Cow genome map
| Conread name: | Ss1.1-Mixn-0030k23.5 |
| Conread position: | 20-329 |
| Cow position: | chr1:2000108-1999800 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 197 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 145, 166 |
| Conread position: | 12-276 |
| Cow position: | chr11:50368552-50368288 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-239 |
| Cow position: | chr14:3060933-3060702 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 158, 179 |
| Conread position: | 20-276 |
| Cow position: | chr14:3080446-3080190 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 145, 161 |
| Conread position: | 21-239 |
| Cow position: | chr14:3061424-3061206 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 21-287 |
| Cow position: | chr14:434043-434309 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 148, 165 |
| Conread position: | 21-287 |
| Cow position: | chr14:3080613-3080347 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 144, 155 |
| Conread position: | 21-287 |
| Cow position: | chr14:3080697-3080431 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 144, 155 |
| Conread position: | 21-327 |
| Cow position: | chr14:3080529-3080224 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 145, 156 |
| Conread position: | 30-276 |
| Cow position: | chr14:3155567-3155813 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 136, 160 |
| Conread position: | 31-287 |
| Cow position: | chr14:680634-680890 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 134, 155 |
| Conread position: | 39-242 |
| Cow position: | chr14:3061742-3061539 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 126, 149 |
| Conread position: | 1-265 |
| Cow position: | chr17:41440491-41440226 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 7, 123 |
| Conread position: | 7-239 |
| Cow position: | chr17:44467575-44467807 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 158, 166 |
| Conread position: | 7-277 |
| Cow position: | chr17:44467407-44467677 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 158, 169 |
| Conread position: | 9-167 |
| Cow position: | chr17:44467658-44467819 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 12-251 |
| Cow position: | chr17:41440647-41440408 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 153, 169 |
| Conread position: | 21-275 |
| Cow position: | chr17:41441058-41440804 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 144, 159 |
| Conread position: | 21-287 |
| Cow position: | chr17:41440806-41440540 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 144, 156 |
| Conread position: | 21-296 |
| Cow position: | chr17:41440974-41440699 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 88, 96 |
| Conread position: | 33-287 |
| Cow position: | chr17:41440542-41440288 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 133, 155 |
| Conread position: | 47-296 |
| Cow position: | chr17:41441116-41440868 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 118, 129 |
| Conread position: | 3-696 |
| Cow position: | chr18:44818602-44819290 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 627 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 632, 502 |
| Conread position: | 6-251 |
| Cow position: | chr18:56391464-56391219 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 159, 189 |
| Conread position: | 12-276 |
| Cow position: | chr18:56391929-56391665 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 20-241 |
| Cow position: | chr18:56329870-56329649 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 145, 151 |
| Conread position: | 21-220 |
| Cow position: | chr18:56329785-56329586 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 148, 154 |
| Conread position: | 21-246 |
| Cow position: | chr18:56391365-56391140 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 76, 70 |
| Conread position: | 21-276 |
| Cow position: | chr18:56391113-56390858 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 144, 160 |
| Conread position: | 21-277 |
| Cow position: | chr18:56391281-56391025 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 147, 157 |
| Conread position: | 21-287 |
| Cow position: | chr18:56329365-56329099 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 144, 153 |
| Conread position: | 9-287 |
| Cow position: | chr2:86465318-86465596 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 156, 167 |
| Conread position: | 21-287 |
| Cow position: | chr21:12659064-12659330 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 158, 151 |
| Conread position: | 21-288 |
| Cow position: | chr21:12659232-12659499 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 145, 169 |
| Conread position: | 10-277 |
| Cow position: | chr25:25652912-25653179 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 161, 170 |
| Conread position: | 11-276 |
| Cow position: | chr25:25652241-25652506 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 149, 165 |
| Conread position: | 12-246 |
| Cow position: | chr25:24385194-24384960 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-296 |
| Cow position: | chr25:34473813-34474094 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 20-287 |
| Cow position: | chr25:25652418-25652685 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 145, 156 |
| Conread position: | 21-239 |
| Cow position: | chr25:33530544-33530762 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 139, 160 |
| Conread position: | 21-246 |
| Cow position: | chr25:3676139-3676364 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 159, 151 |
| Conread position: | 21-246 |
| Cow position: | chr25:33127865-33128089 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 144, 158 |
