Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-Pig3-SRG8022E11.3
        

               Conread position:
               106-682
               

               Cow position:
               chr1:76780513-76779925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               607
               

               Alignm identity:
               383
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 130
               

               Conread position:
               152-501
               

               Cow position:
               chr1:63133604-63133971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               264
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               8, 88
               

               Conread position:
               157-406
               

               Cow position:
               chr1:23624156-23624402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               53, 79
               

               Conread position:
               157-758
               

               Cow position:
               chr1:85409875-85409279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               615
               

               Alignm identity:
               445
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 79
               

               Conread position:
               158-346
               

               Cow position:
               chr1:86364886-86365074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               91, 51
               

               Conread position:
               158-376
               

               Cow position:
               chr1:71331541-71331332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               150
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               158-378
               

               Cow position:
               chr1:70065799-70066018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               55, 47
               

               Conread position:
               158-379
               

               Cow position:
               chr1:57646667-57646883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               159
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               55, 34
               

               Conread position:
               158-379
               

               Cow position:
               chr1:82406555-82406333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               154
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               90, 78
               

               Conread position:
               158-380
               

               Cow position:
               chr1:40161208-40161434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               42, 79
               

               Conread position:
               158-390
               

               Cow position:
               chr1:86325611-86325378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               55, 72
               

               Conread position:
               158-398
               

               Cow position:
               chr1:45572879-45572636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               52, 73
               

               Conread position:
               158-418
               

               Cow position:
               chr1:40223042-40222787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               47, 78
               

               Conread position:
               158-418
               

               Cow position:
               chr1:81371693-81371437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               143, 34
               

               Conread position:
               158-419
               

               Cow position:
               chr1:19440023-19439768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 29
               

               Conread position:
               158-497
               

               Cow position:
               chr1:52206674-52207019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 72
               

               Conread position:
               158-590
               

               Cow position:
               chr1:30041732-30042146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 12
               

               Conread position:
               158-655
               

               Cow position:
               chr1:87914966-87914470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               526
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 29
               

               Conread position:
               158-677
               

               Cow position:
               chr1:40164234-40164739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               531
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 62
               

               Conread position:
               158-691
               

               Cow position:
               chr1:92551150-92550593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               569
               

               Alignm identity:
               416
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 71
               

               Conread position:
               158-708
               

               Cow position:
               chr1:74713453-74713993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               563
               

               Alignm identity:
               422
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 77
               

               Conread position:
               158-744
               

               Cow position:
               chr1:64479980-64479391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               607
               

               Alignm identity:
               432
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 78
               

               Conread position:
               158-766
               

               Cow position:
               chr1:18223874-18223281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               616
               

               Alignm identity:
               429
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 78
               

               Conread position:
               159-377
               

               Cow position:
               chr1:84152494-84152714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               149
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               52, 77
               

               Conread position:
               159-379
               

               Cow position:
               chr1:42174593-42174371 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               50, 71
               

               Conread position:
               159-390
               

               Cow position:
               chr1:54162809-54162575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               169
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               51, 77
               

               Conread position:
               159-641
               

               Cow position:
               chr1:22516540-22516996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 71
               

               Conread position:
               159-767
               

               Cow position:
               chr1:22495541-22496143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               633
               

               Alignm identity:
               419
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 54
               

               Conread position:
               160-379
               

               Cow position:
               chr1:52819294-52819511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               158
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               49, 76
               

               Conread position:
               160-767
               

               Cow position:
               chr1:64099281-64098684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               625
               

               Alignm identity:
               464
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 76
               

               Conread position:
               161-472
               

               Cow position:
               chr1:71938511-71938200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               202
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               52, 75
               

               Conread position:
               162-377
               

               Cow position:
               chr1:1825780-1825993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               51, 74
               

               Conread position:
               166-766
               

               Cow position:
               chr1:39244576-39243952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               629
               

               Alignm identity:
               448
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 70
               

               Conread position:
               167-767
               

               Cow position:
               chr1:34892562-34893170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               631
               

               Alignm identity:
               429
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 69
               

               Conread position:
               168-633
               

               Cow position:
               chr1:102556595-102557047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               312
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               10, 43
               

               Conread position:
               170-733
               

               Cow position:
               chr1:49727884-49728446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               582
               

               Alignm identity:
               419
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 41
               

               Conread position:
               174-509
               

               Cow position:
               chr1:11879157-11878821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               248
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               36, 62
               

               Conread position:
               175-355
               

               Cow position:
               chr1:61241759-61241938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               34, 61
               

               Conread position:
               193-390
               

               Cow position:
               chr1:86614888-86615085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               18, 13
               

               Conread position:
               194-401
               

               Cow position:
               chr1:72181835-72182040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               19, 42
               

               Conread position:
               210-499
               

               Cow position:
               chr1:69061284-69061570 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               8, 26
               

               Conread position:
               212-446
               

               Cow position:
               chr1:22070307-22070541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               40, 23
               

               Conread position:
               232-764
               

               Cow position:
               chr1:40420387-40419867 (view UCSC Genome Browser custom track)
               

               Alignm length:
               550
               

               Alignm identity:
               385
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 79
               

               Conread position:
               242-497
               

               Cow position:
               chr1:77755879-77755625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               163, 5
               

               Conread position:
               255-485
               

               Cow position:
               chr1:45977997-45978235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               165
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               259-771
               

               Cow position:
               chr1:37432454-37432982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               541
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 52
               

               Conread position:
               275-765
               

               Cow position:
               chr1:82573141-82572650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               504
               

               Alignm identity:
               386
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 261
               

               Conread position:
               290-748
               

               Cow position:
               chr1:71555676-71555222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               214, 65
               

               Conread position:
               294-754
               

               Cow position:
               chr1:31233222-31232770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 155
               

               Conread position:
               295-766
               

               Cow position:
               chr1:85351-85830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               492
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 57
               

               Conread position:
               340-765
               

               Cow position:
               chr1:69290290-69290733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               310
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               18, 31
               

               Conread position:
               350-779
               

               Cow position:
               chr1:25885925-25885494 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 88
               

               Conread position:
               360-766
               

               Cow position:
               chr1:14560344-14559957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 44
               

               Conread position:
               365-767
               

               Cow position:
               chr1:3750095-3750491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 88
               

               Conread position:
               367-766
               

               Cow position:
               chr1:79915408-79915800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               269
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               21, 7
               

               Conread position:
               378-615
               

               Cow position:
               chr1:23887166-23887401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               42, 115
               

               Conread position:
               378-672
               

               Cow position:
               chr1:56858427-56858735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               214
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               42, 9
               

               Conread position:
               378-771
               

               Cow position:
               chr1:6985637-6985249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               278
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               42, 104
               

               Conread position:
               379-741
               

               Cow position:
               chr1:41092974-41092599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               268
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               41, 172
               

               Conread position:
               380-767
               

               Cow position:
               chr1:28512441-28512060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               274
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               29, 164
               

               Conread position:
               383-527
               

               Cow position:
               chr1:80329832-80329681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               117
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               403-771
               

               Cow position:
               chr1:61241949-61242319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 128
               

               Conread position:
               411-769
               

               Cow position:
               chr1:101883859-101884208 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 11
               

               Conread position:
               415-654
               

               Cow position:
               chr1:69204025-69203791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               172
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               84, 124
               

               Conread position:
               418-766
               

               Cow position:
               chr1:37432259-37432592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               232
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               172, 18
               

               Conread position:
               422-749
               

               Cow position:
               chr1:46268791-46268464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               244
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               55, 16
               

               Conread position:
               427-758
               

               Cow position:
               chr1:65155523-65155188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 114
               

               Conread position:
               431-766
               

               Cow position:
               chr1:47371220-47371535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               239
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               67, 107
               

               Conread position:
               431-774
               

               Cow position:
               chr1:28408255-28407916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               248
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               14, 8
               

               Conread position:
               436-766
               

               Cow position:
               chr1:81371199-81370882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               235
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               68, 31
               

               Conread position:
               440-766
               

               Cow position:
               chr1:88017558-88017236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 7
               

               Conread position:
               447-603
               

               Cow position:
               chr1:61790796-61790632 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               124
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               447-766
               

               Cow position:
               chr1:81292758-81293069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               236
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               57, 19
               

               Conread position:
               455-641
               

               Cow position:
               chr1:19439511-19439324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               147
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               51, 85
               

               Conread position:
               460-750
               

               Cow position:
               chr1:8725524-8725808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               165, 71
               

               Conread position:
               461-766
               

               Cow position:
               chr1:9511984-9511695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 77
               

               Conread position:
               473-764
               

               Cow position:
               chr1:93832289-93832570 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               202
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               29, 65
               

               Conread position:
               481-766
               

               Cow position:
               chr1:11831632-11831903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               214
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               111, 34
               

               Conread position:
               488-758
               

               Cow position:
               chr1:82387248-82387513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               14, 40
               

               Conread position:
               488-764
               

               Cow position:
               chr1:52207310-52207581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 50
               

               Conread position:
               489-730
               

               Cow position:
               chr1:8726397-8726147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               10, 81
               

               Conread position:
               492-765
               

               Cow position:
               chr1:45978978-45979236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 49
               

               Conread position:
               494-731
               

               Cow position:
               chr1:57757518-57757744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               187
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               7, 44
               

               Conread position:
               497-756
               

               Cow position:
               chr1:77755393-77755126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               97, 40
               

               Conread position:
               499-766
               

               Cow position:
               chr1:62041712-62041964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               203
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               6, 39
               

               Conread position:
               501-659
               

               Cow position:
               chr1:30518453-30518614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               83, 30
               

               Conread position:
               502-730
               

               Cow position:
               chr1:22071981-22072204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               178
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               94, 29
               

               Conread position:
               504-771
               

               Cow position:
               chr1:64745415-64745150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               199
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               14, 34
               

               Conread position:
               506-758
               

               Cow position:
               chr1:101967019-101966770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               86, 31
               

               Conread position:
               509-739
               

               Cow position:
               chr1:37739449-37739226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               179
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               83, 28
               

               Conread position:
               535-758
               

               Cow position:
               chr1:96297073-96296864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               536-718
               

               Cow position:
               chr1:100132235-100132428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               149
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               60, 56
               

               Conread position:
               536-754
               

               Cow position:
               chr1:23510425-23510211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               176
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               39, 34
               

               Conread position:
               536-766
               

               Cow position:
               chr1:63134287-63134509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               177
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               51, 31
               

               Conread position:
               536-780
               

               Cow position:
               chr1:39251339-39251600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               58, 162
               

               Conread position:
               538-757
               

               Cow position:
               chr1:6866048-6865824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               53, 201
               

               Conread position:
               543-758
               

               Cow position:
               chr1:79349264-79349048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               169
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               69, 98
               

               Conread position:
               556-767
               

               Cow position:
               chr1:31951740-31951953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               57, 13
               

               Conread position:
               557-768
               

               Cow position:
               chr1:100388076-100387862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               27, 181
               

               Conread position:
               565-732
               

               Cow position:
               chr1:68332809-68332635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               566-758
               

               Cow position:
               chr1:80329564-80329370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               154
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               23, 150
               

               Conread position:
               568-732
               

               Cow position:
               chr1:20135688-20135855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               128
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               39, 54
               

               Conread position:
               568-756
               

               Cow position:
               chr1:40435006-40434829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               137
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               571-749
               

               Cow position:
               chr1:54365221-54365037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               21, 169
               

               Conread position:
               571-767
               

               Cow position:
               chr1:3746498-3746697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               21, 101
               

               Conread position:
               573-758
               

               Cow position:
               chr1:27546181-27546365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               138
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               19, 35
               

               Conread position:
               575-766
               

               Cow position:
               chr1:11878785-11878589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               158
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               21, 17
               

               Conread position:
               606-758
               

               Cow position:
               chr1:54217416-54217263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               114
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               14, 75
               

               Conread position:
               606-766
               

               Cow position:
               chr1:72117344-72117197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               123
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               609-761
               

               Cow position:
               chr1:96049741-96049891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               113
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               610-704
               

               Cow position:
               chr1:78752566-78752472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               95
               

               Alignm identity:
               80
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               610-714
               

               Cow position:
               chr1:71086170-71086273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               105
               

               Alignm identity:
               88
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               610-765
               

               Cow position:
               chr1:59911022-59911175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               126
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               123, 0
               

               Conread position:
               610-766
               

               Cow position:
               chr1:71272468-71272612 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               614-766
               

               Cow position:
               chr1:78885414-78885265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               27, 46
               

               Conread position:
               616-727
               

               Cow position:
               chr1:69062426-69062537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               112
               

               Alignm identity:
               93
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               619-766
               

               Cow position:
               chr1:2203906-2203760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               114
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               114, 0
               

               Conread position:
               625-778
               

               Cow position:
               chr1:34311330-34311480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               116
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               626-768
               

               Cow position:
               chr1:90370305-90370164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               109
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               107, 0
               

               Conread position:
               627-766
               

               Cow position:
               chr1:53568093-53568231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               117
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               106, 0
               

               Conread position:
               631-765
               

               Cow position:
               chr1:87910738-87910869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               105
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               631-766
               

               Cow position:
               chr1:19439036-19438896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               108
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               54, 108
               

               Conread position:
               645-766
               

               Cow position:
               chr1:23625302-23625423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               123
               

               Alignm identity:
               97
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               113, 88
               

               Conread position:
               655-766
               

               Cow position:
               chr1:71111839-71111727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               114
               

               Alignm identity:
               93
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               32, 79
               

               Conread position:
               118-758
               

               Cow position:
               chr10:3317787-3318444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               673
               

               Alignm identity:
               476
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 44
               

               Conread position:
               155-354
               

               Cow position:
               chr10:55287722-55287925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               140
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               5, 82
               

               Conread position:
               156-379
               

               Cow position:
               chr10:51779070-51778849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               152
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               102, 50
               

               Conread position:
               157-765
               

               Cow position:
               chr10:22860192-22859599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               628
               

               Alignm identity:
               423
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 19
               

               Conread position:
               158-365
               

               Cow position:
               chr10:24077678-24077473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               89, 77
               

               Conread position:
               158-402
               

               Cow position:
               chr10:31219960-31220208 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               183
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               13, 73
               

               Conread position:
               158-417
               

               Cow position:
               chr10:15618808-15618543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 78
               

               Conread position:
               158-418
               

               Cow position:
               chr10:12875847-12875592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               194
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               54, 79
               

               Conread position:
               158-510
               

               Cow position:
               chr10:28566284-28565917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 76
               

               Conread position:
               158-602
               

               Cow position:
               chr10:36303885-36303404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               489
               

               Alignm identity:
               335
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               60, 100
               

               Conread position:
               158-694
               

               Cow position:
               chr10:48193716-48193195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               555
               

               Alignm identity:
               390
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 72
               

               Conread position:
               158-754
               

               Cow position:
               chr10:16669402-16668783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               633
               

               Alignm identity:
               448
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 55
               

               Conread position:
               158-765
               

               Cow position:
               chr10:11275614-11276236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               640
               

               Alignm identity:
               470
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 78
               

               Conread position:
               158-769
               

               Cow position:
               chr10:22455159-22455761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               621
               

               Alignm identity:
               449
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 43
               

               Conread position:
               159-418
               

               Cow position:
               chr10:41637614-41637871 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               185
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               53, 74
               

               Conread position:
               159-766
               

               Cow position:
               chr10:68204130-68203518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               631
               

               Alignm identity:
               448
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 95
               

               Conread position:
               161-359
               

               Cow position:
               chr10:22843653-22843853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               51, 75
               

               Conread position:
               163-378
               

               Cow position:
               chr10:48313104-48312888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               48, 116
               

               Conread position:
               166-766
               

               Cow position:
               chr10:43061139-43060524 (view UCSC Genome Browser custom track)
               

               Alignm length:
               632
               

               Alignm identity:
               457
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               167-433
               

               Cow position:
               chr10:4994592-4994318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               193
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               43, 69
               

               Conread position:
               173-467
               

               Cow position:
               chr10:45650653-45650934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               207
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               37, 50
               

               Conread position:
               177-528
               

               Cow position:
               chr10:1351915-1352279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 59
               

               Conread position:
               180-767
               

               Cow position:
               chr10:37428690-37428113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               612
               

               Alignm identity:
               442
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 10
               

               Conread position:
               183-766
               

               Cow position:
               chr10:767788-767220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               597
               

               Alignm identity:
               419
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 106
               

               Conread position:
               253-680
               

               Cow position:
               chr10:38472257-38472683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 249
               

               Conread position:
               266-595
               

               Cow position:
               chr10:25257703-25258012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               232
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               75, 15
               

               Conread position:
               276-558
               

               Cow position:
               chr10:48208707-48208426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               209
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               43, 108
               

               Conread position:
               283-767
               

               Cow position:
               chr10:23880070-23879586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               498
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 73
               

               Conread position:
               287-682
               

               Cow position:
               chr10:68979639-68980015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               283
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               116, 74
               

               Conread position:
               293-533
               

               Cow position:
               chr10:60243062-60243311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               179
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               296-766
               

               Cow position:
               chr10:12199107-12199590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               496
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 96
               

               Conread position:
               316-767
               

               Cow position:
               chr10:53375156-53374733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 13
               

               Conread position:
               324-640
               

               Cow position:
               chr10:27222896-27223220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 221
               

               Conread position:
               340-766
               

               Cow position:
               chr10:47583845-47584257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               289
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               17, 39
               

               Conread position:
               376-699
               

               Cow position:
               chr10:17415706-17415386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               235
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               30, 95
               

               Conread position:
               379-772
               

               Cow position:
               chr10:50141336-50140942 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               273
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               19, 7
               

               Conread position:
               394-756
               

               Cow position:
               chr10:18863066-18863431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               263
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               26, 45
               

               Conread position:
               400-768
               

               Cow position:
               chr10:3854952-3855298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               258
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               190, 21
               

               Conread position:
               418-717
               

               Cow position:
               chr10:15824302-15824005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               236
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               69, 11
               

               Conread position:
               424-757
               

               Cow position:
               chr10:1328248-1327935 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               238
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               76, 98
               

               Conread position:
               433-766
               

               Cow position:
               chr10:19128559-19128221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 9
               

               Conread position:
               439-774
               

               Cow position:
               chr10:17745368-17745685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               241
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               64, 25
               

               Conread position:
               460-633
               

               Cow position:
               chr10:9464467-9464638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               133
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               141, 80
               

               Conread position:
               460-749
               

               Cow position:
               chr10:15618168-15617893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               219
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               35, 11
               

               Conread position:
               460-771
               

               Cow position:
               chr10:35181960-35182265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 27
               

               Conread position:
               461-582
               

               Cow position:
               chr10:62629288-62629404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               122
               

               Alignm identity:
               101
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               466-748
               

               Cow position:
               chr10:17513598-17513337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               204
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               37, 72
               

               Conread position:
               474-766
               

               Cow position:
               chr10:24609062-24609359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 65
               

               Conread position:
               482-766
               

               Cow position:
               chr10:52131858-52132136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               224
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               20, 34
               

               Conread position:
               483-766
               

               Cow position:
               chr10:37665296-37665016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 12
               

               Conread position:
               484-766
               

               Cow position:
               chr10:41638081-41638364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               213
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               21, 29
               

               Conread position:
               487-684
               

               Cow position:
               chr10:37092793-37092594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               105, 47
               

               Conread position:
               496-687
               

               Cow position:
               chr10:23589831-23589643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               150
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               42, 15
               

               Conread position:
               496-766
               

               Cow position:
               chr10:67051197-67051459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               203
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               117, 19
               

               Conread position:
               497-766
               

               Cow position:
               chr10:57404366-57404115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               202
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               99, 39
               

               Conread position:
               500-774
               

               Cow position:
               chr10:5422073-5421797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 37
               

               Conread position:
               505-754
               

               Cow position:
               chr10:63621558-63621313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               196
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               87, 39
               

               Conread position:
               525-714
               

               Cow position:
               chr10:28565801-28565616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               534-753
               

               Cow position:
               chr10:60243956-60244174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               180
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 32
               

               Conread position:
               536-725
               

               Cow position:
               chr10:54342966-54342770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               157
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               56, 46
               

               Conread position:
               536-739
               

               Cow position:
               chr10:31220502-31220708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               56, 26
               

               Conread position:
               536-756
               

               Cow position:
               chr10:21477314-21477538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               80, 56
               

               Conread position:
               536-769
               

               Cow position:
               chr10:45195707-45195940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               176
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               79, 8
               

               Conread position:
               538-754
               

               Cow position:
               chr10:21563327-21563560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               166
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               54, 215
               

               Conread position:
               547-725
               

               Cow position:
               chr10:4994081-4993900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               137
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               46, 157
               

               Conread position:
               547-766
               

               Cow position:
               chr10:48208302-48208087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               559-730
               

               Cow position:
               chr10:49280156-49279976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               569-755
               

               Cow position:
               chr10:4013657-4013841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               143
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               23, 145
               

               Conread position:
               569-755
               

               Cow position:
               chr10:62629705-62629889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               148
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               42, 22
               

               Conread position:
               573-766
               

               Cow position:
               chr10:25536403-25536606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               159
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               19, 171
               

               Conread position:
               583-766
               

               Cow position:
               chr10:25008818-25008635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               33, 8
               

               Conread position:
               583-766
               

               Cow position:
               chr10:30320800-30320982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               9, 59
               

               Conread position:
               601-766
               

               Cow position:
               chr10:33995588-33995424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               126
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               74, 7
               

               Conread position:
               604-758
               

               Cow position:
               chr10:30708728-30708576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               126
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               87, 127
               

               Conread position:
               610-766
               

               Cow position:
               chr10:55874162-55874314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               150, 48
               

               Conread position:
               610-769
               

               Cow position:
               chr10:4605533-4605376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               116
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               119, 29
               

               Conread position:
               610-769
               

               Cow position:
               chr10:55437604-55437453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               124
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               32, 100
               

               Conread position:
               621-755
               

               Cow position:
               chr10:30358051-30357918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               104
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               112, 0
               

               Conread position:
               631-766
               

               Cow position:
               chr10:46010276-46010142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               114
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               102, 0
               

               Conread position:
               648-766
               

               Cow position:
               chr10:45651179-45651296 (view UCSC Genome Browser custom track)
               

               Alignm length:
               119
               

               Alignm identity:
               94
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               659-757
               

               Cow position:
               chr10:27224191-27224288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               99
               

               Alignm identity:
               88
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               155-718
               

               Cow position:
               chr11:35252028-35251461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               583
               

               Alignm identity:
               423
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 82
               

               Conread position:
               157-379
               

               Cow position:
               chr11:17192309-17192087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               56, 40
               

               Conread position:
               157-652
               

               Cow position:
               chr11:52859425-52859924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               514
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 79
               

               Conread position:
               158-374
               

               Cow position:
               chr11:58313210-58313424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               56, 76
               

               Conread position:
               158-377
               

               Cow position:
               chr11:43435104-43435325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               157
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               55, 78
               

               Conread position:
               158-476
               

               Cow position:
               chr11:1775068-1774739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               229
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               56, 76
               

               Conread position:
               158-699
               

               Cow position:
               chr11:57061844-57062377 (view UCSC Genome Browser custom track)
               

               Alignm length:
               555
               

               Alignm identity:
               398
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 77
               

               Conread position:
               158-748
               

               Cow position:
               chr11:12790771-12791327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               594
               

               Alignm identity:
               430
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 78
               

               Conread position:
               158-758
               

               Cow position:
               chr11:5221462-5220863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               617
               

               Alignm identity:
               450
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 18
               

               Conread position:
               158-766
               

               Cow position:
               chr11:55119452-55120049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               622
               

               Alignm identity:
               462
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 79
               

               Conread position:
               158-769
               

               Cow position:
               chr11:24008049-24008678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               649
               

               Alignm identity:
               451
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 72
               

               Conread position:
               159-329
               

               Cow position:
               chr11:59473368-59473536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               124
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               76, 43
               

               Conread position:
               159-379
               

               Cow position:
               chr11:23738816-23738595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               90, 53
               

               Conread position:
               159-417
               

               Cow position:
               chr11:21121227-21121474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               51, 77
               

               Conread position:
               159-572
               

               Cow position:
               chr11:9423883-9424300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 50
               

               Conread position:
               159-589
               

               Cow position:
               chr11:51177461-51177879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 78
               

               Conread position:
               159-765
               

               Cow position:
               chr11:25807788-25807155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               645
               

               Alignm identity:
               475
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 14
               

               Conread position:
               160-757
               

               Cow position:
               chr11:39831252-39830665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               613
               

               Alignm identity:
               437
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 65
               

               Conread position:
               160-766
               

               Cow position:
               chr11:43831824-43831234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               630
               

               Alignm identity:
               437
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 77
               

               Conread position:
               167-725
               

               Cow position:
               chr11:77756783-77756214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               585
               

               Alignm identity:
               409
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 69
               

               Conread position:
               167-766
               

               Cow position:
               chr11:18154274-18153671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               622
               

               Alignm identity:
               458
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 38
               

               Conread position:
               168-755
               

               Cow position:
               chr11:69491397-69491980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               600
               

               Alignm identity:
               434
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 68
               

               Conread position:
               168-766
               

               Cow position:
               chr11:77772708-77772119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               608
               

               Alignm identity:
               426
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 66
               

               Conread position:
               169-369
               

               Cow position:
               chr11:33103674-33103472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               147
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               40, 67
               

               Conread position:
               169-721
               

               Cow position:
               chr11:40574783-40574235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               577
               

               Alignm identity:
               422
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 64
               

               Conread position:
               170-346
               

               Cow position:
               chr11:60512747-60512909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               177-779
               

               Cow position:
               chr11:25972925-25972351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               608
               

               Alignm identity:
               440
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 59
               

               Conread position:
               179-725
               

               Cow position:
               chr11:10877243-10877793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               568
               

               Alignm identity:
               410
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               206, 6
               

               Conread position:
               194-662
               

               Cow position:
               chr11:25856191-25856669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 42
               

               Conread position:
               209-434
               

               Cow position:
               chr11:7130964-7131191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               176, 24
               

               Conread position:
               229-498
               

               Cow position:
               chr11:60822692-60822414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               23, 56
               

               Conread position:
               255-758
               

               Cow position:
               chr11:82528939-82529450 (view UCSC Genome Browser custom track)
               

               Alignm length:
               532
               

               Alignm identity:
               388
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 98
               

               Conread position:
               256-409
               

               Cow position:
               chr11:56962588-56962428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               122
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               128, 0
               

               Conread position:
               257-614
               

               Cow position:
               chr11:21893402-21893058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 9
               

               Conread position:
               259-766
               

               Cow position:
               chr11:22851104-22851620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               528
               

               Alignm identity:
               393
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 284
               

               Conread position:
               263-538
               

               Cow position:
               chr11:34024634-34024926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               215
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               118, 52
               

