188-25652530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):148, 138

               
               
               Conread position:262-577
               
               
               Cow position:chr25:4657444-4657125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):195, 282

               
               
               Conread position:296-579
               
               
               Cow position:chr25:34433495-34433777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):164, 110

               
               
               Conread position:1-501
               
               
               Cow position:chr27:21615930-21615426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:304
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):50, 109

               
               
               Conread position:52-362
               
               
               Cow position:chr27:21615708-21615399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):25, 16

               
               
               Conread position:73-581
               
               
               Cow position:chr27:21615939-21615430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:312
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):137, 147

               
               
               Conread position:82-540
               
               
               Cow position:chr27:21616013-21615555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:284
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):197, 67

               
               
               Conread position:1-362
               
               
               Cow position:chr28:9299314-9299675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):49, 264

               
               
               Conread position:1-499
               
               
               Cow position:chr28:34696089-34696590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 219

               
               
               Conread position:1-502
               
               
               Cow position:chr28:11334044-11333538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 85

               
               
               Conread position:1-536
               
               
               Cow position:chr28:7810357-7810888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:337
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):37, 27

               
               
               Conread position:3-430
               
               
               Cow position:chr28:11333790-11333366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):30, 19

               
               
               Conread position:15-521
               
               
               Cow position:chr28:11333862-11333357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:324
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):37, 90

               
               
               Conread position:15-579
               
               
               Cow position:chr28:7757523-7758092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 27

               
               
               Conread position:18-486
               
               
               Cow position:chr28:9253129-9253600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 454

               
               
               Conread position:18-581
               
               
               Cow position:chr28:7757694-7758262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 201

               
               
               Conread position:18-583
               
               
               Cow position:chr28:9298593-9299159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 74

               
               
               Conread position:40-546
               
               
               Cow position:chr28:7810315-7810814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 43

               
               
               Conread position:45-581
               
               
               Cow position:chr28:34695968-34696506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 172

               
               
               Conread position:46-557
               
               
               Cow position:chr28:34696053-34696566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 88

               
               
               Conread position:46-589
               
               
               Cow position:chr28:9253077-9253621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):438, 5

               
               
               Conread position:47-598
               
               
               Cow position:chr28:34695886-34696437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):416, 520

               
               
               Conread position:48-403
               
               
               Cow position:chr28:7757979-7758334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:239
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):20, 32

               
               
               Conread position:49-417
               
               
               Cow position:chr28:9290312-9290678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):238, 63

               
               
               Conread position:50-448
               
               
               Cow position:chr28:7758469-7758867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:252
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):219, 227

               
               
               Conread position:50-581
               
               
               Cow position:chr28:9290149-9290676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 58

               
               
               Conread position:52-418
               
               
               Cow position:chr28:33210291-33210658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):270, 334

               
               
               Conread position:52-426
               
               
               Cow position:chr28:7810570-7810944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:244
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:52-454
               
               
               Cow position:chr28:7757899-7758301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:264
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):140, 152

               
               
               Conread position:52-517
               
               
               Cow position:chr28:7758387-7758854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:293
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):410, 383

               
               
               Conread position:52-532
               
               
               Cow position:chr28:9252913-9253396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 29

               
               
               Conread position:55-344
               
               
               Cow position:chr28:9290401-9290689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:55-552
               
               
               Cow position:chr28:7757398-7757898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 118

               
               
               Conread position:56-518
               
               
               Cow position:chr28:11334154-11333690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:288
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):137, 168

               
               
               Conread position:60-562
               
               
               Cow position:chr28:9253006-9253509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):424, 501

               
               
               Conread position:69-345
               
               
               Cow position:chr28:7810671-7810947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):133, 138

               
               
               Conread position:72-502
               
               
               Cow position:chr28:7758323-7758755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:246
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):138, 150

               
               
               Conread position:72-571
               
               
               Cow position:chr28:7757501-7758000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):391, 9

               
               
               Conread position:73-313
               
               
               Cow position:chr28:34673691-34673931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:73-458
               
               
               Cow position:chr28:33210228-33210614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):333, 0

               
               
               Conread position:75-415
               
               
               Cow position:chr28:9299224-9299563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:76-537
               
               
               Cow position:chr28:34673442-34673905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:296
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):38, 50

               
               
               Conread position:76-581
               
               
               Cow position:chr28:9290091-9290592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 116

               
               
