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Cow genome map

           
Conread name:
           
Ss1.1-Mixn-0032m21.5
        

               
Conread position:
               
81-359
               

               
Cow position:
               
chr11:50368527-50368252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
129, 143
               

               
Conread position:
               
91-478
               

               
Cow position:
               
chr11:74555100-74554715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
195, 199
               

               
Conread position:
               
100-415
               

               
Cow position:
               
chr11:50368592-50368277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 111
               

               
Conread position:
               
106-465
               

               
Cow position:
               
chr11:74554833-74554474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
114, 104
               

               
Conread position:
               
107-466
               

               
Cow position:
               
chr11:74555000-74554641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
100, 95
               

               
Conread position:
               
128-465
               

               
Cow position:
               
chr11:50368648-50368311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
43, 23
               

               
Conread position:
               
278-467
               

               
Cow position:
               
chr11:50368582-50368393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
68-469
               

               
Cow position:
               
chr13:22125330-22125731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
213, 221
               

               
Conread position:
               
72-468
               

               
Cow position:
               
chr13:22124914-22125310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
76-490
               

               
Cow position:
               
chr13:22125422-22125836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
54, 63
               

               
Conread position:
               
76-490
               

               
Cow position:
               
chr13:24162560-24162974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 129
               

               
Conread position:
               
81-467
               

               
Cow position:
               
chr13:22124755-22125141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
201, 208
               

               
Conread position:
               
81-467
               

               
Cow position:
               
chr13:24162481-24162867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
201, 208
               

               
Conread position:
               
83-469
               

               
Cow position:
               
chr13:22125177-22125563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
213, 220
               

               
Conread position:
               
84-469
               

               
Cow position:
               
chr13:22125010-22125395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
134, 126
               

               
Conread position:
               
84-469
               

               
Cow position:
               
chr13:24162736-24163121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
134, 126
               

               
Conread position:
               
84-469
               

               
Cow position:
               
chr13:24163072-24163457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
198, 205
               

               
Conread position:
               
84-490
               

               
Cow position:
               
chr13:22124842-22125248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
116, 121
               

               
Conread position:
               
91-468
               

               
Cow position:
               
chr13:24162659-24163036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
97-469
               

               
Cow position:
               
chr13:22124687-22125059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
269, 276
               

               
Conread position:
               
97-469
               

               
Cow position:
               
chr13:24162413-24162785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
269, 276
               

               
Conread position:
               
100-469
               

               
Cow position:
               
chr13:24162920-24163289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
350, 357
               

               
Conread position:
               
101-447
               

               
Cow position:
               
chr13:39930830-39931174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
316, 0
               

               
Conread position:
               
101-469
               

               
Cow position:
               
chr13:22125279-22125647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
57, 52
               

               
Conread position:
               
101-469
               

               
Cow position:
               
chr13:24163005-24163373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
57, 52
               

               
Conread position:
               
101-469
               

               
Cow position:
               
chr13:39930662-39931030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
101-490
               

               
Cow position:
               
chr13:22125111-22125500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
349, 356
               

               
Conread position:
               
101-490
               

               
Cow position:
               
chr13:24162837-24163226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
349, 356
               

               
Conread position:
               
107-486
               

               
Cow position:
               
chr13:24163263-24163642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
175, 182
               

               
Conread position:
               
149-469
               

               
Cow position:
               
chr13:39930794-39931114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
300, 307
               

               
Conread position:
               
150-469
               

               
Cow position:
               
chr13:39930627-39930946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
184-490
               

               
Cow position:
               
chr13:22124690-22124996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
112, 125
               

               
Conread position:
               
184-490
               

               
Cow position:
               
chr13:24162416-24162722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
112, 125
               

               
Conread position:
               
26-322
               

               
Cow position:
               
chr14:3060956-3060663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
265, 46
               

               
Conread position:
               
35-492
               

               
Cow position:
               
chr14:3061791-3061333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 51
               

               
Conread position:
               
61-492
               

               
Cow position:
               
chr14:3061680-3061249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 148
               

               
Conread position:
               
62-379
               

               
Cow position:
               
chr14:3080364-3080047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
69-486
               

               
Cow position:
               
chr14:3061336-3060916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
72, 67
               

               
Conread position:
               
70-322
               

               
Cow position:
               
chr14:434132-434384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
146, 140
               

               
Conread position:
               
70-377
               

               
Cow position:
               
chr14:3060999-3060692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 139
               

               
Conread position:
               
70-465
               

               
Cow position:
               
chr14:680461-680856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
70-470
               

               
Cow position:
               
chr14:3061251-3060851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
246, 236
               

               
Conread position:
               
81-460
               

               
Cow position:
               
chr14:680808-681187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
81-467
               

               
Cow position:
               
chr14:25895615-25896001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
138, 130
               

               
Conread position:
               
84-340
               

               
Cow position:
               
chr14:3155577-3155833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
84-379
               

               
Cow position:
               
chr14:434062-434357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
84-450
               

               
Cow position:
               
chr14:680727-681093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
281, 318
               

               
Conread position:
               
84-460
               

               
Cow position:
               
chr14:680559-680935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
84-464
               

               
Cow position:
               
chr14:447841-448221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
198, 206
               

               
Conread position:
               
84-465
               

               
Cow position:
               
chr14:3080426-3080045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 127
               

               
Conread position:
               
84-465
               

               
Cow position:
               
chr14:3127938-3127557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
283, 290
               

               
Conread position:
               
84-465
               

               
Cow position:
               
chr14:25895450-25895831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
313, 317
               

               
Conread position:
               
84-466
               

               
Cow position:
               
chr14:680307-680689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
84-467
               

               
Cow position:
               
chr14:447673-448056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
137, 144
               

               
Conread position:
               
86-460
               

               
Cow position:
               
chr14:3061403-3061029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 204
               

               
Conread position:
               