               Conread position:
               265-726
               

               Cow position:
               chr11:57153588-57153117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               155, 231
               

               Conread position:
               276-766
               

               Cow position:
               chr11:77763417-77762940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               508
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 53
               

               Conread position:
               277-751
               

               Cow position:
               chr11:34303550-34304030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 272
               

               Conread position:
               277-755
               

               Cow position:
               chr11:34761628-34761159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               166, 106
               

               Conread position:
               277-766
               

               Cow position:
               chr11:57753302-57752796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               515
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 9
               

               Conread position:
               292-418
               

               Cow position:
               chr11:74171598-74171476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               127
               

               Alignm identity:
               100
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               292-686
               

               Cow position:
               chr11:77820165-77819782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 37
               

               Conread position:
               344-756
               

               Cow position:
               chr11:27817348-27816948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               279
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               118, 39
               

               Conread position:
               347-758
               

               Cow position:
               chr11:34397638-34398053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 35
               

               Conread position:
               363-780
               

               Cow position:
               chr11:18452968-18452558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 20
               

               Conread position:
               373-742
               

               Cow position:
               chr11:58793815-58793449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               267
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               76, 66
               

               Conread position:
               378-732
               

               Cow position:
               chr11:11109907-11109554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               243
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               124, 20
               

               Conread position:
               380-748
               

               Cow position:
               chr11:8087963-8087595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 95
               

               Conread position:
               395-756
               

               Cow position:
               chr11:17737522-17737887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               250
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               25, 142
               

               Conread position:
               405-749
               

               Cow position:
               chr11:15885518-15885862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 135
               

               Conread position:
               408-767
               

               Cow position:
               chr11:74171387-74171035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 131
               

               Conread position:
               418-766
               

               Cow position:
               chr11:29785340-29785690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 10
               

               Conread position:
               424-690
               

               Cow position:
               chr11:80269602-80269346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               202
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               37, 51
               

               Conread position:
               439-667
               

               Cow position:
               chr11:12141003-12141218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               166
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               170, 48
               

               Conread position:
               447-690
               

               Cow position:
               chr11:84729204-84729444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               145, 48
               

               Conread position:
               447-704
               

               Cow position:
               chr11:879345-879087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               80, 106
               

               Conread position:
               447-766
               

               Cow position:
               chr11:12064973-12065272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               245
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               56, 94
               

               Conread position:
               447-771
               

               Cow position:
               chr11:80002993-80003301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               219
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               50, 87
               

               Conread position:
               456-698
               

               Cow position:
               chr11:60511806-60511560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               133, 81
               

               Conread position:
               460-765
               

               Cow position:
               chr11:9144653-9144372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               216
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               39, 68
               

               Conread position:
               460-771
               

               Cow position:
               chr11:1774617-1774299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 82
               

               Conread position:
               461-767
               

               Cow position:
               chr11:25379578-25379288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               217
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               38, 52
               

               Conread position:
               464-730
               

               Cow position:
               chr11:70605660-70605925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 74
               

               Conread position:
               467-730
               

               Cow position:
               chr11:77713373-77713114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               193
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               35, 64
               

               Conread position:
               479-766
               

               Cow position:
               chr11:44064176-44064467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 52
               

               Conread position:
               487-731
               

               Cow position:
               chr11:77477952-77477728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               191
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               16, 51
               

               Conread position:
               487-731
               

               Cow position:
               chr11:77478626-77478402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               191
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               16, 51
               

               Conread position:
               492-766
               

               Cow position:
               chr11:21909841-21909552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 84
               

               Conread position:
               495-757
               

               Cow position:
               chr11:43855919-43855660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               206
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               7, 43
               

               Conread position:
               500-765
               

               Cow position:
               chr11:19567357-19567609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               213
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               91, 37
               

               Conread position:
               500-766
               

               Cow position:
               chr11:35284419-35284670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               202
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               92, 30
               

               Conread position:
               501-766
               

               Cow position:
               chr11:55283211-55282933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               211
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               89, 36
               

               Conread position:
               522-766
               

               Cow position:
               chr11:87168438-87168205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               182
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               88, 59
               

               Conread position:
               526-706
               

               Cow position:
               chr11:46107890-46107718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               63, 76
               

               Conread position:
               536-767
               

               Cow position:
               chr11:17054094-17053862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               62, 19
               

               Conread position:
               537-766
               

               Cow position:
               chr11:64101395-64101632 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 193
               

               Conread position:
               538-766
               

               Cow position:
               chr11:54204473-54204247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 8
               

               Conread position:
               547-680
               

               Cow position:
               chr11:47347002-47347136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               111
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               43, 63
               

               Conread position:
               549-764
               

               Cow position:
               chr11:38114083-38113872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               164
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               41, 96
               

               Conread position:
               550-751
               

               Cow position:
               chr11:34265790-34265990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               39, 78
               

               Conread position:
               550-766
               

               Cow position:
               chr11:30660648-30660873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               167
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               44, 191
               

               Conread position:
               551-766
               

               Cow position:
               chr11:37763825-37764031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               41, 61
               

               Conread position:
               551-766
               

               Cow position:
               chr11:65777398-65777187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               161
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               43, 70
               

               Conread position:
               555-730
               

               Cow position:
               chr11:27610795-27610976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               38, 136
               

               Conread position:
               555-766
               

               Cow position:
               chr11:38009642-38009437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               42, 22
               

               Conread position:
               557-768
               

               Cow position:
               chr11:53663503-53663707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               35, 59
               

               Conread position:
               566-717
               

               Cow position:
               chr11:9192758-9192606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               112
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               142, 0
               

               Conread position:
               575-721
               

               Cow position:
               chr11:15106418-15106264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               589-764
               

               Cow position:
               chr11:54485423-54485589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               133
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               111, 16
               

               Conread position:
               601-758
               

               Cow position:
               chr11:3261129-3261281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               12, 32
               

               Conread position:
               608-753
               

               Cow position:
               chr11:462694-462838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               111
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               608-764
               

               Cow position:
               chr11:9424413-9424564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               118
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               608-766
               

               Cow position:
               chr11:85005858-85006011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               122
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               610-766
               

               Cow position:
               chr11:15374213-15374360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               150, 30
               

               Conread position:
               610-766
               

               Cow position:
               chr11:16363966-16363811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               137
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               76, 52
               

               Conread position:
               610-766
               

               Cow position:
               chr11:34024967-34025113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               613-766
               

               Cow position:
               chr11:80780553-80780704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               617-766
               

               Cow position:
               chr11:20998570-20998725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               123
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               75, 123
               

               Conread position:
               621-764
               

               Cow position:
               chr11:53331219-53331363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               119
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               90, 113
               

               Conread position:
               635-766
               

               Cow position:
               chr11:73007317-73007447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               101
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               98, 0
               

               Conread position:
               157-411
               

               Cow position:
               chr12:32221614-32221870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               165
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               54, 79
               

               Conread position:
               157-734
               

               Cow position:
               chr12:27423209-27423786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               596
               

               Alignm identity:
               412
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 56
               

               Conread position:
               158-379
               

               Cow position:
               chr12:37510690-37510472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               158-381
               

               Cow position:
               chr12:11306639-11306424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               53, 89
               

               Conread position:
               158-510
               

               Cow position:
               chr12:29760690-29760337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 78
               

               Conread position:
               158-590
               

               Cow position:
               chr12:21066149-21066579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 19
               

               Conread position:
               158-764
               

               Cow position:
               chr12:1993631-1993001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               645
               

               Alignm identity:
               440
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 54
               

               Conread position:
               158-766
               

               Cow position:
               chr12:10162013-10161388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               635
               

               Alignm identity:
               482
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 78
               

               Conread position:
               158-766
               

               Cow position:
               chr12:16961554-16962158 (view UCSC Genome Browser custom track)
               

               Alignm length:
               624
               

               Alignm identity:
               440
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               242, 74
               

               Conread position:
               158-769
               

               Cow position:
               chr12:33277861-33278462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               634
               

               Alignm identity:
               450
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 59
               

               Conread position:
               159-390
               

               Cow position:
               chr12:22473919-22474148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               176
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               53, 77
               

               Conread position:
               159-491
               

               Cow position:
               chr12:23498093-23498422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               237
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               227, 13
               

               Conread position:
               159-557
               

               Cow position:
               chr12:23892480-23892873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 58
               

               Conread position:
               159-757
               

               Cow position:
               chr12:26311135-26310555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               609
               

               Alignm identity:
               430
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 66
               

               Conread position:
               161-392
               

               Cow position:
               chr12:12982921-12982680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               50, 97
               

               Conread position:
               209-495
               

               Cow position:
               chr12:25513883-25514169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               201
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               43, 23
               

               Conread position:
               217-766
               

               Cow position:
               chr12:2838237-2837702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               562
               

               Alignm identity:
               396
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 16
               

               Conread position:
               289-766
               

               Cow position:
               chr12:8468105-8467634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 52
               

               Conread position:
               291-726
               

               Cow position:
               chr12:36975350-36974909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 260
               

               Conread position:
               307-716
               

               Cow position:
               chr12:7025355-7024934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 76
               

               Conread position:
               323-735
               

               Cow position:
               chr12:18442786-18443185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 32
               

               Conread position:
               388-766
               

               Cow position:
               chr12:33277433-33277059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 77
               

               Conread position:
               392-767
               

               Cow position:
               chr12:8767450-8767068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 150
               

               Conread position:
               401-762
               

               Cow position:
               chr12:28214288-28214647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 52
               

               Conread position:
               422-764
               

               Cow position:
               chr12:11306422-11306081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 16
               

               Conread position:
               431-769
               

               Cow position:
               chr12:20227155-20226819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               178, 90
               

               Conread position:
               439-757
               

               Cow position:
               chr12:7936838-7936533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 44
               

               Conread position:
               460-732
               

               Cow position:
               chr12:7086360-7086626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 74
               

               Conread position:
               461-758
               

               Cow position:
               chr12:38223295-38222989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               225
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               37, 75
               

               Conread position:
               461-766
               

               Cow position:
               chr12:5896818-5896509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               155, 26
               

               Conread position:
               473-751
               

               Cow position:
               chr12:27718093-27718359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               29, 60
               

               Conread position:
               496-756
               

               Cow position:
               chr12:23499105-23499365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               8, 43
               

               Conread position:
               499-702
               

               Cow position:
               chr12:12763917-12763715 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               117, 45
               

               Conread position:
               506-766
               

               Cow position:
               chr12:33350640-33350892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               197
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               86, 31
               

               Conread position:
               517-766
               

               Cow position:
               chr12:34475914-34476154 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               189
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               87, 20
               

               Conread position:
               520-766
               

               Cow position:
               chr12:29759180-29758928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 220
               

               Conread position:
               530-757
               

               Cow position:
               chr12:14236329-14236540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               62, 17
               

               Conread position:
               536-766
               

               Cow position:
               chr12:11187561-11187788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               98, 72
               

               Conread position:
               546-768
               

               Cow position:
               chr12:29801522-29801752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               46, 196
               

               Conread position:
               555-766
               

               Cow position:
               chr12:42854113-42854323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               171
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               16, 111
               

               Conread position:
               562-765
               

               Cow position:
               chr12:12709832-12709634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               571-765
               

               Cow position:
               chr12:27111234-27111429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               155
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               21, 12
               

               Conread position:
               610-752
               

               Cow position:
               chr12:25514503-25514644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               112
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               123, 0
               

               Conread position:
               610-766
               

               Cow position:
               chr12:15147449-15147610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               120
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               11, 129
               

               Conread position:
               610-769
               

               Cow position:
               chr12:21066620-21066770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               615-766
               

               Cow position:
               chr12:39710033-39710183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               118
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               118, 0
               

               Conread position:
               157-699
               

               Cow position:
               chr13:34931292-34931790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               551
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 40
               

               Conread position:
               158-305
               

               Cow position:
               chr13:25956518-25956371 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               116
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               61, 78
               

               Conread position:
               158-379
               

               Cow position:
               chr13:46637128-46637341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               155
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               143, 54
               

               Conread position:
               158-381
               

               Cow position:
               chr13:22277181-22277405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               51, 152
               

               Conread position:
               158-381
               

               Cow position:
               chr13:43384628-43384856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               175
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               48, 82
               

               Conread position:
               158-454
               

               Cow position:
               chr13:38362280-38361978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 78
               

               Conread position:
               158-564
               

               Cow position:
               chr13:37497731-37498127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 78
               

               Conread position:
               158-754
               

               Cow position:
               chr13:38535384-38534808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               613
               

               Alignm identity:
               444
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 76
               

               Conread position:
               158-766
               

               Cow position:
               chr13:12325106-12325691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               617
               

               Alignm identity:
               452
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 78
               

               Conread position:
               158-766
               

               Cow position:
               chr13:34265087-34264502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               621
               

               Alignm identity:
               461
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 70
               

               Conread position:
               158-768
               

               Cow position:
               chr13:45497259-45497870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               634
               

               Alignm identity:
               441
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 30
               

               Conread position:
               159-416
               

               Cow position:
               chr13:1368018-1367755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               55, 230
               

               Conread position:
               159-767
               

               Cow position:
               chr13:55406662-55407271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               630
               

               Alignm identity:
               461
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 77
               

               Conread position:
               163-390
               

               Cow position:
               chr13:46349510-46349737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               173
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               49, 58
               

               Conread position:
               163-640
               

               Cow position:
               chr13:39487335-39487813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               499
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 61
               

               Conread position:
               173-353
               

               Cow position:
               chr13:24373402-24373223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               129
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               37, 63
               

               Conread position:
               177-402
               

               Cow position:
               chr13:25716100-25715889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               209-766
               

               Cow position:
               chr13:19115474-19116010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               565
               

               Alignm identity:
               410
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 13
               

               Conread position:
               212-764
               

               Cow position:
               chr13:34885019-34885585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               575
               

               Alignm identity:
               407
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               208, 26
               

               Conread position:
               253-660
               

               Cow position:
               chr13:24675762-24676165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               244, 130
               

               Conread position:
               253-721
               

               Cow position:
               chr13:46464724-46464259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 8
               

               Conread position:
               255-684
               

               Cow position:
               chr13:34336360-34336767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               170, 58
               

               Conread position:
               275-484
               

               Cow position:
               chr13:11441467-11441676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               144, 108
               

               Conread position:
               281-542
               

               Cow position:
               chr13:62272006-62271745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               188
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               125, 148
               

               Conread position:
               291-494
               

               Cow position:
               chr13:59997899-59997688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               90, 110
               

               Conread position:
               291-520
               

               Cow position:
               chr13:9103773-9103547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               160
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               68, 93
               

               Conread position:
               291-714
               

               Cow position:
               chr13:47325773-47325344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 159
               

               Conread position:
               291-726
               

               Cow position:
               chr13:51240859-51241294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 92
               

               Conread position:
               301-751
               

               Cow position:
               chr13:25955478-25955031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               202, 54
               

               Conread position:
               303-504
               

               Cow position:
               chr13:30833978-30834172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               134, 83
               

               Conread position:
               308-714
               

               Cow position:
               chr13:17169346-17169745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               284, 121
               

               Conread position:
               319-767
               

               Cow position:
               chr13:44144256-44143801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 157
               

               Conread position:
               333-529
               

               Cow position:
               chr13:15489590-15489790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               155
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               48, 166
               

               Conread position:
               345-757
               

               Cow position:
               chr13:24404186-24403776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 45
               

               Conread position:
               351-667
               

               Cow position:
               chr13:21878498-21878170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               245
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               40, 145
               

               Conread position:
               353-560
               

               Cow position:
               chr13:18839113-18839323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               155
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               65, 114
               

               Conread position:
               366-621
               

               Cow position:
               chr13:26943003-26943262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               54, 24
               

               Conread position:
               369-758
               

               Cow position:
               chr13:17596984-17597362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               278
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               51, 15
               

               Conread position:
               377-750
               

               Cow position:
               chr13:11570765-11570413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               256
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               56, 21
               

               Conread position:
               378-585
               

               Cow position:
               chr13:4519125-4518922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               150
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               50, 161
               

               Conread position:
               378-668
               

               Cow position:
               chr13:21826376-21826645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               198
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               13, 52
               

               Conread position:
               378-766
               

               Cow position:
               chr13:15731353-15730965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               270
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               42, 100
               

               Conread position:
               386-674
               

               Cow position:
               chr13:20656548-20656853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               222
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               34, 52
               

               Conread position:
               387-758
               

               Cow position:
               chr13:19015248-19014870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               269
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               33, 61
               

               Conread position:
               387-761
               

               Cow position:
               chr13:33239735-33240117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 136
               

               Conread position:
               388-754
               

               Cow position:
               chr13:4947478-4947111 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               241
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               38, 212
               

               Conread position:
               389-769
               

               Cow position:
               chr13:43803146-43803531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               268
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               38, 148
               

               Conread position:
               398-732
               

               Cow position:
               chr13:51142777-51142447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 145
               

               Conread position:
               417-732
               

               Cow position:
               chr13:28605673-28605990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 22
               

               Conread position:
               418-765
               

               Cow position:
               chr13:11223160-11222830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               254
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               86, 13
               

               Conread position:
               419-766
               

               Cow position:
               chr13:14080188-14079844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 86
               

               Conread position:
               422-757
               

               Cow position:
               chr13:43385066-43385388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               179, 25
               

               Conread position:
               435-765
               

               Cow position:
               chr13:12213755-12214085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 48
               

               Conread position:
               438-734
               

               Cow position:
               chr13:5619403-5619104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               212
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               61, 9
               

               Conread position:
               439-767
               

               Cow position:
               chr13:26034598-26034295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               239
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               295, 50
               

               Conread position:
               444-629
               

               Cow position:
               chr13:47279996-47279809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               55, 77
               

               Conread position:
               459-726
               

               Cow position:
               chr13:12658014-12658269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               196
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               44, 28
               

               Conread position:
               460-771
               

               Cow position:
               chr13:4796125-4796438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 77
               

               Conread position:
               464-757
               

               Cow position:
               chr13:698693-698970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               220
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               39, 66
               

               Conread position:
               473-766
               

               Cow position:
               chr13:10854701-10854414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               232
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               30, 19
               

               Conread position:
               483-766
               

               Cow position:
               chr13:59997476-59997188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               213
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               20, 51
               

               Conread position:
               487-766
               

               Cow position:
               chr13:18597036-18596775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               224
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               16, 51
               

               Conread position:
               488-755
               

               Cow position:
               chr13:22984781-22985054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               198
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               104, 49
               

               Conread position:
               488-764
               

               Cow position:
               chr13:57611549-57611826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               204
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               14, 50
               

               Conread position:
               495-766
               

               Cow position:
               chr13:2416382-2416651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               210
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               9, 37
               

               Conread position:
               497-766
               

               Cow position:
               chr13:48580649-48580386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               500-766
               

               Cow position:
               chr13:22193753-22194013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 23
               

               Conread position:
               502-766
               

               Cow position:
               chr13:38361953-38361690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               203
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               90, 40
               

               Conread position:
               525-730
               

               Cow position:
               chr13:57246105-57246310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               149
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               66, 155
               

               Conread position:
               535-755
               

               Cow position:
               chr13:6921224-6921002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               64, 31
               

               Conread position:
               536-696
               

               Cow position:
               chr13:9103244-9103082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               132
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               538-758
               

               Cow position:
               chr13:25877493-25877703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               27, 17
               

               Conread position:
               540-758
               

               Cow position:
               chr13:18839444-18839663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               171
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               66, 139
               

               Conread position:
               545-766
               

               Cow position:
               chr13:14708748-14708976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               47, 25
               

               Conread position:
               546-765
               

               Cow position:
               chr13:18541341-18541557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               153
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               61, 114
               

               Conread position:
               547-767
               

               Cow position:
               chr13:62210366-62210575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               155
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               134, 18
               

               Conread position:
               552-758
               

               Cow position:
               chr13:4659682-4659472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               40, 165
               

               Conread position:
               571-770
               

               Cow position:
               chr13:15489927-15490133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               161
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               21, 169
               

               Conread position:
               572-766
               

               Cow position:
               chr13:30951063-30950859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               153
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               20, 173
               

               Conread position:
               574-769
               

               Cow position:
               chr13:48080178-48080379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               15, 173
               

               Conread position:
               590-766
               

               Cow position:
               chr13:27795826-27796003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               22, 147
               

               Conread position:
               609-766
               

               Cow position:
               chr13:51177602-51177759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               125
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               151, 123
               

               Conread position:
               610-766
               

               Cow position:
               chr13:20876638-20876481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               125
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               98, 124
               

               Conread position:
               610-766
               

               Cow position:
               chr13:57746299-57746457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               71, 125
               

               Conread position:
               642-766
               

               Cow position:
               chr13:20496477-20496353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               126
               

               Alignm identity:
               101
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               118, 90
               

               Conread position:
               155-379
               

               Cow position:
               chr14:9255246-9255474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               6, 87
               

               Conread position:
               157-641
               

               Cow position:
               chr14:45018443-45018906 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 79
               

               Conread position:
               157-766
               

               Cow position:
               chr14:35605258-35605869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               629
               

               Alignm identity:
               469
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 64
               

               Conread position:
               157-767
               

               Cow position:
               chr14:37983349-37983958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               623
               

               Alignm identity:
               453
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 79
               

               Conread position:
               158-379
               

               Cow position:
               chr14:18984844-18985063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               149
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               91, 47
               

               Conread position:
               158-384
               

               Cow position:
               chr14:12643705-12643929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               96, 51
               

               Conread position:
               158-418
               

               Cow position:
               chr14:3437045-3436787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               197
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               15, 72
               

               Conread position:
               158-535
               

               Cow position:
               chr14:3588388-3588777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 51
               

               Conread position:
               158-535
               

               Cow position:
               chr14:38000576-38000208 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 78
               

               Conread position:
               158-621
               

               Cow position:
               chr14:21863977-21864414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 79
               

               Conread position:
               158-628
               

               Cow position:
               chr14:14835084-14835551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 77
               

               Conread position:
               158-766
               

               Cow position:
               chr14:15011410-15012032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               633
               

               Alignm identity:
               446
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 78
               

               Conread position:
               158-769
               

               Cow position:
               chr14:47880075-47880676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               625
               

               Alignm identity:
               444
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 78
               

               Conread position:
               159-727
               

               Cow position:
               chr14:2298862-2299414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               577
               

               Alignm identity:
               390
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 77
               

               Conread position:
               159-766
               

               Cow position:
               chr14:40244221-40243616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               627
               

               Alignm identity:
               473
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 12
               

               Conread position:
               159-766
               

               Cow position:
               chr14:44886605-44885994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               627
               

               Alignm identity:
               442
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 77
               

               Conread position:
               161-766
               

               Cow position:
               chr14:31810690-31810117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               616
               

               Alignm identity:
               419
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 76
               

               Conread position:
               166-681
               

               Cow position:
               chr14:27578745-27579250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               523
               

               Alignm identity:
               379
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 70
               

               Conread position:
               167-766
               

               Cow position:
               chr14:41713063-41712477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               611
               

               Alignm identity:
               438
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 67
               

               Conread position:
               167-767
               

               Cow position:
               chr14:28007655-28007061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               619
               

               Alignm identity:
               443
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 63
               

               Conread position:
               220-390
               

               Cow position:
               chr14:38546158-38546327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               29, 15
               

               Conread position:
               251-641
               

               Cow position:
               chr14:24783196-24783590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               169, 34
               

               Conread position:
               255-636
               

               Cow position:
               chr14:45185303-45184927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               273
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               126, 149
               

               Conread position:
               255-710
               

               Cow position:
               chr14:42693603-42693147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               164, 128
               

               Conread position:
               255-767
               

               Cow position:
               chr14:44454411-44453892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               535
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 28
               

               Conread position:
               257-674
               

               Cow position:
               chr14:46546032-46546442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               287
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               135, 116
               

               Conread position:
               264-701
               

               Cow position:
               chr14:42258895-42258467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 19
               

               Conread position:
               277-657
               

               Cow position:
               chr14:19339743-19340138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 236
               

               Conread position:
               277-752
               

               Cow position:
               chr14:24193272-24192790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 66
               

               Conread position:
               285-765
               

               Cow position:
               chr14:50650462-50649991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 71
               

               Conread position:
               286-501
               

               Cow position:
               chr14:35682933-35683151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               159
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               134, 24
               

               Conread position:
               291-572
               

               Cow position:
               chr14:30020928-30021210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 61
               

               Conread position:
               339-696
               

               Cow position:
               chr14:24739129-24738755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 161
               

               Conread position:
               340-757
               

               Cow position:
               chr14:20642791-20643189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 188
               

               Conread position:
               366-667
               

               Cow position:
               chr14:46980161-46980468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               233
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               31, 156
               

               Conread position:
               366-763
               

               Cow position:
               chr14:10949659-10950055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 131
               

               Conread position:
               380-765
               

               Cow position:
               chr14:19734925-19735316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 13
               

               Conread position:
               388-766
               

               Cow position:
               chr14:34912134-34912502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 52
               

               Conread position:
               423-766
               

               Cow position:
               chr14:16715645-16715301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               244
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               77, 19
               

               Conread position:
               424-766
               

               Cow position:
               chr14:50484597-50484281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               233
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               75, 25
               

               Conread position:
               447-739
               

               Cow position:
               chr14:17556401-17556107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 91
               

               Conread position:
               460-732
               

               Cow position:
               chr14:44483207-44483466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               39, 79
               

               Conread position:
               460-761
               

               Cow position:
               chr14:17051327-17051029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               218
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               35, 77
               

               Conread position:
               461-757
               

               Cow position:
               chr14:30134090-30134390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               223
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               141, 71
               

               Conread position:
               461-766
               

               Cow position:
               chr14:22046592-22046301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 68
               

               Conread position:
               483-708
               

               Cow position:
               chr14:15662492-15662719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               10, 53
               

               Conread position:
               492-766
               

               Cow position:
               chr14:30762377-30762120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               206
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               10, 38
               

               Conread position:
               501-780
               

               Cow position:
               chr14:38722574-38722304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 36
               

               Conread position:
               502-765
               

               Cow position:
               chr14:25994315-25994572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 23
               

               Conread position:
               503-689
               

               Cow position:
               chr14:9500206-9500382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               69, 34
               

               Conread position:
               503-767
               

               Cow position:
               chr14:25448081-25447843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               198
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               505-771
               

               Cow position:
               chr14:32903930-32904191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               209
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               84, 32
               

               Conread position:
               536-766
               

               Cow position:
               chr14:36420361-36420590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 30
               

               Conread position:
               536-777
               

               Cow position:
               chr14:38000078-37999843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 33
               

               Conread position:
               539-766
               

               Cow position:
               chr14:3436318-3436104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               164
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               542-758
               

               Cow position:
               chr14:35685425-35685642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               50, 24
               

               Conread position:
               556-766
               

               Cow position:
               chr14:3589258-3589461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               157
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               36, 106
               