               Conread position:82-508
               
               
               Cow position:chr28:34673364-34673792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):384, 0

               
               
               Conread position:84-523
               
               
               Cow position:chr28:34679549-34679116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:275
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):53, 41

               
               
               Conread position:85-558
               
               
               Cow position:chr28:34695840-34696315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):393, 0

               
               
               Conread position:86-533
               
               
               Cow position:chr28:7757345-7757794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:294
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):34, 49

               
               
               Conread position:92-581
               
               
               Cow position:chr28:7810283-7810765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 245

               
               
               Conread position:126-508
               
               
               Cow position:chr28:7810560-7810944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:248
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):242, 248

               
               
               Conread position:141-522
               
               
               Cow position:chr28:9289985-9290367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:242
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):56, 218

               
               
               Conread position:141-563
               
               
               Cow position:chr28:11334153-11333730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:262
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):164, 158

               
               
               Conread position:141-581
               
               
               Cow position:chr28:34695728-34696170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:272
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):71, 76

               
               
               Conread position:141-581
               
               
               Cow position:chr28:34695812-34696254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:282
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):116, 112

               
               
               Conread position:153-497
               
               
               Cow position:chr28:9299217-9299563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):317, 303

               
               
               Conread position:153-581
               
               
               Cow position:chr28:33210223-33210655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 314

               
               
               Conread position:166-578
               
               
               Cow position:chr28:11334212-11333796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:263
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):104, 111

               
               
               Conread position:239-508
               
               
               Cow position:chr28:34673353-34673624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):66, 58

               
               
               Conread position:1-455
               
               
               Cow position:chr29:39627331-39626877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:279
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):64, 59

               
               
               Conread position:52-406
               
               
               Cow position:chr29:39627196-39626842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 21

               
               
               Conread position:66-583
               
               
               Cow position:chr29:39627514-39626998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:318
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):127, 13

               
               
               Conread position:76-563
               
               
               Cow position:chr29:39627421-39626936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:303
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):136, 146

               
               
               Conread position:3-492
               
               
               Cow position:chr3:68045862-68046356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:303
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):21, 218

               
               
               Conread position:15-330
               
               
               Cow position:chr3:62743115-62743433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 71

               
               
               Conread position:18-581
               
               
               Cow position:chr3:62722215-62721647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 207

               
               
               Conread position:22-546
               
               
               Cow position:chr3:62722128-62721598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 257

               
               
               Conread position:35-318
               
               
               Cow position:chr3:68027475-68027757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:51-498
               
               
               Cow position:chr3:68027322-68027769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):165, 169

               
               
               Conread position:51-584
               
               
               Cow position:chr3:68045831-68046365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:329
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):61, 51

               
               
               Conread position:52-320
               
               
               Cow position:chr3:62721842-62721574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:52-498
               
               
               Cow position:chr3:62742593-62743032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):294, 48

               
               
               Conread position:52-538
               
               
               Cow position:chr3:62742425-62742909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:300
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):150, 156

               
               
               Conread position:52-579
               
               
               Cow position:chr3:68045748-68046277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:327
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):73, 85

               
               
               Conread position:64-551
               
               
               Cow position:chr3:62742270-62742757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:306
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):236, 84

               
               
               Conread position:67-356
               
               
               Cow position:chr3:68027003-68027291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):7, 15

               
               
               Conread position:72-395
               
               
               Cow position:chr3:77350913-77350593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):59, 43

               
               
               Conread position:72-411
               
               
               Cow position:chr3:62721906-62721567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):40, 35

               
               
               Conread position:72-522
               
               
               Cow position:chr3:68027091-68027543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:280
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):140, 148

               
               
               Conread position:72-579
               
               
               Cow position:chr3:77351240-77350740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:308
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):317, 59

               
               
               Conread position:72-581
               
               
               Cow position:chr3:62722242-62721731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 232

               
               
               Conread position:72-582
               
               
               Cow position:chr3:62742361-62742868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:313
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):144, 155

               
               
               Conread position:73-447
               
               
               Cow position:chr3:20194890-20195264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:73-531
               
               
               Cow position:chr3:68027260-68027720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:285
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):37, 29

               
               
               Conread position:73-531
               
               
               Cow position:chr3:68045685-68046145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:292
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):139, 147

               
               
               Conread position:74-568
               
               
               Cow position:chr3:68045603-68046098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 8

               
               
               Conread position:76-579
               
               
               Cow position:chr3:62722322-62721817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 47