90-493
               

               
Cow position:
               
chr14:680397-680800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
91-460
               

               
Cow position:
               
chr14:433817-434186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 119
               

               
Conread position:
               
92-468
               

               
Cow position:
               
chr14:3128013-3127638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
359, 9
               

               
Conread position:
               
97-340
               

               
Cow position:
               
chr14:3079909-3079666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
97-465
               

               
Cow position:
               
chr14:3080917-3080549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
32, 37
               

               
Conread position:
               
97-490
               

               
Cow position:
               
chr14:25895715-25896108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
45, 52
               

               
Conread position:
               
100-260
               

               
Cow position:
               
chr14:3155677-3155837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
30, 36
               

               
Conread position:
               
100-324
               

               
Cow position:
               
chr14:448025-448249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
43, 48
               

               
Conread position:
               
100-490
               

               
Cow position:
               
chr14:3061053-3060663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
27, 34
               

               
Conread position:
               
100-492
               

               
Cow position:
               
chr14:433910-434302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
101-333
               

               
Cow position:
               
chr14:3156251-3156483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
101-377
               

               
Cow position:
               
chr14:663386-663110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
101-424
               

               
Cow position:
               
chr14:3155510-3155833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
294, 298
               

               
Conread position:
               
101-460
               

               
Cow position:
               
chr14:680240-680599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
101-463
               

               
Cow position:
               
chr14:25895383-25895745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
101-464
               

               
Cow position:
               
chr14:3156083-3156446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
101-465
               

               
Cow position:
               
chr14:447522-447886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
217, 213
               

               
Conread position:
               
101-465
               

               
Cow position:
               
chr14:3080745-3080381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
119, 113
               

               
Conread position:
               
101-465
               

               
Cow position:
               
chr14:25895887-25896251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
117, 109
               

               
Conread position:
               
101-467
               

               
Cow position:
               
chr14:25895299-25895665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
262, 256
               

               
Conread position:
               
101-487
               

               
Cow position:
               
chr14:25895047-25895433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
117, 109
               

               
Conread position:
               
101-490
               

               
Cow position:
               
chr14:433995-434384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
101-490
               

               
Cow position:
               
chr14:3080241-3079852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 108
               

               
Conread position:
               
101-504
               

               
Cow position:
               
chr14:3061136-3060734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 189
               

               
Conread position:
               
106-504
               

               
Cow position:
               
chr14:3061467-3061070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 28
               

               
Conread position:
               
107-394
               

               
Cow position:
               
chr14:3127579-3127292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
113, 97
               

               
Conread position:
               
107-451
               

               
Cow position:
               
chr14:447780-448124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
259, 267
               

               
Conread position:
               
107-459
               

               
Cow position:
               
chr14:3128083-3127731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
107-464
               

               
Cow position:
               
chr14:3080823-3080466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
111, 107
               

               
Conread position:
               
107-465
               

               
Cow position:
               
chr14:3080067-3079709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
107-465
               

               
Cow position:
               
chr14:3127747-3127389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
107-465
               

               
Cow position:
               
chr14:3155432-3155790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
111, 102
               

               
Conread position:
               
107-465
               

               
Cow position:
               
chr14:25895137-25895495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
36, 41
               

               
Conread position:
               
107-467
               

               
Cow position:
               
chr14:3080571-3080211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
107-467
               

               
Cow position:
               
chr14:3127663-3127303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
107-468
               

               
Cow position:
               
chr14:680666-681027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
107-492
               

               
Cow position:
               
chr14:25895221-25895606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
40, 20
               

               
Conread position:
               
108-379
               

               
Cow position:
               
chr14:3079982-3079711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-460
               

               
Cow position:
               
chr14:663462-663111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
98, 93
               

               
Conread position:
               
109-460
               

               
Cow position:
               
chr14:25895811-25896162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
266, 280
               

               
Conread position:
               
110-465
               

               
Cow position:
               
chr14:25895560-25895915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
194, 207
               

               
Conread position:
               
110-468
               

               
Cow position:
               
chr14:25894972-25895330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
193, 206
               

               
Conread position:
               
113-513
               

               
Cow position:
               
chr14:3061796-3061395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
282, 286
               

               
Conread position:
               
119-465
               

               
Cow position:
               
chr14:433761-434107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 41
               

               
Conread position:
               
130-465
               

               
Cow position:
               
chr14:680185-680520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
158-467
               

               
Cow position:
               
chr14:663496-663188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
124, 22
               

               
Conread position:
               
160-393
               

               
Cow position:
               
chr14:182-415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
151, 157
               

               
Conread position:
               
172-477
               

               
Cow position:
               
chr14:447509-447812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
295, 0
               

               
Conread position:
               
194-460
               

               
Cow position:
               
chr14:3128164-3127898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
26, 21
               

               
Conread position:
               
217-467
               

               
Cow position:
               
chr14:433775-434025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
37, 30
               

               
Conread position:
               
82-497
               

               
Cow position:
               
chr15:48468685-48469107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
5, 93
               

               
Conread position:
               
85-428
               

               
Cow position:
               
chr15:48468437-48468778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
54, 41
               

               
Conread position:
               
92-379
               

               
Cow position:
               
chr15:19138979-19138693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
37, 7
               

               
Conread position:
               
101-330
               

               
Cow position:
               
chr15:19138887-19138658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
216, 196
               

               
Conread position:
               
107-492
               

               
Cow position:
               
chr15:19139133-19138748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
293, 277
               

               
Conread position:
               
161-467
               

               
Cow position:
               
chr15:19139162-19138857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
59, 9
               

               
Conread position:
               
100-331
               

               
Cow position:
               
chr16:36865393-36865162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
122, 112
               

               
Conread position:
               
30-465
               

               
Cow position:
               
chr17:41441174-41440742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 43
               

               
Conread position:
               
54-504
               

               
Cow position:
               
chr17:41440904-41440452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 443
               

               
Conread position:
               