               Conread position:
               567-780
               

               Cow position:
               chr14:44023918-44023701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               39, 25
               

               Conread position:
               568-767
               

               Cow position:
               chr14:17462946-17462744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               150
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               23, 63
               

               Conread position:
               570-704
               

               Cow position:
               chr14:44771727-44771588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               116
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               589-767
               

               Cow position:
               chr14:38413111-38412933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               143
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               9, 32
               

               Conread position:
               608-766
               

               Cow position:
               chr14:29481213-29481370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               135
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               125, 0
               

               Conread position:
               608-767
               

               Cow position:
               chr14:5255591-5255434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               155-379
               

               Cow position:
               chr15:43275187-43275412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               158
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               6, 76
               

               Conread position:
               157-766
               

               Cow position:
               chr15:6523769-6523180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               630
               

               Alignm identity:
               442
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 44
               

               Conread position:
               157-766
               

               Cow position:
               chr15:23265439-23266040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               630
               

               Alignm identity:
               462
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 52
               
158-345UCSC Genome Browser
               Conread position:
               
               

               Cow position:
               chr15:5912768-5912583 (view  custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               52, 63
               
158-379UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr15:23172099-23171883 (view  custom track)

               
               
               
Alignm length: 228

               
               
               
Alignm identity: 158

               
               
               
Alignm E-value: 4e-21

               
               
               
Alignm gaps (pig, cow): 53, 36
158-379UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr15:39288415-39288190 (view  custom track)

               
               
               
Alignm length: 229

               
               
               
Alignm identity: 164

               
               
               
Alignm E-value: 1e-29

               
               
               
Alignm gaps (pig, cow): 60, 78

               
               
               Conread position:158-389
               
               
               Cow position:chr15:14811537-14811314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):52, 71

               
               
               Conread position:158-457
               
               
               Cow position:chr15:40065590-40065904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 78

               
               
               Conread position:158-708
               
               
               Cow position:chr15:37470307-37469750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 71

               
               
               Conread position:158-739
               
               
               Cow position:chr15:10581056-10581643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 78

               
               
               Conread position:158-766
               
               
               Cow position:chr15:53712493-53713102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 76

               
               
               Conread position:158-766
               
               
               Cow position:chr15:53728607-53728013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 76

               
               
               Conread position:158-767
               
               
               Cow position:chr15:44797629-44796999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 21

               
               
               Conread position:159-363
               
               
               Cow position:chr15:21802068-21802273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):54, 77

               
               
               Conread position:159-379
               
               
               Cow position:chr15:3832262-3832047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):50, 68

               
               
               Conread position:159-379
               
               
               Cow position:chr15:52204659-52204877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):76, 46

               
               
               Conread position:159-415
               
               
               Cow position:chr15:4623582-4623321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):52, 77

               
               
               Conread position:159-596
               
               
               Cow position:chr15:37492035-37491610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 77

               
               
               Conread position:160-585
               
               
               Cow position:chr15:9072341-9072779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 287

               
               
               Conread position:160-766
               
               
               Cow position:chr15:25683346-25683963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 76

               
               
               Conread position:161-381
               
               
               Cow position:chr15:1893018-1892804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):49, 75

               
               
               Conread position:168-765
               
               
               Cow position:chr15:52868497-52869082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 68

               
               
               Conread position:193-499
               
               
               Cow position:chr15:31918279-31917983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):17, 43

               
               
               Conread position:209-765
               
               
               Cow position:chr15:17641911-17642459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 26

               
               
               Conread position:229-640
               
               
               Cow position:chr15:27972049-27971638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:294
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):24, 46

               
               
               Conread position:229-730
               
               
               Cow position:chr15:11997461-11997987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 59

               
               
               Conread position:229-758
               
               
               Cow position:chr15:18403663-18404174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 24

               
               
               Conread position:229-771
               
               
               Cow position:chr15:31935265-31935802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 24

               
               
               Conread position:230-766
               
               
               Cow position:chr15:37633080-37633630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 57

               
               
               Conread position:255-400
               
               
               Cow position:chr15:35041837-35041982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:277-767
               
               
               Cow position:chr15:30569931-30570407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):227, 140

               
               
               Conread position:345-765
               
               
               Cow position:chr15:578889-579309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 199

               
               
               Conread position:348-732
               
               
               Cow position:chr15:12048898-12048512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 199

               
               
               Conread position:380-668
               
               
               Cow position:chr15:35042256-35042551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):24, 115

               
               
               Conread position:380-754
               
               
               Cow position:chr15:14811055-14810685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:266
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):26, 166

               
               
               Conread position:387-769
               
               
               Cow position:chr15:31855352-31855739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):33, 116

               
               
               Conread position:388-585
               
               
               Cow position:chr15:14974229-14974025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):32, 12

               
               
               Conread position:388-757
               
               
               Cow position:chr15:19813610-19813244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:258
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):111, 59

               
               
               Conread position:396-766
               
               
               Cow position:chr15:16669529-16669159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 119

               
               
               Conread position:397-730
               
               
               Cow position:chr15:1887967-1888302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 140

               
               
               Conread position:400-641
               
               
               Cow position:chr15:26365317-26365556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):103, 117

               
               
               Conread position:402-765
               
               
               Cow position:chr15:49271846-49272195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 48

               
               
               Conread position:418-766
               
               
               Cow position:chr15:4622841-4622511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:253
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):43, 32

               
               
               Conread position:422-679
               
               
               Cow position:chr15:34551850-34552110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:196
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):26, 118

               
               
               Conread position:423-766
               
               
               Cow position:chr15:3593519-3593190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):80, 114

               
               
               Conread position:424-766
               
               
               Cow position:chr15:26866779-26867094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:431-721
               
               
               Cow position:chr15:38902521-38902251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):159, 56

               
               
               Conread position:447-673
               
               
               Cow position:chr15:36864611-36864383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):21, 92

               
               
               Conread position:447-768
               
               
               Cow position:chr15:7443961-7443660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:452-766
               
               
               Cow position:chr15:52131792-52132105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 86

               
               
               Conread position:454-758
               
               
               Cow position:chr15:21802504-21802797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 69

               
               
               Conread position:460-741
               
               
               Cow position:chr15:12283132-12283405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 13

               
               
               Conread position:460-755
               
               
               Cow position:chr15:2437075-2437354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):43, 51

               
               
               Conread position:460-769
               
               
               Cow position:chr15:16972180-16971877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 81

               
               
               Conread position:460-777
               
               
               Cow position:chr15:9437460-9437772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 80

               
               
               Conread position:462-765
               
               
               Cow position:chr15:8630301-8630597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 76

               
               
               Conread position:465-757
               
               
               Cow position:chr15:49279505-49279209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):39, 73

               
               
               Conread position:482-666
               
               
               Cow position:chr15:36582576-36582393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):21, 55

               
               
               Conread position:488-732
               
               
               Cow position:chr15:9428039-9427786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):15, 49

               
               
               Conread position:497-766
               
               
               Cow position:chr15:39809503-39809772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 34

               
               
               Conread position:501-766
               
               
               Cow position:chr15:5912387-5912119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 36

               
               
               Conread position:502-765
               
               
               Cow position:chr15:11287388-11287122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 45

               
               
               Conread position:503-694
               
               
               Cow position:chr15:1892182-1891994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):81, 30

               
               
               Conread position:519-660
               
               
               Cow position:chr15:39360167-39360017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):18, 51

               
               
               Conread position:536-724
               
               
               Cow position:chr15:53335380-53335578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:536-757
               
               
               Cow position:chr15:13081343-13081577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):67, 211

               
               
               Conread position:536-757
               
               
               Cow position:chr15:28608148-28607914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):61, 56

               
               
               Conread position:536-757
               
               
               Cow position:chr15:50243324-50243540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):65, 73

               
               
               Conread position:536-766
               
               
               Cow position:chr15:21182026-21182259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:185
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):54, 115

               
               
               Conread position:536-766
               
               
               Cow position:chr15:40065922-40066154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):56, 31

               
               
               Conread position:570-766
               
               
               Cow position:chr15:16989556-16989757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):30, 122

               
               
               Conread position:589-767
               
               
               Cow position:chr15:29337785-29337608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):167, 35

               
               
               Conread position:608-757
               
               
               Cow position:chr15:9075432-9075577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):19, 85

               
               
               Conread position:608-766
               
               
               Cow position:chr15:35067038-35067197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):7, 127

               
               
               Conread position:610-732
               
               
               Cow position:chr15:26594338-26594216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:610-766
               
               
               Cow position:chr15:36278083-36277930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:610-773
               
               
               Cow position:chr15:41807429-41807268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):150, 55

               
               
               Conread position:614-766
               
               
               Cow position:chr15:1992771-1992923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):96, 104

               
               
               Conread position:620-766
               
               
               Cow position:chr15:37491608-37491470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:651-766
               
               
               Cow position:chr15:39357375-39357260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):109, 81

               
               
               Conread position:148-381
               
               
               Cow position:chr16:45157499-45157270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):63, 89

               
               
               Conread position:157-501
               
               
               Cow position:chr16:19152683-19153043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 143

               
               
               Conread position:157-533
               
               
               Cow position:chr16:17867495-17867121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 79

               
               
               Conread position:157-765
               
               
               Cow position:chr16:12243571-12242957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 52

               
               
               Conread position:157-765
               
               
               Cow position:chr16:43850842-43850234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 79

               
               
               Conread position:157-766
               
               
               Cow position:chr16:41680781-41680166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 16

               
               
               Conread position:158-418
               
               
               Cow position:chr16:45551825-45552073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):54, 78

               
               
               Conread position:158-425
               
               
               Cow position:chr16:15734560-15734823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 78

               
               
               Conread position:158-478
               
               
               Cow position:chr16:37442125-37441818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):48, 79

               
               
               Conread position:158-499
               
               
               Cow position:chr16:36911054-36910703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 39

               
               
               Conread position:158-529
               
               
               Cow position:chr16:29205049-29204690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):54, 16

               
               
               Conread position:158-765
               
               
               Cow position:chr16:47781286-47781897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 79

               
               
               Conread position:158-767
               
               
               Cow position:chr16:14799749-14799144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 25

               
               
               Conread position:158-768
               
               
               Cow position:chr16:4295538-4294936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 21

               
               
               Conread position:158-769
               
               
               Cow position:chr16:23035307-23034700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 73

               
               
               Conread position:159-767
               
               
               Cow position:chr16:13043810-13044443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 77

               
               
               Conread position:160-398
               
               
               Cow position:chr16:55674677-55674443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):7, 34

               
               
               Conread position:160-404
               
               
               Cow position:chr16:5477367-5477128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):49, 42

               
               
               Conread position:160-767
               
               
               Cow position:chr16:22786053-22785448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 76

               
               
               Conread position:161-766
               
               
               Cow position:chr16:53547599-53547022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 76

               
               
               Conread position:163-726
               
               
               Cow position:chr16:15508931-15509487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 49

               
               
               Conread position:167-396
               
               
               Cow position:chr16:19445775-19446000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 69

               
               
               Conread position:167-535
               
               
               Cow position:chr16:52814177-52813840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:265
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):45, 15

               
               
               Conread position:191-477
               
               
               Cow position:chr16:56374236-56373937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):63, 54

               
               
               Conread position:193-766
               
               
               Cow position:chr16:30572590-30572030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 41

               
               
               Conread position:203-379
               
               
               Cow position:chr16:23747567-23747391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):49, 32

               
               
               Conread position:209-766
               
               
               Cow position:chr16:16118496-16119055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 26

               
               
               Conread position:217-560
               
               
               Cow position:chr16:31375127-31374787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:253
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):39, 10

               
               
               Conread position:221-558
               
               
               Cow position:chr16:14443962-14444294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 164

               
               
               Conread position:252-418
               
               
               Cow position:chr16:2375930-2375760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):131, 42

               
               
               Conread position:255-418
               
               
               Cow position:chr16:11161500-11161657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:255-766
               
               
               Cow position:chr16:53516543-53516053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 35

               
               
               Conread position:275-620
               
               
               Cow position:chr16:47391148-47391477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 77

               
               
               Conread position:283-493
               
               
               Cow position:chr16:5131642-5131427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:284-490
               
               
               Cow position:chr16:2732025-2731821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:327-621
               
               
               Cow position:chr16:42406011-42406309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:220
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):64, 121

               
               
               Conread position:344-726
               
               
               Cow position:chr16:17393848-17393472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:270
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):7, 23

               
               
               Conread position:361-771
               
               
               Cow position:chr16:48894631-48894225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 74

               
               
               Conread position:377-754
               
               
               Cow position:chr16:17003646-17004005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:258
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):28, 9

               
               
               Conread position:377-768
               
               
               Cow position:chr16:45057608-45058006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 168

               
               
               Conread position:378-526
               
               
               Cow position:chr16:12473523-12473678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:387-653
               
               
               Cow position:chr16:608688-608402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:387-690
               
               
               Cow position:chr16:9703399-9703088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):33, 9

               
               
               Conread position:425-749
               
               
               Cow position:chr16:2371542-2371237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:246
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):74, 103

               
               
               Conread position:439-766
               
               
               Cow position:chr16:52650249-52649923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 99

               
               
               Conread position:450-732
               
               
               Cow position:chr16:14423184-14423466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 46

               
               
               Conread position:460-765
               
               
               Cow position:chr16:23878634-23878955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:239
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):44, 71

               
               
               Conread position:460-767
               
               
               Cow position:chr16:43850216-43849923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 64

               
               
               Conread position:460-767
               
               
               Cow position:chr16:56373587-56373287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 78

               
               
               Conread position:465-756
               
               
               Cow position:chr16:23301631-23301918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):39, 75

               
               
               Conread position:466-755
               
               
               Cow position:chr16:30109533-30109250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):124, 73

               
               
               Conread position:468-766
               
               
               Cow position:chr16:48604490-48604208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:477-753
               
               
               Cow position:chr16:37441603-37441331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:213
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):22, 61

               
               
               Conread position:479-680
               
               
               Cow position:chr16:37526963-37527162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):25, 19

               
               
               Conread position:486-769
               
               
               Cow position:chr16:4854647-4854376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):105, 16

               
               
               Conread position:488-753
               
               
               Cow position:chr16:37508405-37508663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):99, 10

               
               
               Conread position:496-771
               
               
               Cow position:chr16:47069478-47069723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:501-766
               
               
               Cow position:chr16:2722716-2722448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 36

               
               
               Conread position:520-766
               
               
               Cow position:chr16:17365434-17365685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):70, 46

               
               
               Conread position:538-758
               
               
               Cow position:chr16:32352480-32352702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):74, 158

               
               
               Conread position:539-766
               
               
               Cow position:chr16:14444542-14444768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:178
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):53, 27

               
               
               Conread position:543-766
               
               
               Cow position:chr16:24038462-24038693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):49, 199

               
               
               Conread position:544-766
               
               
               Cow position:chr16:14084781-14084554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 194

               
               
               Conread position:547-764
               
               
               Cow position:chr16:31374536-31374312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:548-686
               
               
               Cow position:chr16:29204515-29204372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):42, 117

               
               
               Conread position:556-757
               
               
               Cow position:chr16:17219069-17218875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):29, 64

               
               
               Conread position:556-758
               
               
               Cow position:chr16:5131400-5131195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):36, 44

               
               
               Conread position:560-767
               
               
               Cow position:chr16:13209712-13209911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:571-769
               
               
               Cow position:chr16:51456715-51456913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):19, 32

               
               
               Conread position:572-739
               
               
               Cow position:chr16:16622450-16622294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:573-765
               
               
               Cow position:chr16:52813521-52813340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):19, 34

               
               
               Conread position:610-768
               
               
               Cow position:chr16:26106593-26106749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):155, 38

               
               
               Conread position:617-766
               
               
               Cow position:chr16:37024803-37024659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:621-754
               
               
               Cow position:chr16:38397886-38397755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:621-764
               
               
               Cow position:chr16:27075611-27075755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):52, 114

               
               
               Conread position:621-766
               
               
               Cow position:chr16:10198441-10198586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):25, 113

               
               
               Conread position:153-535
               
               
               Cow position:chr17:24608844-24609238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 19

               
               
               Conread position:158-379
               
               
               Cow position:chr17:11374668-11374445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):52, 78

               
               
               Conread position:158-633
               
               
               Cow position:chr17:20208798-20208311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 78

               
               
               Conread position:158-680
               
               
               Cow position:chr17:1310227-1309709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 78

               
               
               Conread position:158-766
               
               
               Cow position:chr17:701434-702038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 25

               
               
               Conread position:159-354
               
               
               Cow position:chr17:933469-933666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):55, 77

               
               
               Conread position:159-359
               
               
               Cow position:chr17:15450388-15450587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):51, 31

               
               
               Conread position:160-766
               
               
               Cow position:chr17:28847630-28847011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 76

               
               
               Conread position:167-379
               
               
               Cow position:chr17:8035756-8035970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):39, 47

               
               
               Conread position:170-500
               
               
               Cow position:chr17:13236657-13236325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:241
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):40, 55

               
               
               Conread position:176-696
               
               
               Cow position:chr17:30358460-30357978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 61

               
               
               Conread position:193-630
               
               
               Cow position:chr17:25117032-25117466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 27

               
               
               Conread position:255-381
               
               
               Cow position:chr17:36149232-36149358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:255-390
               
               
               Cow position:chr17:7210476-7210611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:276-767
               
               
               Cow position:chr17:32451524-32451018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 9

               
               
               Conread position:278-416
               
               
               Cow position:chr17:403765-403897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:313-769
               
               
               Cow position:chr17:2735886-2736354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 150

               
               
               Conread position:356-757
               
               
               Cow position:chr17:19789635-19789252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):248, 65

               
               
               Conread position:378-757
               
               
               Cow position:chr17:6980506-6980118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:283
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):42, 63

               
               
               Conread position:380-765
               
               
               Cow position:chr17:18417997-18417601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:283
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):40, 139

               
               
               Conread position:387-766
               
               
               Cow position:chr17:27622658-27622279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 166

               
               
               Conread position:397-773
               
               
               Cow position:chr17:7210886-7211256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 88

               
               
               Conread position:414-706
               
               
               Cow position:chr17:3849017-3849306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):89, 22

               
               
               Conread position:452-756
               
               
               Cow position:chr17:11225508-11225808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 64

               
               
               Conread position:459-768
               
               
               Cow position:chr17:3223695-3223985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 37

               
               
               Conread position:461-687
               
               
               Cow position:chr17:27623645-27623423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):41, 85

               
               
               Conread position:462-749
               
               
               Cow position:chr17:13703631-13703913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):41, 25

               
               
               Conread position:483-764
               
               
               Cow position:chr17:17500998-17500733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:208
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):20, 55

               
               
               Conread position:489-771
               
               
               Cow position:chr17:37722778-37722510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:497-755
               
               
               Cow position:chr17:15450865-15451115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):95, 41

               
               
               Conread position:517-766
               
               
               Cow position:chr17:10850967-10850722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):73, 153

               
               
               Conread position:535-766
               
               
               Cow position:chr17:12306584-12306813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):57, 20

               
               
               Conread position:536-700
               
               
               Cow position:chr17:30330729-30330890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):80, 19

               
               
               Conread position:536-754
               
               
               Cow position:chr17:404258-404488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):56, 210

               
               
               Conread position:536-762
               
               
               Cow position:chr17:33271378-33271149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:179
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):56, 33

               
               
               Conread position:544-752
               
               
               Cow position:chr17:1364669-1364466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):46, 72

               
               
               Conread position:548-766
               
               
               Cow position:chr17:26481234-26481457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:174
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):44, 192

               
               
               Conread position:552-766
               
               
               Cow position:chr17:43143378-43143155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):40, 131

               
               
               Conread position:558-756
               
               
               Cow position:chr17:10261537-10261735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):34, 127

               
               
               Conread position:561-767
               
               
               Cow position:chr17:41899177-41898968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:567-766
               
               
               Cow position:chr17:4625196-4625395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 106

               
               
               Conread position:570-723
               
               
               Cow position:chr17:37166541-37166393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):20, 30

               
               
               Conread position:587-766
               
               
               Cow position:chr17:14779999-14780178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):29, 145

               
               
               Conread position:605-757
               
               
               Cow position:chr17:26630736-26630587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:614-757
               
               
               Cow position:chr17:13235996-13236138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:617-769
               
               
               Cow position:chr17:25117561-25117712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:629-766
               
               
               Cow position:chr17:10436851-10436718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:648-766
               
               
               Cow position:chr17:3797791-3797908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:651-767
               
               
               Cow position:chr17:45212548-45212433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:155-311
               
               
               Cow position:chr18:23317157-23316999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):5, 82

               
               
               Conread position:157-339
               
               
               Cow position:chr18:16258815-16258996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):55, 73

               
               
               Conread position:158-388
               
               
               Cow position:chr18:1062050-1061829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):52, 78

               
               
               Conread position:158-404
               
               
               Cow position:chr18:23669312-23669061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):52, 72

               
               
               Conread position:158-415
               
               
               Cow position:chr18:31393548-31393798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 80

               
               
               Conread position:158-502
               
               
               Cow position:chr18:8170146-8170488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:249
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):52, 18

               
               
               Conread position:158-706
               
               
               Cow position:chr18:29224650-29225183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 78

               
               
               Conread position:158-766
               
               
               Cow position:chr18:39475298-39474703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 53

               
               
               Conread position:158-767
               
               
               Cow position:chr18:28085529-28086142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 74

               
               
               Conread position:158-771
               
               
               Cow position:chr18:32860614-32861219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 78

               
               
               Conread position:163-766
               
               
               Cow position:chr18:22065385-22064817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 73

               
               
               Conread position:166-394
               
               
               Cow position:chr18:21291042-21290812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):46, 71

               
               
               Conread position:166-757
               
               
               Cow position:chr18:25847041-25846482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 70

               
               
               Conread position:187-509
               
               
               Cow position:chr18:48549973-48550296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:241
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):23, 49

               
               
               Conread position:203-467
               
               
               Cow position:chr18:8204529-8204797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):9, 23

               
               
               Conread position:259-622
               
               
               Cow position:chr18:35471744-35471386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 123

               
               
               Conread position:275-766
               
               
               Cow position:chr18:1700667-1701146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 88

               
               
               Conread position:282-680
               
               
               Cow position:chr18:23316689-23316294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 7

               
               
               Conread position:286-765
               
               
               Cow position:chr18:22433703-22433224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 67

               
               
               Conread position:298-764
               
               
               Cow position:chr18:27404992-27405446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):285, 110

               
               
               Conread position:334-766
               
               
               Cow position:chr18:16259394-16259829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 41

               
               
               Conread position:365-768
               
               
               Cow position:chr18:50880635-50881054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 104

               
               
               Conread position:378-647
               
               
               Cow position:chr18:33896010-33896278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):41, 63

               
               
               Conread position:386-726
               
               
               Cow position:chr18:5060373-5060010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):34, 88

               
               
               Conread position:392-588
               
               
               Cow position:chr18:21290586-21290390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):28, 49

               
               
               Conread position:431-596
               
               
               Cow position:chr18:16539144-16539306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):72, 25

               
               
               Conread position:432-765
               
               
               Cow position:chr18:24664209-24663885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 63

               
               
               Conread position:432-766
               
               
               Cow position:chr18:53047825-53047494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 106

               
               
               Conread position:463-758
               
               
               Cow position:chr18:29081276-29081567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):40, 75

               
               
               Conread position:483-766
               
               
               Cow position:chr18:1129165-1129457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):22, 96

               
               
               Conread position:492-755
               
               
               Cow position:chr18:50242349-50242610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):9, 39

               
               
               Conread position:492-758
               
               
               Cow position:chr18:26866121-26866389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):10, 230

               
               
               Conread position:492-766
               
               
               Cow position:chr18:21123232-21122966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:213
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):11, 40

               
               
               Conread position:509-769
               
               
               Cow position:chr18:49436659-49436920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 31

               
               
               Conread position:530-703
               
               
               Cow position:chr18:55748949-55748768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):14, 34

               
               
               Conread position:542-733
               
               
               Cow position:chr18:8170755-8170960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):49, 93

               
               
               Conread position:556-766
               
               
               Cow position:chr18:32371761-32371560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):36, 54

               
               
               Conread position:558-766
               
               
               Cow position:chr18:52870961-52871173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):39, 34

               
               
               Conread position:564-762
               
               
               Cow position:chr18:12078748-12078542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):37, 178

               
               
               Conread position:567-758
               
               
               Cow position:chr18:36456398-36456594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:159
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):25, 172

               
               
               Conread position:608-757
               
               
               Cow position:chr18:1740715-1740566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):14, 126

               
               
               Conread position:610-753
               
               
               Cow position:chr18:26667690-26667826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):51, 14

               
               
               Conread position:610-765
               
               
               Cow position:chr18:1195888-1196033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:610-765
               
               
               Cow position:chr18:19213452-19213299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:628-766
               
               
               Cow position:chr18:35471136-35470999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:629-766
               
               
               Cow position:chr18:32286651-32286785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):131, 52

               
               
               Conread position:656-766
               
               
               Cow position:chr18:23503386-23503279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:143-379
               
               
               Cow position:chr19:31395937-31395698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 95

               
               
               Conread position:158-344
               
               
               Cow position:chr19:30452791-30452603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):54, 78

               
               
               Conread position:158-380
               
               
               Cow position:chr19:42706382-42706170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):55, 32

               
               
               Conread position:158-490
               
               
               Cow position:chr19:36478875-36479200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:233
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):54, 67

               
               
               Conread position:158-565
               
               
               Cow position:chr19:14534667-14534290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:287
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):44, 25

               
               
               Conread position:158-631
               
               
               Cow position:chr19:3082062-3082531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 78

               
               
               Conread position:158-765
               
               
               Cow position:chr19:30746385-30747005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 78

               
               
               Conread position:158-766
               
               
               Cow position:chr19:30052016-30051425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 76

               
               
               Conread position:159-381
               
               
               Cow position:chr19:28800159-28799933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):24, 94

               
               
               Conread position:159-497
               
               
               Cow position:chr19:4609841-4610167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 14

               
               
               Conread position:159-567
               
               
               Cow position:chr19:426290-425892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:282
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):52, 77

               
               
               Conread position:160-359
               
               
               Cow position:chr19:38396081-38395882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):53, 45

               
               
               Conread position:163-554
               
               
               Cow position:chr19:33285320-33284923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 72

               
               
               Conread position:166-691
               
               
               Cow position:chr19:19242090-19242591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 10

               
               
               Conread position:167-484
               
               
               Cow position:chr19:20700067-20700397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 70

               
               
               Conread position:245-404
               
               
               Cow position:chr19:4600422-4600578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:291-766
               
               
               Cow position:chr19:30350110-30349650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 78

               
               
               Conread position:294-766
               
               
               Cow position:chr19:25846443-25846892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 79

               
               