               
               
               Conread position:93-454
               
               
               Cow position:chr3:62743033-62743389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):353, 85

               
               
               Conread position:100-579
               
               
               Cow position:chr3:62722381-62721901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:299
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):64, 8

               
               
               Conread position:142-497
               
               
               Cow position:chr3:77350927-77350575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):211, 0

               
               
               Conread position:204-522
               
               
               Cow position:chr3:68027057-68027375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):53, 20

               
               
               Conread position:204-532
               
               
               Cow position:chr3:62742241-62742571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):10, 114

               
               
               Conread position:49-522
               
               
               Cow position:chr4:42315060-42314587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:288
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):164, 150

               
               
               Conread position:72-363
               
               
               Cow position:chr4:42314785-42314495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):42, 65

               
               
               Conread position:72-579
               
               
               Cow position:chr4:42314619-42314109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:310
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):40, 206

               
               
               Conread position:76-530
               
               
               Cow position:chr4:42315201-42314745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:279
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):215, 207

               
               
               Conread position:220-440
               
               
               Cow position:chr5:34281404-34281624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):65, 208

               
               
               Conread position:304-522
               
               
               Cow position:chr5:34281404-34281624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):65, 192

               
               
               Conread position:1-529
               
               
               Cow position:chr6:49362108-49362629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:327
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):43, 53

               
               
               Conread position:18-412
               
               
               Cow position:chr6:49362449-49362834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:243
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):31, 162

               
               
               Conread position:43-412
               
               
               Cow position:chr6:49429119-49429491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:48-581
               
               
               Cow position:chr6:49396022-49396551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 128

               
               
               Conread position:49-426
               
               
               Cow position:chr6:49341052-49341429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 173

               
               
               Conread position:50-542
               
               
               Cow position:chr6:49340633-49341127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 81

               
               
               Conread position:52-523
               
               
               Cow position:chr6:49396524-49396997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 21

               
               
               Conread position:52-531
               
               
               Cow position:chr6:49340971-49341451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):248, 252

               
               
               Conread position:52-532
               
               
               Cow position:chr6:49396272-49396754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 165

               
               
               Conread position:52-541
               
               
               Cow position:chr6:49340467-49340958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):407, 416

               
               
               Conread position:52-541
               
               
               Cow position:chr6:49340887-49341378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):244, 237

               
               
               Conread position:52-579
               
               
               Cow position:chr6:49340551-49341080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 163

               
               
               Conread position:52-579
               
               
               Cow position:chr6:49340719-49341248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 167

               
               
               Conread position:52-579
               
               
               Cow position:chr6:49396356-49396885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 165

               
               
               Conread position:55-540
               
               
               Cow position:chr6:49396113-49396594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 19

               
               
               Conread position:64-579
               
               
               Cow position:chr6:49395872-49396381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:321
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):418, 14

               
               
               Conread position:72-579
               
               
               Cow position:chr6:49340403-49340912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 181

               
               
               Conread position:73-532
               
               
               Cow position:chr6:49362339-49362788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:287
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):324, 292

               
               
               Conread position:73-562
               
               
               Cow position:chr6:49428900-49429390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:300
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):405, 471

               
               
               Conread position:97-540
               
               
               Cow position:chr6:49396233-49396678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 36

               
               
               Conread position:117-581
               
               
               Cow position:chr6:49340364-49340830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:297
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):224, 220

               
               
               Conread position:146-546
               
               
               Cow position:chr6:49362328-49362718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:246
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):303, 0

               
               
               Conread position:255-581
               
               
               Cow position:chr6:49428242-49428570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:209
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):178, 172

               
               
               Conread position:3-522
               
               
               Cow position:chr7:1439734-1440257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:329
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):18, 125

               
               
               Conread position:15-500
               
               
               Cow position:chr7:1014962-1015452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 368

               
               
               Conread position:15-532
               
               
               Cow position:chr7:28846446-28846968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:317
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):32, 19

               
               
               Conread position:15-579
               
               
               Cow position:chr7:1014710-1015279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 206

               
               
               Conread position:18-362
               
               
               Cow position:chr7:1439917-1440263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):33, 52

               
               
               Conread position:18-522
               
               
               Cow position:chr7:42878830-42878321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 192

               
               
               Conread position:18-579
               
               
               Cow position:chr7:42879166-42878600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 429

               
               
               Conread position:40-582
               
               
               Cow position:chr7:3180252-3180796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 162