55-504
               

               
Cow position:
               
chr17:44467324-44467775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 158
               

               
Conread position:
               
69-460
               

               
Cow position:
               
chr17:44467425-44467816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 141
               

               
Conread position:
               
71-463
               

               
Cow position:
               
chr17:44467676-44468071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 320
               

               
Conread position:
               
73-468
               

               
Cow position:
               
chr17:44467849-44468244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 137
               

               
Conread position:
               
81-465
               

               
Cow position:
               
chr17:41440958-41440574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 92
               

               
Conread position:
               
86-463
               

               
Cow position:
               
chr17:44467610-44467987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
90-466
               

               
Cow position:
               
chr17:41440697-41440321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
91-490
               

               
Cow position:
               
chr17:41440612-41440213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
100-352
               

               
Cow position:
               
chr17:44468128-44468380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
100-434
               

               
Cow position:
               
chr17:44468044-44468378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
116, 110
               

               
Conread position:
               
100-504
               

               
Cow position:
               
chr17:44467792-44468195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 111
               

               
Conread position:
               
101-493
               

               
Cow position:
               
chr17:41441022-41440630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 156
               

               
Conread position:
               
107-509
               

               
Cow position:
               
chr17:41440764-41440364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
392, 0
               

               
Conread position:
               
142-493
               

               
Cow position:
               
chr17:41441146-41440798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
263, 9
               

               
Conread position:
               
22-330
               

               
Cow position:
               
chr18:54664026-54664332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
8, 60
               

               
Conread position:
               
22-434
               

               
Cow position:
               
chr18:54669827-54669406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
38, 118
               

               
Conread position:
               
26-523
               

               
Cow position:
               
chr18:54668842-54668344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 121
               

               
Conread position:
               
30-492
               

               
Cow position:
               
chr18:56391654-56391190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 43
               

               
Conread position:
               
37-415
               

               
Cow position:
               
chr18:56391222-56390847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
43-438
               

               
Cow position:
               
chr18:44817785-44818180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
84, 93
               

               
Conread position:
               
52-298
               

               
Cow position:
               
chr18:47847929-47847683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
242, 11
               

               
Conread position:
               
52-414
               

               
Cow position:
               
chr18:54680584-54680225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
254, 27
               

               
Conread position:
               
57-344
               

               
Cow position:
               
chr18:44944343-44944634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
14, 48
               

               
Conread position:
               
58-460
               

               
Cow position:
               
chr18:55497479-55497077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 20
               

               
Conread position:
               
58-509
               

               
Cow position:
               
chr18:22844396-22843943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
29, 441
               

               
Conread position:
               
59-515
               

               
Cow position:
               
chr18:22843715-22843254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
97, 338
               

               
Conread position:
               
60-460
               

               
Cow position:
               
chr18:54668968-54668570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 22
               

               
Conread position:
               
61-465
               

               
Cow position:
               
chr18:56391369-56390965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 81
               

               
Conread position:
               
61-526
               

               
Cow position:
               
chr18:56391453-56390987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 342
               

               
Conread position:
               
69-434
               

               
Cow position:
               
chr18:47846531-47846166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
65, 71
               

               
Conread position:
               
70-492
               

               
Cow position:
               
chr18:56329864-56329442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
326, 332
               

               
Conread position:
               
81-359
               

               
Cow position:
               
chr18:56391904-56391629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
129, 143
               

               
Conread position:
               
81-460
               

               
Cow position:
               
chr18:53610217-53609838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
319, 314
               

               
Conread position:
               
81-465
               

               
Cow position:
               
chr18:56329769-56329385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
15, 21
               

               
Conread position:
               
84-419
               

               
Cow position:
               
chr18:47846348-47846013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
234, 212
               

               
Conread position:
               
84-439
               

               
Cow position:
               
chr18:22844029-22843671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
43, 52
               

               
Conread position:
               
85-465
               

               
Cow position:
               
chr18:22844199-22843816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
97, 188
               

               
Conread position:
               
86-358
               

               
Cow position:
               
chr18:56391092-56390821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
53, 42
               

               
Conread position:
               
86-460
               

               
Cow position:
               
chr18:47846430-47846056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
308, 314
               

               
Conread position:
               
90-300
               

               
Cow position:
               
chr18:42724161-42723951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
90-378
               

               
Cow position:
               
chr18:42724244-42723957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
128, 9
               

               
Conread position:
               
97-465
               

               
Cow position:
               
chr18:42724406-42724038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
98-433
               

               
Cow position:
               
chr18:50281941-50282276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
190, 196
               

               
Conread position:
               
100-430
               

               
Cow position:
               
chr18:56316738-56317068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
256, 261
               

               
Conread position:
               
100-430
               

               
Cow position:
               
chr18:56391969-56391642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 111
               

               
Conread position:
               
100-460
               

               
Cow position:
               
chr18:56391498-56391138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 289
               

               
Conread position:
               
100-465
               

               
Cow position:
               
chr18:56391246-56390881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
100-466
               

               
Cow position:
               
chr18:54668846-54668480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
73, 65
               

               
Conread position:
               
100-467
               

               
Cow position:
               
chr18:49033197-49032830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
100-490
               

               
Cow position:
               
chr18:49033365-49032975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
118, 111
               

               
Conread position:
               
100-518
               

               
Cow position:
               
chr18:47846584-47846169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 26
               

               
Conread position:
               
101-358
               

               
Cow position:
               
chr18:55497268-55497010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
194, 199
               

               
Conread position:
               
101-378
               

               
Cow position:
               
chr18:50282028-50282305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
104, 109
               

               
Conread position:
               
101-415
               

               
Cow position:
               
chr18:44818572-44818886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
28, 34
               

               
Conread position:
               
101-459
               

               
Cow position:
               
chr18:49033028-49032671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
276, 271
               

               
Conread position:
               