| Conread position: | 21-251 |
| Cow position: | chr25:24385017-24384787 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 135, 155 |
| Conread position: | 21-251 |
| Cow position: | chr25:33506895-33507125 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 21-251 |
| Cow position: | chr25:33529161-33529391 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 159, 151 |
| Conread position: | 21-251 |
| Cow position: | chr25:33529245-33529475 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 145, 179 |
| Conread position: | 21-251 |
| Cow position: | chr25:33530124-33530354 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 21-265 |
| Cow position: | chr25:3636247-3636003 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 135, 159 |
| Conread position: | 21-265 |
| Cow position: | chr25:25653007-25653251 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 139, 155 |
| Conread position: | 21-274 |
| Cow position: | chr25:24385101-24384848 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 148, 161 |
| Conread position: | 21-276 |
| Cow position: | chr25:4657318-4657063 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 21-287 |
| Cow position: | chr25:4657402-4657136 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 85, 76 |
| Conread position: | 21-287 |
| Cow position: | chr25:33506811-33507077 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 145, 172 |
| Conread position: | 21-287 |
| Cow position: | chr25:34733946-34733680 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 246, 251 |
| Conread position: | 21-291 |
| Cow position: | chr25:25652587-25652857 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 146, 161 |
| Conread position: | 21-347 |
| Cow position: | chr25:3664330-3664655 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 202 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 145, 156 |
| Conread position: | 41-276 |
| Cow position: | chr25:25652187-25652422 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 127, 136 |
| Conread position: | 47-287 |
| Cow position: | chr25:4657460-4657220 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 143, 125 |
| Conread position: | 457-695 |
| Cow position: | chr26:8231092-8230855 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 136 |
| Conread position: | 20-331 |
| Cow position: | chr3:20194952-20195261 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 140, 161 |
| Conread position: | 21-297 |
| Cow position: | chr3:20194785-20195064 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 257, 0 |
| Conread position: | 40-277 |
| Cow position: | chr3:20194444-20194681 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 150, 129 |
| Conread position: | 11-251 |
| Cow position: | chr4:65349930-65350170 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 18, 25 |
| Conread position: | 11-251 |
| Cow position: | chr4:65350098-65350338 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 157, 170 |
| Conread position: | 11-252 |
| Cow position: | chr4:65350350-65350588 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 158, 137 |
| Conread position: | 12-251 |
| Cow position: | chr4:65350183-65350422 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 70, 80 |
| Conread position: | 12-251 |
| Cow position: | chr4:65703529-65703290 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 154, 163 |
| Conread position: | 12-276 |
| Cow position: | chr4:65494797-65494533 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 238, 251 |
| Conread position: | 12-287 |
| Cow position: | chr4:65703613-65703338 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 21-221 |
| Cow position: | chr4:65703436-65703236 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 21-252 |
| Cow position: | chr4:65261405-65261174 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 62, 74 |
| Conread position: | 21-252 |
| Cow position: | chr4:65494704-65494473 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 147, 157 |
| Conread position: | 21-287 |
| Cow position: | chr4:65121764-65122030 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 144, 155 |
| Conread position: | 34-291 |
| Cow position: | chr4:65121132-65121389 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-276 |
| Cow position: | chr6:49428366-49428630 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 54, 48 |
| Conread position: | 12-276 |
| Cow position: | chr6:49428534-49428798 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 154, 164 |
| Conread position: | 21-265 |
| Cow position: | chr6:49428795-49429039 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 169, 162 |
| Conread position: | 1-275 |
| Cow position: | chr7:12293726-12294001 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 7, 181 |
| Conread position: | 7-242 |
| Cow position: | chr7:12293649-12293884 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 159, 169 |
| Conread position: | 12-314 |
| Cow position: | chr7:28846729-28847032 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 167, 151 |
| Conread position: | 21-275 |
| Cow position: | chr7:28846570-28846824 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 51, 58 |
| Conread position: | 21-276 |
| Cow position: | chr7:12293579-12293834 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 144, 160 |
| Conread position: | 21-250 |
| Cow position: | chrX:14181327-14181098 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 144, 155 |
| Conread position: | 21-287 |
| Cow position: | chrX:14181243-14180977 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 144, 158 |
| Conread position: | 21-293 |
| Cow position: | chrX:13826801-13826530 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 160, 153 |