               
               
               Conread position:41-587
               
               
               Cow position:chr7:42878972-42878423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):255, 242

               
               
               Conread position:46-546
               
               
               Cow position:chr7:11601129-11600628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):440, 5

               
               
               Conread position:46-579
               
               
               Cow position:chr7:3179839-3180373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):437, 5

               
               
               Conread position:47-362
               
               
               Cow position:chr7:18390472-18390786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):311, 0

               
               
               Conread position:47-518
               
               
               Cow position:chr7:8277400-8277875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:288
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):17, 246

               
               
               Conread position:48-581
               
               
               Cow position:chr7:18390137-18390672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 73

               
               
               Conread position:49-401
               
               
               Cow position:chr7:42878628-42878276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):313, 309

               
               
               Conread position:49-431
               
               
               Cow position:chr7:1438309-1438691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):27, 34

               
               
               Conread position:49-523
               
               
               Cow position:chr7:42878880-42878404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 158

               
               
               Conread position:51-557
               
               
               Cow position:chr7:18390224-18390732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):434, 0

               
               
               Conread position:51-579
               
               
               Cow position:chr7:3180095-3180625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 134

               
               
               Conread position:52-403
               
               
               Cow position:chr7:18390393-18390744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:229
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:52-481
               
               
               Cow position:chr7:42878709-42878280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:52-522
               
               
               Cow position:chr7:8325216-8325688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:307
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):70, 78

               
               
               Conread position:52-532
               
               
               Cow position:chr7:8325132-8325614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:304
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):145, 168

               
               
               Conread position:52-581
               
               
               Cow position:chr7:1014336-1014861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:324
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):157, 166

               
               
               Conread position:52-581
               
               
               Cow position:chr7:18389973-18390504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:323
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):154, 163

               
               
               Conread position:52-583
               
               
               Cow position:chr7:3180012-3180546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 151

               
               
               Conread position:52-586
               
               
               Cow position:chr7:3179760-3180297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):328, 314

               
               
               Conread position:57-502
               
               
               Cow position:chr7:18390314-18390761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):431, 0

               
               
               Conread position:64-407
               
               
               Cow position:chr7:11600776-11600432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):339, 0

               
               
               Conread position:64-532
               
               
               Cow position:chr7:42879283-42878815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 15

               
               
               Conread position:64-579
               
               
               Cow position:chr7:11601196-11600679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:319
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):396, 502

               
               
               Conread position:69-366
               
               
               Cow position:chr7:8325821-8326118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):66, 50

               
               
               Conread position:69-532
               
               
               Cow position:chr7:8242879-8243344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:285
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):52, 38

               
               
               Conread position:69-581
               
               
               Cow position:chr7:1014269-1014777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:311
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):93, 104

               
               
               Conread position:70-532
               
               
               Cow position:chr7:8243635-8244096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:281
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):52, 66

               
               
               Conread position:71-522
               
               
               Cow position:chr7:8324815-8325268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:286
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):139, 146

               
               
               Conread position:72-508
               
               
               Cow position:chr7:8277931-8278369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:272
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):55, 45

               
               
               Conread position:72-529
               
               
               Cow position:chr7:3180368-3180825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 146

               
               
               Conread position:72-530
               
               
               Cow position:chr7:11600936-11600476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:289
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):365, 377

               
               
               Conread position:72-532
               
               
               Cow position:chr7:8277259-8277721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:293
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):77, 41

               
               
               Conread position:72-532
               
               
               Cow position:chr7:8325068-8325530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:289
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):50, 64

               
               
               Conread position:72-555
               
               
               Cow position:chr7:1014938-1015423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 57

               
               
               Conread position:72-581
               
               
               Cow position:chr7:11601271-11600761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:312
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):144, 46

               
               
               Conread position:72-585
               
               
               Cow position:chr7:8325572-8326087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:321
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):134, 116

               
               
               Conread position:73-473
               
               
               Cow position:chr7:11600851-11600449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:267
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):147, 143

               
               
               Conread position:73-530
               
               
               Cow position:chr7:8325489-8325948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:283
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):289, 285

               
               
               Conread position:73-530
               
               
               Cow position:chr7:8325657-8326116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:302
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):50, 34

               
               
               Conread position:74-586
               
               
               Cow position:chr7:42879191-42878676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):409, 454

               
               
               Conread position:75-533
               
               
               Cow position:chr7:8242970-8243428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:277
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):69, 7