101-460
               

               
Cow position:
               
chr18:56267526-56267167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
101-463
               

               
Cow position:
               
chr18:42724486-42724124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
117, 109
               

               
Conread position:
               
101-463
               

               
Cow position:
               
chr18:53610365-53610003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
111, 124
               

               
Conread position:
               
101-463
               

               
Cow position:
               
chr18:53635522-53635160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
101-463
               

               
Cow position:
               
chr18:56128643-56129005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
101-464
               

               
Cow position:
               
chr18:55497520-55497157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
101-465
               

               
Cow position:
               
chr18:53587065-53586701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
124, 110
               

               
Conread position:
               
101-465
               

               
Cow position:
               
chr18:56329497-56329133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
279, 292
               

               
Conread position:
               
101-465
               

               
Cow position:
               
chr18:56329581-56329217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
109, 124
               

               
Conread position:
               
101-465
               

               
Cow position:
               
chr18:56329917-56329553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
283, 293
               

               
Conread position:
               
101-467
               

               
Cow position:
               
chr18:53635606-53635240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
290, 279
               

               
Conread position:
               
101-467
               

               
Cow position:
               
chr18:56128559-56128925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
290, 280
               

               
Conread position:
               
101-467
               

               
Cow position:
               
chr18:56316487-56316853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
283, 287
               

               
Conread position:
               
101-467
               

               
Cow position:
               
chr18:56329413-56329047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
269, 273
               

               
Conread position:
               
101-468
               

               
Cow position:
               
chr18:53586981-53586614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
34, 44
               

               
Conread position:
               
101-469
               

               
Cow position:
               
chr18:56494030-56494398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
101-492
               

               
Cow position:
               
chr18:53610281-53609890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
280, 284
               

               
Conread position:
               
106-455
               

               
Cow position:
               
chr18:56316072-56316421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
106-467
               

               
Cow position:
               
chr18:56316408-56316769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
106-468
               

               
Cow position:
               
chr18:49032939-49032577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
119, 109
               

               
Conread position:
               
107-405
               

               
Cow position:
               
chr18:55497346-55497048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
111, 103
               

               
Conread position:
               
107-415
               

               
Cow position:
               
chr18:56267436-56267128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
272, 280
               

               
Conread position:
               
107-450
               

               
Cow position:
               
chr18:53610443-53610100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
112, 103
               

               
Conread position:
               
107-450
               

               
Cow position:
               
chr18:53635684-53635341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
107-459
               

               
Cow position:
               
chr18:52012167-52011815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
26, 35
               

               
Conread position:
               
107-460
               

               
Cow position:
               
chr18:33064494-33064141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
113, 102
               

               
Conread position:
               
107-460
               

               
Cow position:
               
chr18:52012083-52011730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
107-462
               

               
Cow position:
               
chr18:52012251-52011896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
297, 274
               

               
Conread position:
               
107-464
               

               
Cow position:
               
chr18:49033106-49032750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
56, 49
               

               
Conread position:
               
107-465
               

               
Cow position:
               
chr18:56329323-56328965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
179, 183
               

               
Conread position:
               
107-466
               

               
Cow position:
               
chr18:53635768-53635409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
107-466
               

               
Cow position:
               
chr18:56128397-56128756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
27, 35
               

               
Conread position:
               
107-467
               

               
Cow position:
               
chr18:49032686-49032326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
273, 304
               

               
Conread position:
               
107-467
               

               
Cow position:
               
chr18:52011999-52011639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
280, 274
               

               
Conread position:
               
107-468
               

               
Cow position:
               
chr18:49033274-49032913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
107-468
               

               
Cow position:
               
chr18:56316577-56316938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
103, 107
               

               
Conread position:
               
107-469
               

               
Cow position:
               
chr18:56128145-56128507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
107-490
               

               
Cow position:
               
chr18:56316325-56316708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
107-492
               

               
Cow position:
               
chr18:42724564-42724179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
54, 47
               

               
Conread position:
               
107-492
               

               
Cow position:
               
chr18:56330163-56329778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
111, 102
               

               
Conread position:
               
108-377
               

               
Cow position:
               
chr18:56329154-56328885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
108-507
               

               
Cow position:
               
chr18:55497681-55497283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
187, 192
               

               
Conread position:
               
109-493
               

               
Cow position:
               
chr18:55497596-55497212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
110, 105
               

               
Conread position:
               
110-450
               

               
Cow position:
               
chr18:49032515-49032175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
108, 93
               

               
Conread position:
               
110-467
               

               
Cow position:
               
chr18:56329656-56329299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
119, 123
               

               
Conread position:
               
110-474
               

               
Cow position:
               
chr18:42724309-42723945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
19, 23
               

               
Conread position:
               
116-459
               

               
Cow position:
               
chr18:47846652-47846310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
97, 104
               

               
Conread position:
               
128-465
               

               
Cow position:
               
chr18:56392025-56391688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
43, 23
               

               
Conread position:
               
135-497
               

               
Cow position:
               
chr18:22844062-22843700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
243, 256
               

               
Conread position:
               
146-464
               

               
Cow position:
               
chr18:44817801-44818122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
10, 91
               

               
Conread position:
               
147-460
               

               
Cow position:
               
chr18:42724608-42724295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
172, 165
               

               
Conread position:
               
148-460
               

               
Cow position:
               
chr18:47846704-47846392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
150, 156
               

               
Conread position:
               
148-460
               

               
Cow position:
               
chr18:52012378-52012066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
148, 153
               

               
Conread position:
               
148-487
               

               
Cow position:
               
chr18:55442331-55442670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
163, 169
               

               
Conread position:
               
165-425
               

               
Cow position:
               
chr18:22844371-22844111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
213, 222
               

               
Conread position:
               
167-422
               

               
Cow position:
               
chr18:54670267-54670009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
19, 6
               

               
Conread position:
               