               Conread position:318-766
               
               
               Cow position:chr19:30352257-30352668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:310
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):45, 69

               
               
               Conread position:319-510
               
               
               Cow position:chr19:35873836-35873630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):77, 24

               
               
               Conread position:328-765
               
               
               Cow position:chr19:4600652-4601088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 58

               
               
               Conread position:341-518
               
               
               Cow position:chr19:30452372-30452194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):78, 122

               
               
               Conread position:364-720
               
               
               Cow position:chr19:22670676-22670319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 32

               
               
               Conread position:375-725
               
               
               Cow position:chr19:30188596-30188236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 22

               
               
               Conread position:377-688
               
               
               Cow position:chr19:51070686-51070374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:234
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):43, 153

               
               
               Conread position:378-674
               
               
               Cow position:chr19:49483947-49484248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):42, 9

               
               
               Conread position:420-765
               
               
               Cow position:chr19:28560575-28560224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:268
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):16, 117

               
               
               Conread position:444-758
               
               
               Cow position:chr19:55898311-55898613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):157, 42

               
               
               Conread position:447-765
               
               
               Cow position:chr19:6362554-6362870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 48

               
               
               Conread position:456-754
               
               
               Cow position:chr19:4548377-4548079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):40, 73

               
               
               Conread position:460-633
               
               
               Cow position:chr19:33954976-33955142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):43, 57

               
               
               Conread position:460-766
               
               
               Cow position:chr19:28606074-28605767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:460-766
               
               
               Cow position:chr19:30880099-30880403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 71

               
               
               Conread position:473-766
               
               
               Cow position:chr19:36388633-36388355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 64

               
               
               Conread position:479-766
               
               
               Cow position:chr19:47772322-47772605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 59

               
               
               Conread position:483-766
               
               
               Cow position:chr19:41504271-41504554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 55

               
               
               Conread position:488-753
               
               
               Cow position:chr19:46189157-46188910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):11, 51

               
               
               Conread position:489-740
               
               
               Cow position:chr19:13448471-13448724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 49

               
               
               Conread position:492-700
               
               
               Cow position:chr19:50843568-50843787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):44, 163

               
               
               Conread position:502-766
               
               
               Cow position:chr19:6478494-6478227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):90, 18

               
               
               Conread position:503-765
               
               
               Cow position:chr19:55418382-55418630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:536-732
               
               
               Cow position:chr19:35026818-35026618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):53, 129

               
               
               Conread position:536-766
               
               
               Cow position:chr19:33590064-33590307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 211

               
               
               Conread position:547-714
               
               
               Cow position:chr19:36479200-36479364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):60, 22

               
               
               Conread position:551-766
               
               
               Cow position:chr19:30451665-30451463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):33, 94

               
               
               Conread position:561-764
               
               
               Cow position:chr19:30385144-30385353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):31, 109

               
               
               Conread position:571-767
               
               
               Cow position:chr19:14534093-14533892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):21, 32

               
               
               Conread position:589-766
               
               
               Cow position:chr19:35826805-35826989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):29, 150

               
               
               Conread position:589-769
               
               
               Cow position:chr19:425890-425717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):21, 56

               
               
               Conread position:605-765
               
               
               Cow position:chr19:3082527-3082684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):27, 9

               
               
               Conread position:609-726
               
               
               Cow position:chr19:12130791-12130673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:610-766
               
               
               Cow position:chr19:12478116-12477960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):100, 108

               
               
               Conread position:610-766
               
               
               Cow position:chr19:39299461-39299312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):66, 83

               
               
               Conread position:614-765
               
               
               Cow position:chr19:41554696-41554840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:617-770
               
               
               Cow position:chr19:33847809-33847963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):68, 118

               
               
               Conread position:625-766
               
               
               Cow position:chr19:33955205-33955346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):16, 108

               
               
               Conread position:648-766
               
               
               Cow position:chr19:37601690-37601574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:155-390
               
               
               Cow position:chr2:11467658-11467424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):9, 55

               
               
               Conread position:157-374
               
               
               Cow position:chr2:69982406-69982619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):54, 79

               
               
               Conread position:157-569
               
               
               Cow position:chr2:62674252-62673848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 74

               
               
               Conread position:157-725
               
               
               Cow position:chr2:41490635-41491201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 79

               
               
               Conread position:158-329
               
               
               Cow position:chr2:19749596-19749767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):54, 13

               
               
               Conread position:158-331
               
               
               Cow position:chr2:51827667-51827496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):52, 78

               
               
               Conread position:158-332
               
               
               Cow position:chr2:54890309-54890476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):52, 72

               
               
               Conread position:158-358
               
               
               Cow position:chr2:85055985-85056187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):54, 68

               
               
               Conread position:158-373
               
               
               Cow position:chr2:39508459-39508675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):52, 70

               
               
               Conread position:158-379
               
               
               Cow position:chr2:31910036-31909820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):90, 46

               
               
               Conread position:158-411
               
               
               Cow position:chr2:46141177-46140929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):52, 78

               
               
               Conread position:158-416
               
               
               Cow position:chr2:27145378-27145112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):91, 77

               
               
               Conread position:158-555
               
               
               Cow position:chr2:18249902-18249492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 45

               
               
               Conread position:158-660
               
               
               Cow position:chr2:77968513-77968015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 78

               
               
               Conread position:158-706
               
               
               Cow position:chr2:53716993-53716448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 78

               
               
               Conread position:158-765
               
               
               Cow position:chr2:63288162-63287558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 68

               
               
               Conread position:158-766
               
               
               Cow position:chr2:33791491-33790884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 78

               
               
               Conread position:158-766
               
               
               Cow position:chr2:72598793-72599413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 78

               
               
               Conread position:159-774
               
               
               Cow position:chr2:43345302-43344682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 77

               
               
               Conread position:160-343
               
               
               Cow position:chr2:20301944-20302124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):50, 70

               
               
               Conread position:160-381
               
               
               Cow position:chr2:6292621-6292844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):39, 90

               
               
               Conread position:160-535
               
               
               Cow position:chr2:64073539-64073928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 77

               
               
               Conread position:160-764
               
               
               Cow position:chr2:74388130-74387531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 43

               
               
               Conread position:162-379
               
               
               Cow position:chr2:35447875-35447656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):49, 74

               
               
               Conread position:166-376
               
               
               Cow position:chr2:908415-908627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):40, 89

               
               
               Conread position:166-390
               
               
               Cow position:chr2:27318851-27319077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):44, 70

               
               
               Conread position:167-380
               
               
               Cow position:chr2:66435283-66435492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):47, 20

               
               
               Conread position:167-647
               
               
               Cow position:chr2:71121024-71121494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 70

               
               
               Conread position:167-679
               
               
               Cow position:chr2:32393411-32393907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 69

               
               
               Conread position:169-766
               
               
               Cow position:chr2:21697733-21697128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 169

               
               
               Conread position:176-484
               
               
               Cow position:chr2:76055549-76055237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 44

               
               
               Conread position:178-767
               
               
               Cow position:chr2:31420026-31420600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 28

               
               
               Conread position:187-766
               
               
               Cow position:chr2:7211811-7212391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 16

               
               
               Conread position:255-523
               
               
               Cow position:chr2:3296272-3296549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):62, 138

               
               
               Conread position:257-507
               
               
               Cow position:chr2:31490328-31490575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):122, 32

               
               
               Conread position:257-756
               
               
               Cow position:chr2:3182412-3181928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 28

               
               
               Conread position:261-758
               
               
               Cow position:chr2:39196681-39196197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 33

               
               
               Conread position:265-766
               
               
               Cow position:chr2:82828273-82827781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 20

               
               
               Conread position:275-766
               
               
               Cow position:chr2:7779388-7778889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 48

               
               
               Conread position:286-766
               
               
               Cow position:chr2:47746343-47746817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 69

               
               
               Conread position:291-641
               
               
               Cow position:chr2:42286393-42286023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 204

               
               
               Conread position:295-766
               
               
               Cow position:chr2:14037585-14037126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 52

               
               
               Conread position:334-580
               
               
               Cow position:chr2:37003463-37003707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):85, 49

               
               
               Conread position:358-756
               
               
               Cow position:chr2:13048404-13048795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 182

               
               
               Conread position:366-689
               
               
               Cow position:chr2:20281682-20282017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):54, 32

               
               
               Conread position:374-699
               
               
               Cow position:chr2:1287655-1287983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):99, 9

               
               
               Conread position:378-716
               
               
               Cow position:chr2:9242916-9243249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):10, 54

               
               
               Conread position:378-765
               
               
               Cow position:chr2:3544386-3544002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:272
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):11, 63

               
               
               Conread position:387-757
               
               
               Cow position:chr2:4927851-4927487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:261
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):58, 34

               
               
               Conread position:388-755
               
               
               Cow position:chr2:9043413-9043782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):10, 152

               
               
               Conread position:416-674
               
               
               Cow position:chr2:33391523-33391282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:417-766
               
               
               Cow position:chr2:4830558-4830237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):83, 23

               
               
               Conread position:418-764
               
               
               Cow position:chr2:45470768-45471086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):171, 11

               
               
               Conread position:418-766
               
               
               Cow position:chr2:23062664-23062324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 11

               
               
               Conread position:425-703
               
               
               Cow position:chr2:57501493-57501765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):10, 66

               
               
               Conread position:426-766
               
               
               Cow position:chr2:68962832-68962512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):46, 71

               
               
               Conread position:430-766
               
               
               Cow position:chr2:62463735-62463393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 8

               
               
               Conread position:439-766
               
               
               Cow position:chr2:52347499-52347177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:234
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):63, 99

               
               
               Conread position:447-726
               
               
               Cow position:chr2:80604050-80603768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 91

               
               
               Conread position:447-746
               
               
               Cow position:chr2:39411924-39412225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 251

               
               
               Conread position:451-768
               
               
               Cow position:chr2:12777288-12776977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 43

               
               
               Conread position:460-756
               
               
               Cow position:chr2:15273603-15273301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 127

               
               
               Conread position:460-761
               
               
               Cow position:chr2:40370471-40370186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:460-766
               
               
               Cow position:chr2:7365926-7365626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 21

               
               
               Conread position:465-769
               
               
               Cow position:chr2:52183252-52183549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 20

               
               
               Conread position:473-766
               
               
               Cow position:chr2:13684905-13685188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 65

               
               
               Conread position:475-721
               
               
               Cow position:chr2:44983361-44983112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):11, 27

               
               
               Conread position:476-766
               
               
               Cow position:chr2:18759804-18760081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):14, 64

               
               
               Conread position:477-685
               
               
               Cow position:chr2:13540788-13540989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):47, 92

               
               
               Conread position:477-757
               
               
               Cow position:chr2:69982679-69982945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):26, 61

               
               
               Conread position:477-766
               
               
               Cow position:chr2:18274356-18274068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 54

               
               
               Conread position:479-756
               
               
               Cow position:chr2:11736719-11736988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):16, 42

               
               
               Conread position:481-719
               
               
               Cow position:chr2:3730422-3730660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):9, 58

               
               
               Conread position:483-766
               
               
               Cow position:chr2:46130616-46130333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 54

               
               
               Conread position:488-766
               
               
               Cow position:chr2:41417911-41417640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:216
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):15, 52

               
               
               Conread position:492-763
               
               
               Cow position:chr2:19750658-19750925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):83, 25

               
               
               Conread position:496-712
               
               
               Cow position:chr2:38583594-38583373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):8, 42

               
               
               Conread position:500-769
               
               
               Cow position:chr2:5767710-5767452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 25

               
               
               Conread position:511-707
               
               
               Cow position:chr2:18249265-18249075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:522-769
               
               
               Cow position:chr2:49441181-49441430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):70, 132

               
               
               Conread position:530-769
               
               
               Cow position:chr2:51826806-51826571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:185
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):6, 48

               
               
               Conread position:535-740
               
               
               Cow position:chr2:47962615-47962419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:536-756
               
               
               Cow position:chr2:33823254-33823048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):60, 35

               
               
               Conread position:536-768
               
               
               Cow position:chr2:19480713-19480941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):65, 43

               
               
               Conread position:537-742
               
               
               Cow position:chr2:19130522-19130722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):56, 29

               
               
               Conread position:539-756
               
               
               Cow position:chr2:9709831-9710051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):53, 64

               
               
               Conread position:540-758
               
               
               Cow position:chr2:38805983-38805761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):52, 198

               
               
               Conread position:541-766
               
               
               Cow position:chr2:56822963-56822735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:177
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):51, 141

               
               
               Conread position:547-773
               
               
               Cow position:chr2:43000913-43000688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):25, 60

               
               
               Conread position:564-764
               
               
               Cow position:chr2:23811505-23811695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):28, 99

               
               
               Conread position:568-766
               
               
               Cow position:chr2:53280772-53280980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):24, 176

               
               
               Conread position:572-766
               
               
               Cow position:chr2:20534229-20534029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):19, 31

               
               
               Conread position:575-743
               
               
               Cow position:chr2:73205032-73204857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):16, 165

               
               
               Conread position:577-766
               
               
               Cow position:chr2:25112541-25112730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):15, 59

               
               
               Conread position:606-766
               
               
               Cow position:chr2:36213912-36213754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):104, 112

               
               
               Conread position:609-766
               
               
               Cow position:chr2:16522042-16522199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):11, 127

               
               
               Conread position:609-766
               
               
               Cow position:chr2:59592564-59592406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):11, 41

               
               
               Conread position:610-758
               
               
               Cow position:chr2:78912361-78912216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):21, 44

               
               
               Conread position:610-766
               
               
               Cow position:chr2:12910632-12910787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:621-766
               
               
               Cow position:chr2:71121693-71121837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:626-773
               
               
               Cow position:chr2:37155547-37155403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:649-766
               
               
               Cow position:chr2:30906351-30906235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:92
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:155-418
               
               
               Cow position:chr20:20350963-20350702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 82

               
               
               Conread position:155-523
               
               
               Cow position:chr20:16585603-16585228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 74

               
               
               Conread position:155-535
               
               
               Cow position:chr20:17474757-17474361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 83

               
               
               Conread position:157-390
               
               
               Cow position:chr20:32153541-32153771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):52, 73

               
               
               Conread position:158-331
               
               
               Cow position:chr20:27843684-27843854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):94, 39

               
               
               Conread position:158-428
               
               
               Cow position:chr20:7539191-7538924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):55, 78

               
               
               Conread position:158-463
               
               
               Cow position:chr20:23422362-23422057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):51, 43

               
               
               Conread position:158-622
               
               
               Cow position:chr20:4851191-4851662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 41

               
               
               Conread position:158-641
               
               
               Cow position:chr20:27977673-27977186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 76

               
               
               Conread position:158-663
               
               
               Cow position:chr20:25293627-25294132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:530
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 78

               
               
               Conread position:158-698
               
               
               Cow position:chr20:24280001-24280535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 154

               
               
               Conread position:158-698
               
               
               Cow position:chr20:35249557-35249012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 25

               
               
               Conread position:159-757
               
               
               Cow position:chr20:2858376-2858971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 77

               
               
               Conread position:159-768
               
               
               Cow position:chr20:22920135-22919515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 77

               
               
               Conread position:159-774
               
               
               Cow position:chr20:31563941-31563329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 77

               
               
               Conread position:162-381
               
               
               Cow position:chr20:12809035-12809257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):49, 75

               
               
               Conread position:169-353
               
               
               Cow position:chr20:4615760-4615576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):40, 58

               
               
               Conread position:198-767
               
               
               Cow position:chr20:13589086-13588511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 41

               
               
               Conread position:200-384
               
               
               Cow position:chr20:21402978-21403162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):12, 36

               
               
               Conread position:209-758
               
               
               Cow position:chr20:14864787-14864236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 26

               
               
               Conread position:220-765
               
               
               Cow position:chr20:15147891-15147354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 15

               
               
               Conread position:273-406
               
               
               Cow position:chr20:28800615-28800482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:277-639
               
               
               Cow position:chr20:36707305-36706943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:264
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):148, 13

               
               
               Conread position:288-532
               
               
               Cow position:chr20:12119453-12119198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):99, 49

               
               
               Conread position:291-590
               
               
               Cow position:chr20:25991923-25991612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:237
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):88, 230

               
               
               Conread position:292-765
               
               
               Cow position:chr20:22420635-22420161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 48

               
               
               Conread position:315-580
               
               
               Cow position:chr20:26992960-26993226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 222

               
               
               Conread position:333-711
               
               
               Cow position:chr20:27844220-27844617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 105

               
               
               Conread position:393-677
               
               
               Cow position:chr20:9918729-9919027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:214
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:415-754
               
               
               Cow position:chr20:3377011-3376676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 13

               
               
               Conread position:418-765
               
               
               Cow position:chr20:21002247-21001910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 11

               
               
               Conread position:418-767
               
               
               Cow position:chr20:5668491-5668134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 11

               
               
               Conread position:424-725
               
               
               Cow position:chr20:21847601-21847317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):19, 69

               
               
               Conread position:430-766
               
               
               Cow position:chr20:33154671-33154339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:250
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):12, 111

               
               
               Conread position:460-764
               
               
               Cow position:chr20:20350450-20350155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 58

               
               
               Conread position:460-765
               
               
               Cow position:chr20:21415326-21415025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:220
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):41, 78

               
               
               Conread position:461-730
               
               
               Cow position:chr20:13790333-13790604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):40, 109

               
               
               Conread position:461-746
               
               
               Cow position:chr20:31098049-31098329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):130, 38

               
               
               Conread position:471-640
               
               
               Cow position:chr20:28617756-28617591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):34, 73

               
               
               Conread position:477-766
               
               
               Cow position:chr20:23422006-23421722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:222
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):26, 58

               
               
               Conread position:479-765
               
               
               Cow position:chr20:30285722-30286003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:217
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):20, 59

               
               
               Conread position:491-756
               
               
               Cow position:chr20:887284-887558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):12, 122

               
               
               Conread position:495-725
               
               
               Cow position:chr20:7284231-7284456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):119, 7

               
               
               Conread position:500-766
               
               
               Cow position:chr20:21403551-21403814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):112, 37

               
               
               Conread position:513-766
               
               
               Cow position:chr20:23400675-23400915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):79, 24

               
               
               Conread position:535-727
               
               
               Cow position:chr20:20072142-20071942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):57, 172

               
               
               Conread position:536-769
               
               
               Cow position:chr20:36988185-36987949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:185
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):54, 33

               
               
               Conread position:542-771
               
               
               Cow position:chr20:20064240-20064007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):51, 112

               
               
               Conread position:551-766
               
               
               Cow position:chr20:7801704-7801493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:171
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):39, 59

               
               
               Conread position:551-766
               
               
               Cow position:chr20:30243642-30243845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:551-768
               
               
               Cow position:chr20:21301045-21300825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):9, 82

               
               
               Conread position:563-770
               
               
               Cow position:chr20:36373834-36373617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):22, 180

               
               
               Conread position:568-758
               
               
               Cow position:chr20:17473153-17472959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):12, 89

               
               
               Conread position:568-773
               
               
               Cow position:chr20:16582845-16582638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):26, 63

               
               
               Conread position:605-755
               
               
               Cow position:chr20:12118531-12118378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):76, 131

               
               
               Conread position:621-766
               
               
               Cow position:chr20:4851792-4851935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:622-767
               
               
               Cow position:chr20:15492284-15492428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):86, 80

               
               
               Conread position:626-765
               
               
               Cow position:chr20:27976966-27976829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):84, 60

               
               
               Conread position:157-767
               
               
               Cow position:chr21:23399007-23399620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:158-311
               
               
               Cow position:chr21:37282354-37282506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):94, 53

               
               
               Conread position:158-378
               
               
               Cow position:chr21:30897468-30897684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):79, 90

               
               
               Conread position:158-381
               
               
               Cow position:chr21:33292767-33292993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:174
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):55, 78

               
               
               Conread position:158-418
               
               
               Cow position:chr21:24944844-24944576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:201
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):20, 79

               
               
               Conread position:158-505
               
               
               Cow position:chr21:6280345-6280696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:240
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):65, 17

               
               
               Conread position:158-548
               
               
               Cow position:chr21:8273512-8273092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:294
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):54, 142

               
               
               Conread position:158-754
               
               
               Cow position:chr21:16166588-16166004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 19

               
               
               Conread position:158-758
               
               
               Cow position:chr21:1991339-1991929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 43

               
               
               Conread position:158-758
               
               
               Cow position:chr21:24972553-24971976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 74

               
               
               Conread position:158-766
               
               
               Cow position:chr21:15543896-15543296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 17

               
               
               Conread position:159-378
               
               
               Cow position:chr21:9040921-9041140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):52, 62

               
               
               Conread position:159-600
               
               
               Cow position:chr21:5597205-5597632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:310
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):54, 92

               
               
               Conread position:159-642
               
               
               Cow position:chr21:25018920-25019399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 12

               
               
               Conread position:159-683
               
               
               Cow position:chr21:37355730-37356235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 97

               
               
               Conread position:168-329
               
               
               Cow position:chr21:37941623-37941460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):44, 112

               
               
               Conread position:173-766
               
               
               Cow position:chr21:45447656-45448242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 63

               
               
               Conread position:175-321
               
               
               Cow position:chr21:12077419-12077566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):35, 61

               
               
               Conread position:192-534
               
               
               Cow position:chr21:39765922-39766267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 24

               
               
               Conread position:192-771
               
               
               Cow position:chr21:26632357-26631797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 43

               
               
               Conread position:254-683
               
               
               Cow position:chr21:16678958-16679363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:305
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):35, 10

               
               
               Conread position:310-629
               
               
               Cow position:chr21:7724743-7724443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):168, 18

               
               
               Conread position:328-766
               
               
               Cow position:chr21:39075270-39074824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 180

               
               
               Conread position:333-644
               
               
               Cow position:chr21:37941271-37940964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:240
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):46, 107

               
               
               Conread position:348-756
               
               
               Cow position:chr21:22941621-22942024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 86

               
               
               Conread position:351-767
               
               
               Cow position:chr21:45962639-45963060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 91

               
               
               Conread position:362-766
               
               
               Cow position:chr21:29943160-29943564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:274
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):36, 130

               
               
               Conread position:379-583
               
               
               Cow position:chr21:27089849-27089645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):48, 15

               
               
               Conread position:383-764
               
               
               Cow position:chr21:26742228-26741868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 110

               
               
               Conread position:404-612
               
               
               Cow position:chr21:30793973-30793761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):18, 42

               
               
               Conread position:431-754
               
               
               Cow position:chr21:9976498-9976830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):112, 8

               
               
               Conread position:447-757
               
               
               Cow position:chr21:23286298-23285996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 45

               
               
               Conread position:462-728
               
               
               Cow position:chr21:26579660-26579925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):42, 25

               
               
               Conread position:463-721
               
               
               Cow position:chr21:29644001-29643734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):40, 69

               
               
               Conread position:466-690
               
               
               Cow position:chr21:5994616-5994396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):37, 28

               
               
               Conread position:474-765
               
               
               Cow position:chr21:38021267-38021550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):147, 47

               
               
               Conread position:476-779
               
               
               Cow position:chr21:12079591-12079886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:227
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):131, 19

               
               
               Conread position:477-780
               
               
               Cow position:chr21:17672007-17671705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 34

               
               
               Conread position:500-764
               
               
               Cow position:chr21:37282919-37283171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):92, 15

               
               
               Conread position:536-765
               
               
               Cow position:chr21:5486980-5487191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:536-766
               
               
               Cow position:chr21:30567538-30567312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):55, 38

               
               
               Conread position:536-766
               
               
               Cow position:chr21:42396409-42396641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):54, 64

               
               
               Conread position:540-736
               
               
               Cow position:chr21:33975069-33975275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):60, 33

               
               
               Conread position:551-766
               
               
               Cow position:chr21:6282368-6282579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):62, 106

               
               
               Conread position:558-766
               
               
               Cow position:chr21:27678461-27678673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:168
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):33, 16

               
               
               Conread position:609-778
               
               
               Cow position:chr21:27089450-27089284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:610-766
               
               
               Cow position:chr21:37170271-37170423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):105, 82

               
               
               Conread position:611-753
               
               
               Cow position:chr21:28650851-28650990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:617-757
               
               
               Cow position:chr21:39527396-39527533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):108, 74

               
               
               Conread position:626-766
               
               
               Cow position:chr21:25019518-25019657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:631-754
               
               
               Cow position:chr21:5588907-5588786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:149-348
               
               
               Cow position:chr22:42978031-42978227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):11, 66

               
               
               Conread position:158-379
               
               
               Cow position:chr22:35143221-35143439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):52, 72

               
               
               Conread position:158-380
               
               
               Cow position:chr22:39303014-39302792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):53, 78

               
               
               Conread position:158-418
               
               
               Cow position:chr22:24335511-24335246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:200
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):51, 72

               
               
               Conread position:158-459
               
               
               Cow position:chr22:42778173-42778461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):54, 75

               
               
               Conread position:158-483
               
               
               Cow position:chr22:45496559-45496892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:248
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):44, 71

               
               
               Conread position:158-767
               
               
               Cow position:chr22:7281201-7281813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 47

               
               
               Conread position:158-771
               
               
               Cow position:chr22:25457829-25458437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 71

               
               
               Conread position:161-399
               
               
               Cow position:chr22:43044182-43043943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):53, 75

               
               
               Conread position:166-584
               
               
               Cow position:chr22:14508592-14508181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 64

               
               
               Conread position:167-612
               
               
               Cow position:chr22:609939-609504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:312
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):90, 30

               
               
               Conread position:170-523
               
               
               Cow position:chr22:45291504-45291867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:260
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):40, 47

               
               
               Conread position:178-497
               
               
               Cow position:chr22:12628489-12628173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:227
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):32, 60

               
               
               Conread position:188-527
               
               
               Cow position:chr22:28755487-28755144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:243
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:201-584
               
               
               Cow position:chr22:15696182-15696578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:287
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):9, 33

               
               
               Conread position:227-765
               
               
               Cow position:chr22:32018578-32018034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 50

               
               
               Conread position:251-622
               
               
               Cow position:chr22:47385897-47385510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:285
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):128, 152

               
               
               Conread position:275-753
               
               
               Cow position:chr22:4057878-4058364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 108

               
               
               Conread position:341-767
               
               
               Cow position:chr22:44637744-44638176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 148

               
               
               Conread position:358-720
               
               
               Cow position:chr22:15873489-15873841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:254
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):33, 103

               
               
               Conread position:358-756
               
               
               Cow position:chr22:29064512-29064910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 47

               
               
               Conread position:359-616
               
               
               Cow position:chr22:39904638-39904387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):61, 27

               
               
               Conread position:378-754
               
               
               Cow position:chr22:13997661-13998023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:255
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):37, 10

               
               
               Conread position:380-758
               
               
               Cow position:chr22:8714076-8714441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:250
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):43, 160

               
               