               
               
               Conread position:76-522
               
               
               Cow position:chr7:8277599-8278047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:277
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):39, 51

               
               
               Conread position:79-522
               
               
               Cow position:chr7:8277854-8278299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:281
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):138, 124

               
               
               Conread position:82-522
               
               
               Cow position:chr7:1439479-1439922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:281
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):206, 107

               
               
               Conread position:82-583
               
               
               Cow position:chr7:3179706-3180210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 138

               
               
               Conread position:88-581
               
               
               Cow position:chr7:28846438-28846933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:297
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):375, 395

               
               
               Conread position:94-538
               
               
               Cow position:chr7:28846612-28847058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):27, 38

               
               
               Conread position:101-499
               
               
               Cow position:chr7:1014217-1014617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):111, 121

               
               
               Conread position:108-522
               
               
               Cow position:chr7:1439417-1439839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:272
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):17, 172

               
               
               Conread position:131-579
               
               
               Cow position:chr7:3179671-3180121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:287
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):169, 173

               
               
               Conread position:141-578
               
               
               Cow position:chr7:1014671-1015110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:286
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):52, 62

               
               
               Conread position:153-586
               
               
               Cow position:chr7:8324729-8325165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:269
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):56, 49

               
               
               Conread position:1-476
               
               
               Cow position:chr8:46816894-46817372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:296
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):39, 455

               
               
               Conread position:8-583
               
               
               Cow position:chr8:48407616-48407033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 355

               
               
               Conread position:15-246
               
               
               Cow position:chr8:48406515-48406281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):39, 72

               
               
               Conread position:18-535
               
               
               Cow position:chr8:48407016-48406494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 112

               
               
               Conread position:19-394
               
               
               Cow position:chr8:46816996-46817374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:242
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:23-494
               
               
               Cow position:chr8:48407264-48406789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:49-530
               
               
               Cow position:chr8:46816021-46816504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 157

               
               
               Conread position:49-530
               
               
               Cow position:chr8:46816609-46817092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 169

               
               
               Conread position:49-531
               
               
               Cow position:chr8:45201162-45201646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):313, 309

               
               
               Conread position:49-578
               
               
               Cow position:chr8:46816357-46816890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 157

               
               
               Conread position:49-581
               
               
               Cow position:chr8:46816105-46816639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 169

               
               
               Conread position:49-583
               
               
               Cow position:chr8:46816525-46817062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):292, 288

               
               
               Conread position:50-579
               
               
               Cow position:chr8:46816274-46816805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):312, 308

               
               
               Conread position:51-571
               
               
               Cow position:chr8:48406812-48406290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 22

               
               
               Conread position:52-305
               
               
               Cow position:chr8:45201753-45202006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):219, 235

               
               
               Conread position:52-328
               
               
               Cow position:chr8:45201669-45201944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):273, 0

               
               
               Conread position:52-519
               
               
               Cow position:chr8:45201333-45201802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):434, 0

               
               
               Conread position:52-528
               
               
               Cow position:chr8:46816864-46817342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 97

               
               
               Conread position:52-535
               
               
               Cow position:chr8:48407399-48406914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):314, 319

               
               
               Conread position:52-536
               
               
               Cow position:chr8:45201417-45201903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 49

               
               
               Conread position:52-558
               
               
               Cow position:chr8:55581221-55581729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:314
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):408, 0

               
               
               Conread position:52-567
               
               
               Cow position:chr8:48407063-48406546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 170

               
               
               Conread position:56-519
               
               
               Cow position:chr8:45201085-45201550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 46

               
               
               Conread position:56-536
               
               
               Cow position:chr8:48407647-48407165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):428, 0

               
               
               Conread position:63-579
               
               
               Cow position:chr8:55580727-55581246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 405

               
               
               Conread position:64-579
               
               
               Cow position:chr8:45201261-45201778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):298, 294

               
               
               Conread position:69-568
               
               
               Cow position:chr8:46816797-46817298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 137

               
               
               Conread position:72-519
               
               
               Cow position:chr8:55581157-55581606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):406, 0

               
               
               Conread position:72-529
               
               
               Cow position:chr8:55580989-55581448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):415, 0

               
               
               Conread position:72-583
               
               
               Cow position:chr8:46816716-46817230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 61

               
               
               Conread position:73-407
               
               
               Cow position:chr8:45201606-45201940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:73-528
               