170-428
               

               
Cow position:
               
chr18:44944375-44944634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
139, 124
               

               
Conread position:
               
171-466
               

               
Cow position:
               
chr18:46317203-46316908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
224, 230
               

               
Conread position:
               
175-414
               

               
Cow position:
               
chr18:54664093-54664332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
44, 35
               

               
Conread position:
               
177-465
               

               
Cow position:
               
chr18:44817748-44818039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
23, 44
               

               
Conread position:
               
183-377
               

               
Cow position:
               
chr18:54687758-54687952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
28, 41
               

               
Conread position:
               
183-461
               

               
Cow position:
               
chr18:54668931-54668653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
70, 87
               

               
Conread position:
               
185-463
               

               
Cow position:
               
chr18:44818572-44818850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
30, 26
               

               
Conread position:
               
185-465
               

               
Cow position:
               
chr18:56267526-56267246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
217, 199
               

               
Conread position:
               
232-467
               

               
Cow position:
               
chr18:47846704-47846469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
158, 146
               

               
Conread position:
               
249-522
               

               
Cow position:
               
chr18:54664083-54664353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
152, 146
               

               
Conread position:
               
251-460
               

               
Cow position:
               
chr18:54687742-54687951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
50, 58
               

               
Conread position:
               
278-467
               

               
Cow position:
               
chr18:56391959-56391770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
107-465
               

               
Cow position:
               
chr19:23649410-23649768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
172-452
               

               
Cow position:
               
chr19:17615103-17615383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
85, 77
               

               
Conread position:
               
191-467
               

               
Cow position:
               
chr19:23649410-23649686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
10, 16
               

               
Conread position:
               
33-394
               

               
Cow position:
               
chr2:14374933-14375303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
15, 71
               

               
Conread position:
               
84-393
               

               
Cow position:
               
chr2:82800029-82800338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
12, 17
               

               
Conread position:
               
107-460
               

               
Cow position:
               
chr2:82799548-82799901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
111, 99
               

               
Conread position:
               
107-464
               

               
Cow position:
               
chr2:82799800-82800157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
91, 98
               

               
Conread position:
               
107-468
               

               
Cow position:
               
chr2:82799632-82799993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
259, 266
               

               
Conread position:
               
194-389
               

               
Cow position:
               
chr2:16555394-16555192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
25, 17
               

               
Conread position:
               
70-331
               

               
Cow position:
               
chr21:12659741-12660002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
76-465
               

               
Cow position:
               
chr21:12658991-12659380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
241, 229
               

               
Conread position:
               
84-459
               

               
Cow position:
               
chr21:12608595-12608220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
86-460
               

               
Cow position:
               
chr21:12608425-12608051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
92-462
               

               
Cow position:
               
chr21:12608754-12608385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
92-464
               

               
Cow position:
               
chr21:12659428-12659799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
92-465
               

               
Cow position:
               
chr21:12608670-12608298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
37, 9
               

               
Conread position:
               
101-376
               

               
Cow position:
               
chr21:12608242-12607967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
30, 25
               

               
Conread position:
               
101-415
               

               
Cow position:
               
chr21:12659688-12660002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
101-463
               

               
Cow position:
               
chr21:12659520-12659882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 109
               

               
Conread position:
               
101-467
               

               
Cow position:
               
chr21:12659100-12659466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
101-468
               

               
Cow position:
               
chr21:12658932-12659299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 217
               

               
Conread position:
               
106-465
               

               
Cow position:
               
chr21:12659357-12659716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 104
               

               
Conread position:
               
106-492
               

               
Cow position:
               
chr21:12608489-12608103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
107-463
               

               
Cow position:
               
chr21:12659274-12659630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
340, 334
               

               
Conread position:
               
107-478
               

               
Cow position:
               
chr21:12608824-12608455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
111, 104
               

               
Conread position:
               
107-493
               

               
Cow position:
               
chr21:12659190-12659576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
288, 295
               

               
Conread position:
               
108-475
               

               
Cow position:
               
chr21:12658855-12659221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 287
               

               
Conread position:
               
109-467
               

               
Cow position:
               
chr21:12659612-12659970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
110-468
               

               
Cow position:
               
chr21:12608317-12607959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
151-464
               

               
Cow position:
               
chr21:12658814-12659127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
166, 154
               

               
Conread position:
               
84-331
               

               
Cow position:
               
chr22:12418692-12418445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
198, 206
               

               
Conread position:
               
100-425
               

               
Cow position:
               
chr22:12418760-12418433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
118, 114
               

               
Conread position:
               
106-460
               

               
Cow position:
               
chr22:12419006-12418652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
274, 281
               

               
Conread position:
               
1-497
               

               
Cow position:
               
chr25:3675913-3676403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 8
               

               
Conread position:
               
1-540
               

               
Cow position:
               
chr25:33506660-33507202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
514
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
18-460
               

               
Cow position:
               
chr25:33530236-33530687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 369
               

               
Conread position:
               
25-460
               

               
Cow position:
               
chr25:3663873-3664305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 40
               

               
Conread position:
               
25-464
               

               
Cow position:
               
chr25:4657529-4657087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 24
               

               
Conread position:
               
31-465
               

               
Cow position:
               
chr25:33530005-33530440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 51
               

               
Conread position:
               
37-352
               

               
Cow position:
               
chr25:3636272-3635960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
181, 34
               

               
Conread position:
               
44-518
               

               
Cow position:
               
chr25:33528974-33529443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
331, 8
               

               
Conread position:
               
50-377
               

               
Cow position:
               
chr25:24385030-24384705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
6, 19
               

               
Conread position:
               
52-331
               

               
Cow position:
               
chr25:3637045-3636761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
19, 43
               

               
Conread position:
               
56-370
               

               
Cow position:
               
chr25:22941321-22941009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
71, 34
               

               
Conread position:
               