               Conread position:380-766
               
               
               Cow position:chr22:34649427-34649813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):56, 175

               
               
               Conread position:400-726
               
               
               Cow position:chr22:5715078-5714769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:234
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):36, 142

               
               
               Conread position:402-766
               
               
               Cow position:chr22:42421516-42421169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 15

               
               
               Conread position:434-766
               
               
               Cow position:chr22:41321561-41321892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 104

               
               
               Conread position:444-766
               
               
               Cow position:chr22:12537321-12536996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 14

               
               
               Conread position:447-766
               
               
               Cow position:chr22:4932160-4932481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):55, 81

               
               
               Conread position:460-766
               
               
               Cow position:chr22:44037465-44037762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 77

               
               
               Conread position:460-773
               
               
               Cow position:chr22:34087245-34086925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 78

               
               
               Conread position:497-701
               
               
               Cow position:chr22:45497031-45497242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):94, 40

               
               
               Conread position:501-706
               
               
               Cow position:chr22:23681049-23681258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):79, 36

               
               
               Conread position:505-758
               
               
               Cow position:chr22:5358649-5358900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):75, 32

               
               
               Conread position:513-742
               
               
               Cow position:chr22:12627941-12627713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:185
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):85, 24

               
               
               Conread position:521-766
               
               
               Cow position:chr22:11749215-11748985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):69, 5

               
               
               Conread position:527-761
               
               
               Cow position:chr22:22010648-22010413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:183
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):74, 47

               
               
               Conread position:536-756
               
               
               Cow position:chr22:18324592-18324369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):41, 116

               
               
               Conread position:536-766
               
               
               Cow position:chr22:13083385-13083602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):80, 61

               
               
               Conread position:536-769
               
               
               Cow position:chr22:39424304-39424534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:179
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):54, 84

               
               
               Conread position:539-766
               
               
               Cow position:chr22:44687298-44687538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 207

               
               
               Conread position:546-767
               
               
               Cow position:chr22:24435992-24435766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:181
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):50, 27

               
               
               Conread position:547-769
               
               
               Cow position:chr22:29004935-29004707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 172

               
               
               Conread position:580-761
               
               
               Cow position:chr22:40046478-40046655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:612-766
               
               
               Cow position:chr22:1533010-1533160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:626-767
               
               
               Cow position:chr22:45788037-45787898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):35, 93

               
               
               Conread position:155-766
               
               
               Cow position:chr23:16170697-16171319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 50

               
               
               Conread position:158-351
               
               
               Cow position:chr23:38026828-38026634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):88, 9

               
               
               Conread position:158-379
               
               
               Cow position:chr23:3715752-3715966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):53, 79

               
               
               Conread position:158-379
               
               
               Cow position:chr23:7955662-7955878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):77, 47

               
               
               Conread position:158-529
               
               
               Cow position:chr23:5265522-5265150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 78

               
               
               Conread position:158-545
               
               
               Cow position:chr23:7253059-7253466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 44

               
               
               Conread position:158-756
               
               
               Cow position:chr23:9546395-9546970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 52

               
               
               Conread position:158-766
               
               
               Cow position:chr23:25079189-25078609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 45

               
               
               Conread position:159-771
               
               
               Cow position:chr23:25408826-25409417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 15

               
               
               Conread position:161-379
               
               
               Cow position:chr23:7751192-7751409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):49, 73

               
               
               Conread position:166-335
               
               
               Cow position:chr23:8737833-8737662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):44, 70

               
               
               Conread position:166-725
               
               
               Cow position:chr23:23285121-23285647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 70

               
               
               Conread position:168-621
               
               
               Cow position:chr23:20216885-20217327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:320
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):84, 20

               
               
               Conread position:176-379
               
               
               Cow position:chr23:15054077-15054282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 10

               
               
               Conread position:183-414
               
               
               Cow position:chr23:15694376-15694601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):27, 53

               
               
               Conread position:193-378
               
               
               Cow position:chr23:29104250-29104062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):20, 43

               
               
               Conread position:194-340
               
               
               Cow position:chr23:23916611-23916760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:255-535
               
               
               Cow position:chr23:30127881-30127586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):130, 66

               
               
               Conread position:275-756
               
               
               Cow position:chr23:39070113-39069629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 117

               
               
               Conread position:292-764
               
               
               Cow position:chr23:36674645-36674181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 229

               
               
               Conread position:293-766
               
               
               Cow position:chr23:24401082-24400582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 129

               
               
               Conread position:333-765
               
               
               Cow position:chr23:23917038-23917474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 54

               
               
               Conread position:341-623
               
               
               Cow position:chr23:6964170-6963900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):63, 14

               
               
               Conread position:356-614
               
               
               Cow position:chr23:38026497-38026240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):37, 91

               
               
               Conread position:378-756
               
               
               Cow position:chr23:2784175-2783789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:259
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):20, 146

               
               
               Conread position:430-768
               
               
               Cow position:chr23:22605695-22605376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):73, 61

               
               
               Conread position:438-704
               
               
               Cow position:chr23:30302131-30301864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):10, 50

               
               
               Conread position:447-756
               
               
               Cow position:chr23:5258626-5258920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):58, 39

               
               
               Conread position:448-758
               
               
               Cow position:chr23:16479623-16479311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):53, 82

               
               
               Conread position:460-726
               
               
               Cow position:chr23:9654534-9654276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):132, 40

               
               
               Conread position:462-780
               
               
               Cow position:chr23:15147705-15147395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 72

               
               
               Conread position:471-766
               
               
               Cow position:chr23:39822771-39823063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):31, 60

               
               
               Conread position:500-758
               
               
               Cow position:chr23:36484087-36483842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:198
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):92, 37

               
               
               Conread position:501-769
               
               
               Cow position:chr23:30691687-30691425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:212
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):106, 36

               
               
               Conread position:505-763
               
               
               Cow position:chr23:34514547-34514293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):87, 28

               
               
               Conread position:523-710
               
               
               Cow position:chr23:15694259-15694063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):69, 172

               
               
               Conread position:534-758
               
               
               Cow position:chr23:2330410-2330192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):82, 32

               
               
               Conread position:536-726
               
               
               Cow position:chr23:7253593-7253776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:158
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):175, 48

               
               
               Conread position:536-755
               
               
               Cow position:chr23:32845651-32845433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):56, 97

               
               
               Conread position:536-763
               
               
               Cow position:chr23:1682438-1682664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:179
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):55, 27

               
               
               Conread position:537-758
               
               
               Cow position:chr23:35654687-35654463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):53, 30

               
               
               Conread position:540-768
               
               
               Cow position:chr23:32549365-32549140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):50, 112

               
               
               Conread position:544-766
               
               
               Cow position:chr23:20023841-20024067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):63, 141

               
               
               Conread position:547-766
               
               
               Cow position:chr23:9425831-9425608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 190

               
               
               Conread position:549-766
               
               
               Cow position:chr23:30127366-30127151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):42, 129

               
               
               Conread position:552-766
               
               
               Cow position:chr23:37036471-37036265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):40, 82

               
               
               Conread position:564-766
               
               
               Cow position:chr23:14572788-14573004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:567-769
               
               
               Cow position:chr23:14751996-14751803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):25, 40

               
               
               Conread position:571-754
               
               
               Cow position:chr23:7571272-7571082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):21, 96

               
               
               Conread position:601-766
               
               
               Cow position:chr23:9724012-9723852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:606-765
               
               
               Cow position:chr23:5265105-5264954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:610-767
               
               
               Cow position:chr23:6963730-6963581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:662-767
               
               
               Cow position:chr23:23058119-23058226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:91
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):64, 74

               
               
               Conread position:155-750
               
               
               Cow position:chr24:17763305-17762710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 55

               
               
               Conread position:157-739
               
               
               Cow position:chr24:25246000-25246580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 79

               
               
               Conread position:158-379
               
               
               Cow position:chr24:26846292-26846072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):55, 34

               
               
               Conread position:158-402
               
               
               Cow position:chr24:6665478-6665232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):56, 79

               
               
               Conread position:158-507
               
               
               Cow position:chr24:43492539-43492195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 78

               
               
               Conread position:158-530
               
               
               Cow position:chr24:7038727-7039102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):40, 100

               
               
               Conread position:158-622
               
               
               Cow position:chr24:19961545-19961087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 19

               
               
               Conread position:158-764
               
               
               Cow position:chr24:41405352-41404760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 79

               
               
               Conread position:158-766
               
               
               Cow position:chr24:42817224-42817838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 79

               
               
               Conread position:158-779
               
               
               Cow position:chr24:43351133-43350503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:647
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 76

               
               
               Conread position:159-392
               
               
               Cow position:chr24:19644635-19644866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):54, 132

               
               
               Conread position:159-416
               
               
               Cow position:chr24:36853288-36853550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:193
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):51, 71

               
               
               Conread position:160-752
               
               
               Cow position:chr24:37386379-37385809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 72

               
               
               Conread position:164-765
               
               
               Cow position:chr24:14913575-14913005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 57

               
               
               Conread position:166-311
               
               
               Cow position:chr24:35836272-35836128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):83, 38

               
               
               Conread position:166-494
               
               
               Cow position:chr24:19627302-19627636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:234
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):45, 62

               
               
               Conread position:168-755
               
               
               Cow position:chr24:6177370-6177964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 68

               
               
               Conread position:171-378
               
               
               Cow position:chr24:16476697-16476901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):42, 66

               
               
               Conread position:197-573
               
               
               Cow position:chr24:25343064-25343439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:273
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):15, 105

               
               
               Conread position:216-683
               
               
               Cow position:chr24:38643636-38644117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 20

               
               
               Conread position:229-766
               
               
               Cow position:chr24:6424018-6423499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 56

               
               
               Conread position:255-766
               
               
               Cow position:chr24:31301596-31301104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):304, 179

               
               
               Conread position:278-766
               
               
               Cow position:chr24:35835931-35835462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:334
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):115, 13

               
               
               Conread position:282-548
               
               
               Cow position:chr24:36551266-36550998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:196
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):157, 70

               
               
               Conread position:291-510
               
               
               Cow position:chr24:25934504-25934725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):129, 92

               
               
               Conread position:298-723
               
               
               Cow position:chr24:9867370-9866937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:299
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):95, 80

               
               
               Conread position:301-485
               
               
               Cow position:chr24:1296948-1296758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:314-758
               
               
               Cow position:chr24:32579301-32579740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 126

               
               
               Conread position:333-772
               
               
               Cow position:chr24:17417219-17417668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 207

               
               
               Conread position:334-632
               
               
               Cow position:chr24:15474835-15475130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):100, 48

               
               
               Conread position:352-622
               
               
               Cow position:chr24:22839454-22839176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:386-714
               
               
               Cow position:chr24:31845623-31845295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:225
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):64, 104

               
               
               Conread position:388-763
               
               
               Cow position:chr24:30899629-30899251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 10

               
               
               Conread position:398-724
               
               
               Cow position:chr24:30144335-30144648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):22, 47

               
               
               Conread position:418-766
               
               
               Cow position:chr24:36097695-36098043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:250
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):87, 120

               
               
               Conread position:433-709
               
               
               Cow position:chr24:36853602-36853867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):157, 53

               
               
               Conread position:452-766
               
               
               Cow position:chr24:33274123-33274428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 40

               
               
               Conread position:460-689
               
               
               Cow position:chr24:25966887-25967114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):131, 68

               
               
               Conread position:473-706
               
               
               Cow position:chr24:21714915-21714683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:186
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):26, 65

               
               
               Conread position:474-767
               
               
               Cow position:chr24:16552720-16552430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):109, 51

               
               
               Conread position:481-672
               
               
               Cow position:chr24:36098888-36098701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):24, 57

               
               
               Conread position:489-766
               
               
               Cow position:chr24:19627718-19628006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 29

               
               
               Conread position:505-767
               
               
               Cow position:chr24:43491392-43491132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):40, 35

               
               
               Conread position:507-758
               
               
               Cow position:chr24:1295946-1295697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 31

               
               
               Conread position:510-771
               
               
               Cow position:chr24:620882-621146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):81, 21

               
               
               Conread position:522-767
               
               
               Cow position:chr24:24124986-24125225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):15, 99

               
               
               Conread position:536-766
               
               
               Cow position:chr24:38146085-38145867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:540-761
               
               
               Cow position:chr24:23253632-23253407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):50, 76

               
               
               Conread position:546-766
               
               
               Cow position:chr24:25934908-25935144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):50, 46

               
               
               Conread position:546-766
               
               
               Cow position:chr24:44484042-44483826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):49, 12

               
               
               Conread position:547-767
               
               
               Cow position:chr24:3088969-3089203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):45, 166

               
               
               Conread position:547-769
               
               
               Cow position:chr24:28599018-28598796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):45, 27

               
               
               Conread position:548-780
               
               
               Cow position:chr24:42338736-42338974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:179
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):65, 189

               
               
               Conread position:605-766
               
               
               Cow position:chr24:39384533-39384373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:610-766
               
               
               Cow position:chr24:36550646-36550495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:653-766
               
               
               Cow position:chr24:15476623-15476735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 8

               
               
               Conread position:158-389
               
               
               Cow position:chr25:23842244-23842468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):223, 17

               
               
               Conread position:158-407
               
               
               Cow position:chr25:10013446-10013201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):54, 79

               
               
               Conread position:158-418
               
               
               Cow position:chr25:30035535-30035786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):53, 173

               
               
               Conread position:158-730
               
               
               Cow position:chr25:5567778-5567181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 80

               
               
               Conread position:159-379
               
               
               Cow position:chr25:34236590-34236370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):52, 77

               
               
               Conread position:160-418
               
               
               Cow position:chr25:14279252-14279509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 131

               
               
               Conread position:161-743
               
               
               Cow position:chr25:18206311-18205745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 13

               
               
               Conread position:163-398
               
               
               Cow position:chr25:17660249-17660489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):50, 38

               
               
               Conread position:166-766
               
               
               Cow position:chr25:16240602-16240027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 43

               
               
               Conread position:169-379
               
               
               Cow position:chr25:30614138-30614348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):44, 67

               
               
               Conread position:170-723
               
               
               Cow position:chr25:38358092-38358634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 67

               
               
               Conread position:174-418
               
               
               Cow position:chr25:35038637-35038393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):72, 55

               
               
               Conread position:176-428
               
               
               Cow position:chr25:18644071-18643813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:275-711
               
               
               Cow position:chr25:36235712-36235286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 66

               
               
               Conread position:310-673
               
               
               Cow position:chr25:33924839-33925203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):110, 161

               
               
               Conread position:326-693
               
               
               Cow position:chr25:16193379-16193010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 218

               
               
               Conread position:333-767
               
               
               Cow position:chr25:13123372-13123810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 208

               
               
               Conread position:334-766
               
               
               Cow position:chr25:23014320-23014742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 31

               
               
               Conread position:339-534
               
               
               Cow position:chr25:16429815-16429624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):164, 28

               
               
               Conread position:341-766
               
               
               Cow position:chr25:13704174-13704607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 127

               
               
               Conread position:358-765
               
               
               Cow position:chr25:19686567-19686157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 185

               
               
               Conread position:377-754
               
               
               Cow position:chr25:16940657-16940272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 125

               
               
               Conread position:381-771
               
               
               Cow position:chr25:17472872-17473257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 30

               
               
               Conread position:388-756
               
               
               Cow position:chr25:8618193-8617838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):16, 20

               
               
               Conread position:448-769
               
               
               Cow position:chr25:34159668-34159345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):55, 111

               
               
               Conread position:451-767
               
               
               Cow position:chr25:5377359-5377053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 87

               
               
               Conread position:454-766
               
               
               Cow position:chr25:14279730-14280029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 63

               
               
               Conread position:460-765
               
               
               Cow position:chr25:20180762-20181060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):43, 71

               
               
               Conread position:461-690
               
               
               Cow position:chr25:30036040-30036271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:187
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):42, 55

               
               
               Conread position:462-693
               
               
               Cow position:chr25:35038156-35037912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):75, 42

               
               
               Conread position:498-766
               
               
               Cow position:chr25:10010223-10009967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 39

               
               
               Conread position:500-766
               
               
               Cow position:chr25:40833103-40832838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:204
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):71, 27

               
               
               Conread position:530-765
               
               
               Cow position:chr25:13216132-13216365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):62, 43

               
               
               Conread position:531-754
               
               
               Cow position:chr25:20497150-20497367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):65, 61

               
               
               Conread position:536-765
               
               
               Cow position:chr25:33346002-33346221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):55, 122

               
               
               Conread position:547-761
               
               
               Cow position:chr25:20624173-20624392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):45, 192

               
               
               Conread position:556-757
               
               
               Cow position:chr25:9785670-9785461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):51, 189

               
               
               Conread position:556-766
               
               
               Cow position:chr25:16687730-16687516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):36, 117

               
               
               Conread position:559-765
               
               
               Cow position:chr25:8447842-8448046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):33, 94

               
               
               Conread position:565-766
               
               
               Cow position:chr25:15564576-15564777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:165
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):27, 82

               
               
               Conread position:608-766
               
               
               Cow position:chr25:20423308-20423467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):98, 11

               
               
               Conread position:635-768
               
               
               Cow position:chr25:3685712-3685579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):22, 41

               
               
               Conread position:155-758
               
               
               Cow position:chr26:15632488-15633082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 67

               
               
               Conread position:157-378
               
               
               Cow position:chr26:14364079-14363858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):53, 13

               
               
               Conread position:158-379
               
               
               Cow position:chr26:34032104-34032321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):53, 27

               
               
               Conread position:158-418
               
               
               Cow position:chr26:22161856-22161596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 13

               
               
               Conread position:158-502
               
               
               Cow position:chr26:15558511-15558846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:244
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):55, 72

               
               
               Conread position:158-765
               
               
               Cow position:chr26:21013352-21013971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 29

               
               
               Conread position:159-443
               
               
               Cow position:chr26:12069624-12069902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:211
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):52, 20

               
               
               Conread position:159-766
               
               
               Cow position:chr26:28421756-28421145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 75

               
               
               Conread position:159-766
               
               
               Cow position:chr26:30603097-30602498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 77

               
               
               Conread position:166-566
               
               
               Cow position:chr26:4560234-4559844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 13

               
               
               Conread position:175-466
               
               
               Cow position:chr26:12871412-12871715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):35, 77

               
               
               Conread position:191-757
               
               
               Cow position:chr26:14509810-14509246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 44

               
               
               Conread position:192-757
               
               
               Cow position:chr26:16214302-16214868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 45

               
               
               Conread position:209-390
               
               
               Cow position:chr26:15938895-15939075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 26

               
               
               Conread position:258-774
               
               
               Cow position:chr26:4663983-4663469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 59

               
               
               Conread position:281-418
               
               
               Cow position:chr26:34089809-34089942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:290-515
               
               
               Cow position:chr26:19492899-19493128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):98, 177

               
               
               Conread position:365-671
               
               
               Cow position:chr26:33214610-33214304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):58, 86

               
               
               Conread position:422-757
               
               
               Cow position:chr26:14081658-14081975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:240
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):81, 17

               
               
               Conread position:422-766
               
               
               Cow position:chr26:5718078-5717735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:254
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):72, 110

               
               
               Conread position:444-769
               
               
               Cow position:chr26:34037947-34037621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 94

               
               
               Conread position:460-727
               
               
               Cow position:chr26:6828290-6828557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 71

               
               
               Conread position:460-766
               
               
               Cow position:chr26:28864713-28864413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):43, 54

               
               
               Conread position:477-779
               
               
               Cow position:chr26:12872049-12872338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):22, 54

               
               
               Conread position:479-766
               
               
               Cow position:chr26:5196826-5197109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 26

               
               
               Conread position:492-766
               
               
               Cow position:chr26:19958177-19958454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 46

               
               
               Conread position:492-766
               
               
               Cow position:chr26:22161192-22160931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:536-769
               
               
               Cow position:chr26:4559839-4559613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):54, 73

               
               
               Conread position:539-775
               
               
               Cow position:chr26:2362420-2362650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):62, 5

               
               
               Conread position:540-755
               
               
               Cow position:chr26:14363714-14363499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:177
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):52, 40

               
               
               Conread position:542-766
               
               
               Cow position:chr26:30011399-30011180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:177
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):50, 61

               
               
               Conread position:546-766
               
               
               Cow position:chr26:1069057-1068831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):28, 136

               
               
               Conread position:556-764
               
               
               Cow position:chr26:19493133-19493344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:170
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:571-756
               
               
               Cow position:chr26:5794109-5794296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):48, 165

               
               
               Conread position:601-757
               
               
               Cow position:chr26:4798360-4798514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:610-756
               
               
               Cow position:chr26:13346119-13346261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:155-338
               
               
               Cow position:chr27:25676199-25676016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):5, 13

               
               
               Conread position:158-350
               
               
               Cow position:chr27:9184592-9184395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):45, 13

               
               
               Conread position:158-375
               
               
               Cow position:chr27:5530719-5530501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:168
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):56, 79

               
               
               Conread position:158-379
               
               
               Cow position:chr27:1142070-1142290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):56, 76

               
               
               Conread position:158-379
               
               
               Cow position:chr27:4007289-4007511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):53, 78

               
               
               Conread position:158-418
               
               
               Cow position:chr27:31237988-31238262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):51, 71

               
               
               Conread position:158-705
               
               
               Cow position:chr27:11935652-11935110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 54

               
               
               Conread position:158-766
               
               
               Cow position:chr27:3934717-3935351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 94

               
               
               Conread position:158-769
               
               
               Cow position:chr27:9261799-9261174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 79

               
               
               Conread position:160-767
               
               
               Cow position:chr27:30888932-30889530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 49

               
               
               Conread position:251-418
               
               
               Cow position:chr27:30738371-30738534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:255-766
               
               
               Cow position:chr27:26091533-26092052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 99

               
               
               Conread position:264-391
               
               
               Cow position:chr27:28105297-28105424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:294-766
               
               
               Cow position:chr27:13860777-13861212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 68

               
               
               Conread position:360-766
               
               
               Cow position:chr27:17564800-17564390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 38

               
               
               Conread position:378-667
               
               
               Cow position:chr27:11755728-11756010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):42, 15

               
               
               Conread position:386-766
               
               
               Cow position:chr27:23074037-23073643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:273
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):33, 115

               
               
               Conread position:387-757
               
               
               Cow position:chr27:4962404-4962759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:261
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):33, 120

               
               
               Conread position:418-671
               
               
               Cow position:chr27:6534354-6534604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 94

               
               
               Conread position:422-756
               
               
               Cow position:chr27:2246694-2246372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 118

               
               
               Conread position:425-758
               
               
               Cow position:chr27:18589439-18589115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 18

               
               
               Conread position:444-766
               
               
               Cow position:chr27:11021436-11021128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 43

               
               
               Conread position:447-753
               
               
               Cow position:chr27:4449649-4449938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):145, 40

               
               
               Conread position:450-754
               
               
               Cow position:chr27:16100024-16100317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):11, 68

               
               
               Conread position:457-752
               
               
               Cow position:chr27:1540613-1540881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):49, 77

               
               
               Conread position:460-768
               
               
               Cow position:chr27:18057167-18056860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 81

               
               
               Conread position:473-744
               
               
               Cow position:chr27:15211414-15211136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 65

               
               
               Conread position:500-766
               
               
               Cow position:chr27:7860140-7860405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:209
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:536-719
               
               
               Cow position:chr27:12547773-12547963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:536-766
               
               
               Cow position:chr27:18179082-18179316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:183
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):54, 118

               
               
               Conread position:536-772
               
               
               Cow position:chr27:28292964-28292732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):54, 71

               
               
               Conread position:541-766
               
               
               Cow position:chr27:4921868-4922096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:179
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):51, 26

               
               
               Conread position:542-755
               
               
               Cow position:chr27:5531311-5531514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):49, 24

               
               
               Conread position:544-761
               
               
               Cow position:chr27:31376184-31375969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):46, 122

               
               
               Conread position:545-767
               
               
               Cow position:chr27:31524120-31523897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):46, 120

               
               
               Conread position:546-766
               
               
               Cow position:chr27:18573478-18573254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):46, 20

               
               
               Conread position:548-773
               
               
               Cow position:chr27:18546497-18546280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:581-764
               
               
               Cow position:chr27:12000117-12000307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):11, 159

               
               
               Conread position:610-766
               
               
               Cow position:chr27:23966302-23966146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):77, 124

               
               
               Conread position:611-763
               
               
               Cow position:chr27:7183796-7183947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:618-767
               
               
               Cow position:chr27:14881378-14881526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):75, 116

               
               
               Conread position:652-766
               
               
               Cow position:chr27:18780190-18780077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:92
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:157-390
               
               
               Cow position:chr28:21940183-21940404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):55, 16

               
               
               Conread position:157-418
               
               
               Cow position:chr28:7607228-7607483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):97, 78

               
               
               Conread position:157-611
               
               
               Cow position:chr28:22855289-22855718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:320
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):95, 17

               
               
               Conread position:158-338
               
               
               Cow position:chr28:26627151-26626969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):53, 79

               
               
               Conread position:158-352
               
               
               Cow position:chr28:13936391-13936594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):52, 72

               
               
               Conread position:158-378
               
               
               Cow position:chr28:20265394-20265616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):55, 78

               
               
               Conread position:158-379
               
               
               Cow position:chr28:34636660-34636878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):97, 66

               
               
               Conread position:158-381
               
               
               Cow position:chr28:16466616-16466834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):53, 78

               
               
               Conread position:158-417
               
               
               Cow position:chr28:6277554-6277295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):93, 51

               
               
               Conread position:158-515
               
               
               Cow position:chr28:22829918-22830282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 78

               
               
               Conread position:158-767
               
               
               Cow position:chr28:2340530-2341140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 69

               
               
               Conread position:159-332
               
               
               Cow position:chr28:6486589-6486763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):54, 77

               
               
               Conread position:161-303
               
               
               Cow position:chr28:11380044-11379900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):48, 69

               
               
               Conread position:163-390
               
               
               Cow position:chr28:19961865-19962092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):47, 73

               
               
               Conread position:164-381
               
               
               Cow position:chr28:3068921-3069143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):42, 19

               
               
               Conread position:166-768
               
               
               Cow position:chr28:22613921-22614498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 47

               
               
               Conread position:167-418
               
               
               Cow position:chr28:15915248-15914996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 69

               
               
               Conread position:167-766
               
               
               Cow position:chr28:34347248-34346654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 69

               
               
               Conread position:168-766
               
               
               Cow position:chr28:28630576-28631164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 68

               
               
               Conread position:209-767
               
               
               Cow position:chr28:34117134-34117695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 7

               
               
               Conread position:210-535
               
               
               Cow position:chr28:22360681-22361019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 25

               
               
               Conread position:261-668
               
               
               Cow position:chr28:23390430-23390839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 22

               
               
               Conread position:308-765
               
               
               Cow position:chr28:15349605-15350053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 190