               
               Cow position:chr8:45201018-45201476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):413, 0

               
               
               Conread position:73-579
               
               
               Cow position:chr8:55580906-55581414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):303, 311

               
               
               Conread position:73-580
               
               
               Cow position:chr8:48407294-48406785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 149

               
               
               Conread position:74-579
               
               
               Cow position:chr8:46815962-46816469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 99

               
               
               Conread position:84-579
               
               
               Cow position:chr8:55580833-55581330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):376, 385

               
               
               Conread position:88-581
               
               
               Cow position:chr8:45200949-45201444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 65

               
               
               Conread position:93-530
               
               
               Cow position:chr8:45200786-45201225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:273
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):269, 265

               
               
               Conread position:94-446
               
               
               Cow position:chr8:6958059-6957708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):257, 0

               
               
               Conread position:159-578
               
               
               Cow position:chr8:45200936-45201357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:271
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):58, 75

               
               
               Conread position:225-535
               
               
               Cow position:chr8:46815942-46816256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):23, 236

               
               
               Conread position:1-583
               
               
               Cow position:chrX:25309983-25310570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:13-417
               
               
               Cow position:chrX:29045071-29044664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:17-586
               
               
               Cow position:chrX:29045319-29044744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 344

               
               
               Conread position:18-464
               
               
               Cow position:chrX:13826670-13826221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:267
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):18, 237

               
               
               Conread position:18-579
               
               
               Cow position:chrX:25309916-25310482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 205

               
               
               Conread position:22-331
               
               
               Cow position:chrX:29045714-29045403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):16, 257

               
               
               Conread position:23-502
               
               
               Cow position:chrX:25324717-25324234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:305
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):21, 339

               
               
               Conread position:49-530
               
               
               Cow position:chrX:25325359-25324876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):437, 0

               
               
               Conread position:49-579
               
               
               Cow position:chrX:25325275-25324743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 173

               
               
               Conread position:49-586
               
               
               Cow position:chrX:25324855-25324315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):437, 512

               
               
               Conread position:50-579
               
               
               Cow position:chrX:25325106-25324575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 157

               
               
               Conread position:51-531
               
               
               Cow position:chrX:13826802-13826320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:298
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):142, 163

               
               
               Conread position:51-579
               
               
               Cow position:chrX:25325693-25325163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):309, 302

               
               
               Conread position:52-336
               
               
               Cow position:chrX:29044945-29044661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:52-530
               
               
               Cow position:chrX:25324936-25324456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 92

               
               
               Conread position:52-579
               
               
               Cow position:chrX:25309701-25310230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):234, 223

               
               
               Conread position:64-579
               
               
               Cow position:chrX:25325428-25324911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 143

               
               
               Conread position:67-579
               
               
               Cow position:chrX:25325592-25325079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):416, 5

               
               
               Conread position:73-353
               
               
               Cow position:chrX:14181222-14180942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):64, 60

               
               
               Conread position:73-410
               
               
               Cow position:chrX:29045743-29045408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):303, 280

               
               
               Conread position:76-581
               
               
               Cow position:chrX:25325500-25324993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):407, 485

               
               
               Conread position:88-501
               
               
               Cow position:chrX:13826933-13826518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:262
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):116, 126

               
               
               Conread position:92-458
               
               
               Cow position:chrX:29045808-29045445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):36, 29

               
               
               Conread position:95-486
               
               
               Cow position:chrX:14181284-14180893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):351, 344

               
               
               Conread position:131-522
               
               
               Cow position:chrX:25309696-25310089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 42

               
               
               Conread position:219-579
               
               
               Cow position:chrX:25325777-25325415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):51, 58

               
               
               Conread position:226-518
               
               
               Cow position:chrX:29045758-29045464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):239, 234

               
               
               Conread position:238-587
               
               
               Cow position:chrX:29045830-29045478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):37, 53

               
               