57-538
               

               
Cow position:
               
chr25:33530366-33530850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 15
               

               
Conread position:
               
59-509
               

               
Cow position:
               
chr25:24385191-24384740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 141
               

               
Conread position:
               
60-463
               

               
Cow position:
               
chr25:24385441-24385039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
42, 30
               

               
Conread position:
               
61-460
               

               
Cow position:
               
chr25:25652916-25653318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
69-504
               

               
Cow position:
               
chr25:3636495-3636061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
406, 399
               

               
Conread position:
               
70-490
               

               
Cow position:
               
chr25:34473575-34473992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 63
               

               
Conread position:
               
73-521
               

               
Cow position:
               
chr25:34473659-34474105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
5, 69
               

               
Conread position:
               
76-376
               

               
Cow position:
               
chr25:326485-326787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
76-422
               

               
Cow position:
               
chr25:33530471-33530817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
302, 311
               

               
Conread position:
               
76-460
               

               
Cow position:
               
chr25:33530219-33530603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
79-504
               

               
Cow position:
               
chr25:25652685-25653109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
397, 382
               

               
Conread position:
               
79-504
               

               
Cow position:
               
chr25:33530138-33530562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
299, 309
               

               
Conread position:
               
80-415
               

               
Cow position:
               
chr25:24398744-24398409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
82-454
               

               
Cow position:
               
chr25:22940521-22940148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
5, 139
               

               
Conread position:
               
85-460
               

               
Cow position:
               
chr25:34763161-34763533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
293, 0
               

               
Conread position:
               
86-295
               

               
Cow position:
               
chr25:33529266-33529475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
86-429
               

               
Cow position:
               
chr25:4657381-4657038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
10, 16
               

               
Conread position:
               
86-450
               

               
Cow position:
               
chr25:24398987-24398626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
143, 123
               

               
Conread position:
               
86-466
               

               
Cow position:
               
chr25:24385248-24384868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 41
               

               
Conread position:
               
86-468
               

               
Cow position:
               
chr25:25652272-25652654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 124
               

               
Conread position:
               
88-493
               

               
Cow position:
               
chr25:3636560-3636155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 211
               

               
Conread position:
               
90-450
               

               
Cow position:
               
chr25:33127723-33128082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
305, 8
               

               
Conread position:
               
91-403
               

               
Cow position:
               
chr25:3664272-3664584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
92-427
               

               
Cow position:
               
chr25:3636303-3635969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 8
               

               
Conread position:
               
92-459
               

               
Cow position:
               
chr25:23267406-23267046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
269, 107
               

               
Conread position:
               
97-504
               

               
Cow position:
               
chr25:25652199-25652605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
352, 361
               

               
Conread position:
               
100-331
               

               
Cow position:
               
chr25:3676174-3676405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
100-335
               

               
Cow position:
               
chr25:24398640-24398405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
100-464
               

               
Cow position:
               
chr25:33529112-33529476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
306, 311
               

               
Conread position:
               
100-465
               

               
Cow position:
               
chr25:3664029-3664394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 287
               

               
Conread position:
               
101-318
               

               
Cow position:
               
chr25:25653127-25653344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
204, 199
               

               
Conread position:
               
101-340
               

               
Cow position:
               
chr25:23267236-23266997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
92, 20
               

               
Conread position:
               
101-352
               

               
Cow position:
               
chr25:3664366-3664614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
234, 0
               

               
Conread position:
               
101-379
               

               
Cow position:
               
chr25:22236012-22236290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
117, 111
               

               
Conread position:
               
101-450
               

               
Cow position:
               
chr25:33157290-33156941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
117, 109
               

               
Conread position:
               
101-459
               

               
Cow position:
               
chr25:24385317-24384959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 35
               

               
Conread position:
               
101-460
               

               
Cow position:
               
chr25:25652539-25652898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
101-464
               

               
Cow position:
               
chr25:3664198-3664561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 300
               

               
Conread position:
               
101-467
               

               
Cow position:
               
chr25:25652455-25652821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 110
               

               
Conread position:
               
101-468
               

               
Cow position:
               
chr25:33298998-33299365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
101-504
               

               
Cow position:
               
chr25:25652371-25652773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 189
               

               
Conread position:
               
101-512
               

               
Cow position:
               
chr25:25652623-25653035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 37
               

               
Conread position:
               
105-465
               

               
Cow position:
               
chr25:33157370-33157010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
113, 106
               

               
Conread position:
               
106-453
               

               
Cow position:
               
chr25:34732588-34732241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
285, 271
               

               
Conread position:
               
106-463
               

               
Cow position:
               
chr25:22235933-22236290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
37, 44
               

               
Conread position:
               
107-303
               

               
Cow position:
               
chr25:427350-427546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
107-394
               

               
Cow position:
               
chr25:34733988-34733701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
271, 280
               

               
Conread position:
               
107-408
               

               
Cow position:
               
chr25:33529203-33529504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
281, 277
               

               
Conread position:
               
107-460
               

               
Cow position:
               
chr25:25652797-25653150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
107-463
               

               
Cow position:
               
chr25:34473528-34473881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
337, 0
               

               
Conread position:
               
107-493
               

               
Cow position:
               
chr25:24385059-24384673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
309, 318
               

               
Conread position:
               
109-454
               

               
Cow position:
               
chr25:22941354-22941009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
29, 21
               

               
Conread position:
               
109-465
               

               
Cow position:
               
chr25:25652883-25653239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 101
               

               
Conread position:
               
110-468
               

               
Cow position:
               
chr25:3636370-3636012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
110-512
               

               
Cow position:
               
chr25:3664123-3664526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 292
               

               
Conread position:
               
116-460
               

               
Cow position:
               
chr25:34762859-34763200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
250, 258
               

               
Conread position:
               
149-378
               

               
Cow position:
               
chr25:34763474-34763703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
70, 65
               

               
Conread position:
               