               
               
               Conread position:314-656
               
               
               Cow position:chr28:11379660-11379291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):72, 34

               
               
               Conread position:337-708
               
               
               Cow position:chr28:24468205-24468592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 178

               
               
               Conread position:356-766
               
               
               Cow position:chr28:26626978-26626588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 19

               
               
               Conread position:374-727
               
               
               Cow position:chr28:32284789-32284434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):49, 22

               
               
               Conread position:378-754
               
               
               Cow position:chr28:22202045-22202404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):65, 33

               
               
               Conread position:378-758
               
               
               Cow position:chr28:17762558-17762951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):11, 116

               
               
               Conread position:406-766
               
               
               Cow position:chr28:5912600-5912241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 115

               
               
               Conread position:418-726
               
               
               Cow position:chr28:6355332-6355634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):32, 24

               
               
               Conread position:418-766
               
               
               Cow position:chr28:31994392-31994031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 20

               
               
               Conread position:428-674
               
               
               Cow position:chr28:17482669-17482440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):13, 7

               
               
               Conread position:440-769
               
               
               Cow position:chr28:7799909-7799597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):61, 46

               
               
               Conread position:460-659
               
               
               Cow position:chr28:6277219-6277022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 71

               
               
               Conread position:460-758
               
               
               Cow position:chr28:4803160-4802877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):15, 10

               
               
               Conread position:461-758
               
               
               Cow position:chr28:10647791-10647495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):6, 78

               
               
               Conread position:498-766
               
               
               Cow position:chr28:8172909-8172661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):6, 40

               
               
               Conread position:500-779
               
               
               Cow position:chr28:3898382-3898650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):92, 33

               
               
               Conread position:502-780
               
               
               Cow position:chr28:20095215-20095502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):94, 38

               
               
               Conread position:534-766
               
               
               Cow position:chr28:16251889-16251658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 86

               
               
               Conread position:538-765
               
               
               Cow position:chr28:7592569-7592790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):22, 80

               
               
               Conread position:545-766
               
               
               Cow position:chr28:6103091-6103313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):57, 20

               
               
               Conread position:556-766
               
               
               Cow position:chr28:25926709-25926924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:171
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):34, 167

               
               
               Conread position:568-766
               
               
               Cow position:chr28:22361028-22361228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):24, 95

               
               
               Conread position:605-766
               
               
               Cow position:chr28:11284090-11283929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):116, 130

               
               
               Conread position:612-766
               
               
               Cow position:chr28:11379255-11379105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:624-766
               
               
               Cow position:chr28:27890324-27890181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:628-766
               
               
               Cow position:chr28:22339894-22340028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):16, 10

               
               
               Conread position:631-766
               
               
               Cow position:chr28:16241230-16241096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:631-766
               
               
               Cow position:chr28:22831051-22831185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:636-766
               
               
               Cow position:chr28:12384495-12384624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:98
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:648-763
               
               
               Cow position:chr28:16804785-16804671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:648-766
               
               
               Cow position:chr28:34338241-34338358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:156-379
               
               
               Cow position:chr29:9512860-9513070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):53, 74

               
               
               Conread position:157-379
               
               
               Cow position:chr29:134162-134382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):68, 96

               
               
               Conread position:157-401
               
               
               Cow position:chr29:798411-798165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):64, 48

               
               
               Conread position:157-756
               
               
               Cow position:chr29:21198663-21198041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 79

               
               
               Conread position:157-766
               
               
               Cow position:chr29:18338555-18337954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 96

               
               
               Conread position:158-379
               
               
               Cow position:chr29:13653222-13653430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):54, 78

               
               
               Conread position:158-414
               
               
               Cow position:chr29:17339315-17339062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):89, 47

               
               
               Conread position:158-442
               
               
               Cow position:chr29:30921694-30921410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 66

               
               
               Conread position:158-529
               
               
               Cow position:chr29:28115079-28115453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):13, 54

               
               
               Conread position:158-590
               
               
               Cow position:chr29:37207750-37208184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 72

               
               
               Conread position:158-765
               
               
               Cow position:chr29:2481351-2480755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 16

               
               
               Conread position:158-766
               
               
               Cow position:chr29:35036722-35037326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 79

               
               
               Conread position:159-756
               
               
               Cow position:chr29:16359608-16360205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 77

               
               
               Conread position:160-764
               
               
               Cow position:chr29:8906519-8907117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 70

               
               
               Conread position:164-376
               
               
               Cow position:chr29:17965956-17966168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):46, 66

               
               
               Conread position:166-366
               
               
               Cow position:chr29:42268691-42268893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):45, 70

               
               
               Conread position:167-631
               
               
               Cow position:chr29:13040537-13040089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 68

               
               
               Conread position:168-723
               
               
               Cow position:chr29:19931332-19931886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 38

               
               
               Conread position:176-699
               
               
               Cow position:chr29:22454817-22454297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 29

               
               
               Conread position:256-767
               
               
               Cow position:chr29:7738610-7738097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 65

               
               
               Conread position:273-581
               
               
               Cow position:chr29:30813544-30813850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 260

               
               
               Conread position:276-708
               
               
               Cow position:chr29:4458699-4459135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 39

               
               
               Conread position:291-666
               
               
               Cow position:chr29:478256-478614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:265
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):63, 50

               
               
               Conread position:338-766
               
               
               Cow position:chr29:3346133-3346554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 101

               
               
               Conread position:345-681
               
               
               Cow position:chr29:42269099-42269450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):18, 92

               
               
               Conread position:371-603
               
               
               Cow position:chr29:26940165-26940392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):19, 28

               
               
               Conread position:380-767
               
               
               Cow position:chr29:23988701-23989094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 20

               
               
               Conread position:386-674
               
               
               Cow position:chr29:2848205-2847912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):7, 11

               
               
               Conread position:386-766
               
               
               Cow position:chr29:8891042-8890665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 106

               
               
               Conread position:404-685
               
               
               Cow position:chr29:7959589-7959313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):16, 47

               
               
               Conread position:418-758
               
               
               Cow position:chr29:30921150-30920791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):15, 337

               
               
               Conread position:444-758
               
               
               Cow position:chr29:23823207-23822918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:447-766
               
               
               Cow position:chr29:34330958-34330630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):56, 84

               
               
               Conread position:460-766
               
               
               Cow position:chr29:794888-795194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:232
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):43, 79

               
               
               Conread position:493-766
               
               
               Cow position:chr29:12193491-12193756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):17, 45

               
               
               Conread position:496-756
               
               
               Cow position:chr29:7892634-7892374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 43

               
               
               Conread position:511-677
               
               
               Cow position:chr29:5174331-5174498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):81, 18

               
               
               Conread position:536-758
               
               
               Cow position:chr29:22655570-22655354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):56, 30

               
               
               Conread position:536-764
               
               
               Cow position:chr29:682167-681948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 33

               
               
               Conread position:536-765
               
               
               Cow position:chr29:34392164-34392401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:182
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):56, 35

               
               
               Conread position:539-765
               
               
               Cow position:chr29:3822898-3823140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):69, 52

               
               
               Conread position:540-766
               
               
               Cow position:chr29:44028164-44028388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):71, 155

               
               
               Conread position:548-764
               
               
               Cow position:chr29:18361309-18361097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:168
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):38, 23

               
               
               Conread position:549-732
               
               
               Cow position:chr29:8685372-8685558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):43, 69

               
               
               Conread position:550-766
               
               
               Cow position:chr29:1711421-1711635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):61, 19

               
               
               Conread position:552-732
               
               
               Cow position:chr29:43962906-43962731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):64, 15

               
               
               Conread position:555-767
               
               
               Cow position:chr29:849459-849679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):32, 16

               
               
               Conread position:566-756
               
               
               Cow position:chr29:30814075-30814266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):26, 151

               
               
               Conread position:599-768
               
               
               Cow position:chr29:40091691-40091522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):161, 134

               
               
               Conread position:612-758
               
               
               Cow position:chr29:38386857-38387001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:612-761
               
               
               Cow position:chr29:13653901-13654046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:623-766
               
               
               Cow position:chr29:38333931-38334075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):52, 112

               
               
               Conread position:650-766
               
               
               Cow position:chr29:42269674-42269790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):108, 83

               
               
               Conread position:154-767
               
               
               Cow position:chr3:77467899-77468530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:648
               
               
               Alignm identity:464
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 34

               
               
               Conread position:157-379
               
               
               Cow position:chr3:32839984-32839765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):55, 33

               
               
               Conread position:157-401
               
               
               Cow position:chr3:27347364-27347123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):48, 30

               
               
               Conread position:157-560
               
               
               Cow position:chr3:56711676-56711273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 77

               
               
               Conread position:157-732
               
               
               Cow position:chr3:3690760-3690169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 81

               
               
               Conread position:158-379
               
               
               Cow position:chr3:42489337-42489114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):53, 76

               
               
               Conread position:158-379
               
               
               Cow position:chr3:42594688-42594465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):55, 78

               
               
               Conread position:158-379
               
               
               Cow position:chr3:64688238-64688017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):55, 78

               
               
               Conread position:158-379
               
               
               Cow position:chr3:77449022-77449245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):53, 78

               
               
               Conread position:158-379
               
               
               Cow position:chr3:80084211-80083991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):55, 18

               
               
               Conread position:158-410
               
               
               Cow position:chr3:74849087-74848836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):56, 228

               
               
               Conread position:158-535
               
               
               Cow position:chr3:31287149-31286786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:262
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):54, 40

               
               
               Conread position:158-542
               
               
               Cow position:chr3:45735104-45735477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:268
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):52, 32

               
               
               Conread position:158-589
               
               
               Cow position:chr3:55460532-55460108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 62

               
               
               Conread position:158-641
               
               
               Cow position:chr3:77157293-77157756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 72

               
               
               Conread position:158-758
               
               
               Cow position:chr3:27634047-27633443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 69

               
               
               Conread position:158-758
               
               
               Cow position:chr3:32773175-32773754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 78

               
               
               Conread position:158-766
               
               
               Cow position:chr3:8753424-8754024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 76

               
               
               Conread position:158-766
               
               
               Cow position:chr3:24531789-24532391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 64

               
               
               Conread position:158-766
               
               
               Cow position:chr3:60854886-60854275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 24

               
               
               Conread position:159-416
               
               
               Cow position:chr3:19689680-19689425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 77

               
               
               Conread position:159-485
               
               
               Cow position:chr3:16115546-16115862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 74

               
               
               Conread position:159-485
               
               
               Cow position:chr3:80928976-80928637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 77

               
               
               Conread position:160-381
               
               
               Cow position:chr3:35511752-35511973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):52, 27

               
               
               Conread position:160-767
               
               
               Cow position:chr3:23478193-23478801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 77

               
               
               Conread position:163-353
               
               
               Cow position:chr3:64018689-64018881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):50, 73

               
               
               Conread position:166-329
               
               
               Cow position:chr3:67044124-67043962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):44, 21

               
               
               Conread position:176-563
               
               
               Cow position:chr3:36538956-36538559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 60

               
               
               Conread position:177-376
               
               
               Cow position:chr3:60174503-60174305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):33, 59

               
               
               Conread position:209-766
               
               
               Cow position:chr3:56042706-56042159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 26

               
               
               Conread position:215-766
               
               
               Cow position:chr3:1549301-1549880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 20

               
               
               Conread position:235-418
               
               
               Cow position:chr3:24356790-24356968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):17, 106

               
               
               Conread position:243-685
               
               
               Cow position:chr3:85085911-85086336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:311
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):177, 11

               
               
               Conread position:276-757
               
               
               Cow position:chr3:21332723-21332259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 89

               
               
               Conread position:290-769
               
               
               Cow position:chr3:26581974-26581498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 94

               
               
               Conread position:308-616
               
               
               Cow position:chr3:8275553-8275863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):44, 79

               
               
               Conread position:346-753
               
               
               Cow position:chr3:43967273-43966865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 202

               
               
               Conread position:350-693
               
               
               Cow position:chr3:84153453-84153803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):36, 192

               
               
               Conread position:360-758
               
               
               Cow position:chr3:23274814-23274410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 138

               
               
               Conread position:363-758
               
               
               Cow position:chr3:17519635-17519236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 20

               
               
               Conread position:370-753
               
               
               Cow position:chr3:79315353-79315731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 13

               
               
               Conread position:373-703
               
               
               Cow position:chr3:47497704-47498023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 10

               
               
               Conread position:377-765
               
               
               Cow position:chr3:50499757-50500126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:277
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):47, 132

               
               
               Conread position:387-768
               
               
               Cow position:chr3:35029230-35028835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:262
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):61, 146

               
               
               Conread position:387-769
               
               
               Cow position:chr3:55107225-55106847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 51

               
               
               Conread position:393-766
               
               
               Cow position:chr3:60948001-60947628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 122

               
               
               Conread position:395-765
               
               
               Cow position:chr3:12311271-12311646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 98

               
               
               Conread position:396-766
               
               
               Cow position:chr3:74846531-74846154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 8

               
               
               Conread position:405-750
               
               
               Cow position:chr3:15329516-15329187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):72, 92

               
               
               Conread position:408-766
               
               
               Cow position:chr3:5084907-5084575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:258
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):70, 9

               
               
               Conread position:418-754
               
               
               Cow position:chr3:16056517-16056175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:239
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):85, 114

               
               
               Conread position:425-764
               
               
               Cow position:chr3:68127327-68127655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 20

               
               
               Conread position:427-766
               
               
               Cow position:chr3:12531882-12531548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 52

               
               
               Conread position:431-695
               
               
               Cow position:chr3:65392296-65392567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):68, 61

               
               
               Conread position:434-755
               
               
               Cow position:chr3:15091127-15091424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):69, 21

               
               
               Conread position:440-690
               
               
               Cow position:chr3:56164008-56164259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 96

               
               
               Conread position:449-758
               
               
               Cow position:chr3:41861087-41860801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):291, 68

               
               
               Conread position:451-766
               
               
               Cow position:chr3:27347108-27346794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 86

               
               
               Conread position:452-765
               
               
               Cow position:chr3:45641761-45642061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):7, 87

               
               
               Conread position:460-766
               
               
               Cow position:chr3:22054358-22054067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 28

               
               
               Conread position:460-766
               
               
               Cow position:chr3:54329084-54328791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):42, 78

               
               
               Conread position:461-757
               
               
               Cow position:chr3:78442625-78442326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 79

               
               
               Conread position:463-761
               
               
               Cow position:chr3:82543786-82544069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):127, 53

               
               
               Conread position:465-771
               
               
               Cow position:chr3:2284957-2285257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 74

               
               
               Conread position:466-766
               
               
               Cow position:chr3:13526904-13527179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 29

               
               
               Conread position:473-714
               
               
               Cow position:chr3:58348757-58348992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):116, 29

               
               
               Conread position:474-766
               
               
               Cow position:chr3:39385822-39385541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):29, 57

               
               
               Conread position:474-766
               
               
               Cow position:chr3:64081743-64082024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):30, 57

               
               
               Conread position:478-689
               
               
               Cow position:chr3:73418335-73418547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):25, 59

               
               
               Conread position:479-766
               
               
               Cow position:chr3:36515063-36514793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):24, 58

               
               
               Conread position:495-758
               
               
               Cow position:chr3:34165352-34165092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):8, 43

               
               
               Conread position:499-696
               
               
               Cow position:chr3:32513809-32513617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):91, 38

               
               
               Conread position:500-766
               
               
               Cow position:chr3:73154261-73154517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:205
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):92, 24

               
               
               Conread position:501-714
               
               
               Cow position:chr3:6798690-6798481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:171
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):90, 36

               
               
               Conread position:504-767
               
               
               Cow position:chr3:43004497-43004234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 33

               
               
               Conread position:505-685
               
               
               Cow position:chr3:81919605-81919426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):91, 20

               
               
               Conread position:506-766
               
               
               Cow position:chr3:77589704-77589953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 31

               
               
               Conread position:509-766
               
               
               Cow position:chr3:63334396-63334141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):8, 29

               
               
               Conread position:522-765
               
               
               Cow position:chr3:31528160-31528391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):70, 33

               
               
               Conread position:523-764
               
               
               Cow position:chr3:74724118-74723871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 13

               
               
               Conread position:535-766
               
               
               Cow position:chr3:1339238-1339472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 200

               
               
               Conread position:537-749
               
               
               Cow position:chr3:52657833-52658046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):53, 6

               
               
               Conread position:538-758
               
               
               Cow position:chr3:62812640-62812423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):10, 32

               
               
               Conread position:539-764
               
               
               Cow position:chr3:52817339-52817569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:176
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):53, 200

               
               
               Conread position:550-758
               
               
               Cow position:chr3:31286552-31286344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):42, 19

               
               
               Conread position:552-758
               
               
               Cow position:chr3:21282788-21282992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):39, 22

               
               
               Conread position:555-701
               
               
               Cow position:chr3:27879575-27879423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:558-757
               
               
               Cow position:chr3:83760942-83760747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):54, 42

               
               
               Conread position:561-725
               
               
               Cow position:chr3:5545316-5545481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):31, 127

               
               
               Conread position:564-766
               
               
               Cow position:chr3:45735538-45735746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):17, 170

               
               
               Conread position:571-748
               
               
               Cow position:chr3:69148172-69147991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):19, 11

               
               
               Conread position:573-768
               
               
               Cow position:chr3:28707322-28707515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):34, 11

               
               
               Conread position:608-756
               
               
               Cow position:chr3:83393120-83392971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):16, 127

               
               
               Conread position:608-757
               
               
               Cow position:chr3:74436321-74436469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:608-766
               
               
               Cow position:chr3:49414336-49414182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:610-766
               
               
               Cow position:chr3:36538483-36538322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):69, 129

               
               
               Conread position:611-766
               
               
               Cow position:chr3:5317346-5317193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:634-765
               
               
               Cow position:chr3:77158833-77158963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):126, 99

               
               
               Conread position:155-501
               
               
               Cow position:chr4:8597716-8597360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 82

               
               
               Conread position:157-428
               
               
               Cow position:chr4:52597498-52597215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:157-535
               
               
               Cow position:chr4:58833238-58832855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 72

               
               
               Conread position:157-766
               
               
               Cow position:chr4:34043647-34043014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:644
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 56

               
               
               Conread position:158-312
               
               
               Cow position:chr4:58433238-58433083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):51, 72

               
               
               Conread position:158-379
               
               
               Cow position:chr4:3133239-3133456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):52, 76

               
               
               Conread position:158-379
               
               
               Cow position:chr4:9649985-9650208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):52, 45

               
               
               Conread position:158-463
               
               
               Cow position:chr4:32749180-32749513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):54, 78

               
               
               Conread position:158-667
               
               
               Cow position:chr4:14564936-14564435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 79

               
               
               Conread position:158-756
               
               
               Cow position:chr4:49741528-49742134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 51

               
               
               Conread position:158-766
               
               
               Cow position:chr4:39646654-39647241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 47

               
               
               Conread position:159-340
               
               
               Cow position:chr4:5623219-5623039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):50, 71

               
               
               Conread position:159-411
               
               
               Cow position:chr4:57652221-57652471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 78

               
               
               Conread position:159-419
               
               
               Cow position:chr4:45114623-45114371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):95, 54

               
               
               Conread position:159-510
               
               
               Cow position:chr4:31586844-31586487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 74

               
               
               Conread position:159-528
               
               
               Cow position:chr4:29222542-29222164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 60

               
               
               Conread position:159-732
               
               
               Cow position:chr4:47511003-47511582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 77

               
               
               Conread position:159-767
               
               
               Cow position:chr4:9822129-9822734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 77

               
               
               Conread position:159-769
               
               
               Cow position:chr4:41975735-41975134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 77

               
               
               Conread position:160-378
               
               
               Cow position:chr4:61171888-61172102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):53, 43

               
               
               Conread position:160-766
               
               
               Cow position:chr4:5189029-5188422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 33

               
               
               Conread position:161-417
               
               
               Cow position:chr4:41895634-41895889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):56, 11

               
               
               Conread position:161-535
               
               
               Cow position:chr4:17176132-17176504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 52

               
               
               Conread position:161-754
               
               
               Cow position:chr4:29067660-29067080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 21

               
               
               Conread position:163-378
               
               
               Cow position:chr4:53763139-53762921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):47, 73

               
               
               Conread position:166-385
               
               
               Cow position:chr4:6630302-6630087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):45, 39

               
               
               Conread position:179-335
               
               
               Cow position:chr4:57566486-57566330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):34, 57

               
               
               Conread position:179-686
               
               
               Cow position:chr4:20925981-20925509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 57

               
               
               Conread position:187-396
               
               
               Cow position:chr4:5777044-5776839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):26, 49

               
               
               Conread position:191-371
               
               
               Cow position:chr4:58856740-58856560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:200-626
               
               
               Cow position:chr4:59565556-59565993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 35

               
               
               Conread position:209-528
               
               
               Cow position:chr4:4300561-4300890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):45, 26

               
               
               Conread position:212-765
               
               
               Cow position:chr4:53641356-53641896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 23

               
               
               Conread position:240-766
               
               
               Cow position:chr4:57222159-57221631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 6

               
               
               Conread position:256-535
               
               
               Cow position:chr4:27443911-27444201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:262-761
               
               
               Cow position:chr4:60159627-60159132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:338
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):72, 42

               
               
               Conread position:275-495
               
               
               Cow position:chr4:51905262-51905481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):119, 164

               
               
               Conread position:276-620
               
               
               Cow position:chr4:6793459-6793801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):109, 47

               
               
               Conread position:276-696
               
               
               Cow position:chr4:46875425-46874985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 132

               
               
               Conread position:330-766
               
               
               Cow position:chr4:57566061-57565637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 92

               
               
               Conread position:333-666
               
               
               Cow position:chr4:2238087-2237750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:251
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):52, 103

               
               
               Conread position:338-723
               
               
               Cow position:chr4:21162796-21163193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 217

               
               
               Conread position:343-754
               
               
               Cow position:chr4:60662565-60662968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:291
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):39, 185

               
               
               Conread position:345-767
               
               
               Cow position:chr4:58432803-58432379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 149

               
               
               Conread position:346-754
               
               
               Cow position:chr4:60640041-60639641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:288
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):36, 182

               
               
               Conread position:388-641
               
               
               Cow position:chr4:45113064-45112822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):29, 12

               
               
               Conread position:388-756
               
               
               Cow position:chr4:58873462-58873817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):30, 52

               
               
               Conread position:400-616
               
               
               Cow position:chr4:22891906-22891694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):127, 19

               
               
               Conread position:409-603
               
               
               Cow position:chr4:13926430-13926240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):90, 55

               
               
               Conread position:417-767
               
               
               Cow position:chr4:5783969-5784300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 119

               
               
               Conread position:418-714
               
               
               Cow position:chr4:68107118-68106829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):86, 10

               
               
               Conread position:418-766
               
               
               Cow position:chr4:36759509-36759871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 125

               
               
               Conread position:422-756
               
               
               Cow position:chr4:58856265-58855942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:242
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):77, 9

               
               
               Conread position:428-665
               
               
               Cow position:chr4:24713407-24713166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:192
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):74, 19

               
               
               Conread position:431-758
               
               
               Cow position:chr4:15046119-15046460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 85

               
               
               Conread position:431-758
               
               
               Cow position:chr4:20311926-20312245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):68, 97

               
               
               Conread position:438-657
               
               
               Cow position:chr4:27228723-27228951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):64, 54

               
               
               Conread position:439-748
               
               
               Cow position:chr4:22507120-22506817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 99

               
               
               Conread position:442-766
               
               
               Cow position:chr4:2443629-2443311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 22

               
               
               Conread position:447-758
               
               
               Cow position:chr4:34572261-34571952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:231
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):55, 17

               
               
               Conread position:460-733
               
               
               Cow position:chr4:15283467-15283733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):43, 79

               
               
               Conread position:461-715
               
               
               Cow position:chr4:47087129-47086880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):16, 78

               
               
               Conread position:461-766
               
               
               Cow position:chr4:31003075-31002770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 70

               
               
               Conread position:461-766
               
               
               Cow position:chr4:57652493-57652802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 76

               
               
               Conread position:468-765
               
               
               Cow position:chr4:49881720-49881409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 235

               
               
               Conread position:474-766
               
               
               Cow position:chr4:6630024-6629745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:220
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):30, 18

               
               
               Conread position:477-780
               
               
               Cow position:chr4:25924661-25924362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 61

               
               
               Conread position:479-744
               
               
               Cow position:chr4:7655072-7655337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):23, 46

               
               
               Conread position:479-752
               
               
               Cow position:chr4:32140968-32140704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):25, 48

               
               
               Conread position:483-679
               
               
               Cow position:chr4:51905574-51905773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):21, 55

               
               
               Conread position:492-703
               
               
               Cow position:chr4:62407473-62407678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):12, 46

               
               
               Conread position:497-758
               
               
               Cow position:chr4:31586280-31586028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:198
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):106, 40

               
               
               Conread position:497-765
               
               
               Cow position:chr4:5886658-5886919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:503-713
               
               
               Cow position:chr4:54347527-54347738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):104, 33

               
               
               Conread position:508-717
               
               
               Cow position:chr4:9089751-9089540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):68, 31

               
               
               Conread position:511-762
               
               
               Cow position:chr4:4519485-4519730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):83, 23

               
               
               Conread position:536-684
               
               
               Cow position:chr4:63875730-63875584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):53, 64

               
               
               Conread position:536-766
               
               
               Cow position:chr4:45401009-45401233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:536-766
               
               
               Cow position:chr4:52697229-52697454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):56, 19

               
               
               Conread position:538-724
               
               
               Cow position:chr4:4192555-4192741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):68, 12

               
               
               Conread position:540-732
               
               
               Cow position:chr4:27444403-27444603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):50, 150

               
               
               Conread position:540-766
               
               
               Cow position:chr4:58830505-58830292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):52, 10

               
               
               Conread position:545-766
               
               
               Cow position:chr4:59809589-59809372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):45, 120

               
               
               Conread position:547-742
               
               
               Cow position:chr4:4029191-4029392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):62, 193

               
               
               Conread position:559-762
               
               
               Cow position:chr4:52597181-52596967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):33, 186

               
               
               Conread position:608-758
               
               
               Cow position:chr4:23536416-23536564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:608-769
               
               
               Cow position:chr4:22891669-22891512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:610-754
               
               
               Cow position:chr4:6793918-6794058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:629-748
               
               
               Cow position:chr4:17177975-17178093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:144-379
               
               
               Cow position:chr5:27175863-27176099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):16, 69

               
               
               Conread position:157-379
               
               
               Cow position:chr5:61030209-61029986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):54, 153

               
               
               Conread position:157-391
               
               
               Cow position:chr5:23753205-23752971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):53, 80

               
               
               Conread position:157-400
               
               
               Cow position:chr5:25927683-25927441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 80