               Conread position:271-522
               
               
               Cow position:chrX:25309668-25309921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):213, 0
Conread position:	12-540
Cow position:	chr10:21939226-21938695 (view UCSC Genome Browser custom track)
Alignm length:	534
Alignm identity:	320
Alignm E-value:	2e-35
Alignm gaps (pig, cow):	47, 65
Conread position:	40-579
Cow position:	chr10:8996627-8996086 (view UCSC Genome Browser custom track)
Alignm length:	543
Alignm identity:	360
Alignm E-value:	0
Alignm gaps (pig, cow):	444, 521
Conread position:	41-581
Cow position:	chr10:9010522-9009980 (view UCSC Genome Browser custom track)
Alignm length:	546
Alignm identity:	335
Alignm E-value:	5.99756e-43
Alignm gaps (pig, cow):	81, 85
Conread position:	47-563
Cow position:	chr10:8996788-8996271 (view UCSC Genome Browser custom track)
Alignm length:	521
Alignm identity:	350
Alignm E-value:	0
Alignm gaps (pig, cow):	253, 258
Conread position:	50-583
Cow position:	chr10:8996701-8996165 (view UCSC Genome Browser custom track)
Alignm length:	540
Alignm identity:	355
Alignm E-value:	0
Alignm gaps (pig, cow):	166, 172
Conread position:	51-496
Cow position:	chr10:8996448-8996001 (view UCSC Genome Browser custom track)
Alignm length:	450
Alignm identity:	298
Alignm E-value:	0
Alignm gaps (pig, cow):	165, 169
Conread position:	52-364
Cow position:	chr10:9010175-9009863 (view UCSC Genome Browser custom track)
Alignm length:	314
Alignm identity:	199
Alignm E-value:	1e-28
Alignm gaps (pig, cow):	164, 182
Conread position:	52-412
Cow position:	chr10:9010259-9009899 (view UCSC Genome Browser custom track)
Alignm length:	362
Alignm identity:	220
Alignm E-value:	8e-26
Alignm gaps (pig, cow):	248, 253
Conread position:	57-417
Cow position:	chr10:9031231-9031591 (view UCSC Genome Browser custom track)
Alignm length:	362
Alignm identity:	225
Alignm E-value:	1e-30
Alignm gaps (pig, cow):	56, 78
Conread position:	64-579
Cow position:	chr10:8996939-8996422 (view UCSC Genome Browser custom track)
Alignm length:	519
Alignm identity:	337
Alignm E-value:	0
Alignm gaps (pig, cow):	277, 273
Conread position:	72-406
Cow position:	chr10:9031330-9031664 (view UCSC Genome Browser custom track)
Alignm length:	335
Alignm identity:	193
Alignm E-value:	1e-38
Alignm gaps (pig, cow):	0, 0
Conread position:	72-532
Cow position:	chr10:9010323-9009861 (view UCSC Genome Browser custom track)
Alignm length:	463
Alignm identity:	279
Alignm E-value:	6e-34
Alignm gaps (pig, cow):	384, 0
Conread position:	72-540
Cow position:	chr10:8996511-8996041 (view UCSC Genome Browser custom track)
Alignm length:	473
Alignm identity:	315
Alignm E-value:	0
Alignm gaps (pig, cow):	228, 233
Conread position:	92-519
Cow position:	chr10:9031182-9031611 (view UCSC Genome Browser custom track)
Alignm length:	433
Alignm identity:	284
Alignm E-value:	0
Alignm gaps (pig, cow):	48, 42
Conread position:	128-556
Cow position:	chr10:21939345-21938929 (view UCSC Genome Browser custom track)
Alignm length:	432
Alignm identity:	272
Alignm E-value:	2e-31
Alignm gaps (pig, cow):	344, 121
Conread position:	141-531
Cow position:	chr10:9010590-9010198 (view UCSC Genome Browser custom track)
Alignm length:	395
Alignm identity:	250
Alignm E-value:	2e-35
Alignm gaps (pig, cow):	221, 217
Conread position:	46-562
Cow position:	chr11:74555047-74554531 (view UCSC Genome Browser custom track)
Alignm length:	519
Alignm identity:	333
Alignm E-value:	0
Alignm gaps (pig, cow):	440, 5
Conread position:	49-326
Cow position:	chr11:74554457-74554180 (view UCSC Genome Browser custom track)
Alignm length:	279
Alignm identity:	181
Alignm E-value:	4e-28
Alignm gaps (pig, cow):	160, 171
Conread position:	51-497
Cow position:	chr11:74554623-74554175 (view UCSC Genome Browser custom track)
Alignm length:	450
Alignm identity:	309
Alignm E-value:	0
Alignm gaps (pig, cow):	173, 183
Conread position:	51-555
Cow position:	chr11:74554791-74554285 (view UCSC Genome Browser custom track)
Alignm length:	508
Alignm identity:	325
Alignm E-value:	0
Alignm gaps (pig, cow):	311, 307