149-393
               

               
Cow position:
               
chr25:427308-427552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
149-463
               

               
Cow position:
               
chr25:34763141-34763455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
149-469
               

               
Cow position:
               
chr25:33298626-33298946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
80, 85
               

               
Conread position:
               
149-469
               

               
Cow position:
               
chr25:33298710-33299030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
155-495
               

               
Cow position:
               
chr25:34734025-34733681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
159-423
               

               
Cow position:
               
chr25:36844463-36844206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
253, 108
               

               
Conread position:
               
159-424
               

               
Cow position:
               
chr25:23267262-23266997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
118, 46
               

               
Conread position:
               
161-450
               

               
Cow position:
               
chr25:326488-326777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
161-465
               

               
Cow position:
               
chr25:22940525-22940221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
64, 53
               

               
Conread position:
               
161-487
               

               
Cow position:
               
chr25:36844545-36844228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
201, 0
               

               
Conread position:
               
166-463
               

               
Cow position:
               
chr25:33157477-33157180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
57, 48
               

               
Conread position:
               
167-346
               

               
Cow position:
               
chr25:24398990-24398811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
18, 9
               

               
Conread position:
               
169-465
               

               
Cow position:
               
chr25:25652187-25652483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
175-467
               

               
Cow position:
               
chr25:4657460-4657168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 35
               

               
Conread position:
               
175-487
               

               
Cow position:
               
chr25:24398733-24398421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
301, 293
               

               
Conread position:
               
184-461
               

               
Cow position:
               
chr25:3637079-3636799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
185-349
               

               
Cow position:
               
chr25:24399212-24399048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
194-487
               

               
Cow position:
               
chr25:22235853-22236146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
24, 17
               

               
Conread position:
               
243-465
               

               
Cow position:
               
chr25:4657476-4657254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
159, 149
               

               
Conread position:
               
244-472
               

               
Cow position:
               
chr25:5034965-5034739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
140, 14
               

               
Conread position:
               
249-504
               

               
Cow position:
               
chr25:3663926-3664180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
245, 0
               

               
Conread position:
               
256-506
               

               
Cow position:
               
chr25:34473509-34473759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
131, 121
               

               
Conread position:
               
84-404
               

               
Cow position:
               
chr28:34696246-34696566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
101-484
               

               
Cow position:
               
chr28:34696011-34696391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 210
               

               
Conread position:
               
101-490
               

               
Cow position:
               
chr28:34696095-34696484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
377, 366
               

               
Conread position:
               
101-492
               

               
Cow position:
               
chr28:34696179-34696570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 137
               

               
Conread position:
               
107-319
               

               
Cow position:
               
chr28:33210417-33210630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
107-465
               

               
Cow position:
               
chr28:33210249-33210608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
312, 0
               

               
Conread position:
               
108-465
               

               
Cow position:
               
chr28:34695934-34696291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
110, 104
               

               
Conread position:
               
61-466
               

               
Cow position:
               
chr3:20194692-20195102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
70-493
               

               
Cow position:
               
chr3:20194514-20194961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
91, 84
               

               
Conread position:
               
74-367
               

               
Cow position:
               
chr3:20194434-20194728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
259, 289
               

               
Conread position:
               
86-394
               

               
Cow position:
               
chr3:20194974-20195282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
91-474
               

               
Cow position:
               
chr3:20194895-20195278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
100-322
               

               
Cow position:
               
chr3:20195072-20195294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
100-487
               

               
Cow position:
               
chr3:20194820-20195207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 110
               

               
Conread position:
               
145-468
               

               
Cow position:
               
chr3:20194695-20195020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 252
               

               
Conread position:
               
154-451
               

               
Cow position:
               
chr3:20194430-20194728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 56
               

               
Conread position:
               
249-533
               

               
Cow position:
               
chr3:20194441-20194725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
138, 132
               

               
Conread position:
               
22-430
               

               
Cow position:
               
chr4:65702860-65702452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
57, 12
               

               
Conread position:
               
22-469
               

               
Cow position:
               
chr4:65702938-65702495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
40, 12
               

               
Conread position:
               
23-469
               

               
Cow position:
               
chr4:65121467-65121916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
48, 120
               

               
Conread position:
               
26-295
               

               
Cow position:
               
chr4:65121087-65121349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
36-359
               

               
Cow position:
               
chr4:65157882-65158205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
30, 12
               

               
Conread position:
               
38-530
               

               
Cow position:
               
chr4:65261605-65261108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 107
               

               
Conread position:
               
56-469
               

               
Cow position:
               
chr4:65495056-65494636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
57-427
               

               
Cow position:
               
chr4:65121838-65122207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
13, 215
               

               
Conread position:
               
69-342
               

               
Cow position:
               
chr4:65546458-65546181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
9, 75
               

               
Conread position:
               
69-469
               

               
Cow position:
               
chr4:65350364-65350761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
249, 121
               

               
Conread position:
               
69-504
               

               
Cow position:
               
chr4:65349944-65350378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
92, 78
               

               
Conread position:
               
70-340
               

               
Cow position:
               
chr4:65494700-65494429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 70
               

               
Conread position:
               
70-465
               

               
Cow position:
               
chr4:65350113-65350504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
159, 163
               

               
Conread position:
               
70-469
               

               
Cow position:
               
chr4:65121601-65122000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 239
               

               
Conread position:
               
70-518
               

               
Cow position:
               
chr4:65703599-65703151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 63
               

               
Conread position:
               
71-490
               

               
Cow position:
               
chr4:65121686-65122105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
85, 91
               

               
Conread position:
               
73-504
               

               
Cow position:
               
chr4:65350032-65350460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 53
               

               
Conread position:
               
79-504
               

               
Cow position:
               
chr4:65703674-65703250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 58
               

               
Conread position:
               
79-516
               

               
Cow position:
               
chr4:65261730-65261289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
48, 87
               