               
               
               Conread position:157-480
               
               
               Cow position:chr5:10786224-10785882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:241
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):55, 79

               
               
               Conread position:157-766
               
               
               Cow position:chr5:21146217-21145609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:464
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 69

               
               
               Conread position:158-727
               
               
               Cow position:chr5:60968422-60969018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 78

               
               
               Conread position:158-765
               
               
               Cow position:chr5:1305218-1304612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 18

               
               
               Conread position:158-766
               
               
               Cow position:chr5:23234481-23235077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 79

               
               
               Conread position:158-766
               
               
               Cow position:chr5:26562172-26562752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):265, 29

               
               
               Conread position:158-766
               
               
               Cow position:chr5:37048065-37048659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 68

               
               
               Conread position:159-325
               
               
               Cow position:chr5:37425758-37425926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):51, 77

               
               
               Conread position:159-372
               
               
               Cow position:chr5:48224567-48224352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):53, 77

               
               
               Conread position:159-378
               
               
               Cow position:chr5:63160060-63160284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:159-742
               
               
               Cow position:chr5:34483518-34482958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 77

               
               
               Conread position:159-758
               
               
               Cow position:chr5:51076629-51076015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 77

               
               
               Conread position:160-758
               
               
               Cow position:chr5:45912280-45911705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 11

               
               
               Conread position:162-377
               
               
               Cow position:chr5:364575-364359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):49, 74

               
               
               Conread position:162-742
               
               
               Cow position:chr5:15882446-15881859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 25

               
               
               Conread position:166-766
               
               
               Cow position:chr5:29431615-29431053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 43

               
               
               Conread position:167-390
               
               
               Cow position:chr5:19300409-19300196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):43, 69

               
               
               Conread position:168-379
               
               
               Cow position:chr5:70128165-70128374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):42, 62

               
               
               Conread position:169-766
               
               
               Cow position:chr5:39118215-39118761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 38

               
               
               Conread position:171-507
               
               
               Cow position:chr5:54156727-54157065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:247
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):41, 27

               
               
               Conread position:194-769
               
               
               Cow position:chr5:26098636-26098069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 42

               
               
               Conread position:209-766
               
               
               Cow position:chr5:27492761-27493351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 26

               
               
               Conread position:216-690
               
               
               Cow position:chr5:57127517-57127993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 20

               
               
               Conread position:255-501
               
               
               Cow position:chr5:21166947-21166694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):165, 142

               
               
               Conread position:255-567
               
               
               Cow position:chr5:9233270-9232959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:227
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):108, 142

               
               
               Conread position:264-493
               
               
               Cow position:chr5:62863951-62863736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):133, 21

               
               
               Conread position:275-766
               
               
               Cow position:chr5:56741792-56742289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 100

               
               
               Conread position:291-510
               
               
               Cow position:chr5:60725183-60725399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):106, 148

               
               
               Conread position:291-765
               
               
               Cow position:chr5:10455506-10455953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 17

               
               
               Conread position:315-765
               
               
               Cow position:chr5:9585567-9585135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:313
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):277, 63

               
               
               Conread position:322-592
               
               
               Cow position:chr5:62579977-62580243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):37, 65

               
               
               Conread position:327-767
               
               
               Cow position:chr5:28770437-28770873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 109

               
               
               Conread position:345-640
               
               
               Cow position:chr5:25925681-25925379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:223
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):74, 90

               
               
               Conread position:362-696
               
               
               Cow position:chr5:56109946-56109605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:253
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):58, 20

               
               
               Conread position:363-780
               
               
               Cow position:chr5:48224075-48223682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:283
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):28, 82

               
               
               Conread position:367-766
               
               
               Cow position:chr5:42587714-42587290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:288
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):25, 392

               
               
               Conread position:368-744
               
               
               Cow position:chr5:63620772-63621142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):52, 123

               
               
               Conread position:371-612
               
               
               Cow position:chr5:53599832-53599593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):49, 12

               
               
               Conread position:378-758
               
               
               Cow position:chr5:57965069-57964706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):42, 104

               
               
               Conread position:380-767
               
               
               Cow position:chr5:51953099-51953493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 164

               
               
               Conread position:387-637
               
               
               Cow position:chr5:26161746-26161511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):203, 41

               
               
               Conread position:387-755
               
               
               Cow position:chr5:35583867-35584230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:259
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):11, 154

               
               
               Conread position:388-750
               
               
               Cow position:chr5:51360880-51361219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:242
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):110, 43

               
               
               Conread position:392-726
               
               
               Cow position:chr5:72755296-72755627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):64, 42

               
               
               Conread position:393-769
               
               
               Cow position:chr5:11235821-11236197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 160

               
               
               Conread position:401-719
               
               
               Cow position:chr5:13575493-13575180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 28

               
               
               Conread position:418-766
               
               
               Cow position:chr5:14072300-14071966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 23

               
               
               Conread position:425-766
               
               
               Cow position:chr5:12329416-12329081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 10

               
               
               Conread position:427-761
               
               
               Cow position:chr5:35748822-35749149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 17

               
               
               Conread position:428-766
               
               
               Cow position:chr5:67463497-67463830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 42

               
               
               Conread position:439-780
               
               
               Cow position:chr5:71278946-71279280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):64, 40

               
               
               Conread position:440-766
               
               
               Cow position:chr5:58842400-58842718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:230
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):54, 101

               
               
               Conread position:445-707
               
               
               Cow position:chr5:11404212-11403937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:447-766
               
               
               Cow position:chr5:15705257-15704949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):166, 39

               
               
               Conread position:448-766
               
               
               Cow position:chr5:27679521-27679206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:248
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):55, 22

               
               
               Conread position:448-766
               
               
               Cow position:chr5:28371096-28370797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 90

               
               
               Conread position:454-755
               
               
               Cow position:chr5:19299171-19298870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 13

               
               
               Conread position:460-757
               
               
               Cow position:chr5:25355316-25355605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:223
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):43, 52

               
               
               Conread position:460-766
               
               
               Cow position:chr5:53922229-53921929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):130, 42

               
               
               Conread position:461-605
               
               
               Cow position:chr5:37608564-37608706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):42, 16

               
               
               Conread position:461-616
               
               
               Cow position:chr5:54606183-54606331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):38, 77

               
               
               Conread position:463-708
               
               
               Cow position:chr5:1286660-1286926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):40, 19

               
               
               Conread position:469-765
               
               
               Cow position:chr5:9025496-9025798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 71

               
               
               Conread position:486-714
               
               
               Cow position:chr5:39206956-39206730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):17, 55

               
               
               Conread position:488-769
               
               
               Cow position:chr5:15808580-15808303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 50

               
               
               Conread position:489-737
               
               
               Cow position:chr5:20717466-20717706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):237, 48

               
               
               Conread position:496-755
               
               
               Cow position:chr5:60725611-60725867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):96, 41

               
               
               Conread position:497-758
               
               
               Cow position:chr5:20648910-20648653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 40

               
               
               Conread position:498-758
               
               
               Cow position:chr5:57490503-57490764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):92, 32

               
               
               Conread position:500-773
               
               
               Cow position:chr5:47698037-47697765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 37

               
               
               Conread position:504-758
               
               
               Cow position:chr5:33516426-33516164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):80, 33

               
               
               Conread position:505-766
               
               
               Cow position:chr5:12581067-12581309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:201
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:506-766
               
               
               Cow position:chr5:29029698-29029961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:209
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):65, 31

               
               
               Conread position:514-683
               
               
               Cow position:chr5:12609966-12610137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):35, 22

               
               
               Conread position:536-758
               
               
               Cow position:chr5:56826426-56826652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:178
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):57, 33

               
               
               Conread position:536-766
               
               
               Cow position:chr5:31551217-31551445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:183
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):56, 30

               
               
               Conread position:536-766
               
               
               Cow position:chr5:50159612-50159836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):56, 44

               
               
               Conread position:538-766
               
               
               Cow position:chr5:54157832-54158066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):46, 55

               
               
               Conread position:541-743
               
               
               Cow position:chr5:18379640-18379835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):59, 51

               
               
               Conread position:542-766
               
               
               Cow position:chr5:33570255-33570468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):48, 28

               
               
               Conread position:547-764
               
               
               Cow position:chr5:67579447-67579667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):45, 189

               
               
               Conread position:550-769
               
               
               Cow position:chr5:37624470-37624695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):42, 97

               
               
               Conread position:552-766
               
               
               Cow position:chr5:9232869-9232658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):37, 112

               
               
               Conread position:566-725
               
               
               Cow position:chr5:31944004-31944169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:568-732
               
               
               Cow position:chr5:54761446-54761616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):24, 121

               
               
               Conread position:570-769
               
               
               Cow position:chr5:58384704-58384907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):22, 168

               
               
               Conread position:571-768
               
               
               Cow position:chr5:7584423-7584226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):21, 105

               
               
               Conread position:571-769
               
               
               Cow position:chr5:12602310-12602512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:170
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):25, 21

               
               
               Conread position:581-758
               
               
               Cow position:chr5:31461628-31461817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):11, 165

               
               
               Conread position:589-766
               
               
               Cow position:chr5:65590667-65590491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):35, 19

               
               
               Conread position:608-766
               
               
               Cow position:chr5:5830727-5830576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):154, 68

               
               
               Conread position:608-766
               
               
               Cow position:chr5:36156903-36157066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):90, 40

               
               
               Conread position:609-774
               
               
               Cow position:chr5:62580439-62580604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):160, 122

               
               
               Conread position:610-769
               
               
               Cow position:chr5:67001901-67002060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):51, 124

               
               
               Conread position:614-766
               
               
               Cow position:chr5:57629828-57629677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:629-766
               
               
               Cow position:chr5:59640054-59640191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):131, 104

               
               
               Conread position:665-764
               
               
               Cow position:chr5:10785014-10784916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:83
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:154-379
               
               
               Cow position:chr6:1095334-1095111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):60, 5

               
               
               Conread position:157-320
               
               
               Cow position:chr6:3374538-3374379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):95, 54

               
               
               Conread position:157-375
               
               
               Cow position:chr6:20332457-20332240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):30, 79

               
               
               Conread position:157-771
               
               
               Cow position:chr6:45617406-45616798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 79

               
               
               Conread position:158-350
               
               
               Cow position:chr6:38899744-38899551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):52, 72

               
               
               Conread position:158-372
               
               
               Cow position:chr6:32428265-32428476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):55, 66

               
               
               Conread position:158-378
               
               
               Cow position:chr6:7998043-7998264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):55, 80

               
               
               Conread position:158-390
               
               
               Cow position:chr6:51071736-51071969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):55, 94

               
               
               Conread position:158-726
               
               
               Cow position:chr6:44377300-44377866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 21

               
               
               Conread position:158-758
               
               
               Cow position:chr6:11159975-11159369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 78

               
               
               Conread position:158-766
               
               
               Cow position:chr6:29077762-29078361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 79

               
               
               Conread position:158-767
               
               
               Cow position:chr6:23891585-23892187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 78

               
               
               Conread position:158-767
               
               
               Cow position:chr6:41557497-41558117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 79

               
               
               Conread position:158-769
               
               
               Cow position:chr6:31688158-31687555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 260

               
               
               Conread position:158-776
               
               
               Cow position:chr6:3017478-3018114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:662
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 78

               
               
               Conread position:158-777
               
               
               Cow position:chr6:62754458-62753855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:643
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 16

               
               
               Conread position:159-404
               
               
               Cow position:chr6:29803830-29804075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):90, 76

               
               
               Conread position:159-725
               
               
               Cow position:chr6:39917198-39917759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 77

               
               
               Conread position:161-520
               
               
               Cow position:chr6:4666765-4666397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 198

               
               
               Conread position:161-779
               
               
               Cow position:chr6:45692628-45692019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 89

               
               
               Conread position:166-335
               
               
               Cow position:chr6:57686187-57686356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):46, 58

               
               
               Conread position:166-767
               
               
               Cow position:chr6:58594067-58593511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 68

               
               
               Conread position:167-379
               
               
               Cow position:chr6:16337708-16337494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):14, 122

               
               
               Conread position:168-418
               
               
               Cow position:chr6:12519536-12519780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):44, 69

               
               
               Conread position:171-595
               
               
               Cow position:chr6:69274748-69274318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 63

               
               
               Conread position:181-582
               
               
               Cow position:chr6:6244855-6244472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:280
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):62, 54

               
               
               Conread position:183-407
               
               
               Cow position:chr6:27710702-27710921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):27, 7

               
               
               Conread position:209-756
               
               
               Cow position:chr6:6635224-6635764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 23

               
               
               Conread position:218-732
               
               
               Cow position:chr6:23932874-23932398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 17

               
               
               Conread position:221-370
               
               
               Cow position:chr6:20172348-20172499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):9, 69

               
               
               Conread position:251-515
               
               
               Cow position:chr6:19459163-19459436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):141, 59

               
               
               Conread position:256-720
               
               
               Cow position:chr6:41157357-41157809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 26

               
               
               Conread position:269-411
               
               
               Cow position:chr6:66388204-66388055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:273-774
               
               
               Cow position:chr6:5678900-5678397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 113

               
               
               Conread position:277-667
               
               
               Cow position:chr6:29082912-29082550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:266
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):17, 5

               
               
               Conread position:308-686
               
               
               Cow position:chr6:3374268-3373862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 245

               
               
               Conread position:365-758
               
               
               Cow position:chr6:66676945-66677358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):34, 182

               
               
               Conread position:366-766
               
               
               Cow position:chr6:32428677-32429052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 12

               
               
               Conread position:380-749
               
               
               Cow position:chr6:66840109-66840484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:260
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):40, 158

               
               
               Conread position:380-769
               
               
               Cow position:chr6:53416712-53416318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 59

               
               
               Conread position:383-766
               
               
               Cow position:chr6:6722393-6722776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:283
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):36, 95

               
               
               Conread position:384-736
               
               
               Cow position:chr6:55661989-55662339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:256
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):19, 30

               
               
               Conread position:387-758
               
               
               Cow position:chr6:29299808-29300167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):35, 64

               
               
               Conread position:391-603
               
               
               Cow position:chr6:39798730-39798515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):34, 44

               
               
               Conread position:418-750
               
               
               Cow position:chr6:26692841-26692510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):84, 120

               
               
               Conread position:422-667
               
               
               Cow position:chr6:55743360-55743593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):168, 67

               
               
               Conread position:424-680
               
               
               Cow position:chr6:812115-811852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):18, 109

               
               
               Conread position:425-766
               
               
               Cow position:chr6:20332604-20332941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 94

               
               
               Conread position:430-766
               
               
               Cow position:chr6:35698120-35697783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 37

               
               
               Conread position:432-756
               
               
               Cow position:chr6:55659682-55659368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):67, 7

               
               
               Conread position:440-753
               
               
               Cow position:chr6:23648613-23648305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):46, 93

               
               
               Conread position:441-766
               
               
               Cow position:chr6:1077112-1076789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:243
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):62, 35

               
               
               Conread position:447-729
               
               
               Cow position:chr6:35831862-35832151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 23

               
               
               Conread position:447-756
               
               
               Cow position:chr6:44389932-44389625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 91

               
               
               Conread position:452-672
               
               
               Cow position:chr6:22098342-22098129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):50, 67

               
               
               Conread position:460-769
               
               
               Cow position:chr6:14279985-14280297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 57

               
               
               Conread position:461-721
               
               
               Cow position:chr6:5500729-5500473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):140, 21

               
               
               Conread position:473-751
               
               
               Cow position:chr6:34556855-34557128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:214
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):119, 9

               
               
               Conread position:475-690
               
               
               Cow position:chr6:33311452-33311664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):28, 57

               
               
               Conread position:487-750
               
               
               Cow position:chr6:55398145-55398414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):16, 90

               
               
               Conread position:488-719
               
               
               Cow position:chr6:39293531-39293755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):16, 50

               
               
               Conread position:492-758
               
               
               Cow position:chr6:54295988-54296236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):11, 46

               
               
               Conread position:494-732
               
               
               Cow position:chr6:37085258-37085493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:193
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):5, 35

               
               
               Conread position:498-766
               
               
               Cow position:chr6:40241053-40241315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):7, 41

               
               
               Conread position:500-768
               
               
               Cow position:chr6:62327913-62328174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):81, 29

               
               
               Conread position:502-769
               
               
               Cow position:chr6:20748749-20749021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:509-767
               
               
               Cow position:chr6:4666120-4665873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):106, 22

               
               
               Conread position:510-766
               
               
               Cow position:chr6:35126726-35126480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 22

               
               
               Conread position:527-769
               
               
               Cow position:chr6:19715850-19715608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):65, 19

               
               
               Conread position:536-753
               
               
               Cow position:chr6:43596146-43595924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):54, 203

               
               
               Conread position:536-763
               
               
               Cow position:chr6:5516931-5516715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):152, 56

               
               
               Conread position:536-765
               
               
               Cow position:chr6:27711030-27711265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):56, 178

               
               
               Conread position:538-770
               
               
               Cow position:chr6:24496527-24496291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):64, 199

               
               
               Conread position:539-766
               
               
               Cow position:chr6:14162209-14161985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):68, 32

               
               
               Conread position:540-766
               
               
               Cow position:chr6:50502001-50502225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 67

               
               
               Conread position:547-766
               
               
               Cow position:chr6:1940086-1939855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):45, 162

               
               
               Conread position:549-763
               
               
               Cow position:chr6:44771248-44771452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):43, 10

               
               
               Conread position:550-766
               
               
               Cow position:chr6:15261001-15261221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):25, 16

               
               
               Conread position:550-766
               
               
               Cow position:chr6:15262046-15262266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):25, 16

               
               
               Conread position:589-770
               
               
               Cow position:chr6:3936165-3935988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:610-766
               
               
               Cow position:chr6:24260329-24260175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:611-767
               
               
               Cow position:chr6:35266009-35265861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:614-766
               
               
               Cow position:chr6:16495129-16494977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):116, 70

               
               
               Conread position:617-764
               
               
               Cow position:chr6:13092589-13092443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:621-754
               
               
               Cow position:chr6:28008965-28008833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:627-775
               
               
               Cow position:chr6:24337576-24337427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):133, 106

               
               
               Conread position:632-766
               
               
               Cow position:chr6:30287046-30287179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:156-727
               
               
               Cow position:chr7:42222409-42221825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 72

               
               
               Conread position:157-379
               
               
               Cow position:chr7:25223619-25223839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):56, 73

               
               
               Conread position:157-668
               
               
               Cow position:chr7:65953372-65952857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 66

               
               
               Conread position:158-350
               
               
               Cow position:chr7:1608555-1608357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:158-367
               
               
               Cow position:chr7:35171551-35171332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:158-379
               
               
               Cow position:chr7:37024858-37025079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):56, 78

               
               
               Conread position:158-380
               
               
               Cow position:chr7:35754492-35754713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):54, 24

               
               
               Conread position:158-381
               
               
               Cow position:chr7:61754622-61754841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:177
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):52, 39

               
               
               Conread position:158-393
               
               
               Cow position:chr7:11187248-11187485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:181
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):61, 78

               
               
               Conread position:158-411
               
               
               Cow position:chr7:63547990-63547739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):54, 10

               
               
               Conread position:158-419
               
               
               Cow position:chr7:34670144-34670419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:158-510
               
               
               Cow position:chr7:1398254-1397899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 78

               
               
               Conread position:158-756
               
               
               Cow position:chr7:20104991-20104382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 78

               
               
               Conread position:158-757
               
               
               Cow position:chr7:61425580-61426200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 78

               
               
               Conread position:158-766
               
               
               Cow position:chr7:11593175-11592597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 47

               
               
               Conread position:158-766
               
               
               Cow position:chr7:29378116-29377519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 79

               
               
               Conread position:158-766
               
               
               Cow position:chr7:43004406-43005020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:158-766
               
               
               Cow position:chr7:62516039-62516641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 78

               
               
               Conread position:158-767
               
               
               Cow position:chr7:48335442-48334867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 78

               
               
               Conread position:158-767
               
               
               Cow position:chr7:67498733-67499329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):285, 49

               
               
               Conread position:159-391
               
               
               Cow position:chr7:52130540-52130773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):53, 77

               
               
               Conread position:159-590
               
               
               Cow position:chr7:27709633-27709190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 53

               
               
               Conread position:159-766
               
               
               Cow position:chr7:20289245-20288627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 282

               
               
               Conread position:160-499
               
               
               Cow position:chr7:65849038-65848696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):10, 51

               
               
               Conread position:161-379
               
               
               Cow position:chr7:28671988-28671772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):41, 75

               
               
               Conread position:161-703
               
               
               Cow position:chr7:13822816-13823360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 60

               
               
               Conread position:175-718
               
               
               Cow position:chr7:39512544-39512025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 30

               
               
               Conread position:184-701
               
               
               Cow position:chr7:63328130-63328664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 156

               
               
               Conread position:187-418
               
               
               Cow position:chr7:27763040-27763271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):193, 50

               
               
               Conread position:248-478
               
               
               Cow position:chr7:2967251-2967490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):172, 38

               
               
               Conread position:251-379
               
               
               Cow position:chr7:23446802-23446674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:270-767
               
               
               Cow position:chr7:62048536-62049046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 190

               
               
               Conread position:281-535
               
               
               Cow position:chr7:64366710-64366962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):160, 108

               
               
               Conread position:296-764
               
               
               Cow position:chr7:56664234-56664686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 120

               
               
               Conread position:297-725
               
               
               Cow position:chr7:5701086-5701520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 86

               
               
               Conread position:313-748
               
               
               Cow position:chr7:45064238-45063801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 165

               
               
               Conread position:333-565
               
               
               Cow position:chr7:28560850-28560620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):70, 50

               
               
               Conread position:356-603
               
               
               Cow position:chr7:59164120-59164368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):29, 11

               
               
               Conread position:363-766
               
               
               Cow position:chr7:12920395-12920014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:290
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):188, 19

               
               
               Conread position:379-754
               
               
               Cow position:chr7:5247692-5247315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):61, 163

               
               
               Conread position:385-758
               
               
               Cow position:chr7:68246562-68246932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:255
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):39, 151

               
               
               Conread position:386-768
               
               
               Cow position:chr7:5448051-5447685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:274
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):36, 152

               
               
               Conread position:386-769
               
               
               Cow position:chr7:5435633-5435269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:272
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):36, 152

               
               
               Conread position:388-754
               
               
               Cow position:chr7:45099483-45099855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:260
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):32, 98

               
               
               Conread position:400-755
               
               
               Cow position:chr7:59844724-59845077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 45

               
               
               Conread position:418-764
               
               
               Cow position:chr7:45722018-45722350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):42, 18

               
               
               Conread position:419-742
               
               
               Cow position:chr7:33339433-33339730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:432-673
               
               
               Cow position:chr7:43231053-43231288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):71, 100

               
               
               Conread position:444-642
               
               
               Cow position:chr7:31442037-31441834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):59, 101

               
               
               Conread position:460-754
               
               
               Cow position:chr7:42555356-42555631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 26

               
               
               Conread position:460-769
               
               
               Cow position:chr7:46216380-46216686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 35

               
               
               Conread position:477-758
               
               
               Cow position:chr7:59204617-59204911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:220
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):6, 60

               
               
               Conread position:478-703
               
               
               Cow position:chr7:6533011-6532789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 50

               
               
               Conread position:487-636
               
               
               Cow position:chr7:65519780-65519632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):41, 13

               
               
               Conread position:487-758
               
               
               Cow position:chr7:68366893-68366614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):15, 62

               
               
               Conread position:488-757
               
               
               Cow position:chr7:56356713-56356448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):113, 31

               
               
               Conread position:500-758
               
               
               Cow position:chr7:24883640-24883387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 36

               
               
               Conread position:500-768
               
               
               Cow position:chr7:40023080-40023318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:501-765
               
               
               Cow position:chr7:16738808-16739059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):111, 36

               
               
               Conread position:501-766
               
               
               Cow position:chr7:40622555-40622812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):96, 34

               
               
               Conread position:526-769
               
               
               Cow position:chr7:28010294-28010052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):66, 21

               
               
               Conread position:532-739
               
               
               Cow position:chr7:40615912-40616099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:536-720
               
               
               Cow position:chr7:30027540-30027732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):56, 30

               
               
               Conread position:536-758
               
               
               Cow position:chr7:6006779-6006561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):49, 63

               
               
               Conread position:539-756
               
               
               Cow position:chr7:63547372-63547169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):53, 31

               
               
               Conread position:542-757
               
               
               Cow position:chr7:32589214-32589438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):48, 24

               
               
               Conread position:544-774
               
               
               Cow position:chr7:54060433-54060189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):48, 59

               
               
               Conread position:552-748
               
               
               Cow position:chr7:239095-238901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):141, 78

               
               
               Conread position:568-727
               
               
               Cow position:chr7:64367125-64367294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):24, 134

               
               
               Conread position:573-769
               
               
               Cow position:chr7:43257631-43257831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):40, 155

               
               
               Conread position:588-757
               
               
               Cow position:chr7:185338-185509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):19, 148

               
               
               Conread position:608-765
               
               
               Cow position:chr7:8893568-8893412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:134
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:609-765
               
               
               Cow position:chr7:48413592-48413438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:609-766
               
               
               Cow position:chr7:23612506-23612352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):91, 10

               
               
               Conread position:610-766
               
               
               Cow position:chr7:27765738-27765885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:612-766
               
               
               Cow position:chr7:40643480-40643632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:618-766
               
               
               Cow position:chr7:65519625-65519478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:619-753
               
               
               Cow position:chr7:53356219-53356089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:631-769
               
               
               Cow position:chr7:31441617-31441483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):131, 14

               
               
               Conread position:155-766
               
               
               Cow position:chr8:51877938-51877349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 56

               
               
               Conread position:157-536
               
               
               Cow position:chr8:11792189-11792591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):30, 308

               
               
               Conread position:158-342
               
               
               Cow position:chr8:12790841-12790663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):89, 31

               
               
               Conread position:158-379
               
               
               Cow position:chr8:44857460-44857686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):18, 79

               
               
               Conread position:158-388
               
               
               Cow position:chr8:9985590-9985810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):53, 95

               
               
               Conread position:158-402
               
               
               Cow position:chr8:59137899-59137662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):53, 34

               
               
               Conread position:158-418
               
               
               Cow position:chr8:8480943-8480686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):48, 56

               
               
               Conread position:158-433
               
               
               Cow position:chr8:21119276-21119001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 96

               
               
               Conread position:158-478
               
               
               Cow position:chr8:31886741-31887041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):52, 72

               
               
               Conread position:158-730
               
               
               Cow position:chr8:23441136-23440541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 78

               
               
               Conread position:158-732
               
               
               Cow position:chr8:48682497-48681919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 14

               
               
               Conread position:158-743
               
               
               Cow position:chr8:30021917-30021346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 32

               
               
