Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8021J08.3 |
| Conread position: | 153-540 |
| Cow position: | chr11:39481545-39481918 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 115, 41 |
| Conread position: | 169-539 |
| Cow position: | chr11:81553179-81552801 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 38 |
| Conread position: | 175-519 |
| Cow position: | chr11:42312238-42311894 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 13, 126 |
| Conread position: | 216-540 |
| Cow position: | chr11:49040802-49040469 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 239 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 120, 280 |
| Conread position: | 184-519 |
| Cow position: | chr13:14391767-14392111 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 208, 47 |
| Conread position: | 214-536 |
| Cow position: | chr14:11655607-11655278 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 40, 74 |
| Conread position: | 218-524 |
| Cow position: | chr14:48881028-48881346 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 152-540 |
| Cow position: | chr15:3565521-3565129 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 271 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 252, 56 |
| Conread position: | 154-540 |
| Cow position: | chr15:5104979-5104580 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 56, 137 |
| Conread position: | 171-380 |
| Cow position: | chr15:23964605-23964815 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 54, 47 |
| Conread position: | 180-461 |
| Cow position: | chr15:21951513-21951220 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 170, 9 |
| Conread position: | 183-528 |
| Cow position: | chr15:53797186-53796829 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 15 |
| Conread position: | 196-399 |
| Cow position: | chr15:28481482-28481280 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 197, 47 |
| Conread position: | 135-457 |
| Cow position: | chr16:51447845-51448169 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 88, 33 |
| Conread position: | 159-399 |
| Cow position: | chr16:48682733-48682493 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 179, 133 |
| Conread position: | 223-484 |
| Cow position: | chr16:5226615-5226884 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 6, 84 |
| Conread position: | 175-540 |
| Cow position: | chr17:18326035-18325659 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 116 |
| Conread position: | 234-539 |
| Cow position: | chr17:16418571-16418249 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 97, 270 |
| Conread position: | 29-540 |
| Cow position: | chr18:51236785-51237318 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 266 |
| Conread position: | 167-523 |
| Cow position: | chr19:10517680-10517314 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 263 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 121, 189 |
| Conread position: | 158-329 |
| Cow position: | chr20:28155799-28155970 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 270-540 |
| Cow position: | chr20:32043069-32043341 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 173, 122 |
| Conread position: | 169-520 |
| Cow position: | chr21:1691367-1691008 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 9, 88 |
| Conread position: | 184-495 |
| Cow position: | chr21:4714966-4715275 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 75, 47 |
| Conread position: | 151-371 |
| Cow position: | chr22:40368886-40369100 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 7, 57 |
| Conread position: | 184-409 |
| Cow position: | chr22:4233216-4232998 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 217, 69 |
| Conread position: | 158-452 |
| Cow position: | chr23:4867348-4867642 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 235, 52 |
| Conread position: | 244-534 |
| Cow position: | chr23:23842665-23842960 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 141, 35 |
| Conread position: | 29-490 |
| Cow position: | chr24:6418041-6417581 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 330 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 13, 66 |
| Conread position: | 157-539 |
| Cow position: | chr24:37322203-37321820 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 271 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 169, 50 |
| Conread position: | 167-510 |
| Cow position: | chr24:37201386-37201036 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 249 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 242, 22 |
| Conread position: | 291-465 |
| Cow position: | chr24:5456014-5455841 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 54, 29 |
| Conread position: | 142-398 |
| Cow position: | chr25:14484632-14484375 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 251, 145 |
| Conread position: | 184-404 |
| Cow position: | chr26:25009868-25009650 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 211, 147 |
| Conread position: | 209-540 |
| Cow position: | chr26:1409672-1410016 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 232 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 181, 50 |
| Conread position: | 151-522 |
| Cow position: | chr27:2667311-2667709 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 181-452 |
| Cow position: | chr27:20139349-20139079 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 203, 13 |
| Conread position: | 157-355 |
| Cow position: | chr28:28472646-28472839 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 191, 99 |
| Conread position: | 167-524 |
| Cow position: | chr28:581246-580892 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 244 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 164, 13 |
| Conread position: | 265-536 |
| Cow position: | chr28:11027456-11027186 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 178, 80 |
| Conread position: | 129-398 |
| Cow position: | chr29:32219990-32220264 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 29, 149 |
| Conread position: | 151-534 |
| Cow position: | chr29:6211602-6212001 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 256 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 7, 94 |
| Conread position: | 171-389 |
| Cow position: | chr29:32576901-32576687 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 174-524 |
| Cow position: | chr29:21457161-21457519 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 252 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 219, 42 |
| Conread position: | 151-409 |
| Cow position: | chr5:55097598-55097331 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 7, 49 |
| Conread position: | 151-464 |
| Cow position: | chr5:61280212-61279892 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 7, 29 |
| Conread position: | 153-480 |
| Cow position: | chr5:61222280-61222625 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 83, 224 |
| Conread position: | 153-540 |
| Cow position: | chr5:59864193-59863784 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 285 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 94, 80 |
| Conread position: | 175-536 |
| Cow position: | chr5:52998950-52999315 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 46, 54 |
| Conread position: | 241-459 |
| Cow position: | chr5:68489667-68489439 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 83 |
| Conread position: | 152-540 |
| Cow position: | chr6:52115524-52115922 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 266 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 6, 151 |
| Conread position: | 169-536 |
| Cow position: | chr7:21855134-21854765 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 57 |
| Conread position: | 178-533 |
| Cow position: | chr7:59874817-59875173 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 126 |
| Conread position: | 182-528 |
| Cow position: | chr7:18708709-18709045 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 261, 55 |
| Conread position: | 169-461 |
| Cow position: | chr8:21239778-21240081 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 94, 15 |
| Conread position: | 170-462 |
| Cow position: | chr8:37500880-37501172 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 56, 7 |
| Conread position: | 173-539 |
| Cow position: | chr8:45214540-45214898 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 236 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 145, 80 |
| Conread position: | 173-474 |
| Cow position: | chr9:7013498-7013807 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 220, 0 |
| Conread position: | 184-536 |
| Cow position: | chr9:48378173-48377807 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 209, 288 |
| Conread position: | 157-538 |
| Cow position: | chrX:15252856-15252463 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 267 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 137, 178 |
| Conread position: | 157-539 |
| Cow position: | chrX:3001164-3001541 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 262 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 334, 62 |
| Conread position: | 168-540 |
| Cow position: | chrX:27467433-27467043 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 169 |
| Conread position: | 169-524 |
| Cow position: | chrX:13085992-13085624 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 32, 53 |
| Conread position: | 172-539 |
| Cow position: | chrX:354759-354395 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 65 |
| Conread position: | 182-539 |
| Cow position: | chrX:33704376-33704740 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 216, 36 |
| Conread position: | 192-536 |
| Cow position: | chrX:34343709-34344053 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 201, 98 |
| Conread position: | 194-435 |
| Cow position: | chrX:25565480-25565236 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 199, 57 |