               
Conread position:
               
80-394
               

               
Cow position:
               
chr4:65350455-65350770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
7, 56
               

               
Conread position:
               
85-421
               

               
Cow position:
               
chr4:65157837-65158182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
45, 55
               

               
Conread position:
               
86-424
               

               
Cow position:
               
chr4:65494767-65494429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 136
               

               
Conread position:
               
86-529
               

               
Cow position:
               
chr4:65350297-65350733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
129, 124
               

               
Conread position:
               
97-469
               

               
Cow position:
               
chr4:65494840-65494468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 212
               

               
Conread position:
               
99-247
               

               
Cow position:
               
chr4:65402054-65402202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
100-469
               

               
Cow position:
               
chr4:65261622-65261253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 26
               

               
Conread position:
               
101-380
               

               
Cow position:
               
chr4:65146519-65146796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
29, 35
               

               
Conread position:
               
107-426
               

               
Cow position:
               
chr4:65146441-65146760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
226, 242
               

               
Conread position:
               
148-517
               

               
Cow position:
               
chr4:65702900-65702534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
258, 263
               

               
Conread position:
               
160-426
               

               
Cow position:
               
chr4:65546447-65546181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
19, 260
               

               
Conread position:
               
162-406
               

               
Cow position:
               
chr4:65121132-65121376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
137, 147
               

               
Conread position:
               
165-463
               

               
Cow position:
               
chr4:65157833-65158140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
75, 153
               

               
Conread position:
               
167-518
               

               
Cow position:
               
chr4:65146417-65146769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
133, 142
               

               
Conread position:
               
172-490
               

               
Cow position:
               
chr4:65401869-65402193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
49, 38
               

               
Conread position:
               
177-343
               

               
Cow position:
               
chr4:65402048-65402214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
180-377
               

               
Cow position:
               
chr4:65422458-65422661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
184-336
               

               
Cow position:
               
chr4:65146941-65147093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
116, 125
               

               
Conread position:
               
235-474
               

               
Cow position:
               
chr4:65146402-65146640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
171, 14
               

               
Conread position:
               
247-533
               

               
Cow position:
               
chr4:65546444-65546154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
15, 23
               

               
Conread position:
               
257-492
               

               
Cow position:
               
chr4:65495022-65494781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
126, 132
               

               
Conread position:
               
268-469
               

               
Cow position:
               
chr4:65121154-65121355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
31, 41
               

               
Conread position:
               
70-465
               

               
Cow position:
               
chr6:49428632-49429027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 148
               

               
Conread position:
               
70-504
               

               
Cow position:
               
chr6:49428548-49428981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
429, 0
               

               
Conread position:
               
76-492
               

               
Cow position:
               
chr6:49428890-49429306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
235, 242
               

               
Conread position:
               
81-463
               

               
Cow position:
               
chr6:49428391-49428773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 26
               

               
Conread position:
               
81-465
               

               
Cow position:
               
chr6:49429063-49429447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
231, 236
               

               
Conread position:
               
100-465
               

               
Cow position:
               
chr6:49428830-49429195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
101-322
               

               
Cow position:
               
chr6:49429251-49429472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
50, 44
               

               
Conread position:
               
101-463
               

               
Cow position:
               
chr6:49428243-49428605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 211
               

               
Conread position:
               
101-464
               

               
Cow position:
               
chr6:49428327-49428690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 42
               

               
Conread position:
               
101-493
               

               
Cow position:
               
chr6:49428495-49428887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 109
               

               
Conread position:
               
107-465
               

               
Cow position:
               
chr6:49428753-49429111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
154-492
               

               
Cow position:
               
chr6:49428212-49428550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 151
               

               
Conread position:
               
52-465
               

               
Cow position:
               
chr7:12293401-12293811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
54-367
               

               
Cow position:
               
chr7:12293733-12294051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
88-465
               

               
Cow position:
               
chr7:12293266-12293643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
89-465
               

               
Cow position:
               
chr7:12293603-12293979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
95-459
               

               
Cow position:
               
chr7:12293526-12293889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
100-460
               

               
Cow position:
               
chr7:28846605-28846965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
295, 302
               

               
Conread position:
               
100-519
               

               
Cow position:
               
chr7:12293362-12293781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
406, 399
               

               
Conread position:
               
101-466
               

               
Cow position:
               
chr7:28846438-28846803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
274, 286
               

               
Conread position:
               
107-379
               

               
Cow position:
               
chr7:28846780-28847052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
51, 45
               

               
Conread position:
               
107-460
               

               
Cow position:
               
chr7:28846528-28846881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
110-467
               

               
Cow position:
               
chr7:28846699-28847056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
192, 185
               

               
Conread position:
               
179-459
               

               
Cow position:
               
chr7:28846432-28846712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
35, 30
               

               
Conread position:
               
70-464
               

               
Cow position:
               
chrX:14181406-14181012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 140
               

               
Conread position:
               
97-363
               

               
Cow position:
               
chrX:13826433-13826167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
100-493
               

               
Cow position:
               
chrX:14181544-14181151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
202, 198
               

               
Conread position:
               
101-367
               

               
Cow position:
               
chrX:14181207-14180941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
101-415
               

               
Cow position:
               
chrX:14181291-14180977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
101-502
               

               
Cow position:
               
chrX:13826765-13826367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
369, 0
               

               
Conread position:
               
108-460
               

               
Cow position:
               
chrX:13826926-13826574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
104, 94
               

               
Conread position:
               
148-433
               

               
Cow position:
               
chrX:13826802-13826517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
148, 159
               

               
Conread position:
               
148-462
               

               
Cow position:
               
chrX:14181412-14181098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 62
               

               
Conread position:
               
148-464
               

               
Cow position:
               
chrX:13826634-13826318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
70, 64
               

               
Conread position:
               
192-468
               

               
Cow position:
               
chrX:13826926-13826650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
101, 115