               Conread position:158-754
               
               
               Cow position:chr8:33437788-33438388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 79

               
               
               Conread position:158-766
               
               
               Cow position:chr8:2974648-2975273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 71

               
               
               Conread position:158-768
               
               
               Cow position:chr8:54158729-54159346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 78

               
               
               Conread position:159-304
               
               
               Cow position:chr8:24517446-24517300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):83, 70

               
               
               Conread position:159-335
               
               
               Cow position:chr8:41951600-41951774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):90, 48

               
               
               Conread position:159-536
               
               
               Cow position:chr8:32719973-32720318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:273
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):83, 47

               
               
               Conread position:159-722
               
               
               Cow position:chr8:19369487-19368954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 27

               
               
               Conread position:159-766
               
               
               Cow position:chr8:45686434-45685871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 78

               
               
               Conread position:160-557
               
               
               Cow position:chr8:21078539-21078927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 74

               
               
               Conread position:160-766
               
               
               Cow position:chr8:40432863-40432264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 17

               
               
               Conread position:161-757
               
               
               Cow position:chr8:22103197-22102594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 75

               
               
               Conread position:170-482
               
               
               Cow position:chr8:27369096-27369411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):42, 66

               
               
               Conread position:171-766
               
               
               Cow position:chr8:19772507-19773075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 65

               
               
               Conread position:176-730
               
               
               Cow position:chr8:4337056-4336491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 60

               
               
               Conread position:232-766
               
               
               Cow position:chr8:7104347-7103811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:551
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 106

               
               
               Conread position:277-758
               
               
               Cow position:chr8:5874269-5874749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 104

               
               
               Conread position:293-634
               
               
               Cow position:chr8:952164-952498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):71, 109

               
               
               Conread position:293-766
               
               
               Cow position:chr8:40273510-40273041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 91

               
               
               Conread position:293-769
               
               
               Cow position:chr8:18725343-18725814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 63

               
               
               Conread position:300-766
               
               
               Cow position:chr8:20341571-20341084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 43

               
               
               Conread position:308-646
               
               
               Cow position:chr8:7126224-7125890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):69, 120

               
               
               Conread position:338-724
               
               
               Cow position:chr8:53891690-53892095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 151

               
               
               Conread position:363-686
               
               
               Cow position:chr8:54828437-54828765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:241
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):55, 136

               
               
               Conread position:384-766
               
               
               Cow position:chr8:51443337-51442977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:268
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):62, 50

               
               
               Conread position:388-710
               
               
               Cow position:chr8:42151770-42151457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:234
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):49, 102

               
               
               Conread position:391-670
               
               
               Cow position:chr8:18810651-18810941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):29, 146

               
               
               Conread position:400-763
               
               
               Cow position:chr8:37381380-37381726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:257
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):33, 60

               
               
               Conread position:416-756
               
               
               Cow position:chr8:14617637-14617303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 19

               
               
               Conread position:422-742
               
               
               Cow position:chr8:53359702-53359376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:236
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):20, 119

               
               
               Conread position:424-761
               
               
               Cow position:chr8:18883089-18883427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 7

               
               
               Conread position:431-765
               
               
               Cow position:chr8:34439732-34440063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 26

               
               
               Conread position:447-758
               
               
               Cow position:chr8:33818947-33818643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):52, 84

               
               
               Conread position:447-766
               
               
               Cow position:chr8:8480369-8480044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 22

               
               
               Conread position:448-766
               
               
               Cow position:chr8:18801524-18801836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 90

               
               
               Conread position:448-766
               
               
               Cow position:chr8:28387487-28387185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 44

               
               
               Conread position:460-766
               
               
               Cow position:chr8:6763981-6763680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 65

               
               
               Conread position:463-766
               
               
               Cow position:chr8:6507979-6507670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 108

               
               
               Conread position:473-721
               
               
               Cow position:chr8:37193277-37193530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):30, 100

               
               
               Conread position:477-754
               
               
               Cow position:chr8:9672193-9672472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):26, 60

               
               
               Conread position:487-750
               
               
               Cow position:chr8:57404368-57404644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):15, 22

               
               
               Conread position:492-756
               
               
               Cow position:chr8:19793385-19793127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):11, 39

               
               
               Conread position:496-766
               
               
               Cow position:chr8:49406387-49406130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):14, 7

               
               
               Conread position:498-766
               
               
               Cow position:chr8:10167175-10167429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 40

               
               
               Conread position:501-775
               
               
               Cow position:chr8:31887983-31888244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):264, 36

               
               
               Conread position:534-765
               
               
               Cow position:chr8:26041013-26040794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):58, 32

               
               
               Conread position:535-766
               
               
               Cow position:chr8:28049160-28048944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):225, 39

               
               
               Conread position:536-696
               
               
               Cow position:chr8:6959656-6959500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):75, 97

               
               
               Conread position:536-766
               
               
               Cow position:chr8:11794560-11794781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:181
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):61, 56

               
               
               Conread position:538-758
               
               
               Cow position:chr8:1168076-1167859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):52, 62

               
               
               Conread position:544-774
               
               
               Cow position:chr8:19305427-19305652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:182
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):82, 48

               
               
               Conread position:552-766
               
               
               Cow position:chr8:31185621-31185838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):25, 138

               
               
               Conread position:556-764
               
               
               Cow position:chr8:32720318-32720511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:559-755
               
               
               Cow position:chr8:15822028-15822221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):151, 55

               
               
               Conread position:561-765
               
               
               Cow position:chr8:36685649-36685859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):10, 179

               
               
               Conread position:564-767
               
               
               Cow position:chr8:32960200-32960000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:159
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:570-725
               
               
               Cow position:chr8:7102487-7102649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):22, 105

               
               
               Conread position:571-758
               
               
               Cow position:chr8:32327297-32327490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):37, 30

               
               
               Conread position:610-766
               
               
               Cow position:chr8:9986241-9986396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:610-767
               
               
               Cow position:chr8:14703109-14702956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):150, 16

               
               
               Conread position:614-765
               
               
               Cow position:chr8:21900125-21900271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:626-757
               
               
               Cow position:chr8:40570584-40570455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:649-768
               
               
               Cow position:chr8:7125575-7125458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:659-758
               
               
               Cow position:chr8:32789789-32789691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:84
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:157-766
               
               
               Cow position:chr9:41317931-41318555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 80

               
               
               Conread position:158-379
               
               
               Cow position:chr9:5485907-5485690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):98, 54

               
               
               Conread position:158-379
               
               
               Cow position:chr9:13845779-13845567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):54, 24

               
               
               Conread position:158-379
               
               
               Cow position:chr9:22976817-22977036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):85, 71

               
               
               Conread position:158-413
               
               
               Cow position:chr9:55651075-55650820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):91, 24

               
               
               Conread position:158-417
               
               
               Cow position:chr9:12182010-12181750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):54, 97

               
               
               Conread position:158-418
               
               
               Cow position:chr9:10761308-10761558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):52, 28

               
               
               Conread position:158-418
               
               
               Cow position:chr9:59114418-59114153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):97, 29

               
               
               Conread position:158-506
               
               
               Cow position:chr9:55364936-55364576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 80

               
               
               Conread position:158-535
               
               
               Cow position:chr9:44944066-44944442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 13

               
               
               Conread position:158-590
               
               
               Cow position:chr9:1281061-1281497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 16

               
               
               Conread position:158-758
               
               
               Cow position:chr9:12183788-12183167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 72

               
               
               Conread position:158-766
               
               
               Cow position:chr9:14732378-14731771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 78

               
               
               Conread position:159-378
               
               
               Cow position:chr9:2223732-2223954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):51, 98

               
               
               Conread position:159-766
               
               
               Cow position:chr9:34762811-34763426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 77

               
               
               Conread position:160-389
               
               
               Cow position:chr9:19079953-19080168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):68, 27

               
               
               Conread position:166-643
               
               
               Cow position:chr9:51269902-51269434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 71

               
               
               Conread position:166-780
               
               
               Cow position:chr9:25502498-25503084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 70

               
               
               Conread position:167-748
               
               
               Cow position:chr9:12198864-12199460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 53

               
               
               Conread position:168-390
               
               
               Cow position:chr9:11830034-11829813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):81, 37

               
               
               Conread position:170-766
               
               
               Cow position:chr9:4835018-4834419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 66

               
               
               Conread position:173-766
               
               
               Cow position:chr9:6109914-6109341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 36

               
               
               Conread position:178-769
               
               
               Cow position:chr9:18570364-18570958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 58

               
               
               Conread position:194-589
               
               
               Cow position:chr9:5622018-5622408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:280
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):12, 42

               
               
               Conread position:218-490
               
               
               Cow position:chr9:15685467-15685741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):163, 17

               
               
               Conread position:255-725
               
               
               Cow position:chr9:9077163-9077624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 76

               
               
               Conread position:262-557
               
               
               Cow position:chr9:39993676-39993971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:219
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):158, 121

               
               
               Conread position:275-637
               
               
               Cow position:chr9:52725425-52725796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 264

               
               
               Conread position:280-719
               
               
               Cow position:chr9:7670538-7670100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 265

               
               
               Conread position:291-766
               
               
               Cow position:chr9:34188873-34188414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 50

               
               
               Conread position:292-680
               
               
               Cow position:chr9:53596899-53597299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 18

               
               
               Conread position:293-766
               
               
               Cow position:chr9:2638410-2638886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 212

               
               
               Conread position:315-766
               
               
               Cow position:chr9:38698356-38697924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 98

               
               
               Conread position:338-684
               
               
               Cow position:chr9:35527577-35527223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:266
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):82, 16

               
               
               Conread position:356-613
               
               
               Cow position:chr9:46657812-46658057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):148, 43

               
               
               Conread position:373-778
               
               
               Cow position:chr9:35224773-35224379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):57, 13

               
               
               Conread position:378-750
               
               
               Cow position:chr9:55262435-55262789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:240
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):21, 9

               
               
               Conread position:378-753
               
               
               Cow position:chr9:12565198-12564836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 115

               
               
               Conread position:380-766
               
               
               Cow position:chr9:1526976-1527369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 165

               
               
               Conread position:386-765
               
               
               Cow position:chr9:39001578-39001212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:274
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):34, 156

               
               
               Conread position:388-622
               
               
               Cow position:chr9:9539404-9539174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):62, 31

               
               
               Conread position:392-749
               
               
               Cow position:chr9:31540108-31540465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):111, 46

               
               
               Conread position:418-766
               
               
               Cow position:chr9:10003830-10003482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):83, 114

               
               
               Conread position:422-766
               
               
               Cow position:chr9:22377024-22376692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 44

               
               
               Conread position:424-758
               
               
               Cow position:chr9:15855268-15855597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 107

               
               
               Conread position:430-732
               
               
               Cow position:chr9:6557585-6557287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):18, 46

               
               
               Conread position:451-766
               
               
               Cow position:chr9:26585450-26585150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):150, 40

               
               
               Conread position:460-603
               
               
               Cow position:chr9:40858948-40859090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 78

               
               
               Conread position:460-756
               
               
               Cow position:chr9:8234334-8234053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 58

               
               
               Conread position:460-757
               
               
               Cow position:chr9:25812575-25812853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:460-766
               
               
               Cow position:chr9:47200487-47200779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):128, 35

               
               
               Conread position:460-766
               
               
               Cow position:chr9:56411392-56411687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):42, 60

               
               
               Conread position:473-714
               
               
               Cow position:chr9:58125904-58125661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):30, 67

               
               
               Conread position:492-766
               
               
               Cow position:chr9:13072071-13071794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):11, 26

               
               
               Conread position:492-771
               
               
               Cow position:chr9:19835682-19835966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 36

               
               
               Conread position:493-748
               
               
               Cow position:chr9:45140597-45140339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 43

               
               
               Conread position:505-766
               
               
               Cow position:chr9:1517594-1517854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:199
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):17, 98

               
               
               Conread position:507-637
               
               
               Cow position:chr9:31089932-31089807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:522-767
               
               
               Cow position:chr9:23294316-23294075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:186
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):18, 46

               
               
               Conread position:535-766
               
               
               Cow position:chr9:15282839-15282607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):57, 166

               
               
               Conread position:543-685
               
               
               Cow position:chr9:25634652-25634515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):68, 41

               
               
               Conread position:547-726
               
               
               Cow position:chr9:19081946-19082127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):42, 99

               
               
               Conread position:549-766
               
               
               Cow position:chr9:39994110-39994331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):43, 24

               
               
               Conread position:551-764
               
               
               Cow position:chr9:64606088-64606302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):65, 15

               
               
               Conread position:553-769
               
               
               Cow position:chr9:62721192-62721411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):39, 185

               
               
               Conread position:561-766
               
               
               Cow position:chr9:55203021-55203225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):35, 18

               
               
               Conread position:564-728
               
               
               Cow position:chr9:59114089-59113912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:565-754
               
               
               Cow position:chr9:19119586-19119768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):26, 42

               
               
               Conread position:569-710
               
               
               Cow position:chr9:14373748-14373599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):22, 38

               
               
               Conread position:571-758
               
               
               Cow position:chr9:33326234-33326054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):20, 39

               
               
               Conread position:572-766
               
               
               Cow position:chr9:40923021-40923222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):22, 168

               
               
               Conread position:573-725
               
               
               Cow position:chr9:42366454-42366297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):19, 96

               
               
               Conread position:582-766
               
               
               Cow position:chr9:35795046-35794862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):25, 43

               
               
               Conread position:589-749
               
               
               Cow position:chr9:26033672-26033830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):17, 139

               
               
               Conread position:589-765
               
               
               Cow position:chr9:56795114-56795286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):17, 72

               
               
               Conread position:605-766
               
               
               Cow position:chr9:416872-416713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:610-758
               
               
               Cow position:chr9:8779658-8779798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:610-766
               
               
               Cow position:chr9:5622457-5622612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:610-766
               
               
               Cow position:chr9:20394649-20394802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):100, 30

               
               
               Conread position:614-766
               
               
               Cow position:chr9:48076142-48076295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:626-766
               
               
               Cow position:chr9:35527059-35526920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:639-767
               
               
               Cow position:chr9:37301901-37301774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:141-758
               
               
               Cow position:chrX:25453184-25453788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 17

               
               
               Conread position:151-763
               
               
               Cow position:chrX:19018247-19017616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 55

               
               
               Conread position:152-766
               
               
               Cow position:chrX:18814182-18814800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 84

               
               
               Conread position:155-367
               
               
               Cow position:chrX:12826763-12826977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):5, 74

               
               
               Conread position:157-725
               
               
               Cow position:chrX:4597710-4597113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 77

               
               
               Conread position:157-766
               
               
               Cow position:chrX:16816681-16817265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 86

               
               
               Conread position:158-320
               
               
               Cow position:chrX:37956373-37956531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):89, 28

               
               
               Conread position:158-329
               
               
               Cow position:chrX:24952540-24952372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):54, 68

               
               
               Conread position:158-413
               
               
               Cow position:chrX:30729396-30729141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):52, 72

               
               
               Conread position:158-416
               
               
               Cow position:chrX:4631655-4631395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 77

               
               
               Conread position:158-418
               
               
               Cow position:chrX:24285973-24286236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:195
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):53, 78

               
               
               Conread position:158-577
               
               
               Cow position:chrX:10311763-10312171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 78

               
               
               Conread position:158-605
               
               
               Cow position:chrX:41660194-41660610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:315
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):51, 72

               
               
               Conread position:158-628
               
               
               Cow position:chrX:8558446-8557980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 47

               
               
               Conread position:158-766
               
               
               Cow position:chrX:20504732-20505329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 78

               
               
               Conread position:158-766
               
               
               Cow position:chrX:21816282-21816889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 95

               
               
               Conread position:158-767
               
               
               Cow position:chrX:11675081-11675701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 78

               
               
               Conread position:158-767
               
               
               Cow position:chrX:24201198-24201782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 24

               
               
               Conread position:158-780
               
               
               Cow position:chrX:2147361-2147946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 39

               
               
               Conread position:159-754
               
               
               Cow position:chrX:12689069-12688464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 317

               
               
               Conread position:159-764
               
               
               Cow position:chrX:23254188-23253594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 77

               
               
               Conread position:159-766
               
               
               Cow position:chrX:2186270-2186881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 84

               
               
               Conread position:163-390
               
               
               Cow position:chrX:19818857-19818629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:193-740
               
               
               Cow position:chrX:21886064-21885501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 9

               
               
               Conread position:216-725
               
               
               Cow position:chrX:956556-957073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:530
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 19

               
               
               Conread position:218-717
               
               
               Cow position:chrX:43647686-43647182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 17

               
               
               Conread position:241-580
               
               
               Cow position:chrX:1426859-1427188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):13, 150

               
               
               Conread position:243-653
               
               
               Cow position:chrX:25106314-25106738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 10

               
               
               Conread position:248-765
               
               
               Cow position:chrX:9910646-9910135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 37

               
               
               Conread position:255-641
               
               
               Cow position:chrX:31816806-31817179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):244, 11

               
               
               Conread position:275-558
               
               
               Cow position:chrX:18517921-18518225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:275-766
               
               
               Cow position:chrX:4590087-4590572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 6

               
               
               Conread position:286-510
               
               
               Cow position:chrX:19217181-19216945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:296-682
               
               
               Cow position:chrX:28938949-28939322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 199

               
               
               Conread position:299-535
               
               
               Cow position:chrX:9051276-9051033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:302-766
               
               
               Cow position:chrX:40353471-40353932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 47

               
               
               Conread position:323-752
               
               
               Cow position:chrX:37956753-37957174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 47

               
               
               Conread position:329-603
               
               
               Cow position:chrX:13060743-13061002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):48, 55

               
               
               Conread position:338-766
               
               
               Cow position:chrX:24952176-24951723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:330
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):52, 135

               
               
               Conread position:344-763
               
               
               Cow position:chrX:27458532-27458117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 93

               
               
               Conread position:344-766
               
               
               Cow position:chrX:37980580-37981007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 205

               
               
               Conread position:352-766
               
               
               Cow position:chrX:19127430-19127019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 186

               
               
               Conread position:369-766
               
               
               Cow position:chrX:6471929-6472334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 24

               
               
               Conread position:370-704
               
               
               Cow position:chrX:2700880-2700544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:246
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):50, 17

               
               
               Conread position:374-685
               
               
               Cow position:chrX:24194015-24194319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):46, 12

               
               
               Conread position:374-730
               
               
               Cow position:chrX:25921559-25921214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:271
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):22, 64

               
               
               Conread position:376-758
               
               
               Cow position:chrX:37364647-37365015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:261
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):44, 62

               
               
               Conread position:378-774
               
               
               Cow position:chrX:24886551-24886163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):42, 120

               
               
               Conread position:380-750
               
               
               Cow position:chrX:10462560-10462913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:246
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):117, 20

               
               
               Conread position:383-757
               
               
               Cow position:chrX:4625142-4625528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 162

               
               
               Conread position:383-766
               
               
               Cow position:chrX:11982838-11983208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 112

               
               
               Conread position:387-706
               
               
               Cow position:chrX:32546133-32546467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):35, 158

               
               
               Conread position:388-765
               
               
               Cow position:chrX:18700119-18699735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 24

               
               
               Conread position:389-767
               
               
               Cow position:chrX:37138032-37137645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:268
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):31, 77

               
               
               Conread position:416-767
               
               
               Cow position:chrX:13403470-13403124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 122

               
               
               Conread position:418-754
               
               
               Cow position:chrX:4631096-4630764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 17

               
               
               Conread position:421-578
               
               
               Cow position:chrX:25653394-25653544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):78, 111

               
               
               Conread position:423-768
               
               
               Cow position:chrX:10534364-10534705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):76, 8

               
               
               Conread position:424-766
               
               
               Cow position:chrX:4601358-4601030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 36

               
               
               Conread position:440-758
               
               
               Cow position:chrX:40698541-40698837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):14, 38

               
               
               Conread position:447-758
               
               
               Cow position:chrX:37236321-37236618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 40

               
               
               Conread position:449-766
               
               
               Cow position:chrX:4440165-4440475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 38

               
               
               Conread position:474-780
               
               
               Cow position:chrX:1330463-1330159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 65

               
               
               Conread position:481-761
               
               
               Cow position:chrX:4019590-4019302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):21, 53

               
               
               Conread position:500-765
               
               
               Cow position:chrX:20957928-20958201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):101, 30

               
               
               Conread position:500-766
               
               
               Cow position:chrX:32456147-32456388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):92, 31

               
               
               Conread position:502-755
               
               
               Cow position:chrX:37749012-37749270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):90, 35

               
               
               Conread position:506-766
               
               
               Cow position:chrX:5956968-5956714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 21

               
               
               Conread position:537-766
               
               
               Cow position:chrX:6672170-6672403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 22

               
               
               Conread position:542-706
               
               
               Cow position:chrX:4948101-4947933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):50, 122

               
               
               Conread position:543-766
               
               
               Cow position:chrX:34100417-34100631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):47, 67

               
               
               Conread position:544-766
               
               
               Cow position:chrX:35552746-35552963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:179
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):43, 22

               
               
               Conread position:544-767
               
               
               Cow position:chrX:18518438-18518662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 25

               
               
               Conread position:544-780
               
               
               Cow position:chrX:11851368-11851139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):48, 38

               
               
               Conread position:566-761
               
               
               Cow position:chrX:40350322-40350517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):23, 116

               
               
               Conread position:568-758
               
               
               Cow position:chrX:1427692-1427890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):24, 144

               
               
               Conread position:568-768
               
               
               Cow position:chrX:19391840-19391648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):24, 16

               
               
               Conread position:570-765
               
               
               Cow position:chrX:30784978-30785179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):44, 100

               
               
               Conread position:601-766
               
               
               Cow position:chrX:25653542-25653709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):13, 134

               
               
               Conread position:608-757
               
               
               Cow position:chrX:34035609-34035757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):102, 110

               
               
               Conread position:610-767
               
               
               Cow position:chrX:24286529-24286681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:617-752
               
               
               Cow position:chrX:30729307-30729173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:617-766
               
               
               Cow position:chrX:503087-502939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:631-765
               
               
               Cow position:chrX:19216433-19216301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:631-766
               
               
               Cow position:chrX:8557702-8557569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):77, 87
Conread position:	106-682
Cow position:	chr1:76780513-76779925 (view UCSC Genome Browser custom track)
Alignm length:	607
Alignm identity:	383
Alignm E-value:	0
Alignm gaps (pig, cow):	105, 130
Conread position:	152-501
Cow position:	chr1:63133604-63133971 (view UCSC Genome Browser custom track)
Alignm length:	377
Alignm identity:	264
Alignm E-value:	1e-37
Alignm gaps (pig, cow):	8, 88
Conread position:	157-406
Cow position:	chr1:23624156-23624402 (view UCSC Genome Browser custom track)
Alignm length:	253
Alignm identity:	180
Alignm E-value:	3e-34
Alignm gaps (pig, cow):	53, 79
Conread position:	157-758
Cow position:	chr1:85409875-85409279 (view UCSC Genome Browser custom track)
Alignm length:	615
Alignm identity:	445
Alignm E-value:	0
Alignm gaps (pig, cow):	55, 79
Conread position:	158-346
Cow position:	chr1:86364886-86365074 (view UCSC Genome Browser custom track)
Alignm length:	191
Alignm identity:	135
Alignm E-value:	1e-24
Alignm gaps (pig, cow):	91, 51
Conread position:	158-376
Cow position:	chr1:71331541-71331332 (view UCSC Genome Browser custom track)
Alignm length:	219
Alignm identity:	150
Alignm E-value:	8e-22
Alignm gaps (pig, cow):	42, 0
Conread position:	158-378
Cow position:	chr1:70065799-70066018 (view UCSC Genome Browser custom track)
Alignm length:	224
Alignm identity:	152
Alignm E-value:	3e-22
Alignm gaps (pig, cow):	55, 47
Conread position:	158-379
Cow position:	chr1:57646667-57646883 (view UCSC Genome Browser custom track)
Alignm length:	225
Alignm identity:	159
Alignm E-value:	4e-26
Alignm gaps (pig, cow):	55, 34
Conread position:	158-380
Cow position:	chr1:40161208-40161434 (view UCSC Genome Browser custom track)
Alignm length:	229
Alignm identity:	173
Alignm E-value:	2e-38
Alignm gaps (pig, cow):	42, 79
Conread position:	158-390
Cow position:	chr1:86325611-86325378 (view UCSC Genome Browser custom track)
Alignm length:	238
Alignm identity:	161
Alignm E-value:	3e-22
Alignm gaps (pig, cow):	55, 72
Conread position:	158-398
Cow position:	chr1:45572879-45572636 (view UCSC Genome Browser custom track)
Alignm length:	245
Alignm identity:	160
Alignm E-value:	3e-22
Alignm gaps (pig, cow):	52, 73
Conread position:	158-418
Cow position:	chr1:40223042-40222787 (view UCSC Genome Browser custom track)
Alignm length:	264
Alignm identity:	186
Alignm E-value:	1e-33
Alignm gaps (pig, cow):	47, 78
Conread position:	158-419
Cow position:	chr1:19440023-19439768 (view UCSC Genome Browser custom track)
Alignm length:	263
Alignm identity:	199
Alignm E-value:	0
Alignm gaps (pig, cow):	91, 29
Conread position:	158-497
Cow position:	chr1:52206674-52207019 (view UCSC Genome Browser custom track)
Alignm length:	351
Alignm identity:	250
Alignm E-value:	0
Alignm gaps (pig, cow):	54, 72
Conread position:	158-590
Cow position:	chr1:30041732-30042146 (view UCSC Genome Browser custom track)
Alignm length:	440
Alignm identity:	320
Alignm E-value:	0
Alignm gaps (pig, cow):	53, 12
Conread position:	158-655
Cow position:	chr1:87914966-87914470 (view UCSC Genome Browser custom track)
Alignm length:	526
Alignm identity:	377
Alignm E-value:	0
Alignm gaps (pig, cow):	54, 29
Conread position:	158-677
Cow position:	chr1:40164234-40164739 (view UCSC Genome Browser custom track)
Alignm length:	531
Alignm identity:	389
Alignm E-value:	0
Alignm gaps (pig, cow):	42, 62
Conread position:	158-691
Cow position:	chr1:92551150-92550593 (view UCSC Genome Browser custom track)
Alignm length:	569
Alignm identity:	416
Alignm E-value:	0
Alignm gaps (pig, cow):	93, 71
Conread position:	158-708
Cow position:	chr1:74713453-74713993 (view UCSC Genome Browser custom track)
Alignm length:	563
Alignm identity:	422
Alignm E-value:	0
Alignm gaps (pig, cow):	94, 77
Conread position:	158-744
Cow position:	chr1:64479980-64479391 (view UCSC Genome Browser custom track)
Alignm length:	607
Alignm identity:	432
Alignm E-value:	0
Alignm gaps (pig, cow):	52, 78